RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 04-Jul-2021 22:30:10 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5XX13/2_msa/Q5XX13_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5XX13/3_mltree/Q5XX13 --seed 2 --threads 5 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5XX13/2_msa/Q5XX13_trimmed_msa.fasta [00:00:00] Loaded alignment with 552 taxa and 257 sites WARNING: Sequences tr_A0A0E1RYS0_A0A0E1RYS0_COCIM_246410 and tr_E9D894_E9D894_COCPS_443226 are exactly identical! WARNING: Sequences tr_A0A0E1RYS0_A0A0E1RYS0_COCIM_246410 and tr_A0A0J7B681_A0A0J7B681_COCIT_404692 are exactly identical! WARNING: Sequences sp_B6Q4Z5_SCONB_TALMQ_441960 and tr_A0A093XZ61_A0A093XZ61_TALMA_1077442 are exactly identical! WARNING: Sequences tr_C0ND61_C0ND61_AJECG_447093 and tr_C6HK03_C6HK03_AJECH_544712 are exactly identical! WARNING: Sequences tr_C0ND61_C0ND61_AJECG_447093 and tr_F0UJJ6_F0UJJ6_AJEC8_544711 are exactly identical! WARNING: Sequences tr_A0A179UPZ6_A0A179UPZ6_BLAGS_559298 and tr_C5GE15_C5GE15_AJEDR_559297 are exactly identical! WARNING: Sequences tr_B0WY67_B0WY67_CULQU_7176 and tr_B0WZP8_B0WZP8_CULQU_7176 are exactly identical! WARNING: Sequences tr_M4A9Y8_M4A9Y8_XIPMA_8083 and tr_A0A087XX61_A0A087XX61_POEFO_48698 are exactly identical! WARNING: Sequences sp_A2QCU8_SCONB_ASPNC_425011 and tr_G3Y308_G3Y308_ASPNA_380704 are exactly identical! WARNING: Sequences sp_A2QCU8_SCONB_ASPNC_425011 and tr_A0A319BHW1_A0A319BHW1_9EURO_1450533 are exactly identical! WARNING: Sequences tr_F6W2U2_F6W2U2_MACMU_9544 and tr_G7PTQ7_G7PTQ7_MACFA_9541 are exactly identical! WARNING: Sequences tr_F4NRB8_F4NRB8_BATDJ_684364 and tr_A0A177W7R9_A0A177W7R9_BATDE_403673 are exactly identical! WARNING: Sequences tr_H1A1C1_H1A1C1_TAEGU_59729 and tr_A0A091EW16_A0A091EW16_CORBR_85066 are exactly identical! WARNING: Sequences tr_H1A1C1_H1A1C1_TAEGU_59729 and tr_A0A091JJA7_A0A091JJA7_EGRGA_188379 are exactly identical! WARNING: Sequences tr_H1A1C1_H1A1C1_TAEGU_59729 and tr_A0A093PJ80_A0A093PJ80_9PASS_328815 are exactly identical! WARNING: Sequences tr_H1A1C1_H1A1C1_TAEGU_59729 and tr_A0A091VAT2_A0A091VAT2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H1A1C1_H1A1C1_TAEGU_59729 and tr_A0A087R779_A0A087R779_APTFO_9233 are exactly identical! WARNING: Sequences tr_H1A1C1_H1A1C1_TAEGU_59729 and tr_A0A093I007_A0A093I007_STRCA_441894 are exactly identical! WARNING: Sequences tr_H1A1C1_H1A1C1_TAEGU_59729 and tr_A0A091X8T0_A0A091X8T0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_H1A1C1_H1A1C1_TAEGU_59729 and tr_A0A099YZN8_A0A099YZN8_TINGU_94827 are exactly identical! WARNING: Sequences tr_H1A1C1_H1A1C1_TAEGU_59729 and tr_A0A0A0ABD7_A0A0A0ABD7_CHAVO_50402 are exactly identical! WARNING: Sequences tr_H1A1C1_H1A1C1_TAEGU_59729 and tr_A0A091HNN2_A0A091HNN2_CALAN_9244 are exactly identical! WARNING: Sequences sp_Q5M786_WDR5_XENTR_8364 and tr_Q66J98_Q66J98_XENLA_8355 are exactly identical! WARNING: Sequences tr_F2SL63_F2SL63_TRIRC_559305 and tr_A0A178ERT8_A0A178ERT8_TRIRU_5551 are exactly identical! WARNING: Sequences tr_A0A0C4DI30_A0A0C4DI30_FUSO4_426428 and tr_A0A0D2XR52_A0A0D2XR52_FUSO4_426428 are exactly identical! WARNING: Sequences tr_A0A0C4DI30_A0A0C4DI30_FUSO4_426428 and tr_A0A0D2XS57_A0A0D2XS57_FUSO4_426428 are exactly identical! WARNING: Sequences tr_A0A0C4DI30_A0A0C4DI30_FUSO4_426428 and tr_A0A0D2XTR7_A0A0D2XTR7_FUSO4_426428 are exactly identical! WARNING: Sequences tr_L0PDA0_L0PDA0_PNEJ8_1209962 and tr_A0A0W4ZPZ3_A0A0W4ZPZ3_PNEJ7_1408657 are exactly identical! WARNING: Sequences tr_A0A151NVK1_A0A151NVK1_ALLMI_8496 and tr_A0A3Q0H746_A0A3Q0H746_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A164WA99_A0A164WA99_9HOMO_1314777 and tr_A0A166BYC8_A0A166BYC8_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A1S4AVG4_A0A1S4AVG4_TOBAC_4097 and tr_A0A1U7XG58_A0A1U7XG58_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3RFR9_A0A1S3RFR9_SALSA_8030 and sp_B5X3C4_LIS1B_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3RFR9_A0A1S3RFR9_SALSA_8030 and tr_A0A060VW21_A0A060VW21_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2K5NZ45_A0A2K5NZ45_CERAT_9531 and tr_A0A2K5YKU1_A0A2K5YKU1_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I1GFL3_A0A2I1GFL3_9GLOM_588596 and tr_A0A2H5RVX9_A0A2H5RVX9_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A2N5T4W2_A0A2N5T4W2_9BASI_200324 and tr_A0A2N5VV47_A0A2N5VV47_9BASI_200324 are exactly identical! WARNING: Sequences tr_A0A2N5TJG5_A0A2N5TJG5_9BASI_200324 and tr_A0A2N5VSY8_A0A2N5VSY8_9BASI_200324 are exactly identical! WARNING: Duplicate sequences found: 37 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5XX13/3_mltree/Q5XX13.raxml.reduced.phy Alignment comprises 1 partitions and 257 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 257 / 257 Gaps: 8.08 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5XX13/3_mltree/Q5XX13.raxml.rba Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 552 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 257 / 20560 [00:00:00] Data distribution: max. searches per worker: 4 Starting ML tree search with 20 distinct starting trees [00:00:00 -277529.880161] Initial branch length optimization [00:00:04 -236150.014177] Model parameter optimization (eps = 10.000000) [00:00:37 -234981.953484] AUTODETECT spr round 1 (radius: 5) [00:01:53 -171390.210508] AUTODETECT spr round 2 (radius: 10) [00:03:16 -133836.153642] AUTODETECT spr round 3 (radius: 15) [00:04:49 -119835.543323] AUTODETECT spr round 4 (radius: 20) [00:06:53 -113242.016458] AUTODETECT spr round 5 (radius: 25) [00:09:38 -112916.118317] SPR radius for FAST iterations: 25 (autodetect) [00:09:38 -112916.118317] Model parameter optimization (eps = 3.000000) [00:09:58 -112774.805516] FAST spr round 1 (radius: 25) [00:11:52 -100813.840126] FAST spr round 2 (radius: 25) [00:13:19 -100143.773411] FAST spr round 3 (radius: 25) [00:14:32 -100104.539990] FAST spr round 4 (radius: 25) [00:15:31 -100098.701429] FAST spr round 5 (radius: 25) [00:16:26 -100098.700887] Model parameter optimization (eps = 1.000000) [00:16:44 -100094.016001] SLOW spr round 1 (radius: 5) [00:18:20 -100063.440058] SLOW spr round 2 (radius: 5) [00:19:52 -100056.736859] SLOW spr round 3 (radius: 5) [00:21:16 -100055.372773] SLOW spr round 4 (radius: 5) [00:22:36 -100055.372696] SLOW spr round 5 (radius: 10) [00:23:57 -100055.372673] SLOW spr round 6 (radius: 15) [00:26:34 -100055.372664] SLOW spr round 7 (radius: 20) [00:30:35 -100055.372661] SLOW spr round 8 (radius: 25) [00:35:04 -100055.372659] Model parameter optimization (eps = 0.100000) [00:35:15] [worker #0] ML tree search #1, logLikelihood: -100054.652424 [00:35:15 -281609.968300] Initial branch length optimization [00:35:19 -238481.270710] Model parameter optimization (eps = 10.000000) [00:35:50] [worker #3] ML tree search #4, logLikelihood: -100044.766069 [00:36:04 -237415.394285] AUTODETECT spr round 1 (radius: 5) [00:36:40] [worker #2] ML tree search #3, logLikelihood: -100060.406711 [00:37:19 -167318.711624] AUTODETECT spr round 2 (radius: 10) [00:38:05] [worker #4] ML tree search #5, logLikelihood: -100061.184458 [00:38:42 -129448.764939] AUTODETECT spr round 3 (radius: 15) [00:39:58] [worker #1] ML tree search #2, logLikelihood: -100042.198604 [00:40:26 -110436.279015] AUTODETECT spr round 4 (radius: 20) [00:42:32 -108907.670075] AUTODETECT spr round 5 (radius: 25) [00:45:08 -108564.161320] SPR radius for FAST iterations: 25 (autodetect) [00:45:08 -108564.161320] Model parameter optimization (eps = 3.000000) [00:45:28 -108462.666780] FAST spr round 1 (radius: 25) [00:47:12 -100528.317675] FAST spr round 2 (radius: 25) [00:48:33 -100168.105871] FAST spr round 3 (radius: 25) [00:49:42 -100097.909428] FAST spr round 4 (radius: 25) [00:50:43 -100087.120012] FAST spr round 5 (radius: 25) [00:51:38 -100087.119673] Model parameter optimization (eps = 1.000000) [00:51:53 -100081.576745] SLOW spr round 1 (radius: 5) [00:53:25 -100058.768929] SLOW spr round 2 (radius: 5) [00:54:53 -100047.643303] SLOW spr round 3 (radius: 5) [00:56:14 -100047.643095] SLOW spr round 4 (radius: 10) [00:57:36 -100047.643084] SLOW spr round 5 (radius: 15) [01:00:20 -100047.643083] SLOW spr round 6 (radius: 20) [01:04:16 -100047.643083] SLOW spr round 7 (radius: 25) [01:08:38 -100047.643083] Model parameter optimization (eps = 0.100000) [01:08:42] [worker #0] ML tree search #6, logLikelihood: -100047.561247 [01:08:42 -283656.561695] Initial branch length optimization [01:08:47 -239998.351112] Model parameter optimization (eps = 10.000000) [01:09:17 -239013.615800] AUTODETECT spr round 1 (radius: 5) [01:10:27 -172625.588656] AUTODETECT spr round 2 (radius: 10) [01:11:47 -129719.264929] AUTODETECT spr round 3 (radius: 15) [01:13:19 -114690.720884] AUTODETECT spr round 4 (radius: 20) [01:13:20] [worker #4] ML tree search #10, logLikelihood: -100061.973845 [01:14:29] [worker #3] ML tree search #9, logLikelihood: -100047.697033 [01:15:30 -110963.483949] AUTODETECT spr round 5 (radius: 25) [01:16:04] [worker #2] ML tree search #8, logLikelihood: -100049.983952 [01:17:56 -110924.778574] SPR radius for FAST iterations: 25 (autodetect) [01:17:56 -110924.778574] Model parameter optimization (eps = 3.000000) [01:18:14 -110767.108977] FAST spr round 1 (radius: 25) [01:19:58 -100643.035238] FAST spr round 2 (radius: 25) [01:21:16 -100152.881930] FAST spr round 3 (radius: 25) [01:22:25 -100105.490581] FAST spr round 4 (radius: 25) [01:23:24 -100085.422049] FAST spr round 5 (radius: 25) [01:24:19 -100080.092363] FAST spr round 6 (radius: 25) [01:25:11 -100079.563966] FAST spr round 7 (radius: 25) [01:26:02 -100079.563869] Model parameter optimization (eps = 1.000000) [01:26:14 -100076.403284] SLOW spr round 1 (radius: 5) [01:27:43 -100056.019493] SLOW spr round 2 (radius: 5) [01:29:06 -100050.328195] SLOW spr round 3 (radius: 5) [01:30:28 -100049.402581] SLOW spr round 4 (radius: 5) [01:31:44 -100049.402544] SLOW spr round 5 (radius: 10) [01:33:02 -100049.402533] SLOW spr round 6 (radius: 15) [01:33:26] [worker #1] ML tree search #7, logLikelihood: -100044.752695 [01:35:43 -100049.402528] SLOW spr round 7 (radius: 20) [01:39:32 -100049.402527] SLOW spr round 8 (radius: 25) [01:44:00 -100049.402526] Model parameter optimization (eps = 0.100000) [01:44:06] [worker #0] ML tree search #11, logLikelihood: -100049.327111 [01:44:06 -282406.106264] Initial branch length optimization [01:44:10 -239394.333722] Model parameter optimization (eps = 10.000000) [01:44:39 -238311.805537] AUTODETECT spr round 1 (radius: 5) [01:45:53 -170497.474572] AUTODETECT spr round 2 (radius: 10) [01:46:14] [worker #3] ML tree search #14, logLikelihood: -100091.298626 [01:46:44] [worker #4] ML tree search #15, logLikelihood: -100051.791155 [01:47:16 -134331.623073] AUTODETECT spr round 3 (radius: 15) [01:48:54 -115771.627483] AUTODETECT spr round 4 (radius: 20) [01:50:54 -111210.255268] AUTODETECT spr round 5 (radius: 25) [01:53:47 -110965.597398] SPR radius for FAST iterations: 25 (autodetect) [01:53:47 -110965.597398] Model parameter optimization (eps = 3.000000) [01:54:06 -110807.180809] FAST spr round 1 (radius: 25) [01:55:51 -100619.619097] FAST spr round 2 (radius: 25) [01:57:16 -100138.425172] FAST spr round 3 (radius: 25) [01:58:27 -100108.260630] FAST spr round 4 (radius: 25) [01:59:26 -100105.468788] FAST spr round 5 (radius: 25) [02:00:22 -100104.303129] FAST spr round 6 (radius: 25) [02:01:17 -100104.302264] Model parameter optimization (eps = 1.000000) [02:01:30 -100095.914782] SLOW spr round 1 (radius: 5) [02:03:03 -100061.906510] SLOW spr round 2 (radius: 5) [02:04:30 -100059.680484] SLOW spr round 3 (radius: 5) [02:05:53 -100056.950176] SLOW spr round 4 (radius: 5) [02:06:37] [worker #2] ML tree search #13, logLikelihood: -100055.195809 [02:07:13 -100056.950111] SLOW spr round 5 (radius: 10) [02:08:36 -100055.024913] SLOW spr round 6 (radius: 5) [02:10:22 -100054.856934] SLOW spr round 7 (radius: 5) [02:11:54 -100054.856934] SLOW spr round 8 (radius: 10) [02:13:21 -100054.856934] SLOW spr round 9 (radius: 15) [02:15:57 -100054.856934] SLOW spr round 10 (radius: 20) [02:18:22] [worker #1] ML tree search #12, logLikelihood: -100074.948028 [02:20:03 -100054.856934] SLOW spr round 11 (radius: 25) [02:24:46 -100054.856934] Model parameter optimization (eps = 0.100000) [02:24:49] [worker #0] ML tree search #16, logLikelihood: -100054.848099 [02:25:57] [worker #4] ML tree search #20, logLikelihood: -100061.573394 [02:27:01] [worker #3] ML tree search #19, logLikelihood: -100049.237648 [02:41:20] [worker #2] ML tree search #18, logLikelihood: -100050.132424 [02:57:13] [worker #1] ML tree search #17, logLikelihood: -100044.592509 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.157645,0.568410) (0.264336,0.597540) (0.430802,1.039102) (0.147217,2.070379) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -100042.198604 AIC score: 202298.397208 / AICc score: 2655410.397208 / BIC score: 206227.224434 Free parameters (model + branch lengths): 1107 WARNING: Number of free parameters (K=1107) is larger than alignment size (n=257). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5XX13/3_mltree/Q5XX13.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5XX13/3_mltree/Q5XX13.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5XX13/3_mltree/Q5XX13.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5XX13/3_mltree/Q5XX13.raxml.log Analysis started: 04-Jul-2021 22:30:10 / finished: 05-Jul-2021 01:27:24 Elapsed time: 10633.727 seconds Consumed energy: 828.864 Wh (= 4 km in an electric car, or 21 km with an e-scooter!)