RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 12-Jul-2021 18:02:59 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/2_msa/Q5VW22_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/3_mltree/Q5VW22.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/4_raxmlng_ancestral/Q5VW22 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626102179 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/2_msa/Q5VW22_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 663 sites WARNING: Sequences tr_B4R1D5_B4R1D5_DROSI_7240 and tr_Q9VCQ6_Q9VCQ6_DROME_7227 are exactly identical! WARNING: Sequences tr_A0A1D5PI31_A0A1D5PI31_CHICK_9031 and tr_A0A226MW26_A0A226MW26_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q68FF6_GIT1_MOUSE_10090 and sp_Q9Z272_GIT1_RAT_10116 are exactly identical! WARNING: Sequences sp_Q68FF6_GIT1_MOUSE_10090 and tr_H0WH82_H0WH82_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q68FF6_GIT1_MOUSE_10090 and sp_Q9Y2X7_GIT1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q68FF6_GIT1_MOUSE_10090 and tr_A0A287AKF0_A0A287AKF0_PIG_9823 are exactly identical! WARNING: Sequences sp_Q68FF6_GIT1_MOUSE_10090 and tr_A0A2I2UE84_A0A2I2UE84_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q68FF6_GIT1_MOUSE_10090 and tr_A0A2U3VW91_A0A2U3VW91_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XQM3_M3XQM3_MUSPF_9669 and tr_A0A2Y9JB63_A0A2Y9JB63_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XXB2_M3XXB2_MUSPF_9669 and tr_G1LS46_G1LS46_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XXB2_M3XXB2_MUSPF_9669 and tr_A0A2U3VBN3_A0A2U3VBN3_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XXB2_M3XXB2_MUSPF_9669 and tr_A0A2Y9KBY1_A0A2Y9KBY1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3HAK8_A0A2I3HAK8_NOMLE_61853 and tr_G3R222_G3R222_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HAK8_A0A2I3HAK8_NOMLE_61853 and tr_A0A2I3SFN4_A0A2I3SFN4_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HAK8_A0A2I3HAK8_NOMLE_61853 and tr_A0A2R8ZI72_A0A2R8ZI72_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2Y7M7_A0A2I2Y7M7_GORGO_9595 and tr_K7CJ94_K7CJ94_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2Y7M7_A0A2I2Y7M7_GORGO_9595 and sp_Q8N7R7_CCYL1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2Y7M7_A0A2I2Y7M7_GORGO_9595 and tr_A0A2R9B0L8_A0A2R9B0L8_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A0R3NEV5_A0A0R3NEV5_DROPS_46245 and tr_B4GP69_B4GP69_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2R8Q3_E2R8Q3_CANLF_9615 and tr_F7BFQ7_F7BFQ7_MACMU_9544 are exactly identical! WARNING: Sequences tr_E2R8Q3_E2R8Q3_CANLF_9615 and tr_G3SZ51_G3SZ51_LOXAF_9785 are exactly identical! WARNING: Sequences tr_E2R8Q3_E2R8Q3_CANLF_9615 and tr_F7HRE7_F7HRE7_CALJA_9483 are exactly identical! WARNING: Sequences tr_E2R8Q3_E2R8Q3_CANLF_9615 and tr_A0A0D9S392_A0A0D9S392_CHLSB_60711 are exactly identical! WARNING: Sequences tr_E2R8Q3_E2R8Q3_CANLF_9615 and tr_A0A2U3ZWW1_A0A2U3ZWW1_ODORO_9708 are exactly identical! WARNING: Sequences tr_E2R8Q3_E2R8Q3_CANLF_9615 and tr_A0A2U3Y2C9_A0A2U3Y2C9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_E2R8Q3_E2R8Q3_CANLF_9615 and tr_A0A2Y9KNH9_A0A2Y9KNH9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_H2QP05_H2QP05_PANTR_9598 and sp_Q15057_ACAP2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QVM6_H2QVM6_PANTR_9598 and sp_Q96P47_AGAP3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2RD06_H2RD06_PANTR_9598 and tr_A0A2R9BF19_A0A2R9BF19_PANPA_9597 are exactly identical! WARNING: Sequences tr_K7ASV6_K7ASV6_PANTR_9598 and sp_Q96P50_ACAP3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F1M4U0_F1M4U0_RAT_10116 and tr_A0A1U7RG82_A0A1U7RG82_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A158NGM0_A0A158NGM0_ATTCE_12957 and tr_A0A195B7V5_A0A195B7V5_9HYME_520822 are exactly identical! WARNING: Sequences tr_F7HCY1_F7HCY1_MACMU_9544 and tr_A0A096NYF0_A0A096NYF0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7HCY1_F7HCY1_MACMU_9544 and tr_A0A0D9QX81_A0A0D9QX81_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7HCY1_F7HCY1_MACMU_9544 and tr_A0A2K5KRJ1_A0A2K5KRJ1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HCY1_F7HCY1_MACMU_9544 and tr_A0A2K6E4Y1_A0A2K6E4Y1_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HJG6_F7HJG6_MACMU_9544 and tr_A0A096N8D9_A0A096N8D9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7HJG6_F7HJG6_MACMU_9544 and tr_A0A2K5LEQ3_A0A2K5LEQ3_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HJG6_F7HJG6_MACMU_9544 and tr_A0A2K6BBK1_A0A2K6BBK1_MACNE_9545 are exactly identical! WARNING: Sequences tr_H9FTD4_H9FTD4_MACMU_9544 and tr_A0A2I3N014_A0A2I3N014_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H9FTD4_H9FTD4_MACMU_9544 and tr_A0A2K5LK29_A0A2K5LK29_CERAT_9531 are exactly identical! WARNING: Sequences tr_H0YZJ0_H0YZJ0_TAEGU_59729 and tr_A0A093PU69_A0A093PU69_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZAT0_H0ZAT0_TAEGU_59729 and tr_U3K220_U3K220_FICAL_59894 are exactly identical! WARNING: Sequences tr_F7HYI9_F7HYI9_CALJA_9483 and tr_A0A096MLE9_A0A096MLE9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7HYI9_F7HYI9_CALJA_9483 and tr_A0A0D9RCH8_A0A0D9RCH8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7HYI9_F7HYI9_CALJA_9483 and tr_A0A2K5MQH6_A0A2K5MQH6_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HYI9_F7HYI9_CALJA_9483 and tr_A0A2K6CK18_A0A2K6CK18_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HYI9_F7HYI9_CALJA_9483 and tr_A0A2K6A287_A0A2K6A287_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1M9J5_G1M9J5_AILME_9646 and tr_A0A2U3WAQ4_A0A2U3WAQ4_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1M9J5_G1M9J5_AILME_9646 and tr_A0A2U3XPM5_A0A2U3XPM5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1M9J5_G1M9J5_AILME_9646 and tr_A0A2Y9JDN5_A0A2Y9JDN5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A096NQI1_A0A096NQI1_PAPAN_9555 and tr_A0A2K6CHJ1_A0A2K6CHJ1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A091UM65_A0A091UM65_NIPNI_128390 and tr_A0A0A0AMY3_A0A0A0AMY3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1S3SYR6_A0A1S3SYR6_SALSA_8030 and tr_A0A060W0V4_A0A060W0V4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226N2B4_A0A226N2B4_CALSU_9009 and tr_A0A226N842_A0A226N842_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0PHC7_A0A2D0PHC7_ICTPU_7998 and tr_A0A2D0PIN5_A0A2D0PIN5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QQT0_A0A2D0QQT0_ICTPU_7998 and tr_A0A2D0QRA4_A0A2D0QRA4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RBA0_A0A2D0RBA0_ICTPU_7998 and tr_W5UG84_W5UG84_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SM82_A0A2D0SM82_ICTPU_7998 and tr_A0A2D0SMV3_A0A2D0SMV3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SR04_A0A2D0SR04_ICTPU_7998 and tr_A0A2D0SR08_A0A2D0SR08_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SR04_A0A2D0SR04_ICTPU_7998 and tr_A0A2D0SR14_A0A2D0SR14_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SR04_A0A2D0SR04_ICTPU_7998 and tr_A0A2D0SR19_A0A2D0SR19_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SR04_A0A2D0SR04_ICTPU_7998 and tr_A0A2D0SS55_A0A2D0SS55_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SUW0_A0A2D0SUW0_ICTPU_7998 and tr_A0A2D0SUW8_A0A2D0SUW8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SUW0_A0A2D0SUW0_ICTPU_7998 and tr_A0A2D0SUX1_A0A2D0SUX1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5LQ80_A0A2K5LQ80_CERAT_9531 and tr_A0A2K6DPB1_A0A2K6DPB1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2K5MSE0_A0A2K5MSE0_CERAT_9531 and tr_A0A2K6DUQ0_A0A2K6DUQ0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2U4CKI3_A0A2U4CKI3_TURTR_9739 and tr_A0A2Y9LAK1_A0A2Y9LAK1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CKI3_A0A2U4CKI3_TURTR_9739 and tr_A0A383ZYH5_A0A383ZYH5_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9MW19_A0A2Y9MW19_DELLE_9749 and tr_A0A2Y9EX31_A0A2Y9EX31_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9Q718_A0A2Y9Q718_DELLE_9749 and tr_A0A2Y9T6A9_A0A2Y9T6A9_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 71 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/4_raxmlng_ancestral/Q5VW22.raxml.reduced.phy Alignment comprises 1 partitions and 663 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 663 Gaps: 33.34 % Invariant sites: 0.15 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/4_raxmlng_ancestral/Q5VW22.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/3_mltree/Q5VW22.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 166 / 13280 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -178725.816898 [00:00:00 -178725.816898] Initial branch length optimization [00:00:03 -171881.982073] Model parameter optimization (eps = 0.100000) [00:01:28] Tree #1, final logLikelihood: -171455.427100 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.103158,0.267170) (0.110586,0.398890) (0.455296,0.817120) (0.330960,1.680857) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/4_raxmlng_ancestral/Q5VW22.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/4_raxmlng_ancestral/Q5VW22.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/4_raxmlng_ancestral/Q5VW22.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/4_raxmlng_ancestral/Q5VW22.raxml.log Analysis started: 12-Jul-2021 18:02:59 / finished: 12-Jul-2021 18:04:34 Elapsed time: 95.103 seconds Consumed energy: 5.332 Wh