RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 01-Jul-2021 04:14:23 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/2_msa/Q5VW22_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/3_mltree/Q5VW22 --seed 2 --threads 5 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/2_msa/Q5VW22_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 272 sites WARNING: Sequences tr_B4Q581_B4Q581_DROSI_7240 and sp_Q9NGC3_CEG1A_DROME_7227 are exactly identical! WARNING: Sequences tr_B4R1D5_B4R1D5_DROSI_7240 and tr_Q9VCQ6_Q9VCQ6_DROME_7227 are exactly identical! WARNING: Sequences tr_A0A1D5NW09_A0A1D5NW09_CHICK_9031 and tr_A0A226NSM0_A0A226NSM0_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PI31_A0A1D5PI31_CHICK_9031 and tr_A0A226MW26_A0A226MW26_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NWZ1_F1NWZ1_CHICK_9031 and tr_A0A091UM65_A0A091UM65_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NWZ1_F1NWZ1_CHICK_9031 and tr_A0A087RDD6_A0A087RDD6_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NWZ1_F1NWZ1_CHICK_9031 and tr_A0A091VXV9_A0A091VXV9_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1NWZ1_F1NWZ1_CHICK_9031 and tr_A0A0A0AMY3_A0A0A0AMY3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_D3YUJ3_D3YUJ3_MOUSE_10090 and tr_F1M4U0_F1M4U0_RAT_10116 are exactly identical! WARNING: Sequences tr_D3YUJ3_D3YUJ3_MOUSE_10090 and tr_A0A1U7RG82_A0A1U7RG82_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q3UHD9_AGAP2_MOUSE_10090 and sp_Q8CGU4_AGAP2_RAT_10116 are exactly identical! WARNING: Sequences sp_Q68FF6_GIT1_MOUSE_10090 and sp_Q9Z272_GIT1_RAT_10116 are exactly identical! WARNING: Sequences sp_Q68FF6_GIT1_MOUSE_10090 and tr_H0WH82_H0WH82_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q68FF6_GIT1_MOUSE_10090 and sp_Q9Y2X7_GIT1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q68FF6_GIT1_MOUSE_10090 and tr_A0A287AKF0_A0A287AKF0_PIG_9823 are exactly identical! WARNING: Sequences sp_Q68FF6_GIT1_MOUSE_10090 and tr_A0A2I2UE84_A0A2I2UE84_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q68FF6_GIT1_MOUSE_10090 and tr_A0A3Q0D2S7_A0A3Q0D2S7_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q68FF6_GIT1_MOUSE_10090 and tr_A0A2U3VW91_A0A2U3VW91_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XN33_M3XN33_MUSPF_9669 and tr_I3MRM7_I3MRM7_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3XN33_M3XN33_MUSPF_9669 and tr_G1M9J5_G1M9J5_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XN33_M3XN33_MUSPF_9669 and tr_L5JZZ2_L5JZZ2_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3XN33_M3XN33_MUSPF_9669 and tr_M3WU07_M3WU07_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XN33_M3XN33_MUSPF_9669 and tr_A0A2U3WAQ4_A0A2U3WAQ4_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XN33_M3XN33_MUSPF_9669 and tr_A0A2U3XPM5_A0A2U3XPM5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XN33_M3XN33_MUSPF_9669 and tr_A0A2Y9JDN5_A0A2Y9JDN5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XQM3_M3XQM3_MUSPF_9669 and tr_A0A2U3WLQ0_A0A2U3WLQ0_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XQM3_M3XQM3_MUSPF_9669 and tr_A0A2Y9JB63_A0A2Y9JB63_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XXB2_M3XXB2_MUSPF_9669 and tr_G1LS46_G1LS46_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XXB2_M3XXB2_MUSPF_9669 and tr_A0A2U3VBN3_A0A2U3VBN3_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XXB2_M3XXB2_MUSPF_9669 and tr_A0A2Y9KBY1_A0A2Y9KBY1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YBK3_M3YBK3_MUSPF_9669 and tr_G1M4Z7_G1M4Z7_AILME_9646 are exactly identical! WARNING: Sequences tr_A0A2I3GNP3_A0A2I3GNP3_NOMLE_61853 and tr_A0A2R9BJT9_A0A2R9BJT9_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3H9W6_A0A2I3H9W6_NOMLE_61853 and sp_Q9UPQ3_AGAP1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HAK8_A0A2I3HAK8_NOMLE_61853 and tr_G3R222_G3R222_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HAK8_A0A2I3HAK8_NOMLE_61853 and tr_A0A2I3SFN4_A0A2I3SFN4_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HAK8_A0A2I3HAK8_NOMLE_61853 and tr_A0A2R8ZI72_A0A2R8ZI72_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QW60_G1QW60_NOMLE_61853 and tr_H2PP27_H2PP27_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QW60_G1QW60_NOMLE_61853 and tr_H2QVM6_H2QVM6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QW60_G1QW60_NOMLE_61853 and sp_Q96P47_AGAP3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QW60_G1QW60_NOMLE_61853 and tr_A0A2R9A9E7_A0A2R9A9E7_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1S5X8_G1S5X8_NOMLE_61853 and tr_G3QGD0_G3QGD0_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1S5X8_G1S5X8_NOMLE_61853 and tr_A0A2I3SJQ0_A0A2I3SJQ0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S5X8_G1S5X8_NOMLE_61853 and tr_A0A2R9B845_A0A2R9B845_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1P606_G1P606_MYOLU_59463 and tr_L5K1F3_L5K1F3_PTEAL_9402 are exactly identical! WARNING: Sequences tr_A0A2I2Y7M7_A0A2I2Y7M7_GORGO_9595 and tr_K7CJ94_K7CJ94_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2Y7M7_A0A2I2Y7M7_GORGO_9595 and sp_Q8N7R7_CCYL1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2Y7M7_A0A2I2Y7M7_GORGO_9595 and tr_F7AUG1_F7AUG1_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I2Y7M7_A0A2I2Y7M7_GORGO_9595 and tr_F7HYI9_F7HYI9_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I2Y7M7_A0A2I2Y7M7_GORGO_9595 and tr_A0A096MLE9_A0A096MLE9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I2Y7M7_A0A2I2Y7M7_GORGO_9595 and tr_A0A0D9RCH8_A0A0D9RCH8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2Y7M7_A0A2I2Y7M7_GORGO_9595 and tr_A0A2K5MQH6_A0A2K5MQH6_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I2Y7M7_A0A2I2Y7M7_GORGO_9595 and tr_A0A2K6CK18_A0A2K6CK18_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I2Y7M7_A0A2I2Y7M7_GORGO_9595 and tr_A0A2K6A287_A0A2K6A287_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I2Y7M7_A0A2I2Y7M7_GORGO_9595 and tr_A0A2R9B0L8_A0A2R9B0L8_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2Z8K9_A0A2I2Z8K9_GORGO_9595 and tr_K7ASV6_K7ASV6_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2Z8K9_A0A2I2Z8K9_GORGO_9595 and sp_Q96P50_ACAP3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1N552_G1N552_MELGA_9103 and tr_A0A226N8P5_A0A226N8P5_CALSU_9009 are exactly identical! WARNING: Sequences tr_G1N552_G1N552_MELGA_9103 and tr_A0A226PSY0_A0A226PSY0_COLVI_9014 are exactly identical! WARNING: Sequences tr_H9GFL2_H9GFL2_ANOCA_28377 and tr_F7FRS8_F7FRS8_MONDO_13616 are exactly identical! WARNING: Sequences tr_A0A0R3NEV5_A0A0R3NEV5_DROPS_46245 and tr_B4GP69_B4GP69_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A0R3NV39_A0A0R3NV39_DROPS_46245 and tr_B4GX25_B4GX25_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2R8Q3_E2R8Q3_CANLF_9615 and tr_F7BFQ7_F7BFQ7_MACMU_9544 are exactly identical! WARNING: Sequences tr_E2R8Q3_E2R8Q3_CANLF_9615 and tr_G3SZ51_G3SZ51_LOXAF_9785 are exactly identical! WARNING: Sequences tr_E2R8Q3_E2R8Q3_CANLF_9615 and tr_F7HRE7_F7HRE7_CALJA_9483 are exactly identical! WARNING: Sequences tr_E2R8Q3_E2R8Q3_CANLF_9615 and tr_G1LGY6_G1LGY6_AILME_9646 are exactly identical! WARNING: Sequences tr_E2R8Q3_E2R8Q3_CANLF_9615 and tr_A0A0D9S392_A0A0D9S392_CHLSB_60711 are exactly identical! WARNING: Sequences tr_E2R8Q3_E2R8Q3_CANLF_9615 and tr_A0A2U3ZWW1_A0A2U3ZWW1_ODORO_9708 are exactly identical! WARNING: Sequences tr_E2R8Q3_E2R8Q3_CANLF_9615 and tr_A0A2U3Y2C9_A0A2U3Y2C9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_E2R8Q3_E2R8Q3_CANLF_9615 and tr_A0A2Y9KNH9_A0A2Y9KNH9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1PD13_F1PD13_CANLF_9615 and tr_F6UJP0_F6UJP0_HORSE_9796 are exactly identical! WARNING: Sequences tr_F1PD13_F1PD13_CANLF_9615 and tr_A0A2Y9NPI9_A0A2Y9NPI9_DELLE_9749 are exactly identical! WARNING: Sequences tr_H2QP05_H2QP05_PANTR_9598 and sp_Q15057_ACAP2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QP05_H2QP05_PANTR_9598 and tr_A0A2Y9SVZ3_A0A2Y9SVZ3_PHYCD_9755 are exactly identical! WARNING: Sequences tr_H2RD06_H2RD06_PANTR_9598 and tr_A0A2R9BF19_A0A2R9BF19_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7DTP8_F7DTP8_HORSE_9796 and tr_A0A337S596_A0A337S596_FELCA_9685 are exactly identical! WARNING: Sequences tr_F7DTP8_F7DTP8_HORSE_9796 and tr_A0A2Y9KLD6_A0A2Y9KLD6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_W5PXZ1_W5PXZ1_SHEEP_9940 and tr_E1BI41_E1BI41_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5QC45_W5QC45_SHEEP_9940 and tr_E1BBI6_E1BBI6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5QGQ4_W5QGQ4_SHEEP_9940 and tr_F1MZ03_F1MZ03_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M4AC91_M4AC91_XIPMA_8083 and tr_A0A096M8N7_A0A096M8N7_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A158NGM0_A0A158NGM0_ATTCE_12957 and tr_A0A195B7V5_A0A195B7V5_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A1D5QP64_A0A1D5QP64_MACMU_9544 and tr_A0A096NQI1_A0A096NQI1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5QP64_A0A1D5QP64_MACMU_9544 and tr_A0A2K5M907_A0A2K5M907_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5QP64_A0A1D5QP64_MACMU_9544 and tr_A0A2K6CHJ1_A0A2K6CHJ1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5QZQ4_A0A1D5QZQ4_MACMU_9544 and tr_G7P219_G7P219_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5QZQ4_A0A1D5QZQ4_MACMU_9544 and tr_A0A2K5MPF4_A0A2K5MPF4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5QZQ4_A0A1D5QZQ4_MACMU_9544 and tr_A0A2K6CGD5_A0A2K6CGD5_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5R919_A0A1D5R919_MACMU_9544 and tr_A0A2I3NCN3_A0A2I3NCN3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5R919_A0A1D5R919_MACMU_9544 and tr_A0A2K5MSE0_A0A2K5MSE0_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5R919_A0A1D5R919_MACMU_9544 and tr_A0A2K6DUQ0_A0A2K6DUQ0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HCY1_F7HCY1_MACMU_9544 and tr_A0A096NYF0_A0A096NYF0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7HCY1_F7HCY1_MACMU_9544 and tr_A0A0D9QX81_A0A0D9QX81_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7HCY1_F7HCY1_MACMU_9544 and tr_A0A2K5KRJ1_A0A2K5KRJ1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HCY1_F7HCY1_MACMU_9544 and tr_A0A2K6E4Y1_A0A2K6E4Y1_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HJG6_F7HJG6_MACMU_9544 and tr_A0A096N8D9_A0A096N8D9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7HJG6_F7HJG6_MACMU_9544 and tr_A0A0D9R1N9_A0A0D9R1N9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7HJG6_F7HJG6_MACMU_9544 and tr_A0A2K5LEQ3_A0A2K5LEQ3_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HJG6_F7HJG6_MACMU_9544 and tr_A0A2K6BBK1_A0A2K6BBK1_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HJG6_F7HJG6_MACMU_9544 and tr_A0A2K5Z1S6_A0A2K5Z1S6_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7HLN4_F7HLN4_MACMU_9544 and tr_G7PTG4_G7PTG4_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7HLN4_F7HLN4_MACMU_9544 and tr_A0A2K5LDB5_A0A2K5LDB5_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HLN4_F7HLN4_MACMU_9544 and tr_A0A2K6BQW9_A0A2K6BQW9_MACNE_9545 are exactly identical! WARNING: Sequences tr_H9FTD4_H9FTD4_MACMU_9544 and tr_A0A2I3N014_A0A2I3N014_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H9FTD4_H9FTD4_MACMU_9544 and tr_A0A2K5LK29_A0A2K5LK29_CERAT_9531 are exactly identical! WARNING: Sequences tr_E5RZD8_E5RZD8_TRISP_6334 and tr_E5SZN3_E5SZN3_TRISP_6334 are exactly identical! WARNING: Sequences tr_E5RZD8_E5RZD8_TRISP_6334 and tr_A0A0V0RWT6_A0A0V0RWT6_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5RZD8_E5RZD8_TRISP_6334 and tr_A0A0V1CQC3_A0A0V1CQC3_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5RZD8_E5RZD8_TRISP_6334 and tr_A0A0V0WCH1_A0A0V0WCH1_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5RZD8_E5RZD8_TRISP_6334 and tr_A0A0V0VAY5_A0A0V0VAY5_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5RZD8_E5RZD8_TRISP_6334 and tr_A0A0V1A319_A0A0V1A319_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5RZD8_E5RZD8_TRISP_6334 and tr_A0A0V1NTD5_A0A0V1NTD5_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5RZD8_E5RZD8_TRISP_6334 and tr_A0A0V0UD97_A0A0V0UD97_9BILA_144512 are exactly identical! WARNING: Sequences tr_G3TT32_G3TT32_LOXAF_9785 and tr_A0A2Y9QWI5_A0A2Y9QWI5_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H0YP66_H0YP66_TAEGU_59729 and tr_U3KFF7_U3KFF7_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0YP66_H0YP66_TAEGU_59729 and tr_A0A218UHQ1_A0A218UHQ1_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0YZJ0_H0YZJ0_TAEGU_59729 and tr_A0A093PU69_A0A093PU69_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZAT0_H0ZAT0_TAEGU_59729 and tr_U3K220_U3K220_FICAL_59894 are exactly identical! WARNING: Sequences tr_F4WNE9_F4WNE9_ACREC_103372 and tr_A0A151XAK3_A0A151XAK3_9HYME_64791 are exactly identical! WARNING: Sequences tr_G7NYR9_G7NYR9_MACFA_9541 and tr_A0A2K5Y267_A0A2K5Y267_MANLE_9568 are exactly identical! WARNING: Sequences tr_W5KSP8_W5KSP8_ASTMX_7994 and tr_A0A2D0SUW0_A0A2D0SUW0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_W5KSP8_W5KSP8_ASTMX_7994 and tr_A0A2D0SUW8_A0A2D0SUW8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_W5KSP8_W5KSP8_ASTMX_7994 and tr_A0A2D0SUX1_A0A2D0SUX1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A3B6PM89_A0A3B6PM89_WHEAT_4565 and tr_A0A3B6QFM0_A0A3B6QFM0_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A044V903_A0A044V903_ONCVO_6282 and tr_A0A182EI32_A0A182EI32_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A0A1MZM2_A0A0A1MZM2_9FUNG_58291 and tr_A0A367JWG0_A0A367JWG0_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A091VCX5_A0A091VCX5_NIPNI_128390 and tr_A0A087R7X0_A0A087R7X0_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1S3SYR6_A0A1S3SYR6_SALSA_8030 and tr_A0A060W0V4_A0A060W0V4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1D1UMV8_A0A1D1UMV8_RAMVA_947166 and tr_A0A1D1URJ9_A0A1D1URJ9_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A226N2B4_A0A226N2B4_CALSU_9009 and tr_A0A226N842_A0A226N842_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0PHC7_A0A2D0PHC7_ICTPU_7998 and tr_A0A2D0PIN5_A0A2D0PIN5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QQT0_A0A2D0QQT0_ICTPU_7998 and tr_A0A2D0QR01_A0A2D0QR01_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QQT0_A0A2D0QQT0_ICTPU_7998 and tr_A0A2D0QRA4_A0A2D0QRA4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RBA0_A0A2D0RBA0_ICTPU_7998 and tr_W5UG84_W5UG84_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S3B5_A0A2D0S3B5_ICTPU_7998 and tr_A0A2D0S3B7_A0A2D0S3B7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S3B5_A0A2D0S3B5_ICTPU_7998 and tr_A0A2D0S3D4_A0A2D0S3D4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S3B5_A0A2D0S3B5_ICTPU_7998 and tr_A0A2D0S4V5_A0A2D0S4V5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SI70_A0A2D0SI70_ICTPU_7998 and tr_W5UCZ6_W5UCZ6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SLM4_A0A2D0SLM4_ICTPU_7998 and tr_A0A2D0SM82_A0A2D0SM82_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SLM4_A0A2D0SLM4_ICTPU_7998 and tr_A0A2D0SMV3_A0A2D0SMV3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SR04_A0A2D0SR04_ICTPU_7998 and tr_A0A2D0SR08_A0A2D0SR08_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SR04_A0A2D0SR04_ICTPU_7998 and tr_A0A2D0SR14_A0A2D0SR14_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SR04_A0A2D0SR04_ICTPU_7998 and tr_A0A2D0SR19_A0A2D0SR19_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SR04_A0A2D0SR04_ICTPU_7998 and tr_A0A2D0SS55_A0A2D0SS55_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5LQ80_A0A2K5LQ80_CERAT_9531 and tr_A0A2K6DPB1_A0A2K6DPB1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2U4CKI3_A0A2U4CKI3_TURTR_9739 and tr_A0A2Y9LAK1_A0A2Y9LAK1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CKI3_A0A2U4CKI3_TURTR_9739 and tr_A0A383ZYH5_A0A383ZYH5_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U3W1L5_A0A2U3W1L5_ODORO_9708 and tr_A0A2U3Y924_A0A2U3Y924_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9MW19_A0A2Y9MW19_DELLE_9749 and tr_A0A2Y9EX31_A0A2Y9EX31_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9NDS3_A0A2Y9NDS3_DELLE_9749 and tr_A0A383ZY70_A0A383ZY70_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9Q718_A0A2Y9Q718_DELLE_9749 and tr_A0A2Y9T6A9_A0A2Y9T6A9_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 150 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/3_mltree/Q5VW22.raxml.reduced.phy Alignment comprises 1 partitions and 272 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 272 / 272 Gaps: 10.11 % Invariant sites: 0.37 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/3_mltree/Q5VW22.raxml.rba Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 272 / 21760 [00:00:00] Data distribution: max. searches per worker: 4 Starting ML tree search with 20 distinct starting trees [00:00:00 -423793.419471] Initial branch length optimization [00:00:07 -347951.331100] Model parameter optimization (eps = 10.000000) [00:01:04 -346557.067157] AUTODETECT spr round 1 (radius: 5) [00:05:16 -217373.974660] AUTODETECT spr round 2 (radius: 10) [00:09:37 -148244.645797] AUTODETECT spr round 3 (radius: 15) [00:14:08 -114057.809056] AUTODETECT spr round 4 (radius: 20) [00:18:54 -106086.533602] AUTODETECT spr round 5 (radius: 25) [00:24:57 -100826.513582] SPR radius for FAST iterations: 25 (autodetect) [00:24:57 -100826.513582] Model parameter optimization (eps = 3.000000) [00:25:35 -100656.482696] FAST spr round 1 (radius: 25) [00:29:36 -80763.347363] FAST spr round 2 (radius: 25) [00:32:56 -77497.182022] FAST spr round 3 (radius: 25) [00:35:56 -77295.844074] FAST spr round 4 (radius: 25) [00:38:40 -77279.394485] FAST spr round 5 (radius: 25) [00:41:14 -77278.176450] FAST spr round 6 (radius: 25) [00:43:47 -77278.176041] Model parameter optimization (eps = 1.000000) [00:44:09 -77276.479691] SLOW spr round 1 (radius: 5) [00:47:37 -77252.805940] SLOW spr round 2 (radius: 5) [00:50:59 -77250.664189] SLOW spr round 3 (radius: 5) [00:54:13 -77250.664097] SLOW spr round 4 (radius: 10) [00:57:32 -77248.612690] SLOW spr round 5 (radius: 5) [01:01:37 -77245.982910] SLOW spr round 6 (radius: 5) [01:05:12 -77245.982825] SLOW spr round 7 (radius: 10) [01:08:43 -77245.982822] SLOW spr round 8 (radius: 15) [01:13:40 -77243.962986] SLOW spr round 9 (radius: 5) [01:17:54 -77243.962945] SLOW spr round 10 (radius: 10) [01:21:54 -77243.962943] SLOW spr round 11 (radius: 15) [01:23:56] [worker #2] ML tree search #3, logLikelihood: -77277.551355 [01:26:39 -77243.962942] SLOW spr round 12 (radius: 20) [01:31:47] [worker #3] ML tree search #4, logLikelihood: -77252.527465 [01:33:46 -77243.962941] SLOW spr round 13 (radius: 25) [01:39:42] [worker #4] ML tree search #5, logLikelihood: -78125.920496 [01:42:43 -77243.962940] Model parameter optimization (eps = 0.100000) [01:42:52] [worker #0] ML tree search #1, logLikelihood: -77243.894929 [01:42:52 -423054.342541] Initial branch length optimization [01:43:00 -345674.358681] Model parameter optimization (eps = 10.000000) [01:44:11 -344300.402057] AUTODETECT spr round 1 (radius: 5) [01:48:24 -209967.336563] AUTODETECT spr round 2 (radius: 10) [01:52:33 -141244.452867] AUTODETECT spr round 3 (radius: 15) [01:56:47 -111449.530540] AUTODETECT spr round 4 (radius: 20) [02:01:42 -101236.876368] AUTODETECT spr round 5 (radius: 25) [02:07:36 -96913.624097] SPR radius for FAST iterations: 25 (autodetect) [02:07:36 -96913.624097] Model parameter optimization (eps = 3.000000) [02:08:07 -96797.128834] FAST spr round 1 (radius: 25) [02:09:33] [worker #1] ML tree search #2, logLikelihood: -77248.866579 [02:12:32 -78942.815206] FAST spr round 2 (radius: 25) [02:15:43 -77420.899423] FAST spr round 3 (radius: 25) [02:18:34 -77293.258581] FAST spr round 4 (radius: 25) [02:21:16 -77279.922682] FAST spr round 5 (radius: 25) [02:23:45 -77279.922001] Model parameter optimization (eps = 1.000000) [02:24:07 -77272.761131] SLOW spr round 1 (radius: 5) [02:27:31 -77263.155603] SLOW spr round 2 (radius: 5) [02:30:53 -77262.355696] SLOW spr round 3 (radius: 5) [02:34:15 -77260.207147] SLOW spr round 4 (radius: 5) [02:37:29 -77260.206914] SLOW spr round 5 (radius: 10) [02:40:53 -77256.339167] SLOW spr round 6 (radius: 5) [02:44:56 -77256.338741] SLOW spr round 7 (radius: 10) [02:48:43 -77256.338729] SLOW spr round 8 (radius: 15) [02:53:15] [worker #2] ML tree search #8, logLikelihood: -77900.485706 [02:53:26 -77253.538232] SLOW spr round 9 (radius: 5) [02:57:38] [worker #3] ML tree search #9, logLikelihood: -77955.064251 [02:57:43 -77253.376539] SLOW spr round 10 (radius: 5) [03:01:26 -77253.375667] SLOW spr round 11 (radius: 10) [03:05:00 -77253.375664] SLOW spr round 12 (radius: 15) [03:09:47 -77253.375663] SLOW spr round 13 (radius: 20) [03:16:34 -77252.940052] SLOW spr round 14 (radius: 5) [03:20:54 -77252.799377] SLOW spr round 15 (radius: 5) [03:24:41 -77252.799345] SLOW spr round 16 (radius: 10) [03:28:17 -77252.799344] SLOW spr round 17 (radius: 15) [03:30:34] [worker #4] ML tree search #10, logLikelihood: -77257.893382 [03:31:35] [worker #1] ML tree search #7, logLikelihood: -77838.957534 [03:33:02 -77252.667999] SLOW spr round 18 (radius: 5) [03:37:19 -77252.667682] SLOW spr round 19 (radius: 10) [03:41:19 -77252.667681] SLOW spr round 20 (radius: 15) [03:46:01 -77252.667680] SLOW spr round 21 (radius: 20) [03:52:55 -77249.464742] SLOW spr round 22 (radius: 5) [03:57:16 -77249.464429] SLOW spr round 23 (radius: 10) [04:01:20 -77249.464422] SLOW spr round 24 (radius: 15) [04:06:00 -77248.404739] SLOW spr round 25 (radius: 5) [04:10:16 -77248.404340] SLOW spr round 26 (radius: 10) [04:14:16 -77248.404330] SLOW spr round 27 (radius: 15) [04:18:52 -77248.404329] SLOW spr round 28 (radius: 20) [04:21:58] [worker #3] ML tree search #14, logLikelihood: -77259.173115 [04:25:38 -77248.404328] SLOW spr round 29 (radius: 25) [04:34:06 -77248.404327] Model parameter optimization (eps = 0.100000) [04:34:14] [worker #0] ML tree search #6, logLikelihood: -77248.342975 [04:34:14 -422854.704927] Initial branch length optimization [04:34:21 -347314.367909] Model parameter optimization (eps = 10.000000) [04:35:28 -346019.286360] AUTODETECT spr round 1 (radius: 5) [04:39:44 -220406.991309] AUTODETECT spr round 2 (radius: 10) [04:44:04 -151899.243483] AUTODETECT spr round 3 (radius: 15) [04:48:37 -121435.241738] AUTODETECT spr round 4 (radius: 20) [04:53:46 -103702.913712] AUTODETECT spr round 5 (radius: 25) [04:57:00] [worker #2] ML tree search #13, logLikelihood: -78249.577642 [04:59:21 -101575.758690] SPR radius for FAST iterations: 25 (autodetect) [04:59:21 -101575.758690] Model parameter optimization (eps = 3.000000) [05:00:04 -101504.800727] FAST spr round 1 (radius: 25) [05:04:19 -78976.907017] FAST spr round 2 (radius: 25) [05:07:27 -77457.130595] FAST spr round 3 (radius: 25) [05:10:22 -77344.410536] FAST spr round 4 (radius: 25) [05:13:09 -77323.342176] FAST spr round 5 (radius: 25) [05:15:45 -77315.946959] FAST spr round 6 (radius: 25) [05:16:59] [worker #4] ML tree search #15, logLikelihood: -77256.059854 [05:18:13 -77315.946910] Model parameter optimization (eps = 1.000000) [05:18:36 -77309.562168] SLOW spr round 1 (radius: 5) [05:22:02 -77276.149044] SLOW spr round 2 (radius: 5) [05:25:24 -77274.911298] SLOW spr round 3 (radius: 5) [05:28:38 -77274.911047] SLOW spr round 4 (radius: 10) [05:31:55 -77274.300302] SLOW spr round 5 (radius: 5) [05:35:58 -77274.300237] SLOW spr round 6 (radius: 10) [05:37:15] [worker #1] ML tree search #12, logLikelihood: -77285.317242 [05:39:45 -77274.300235] SLOW spr round 7 (radius: 15) [05:44:28 -77274.300235] SLOW spr round 8 (radius: 20) [05:51:19 -77274.300234] SLOW spr round 9 (radius: 25) [05:59:33 -77274.300233] Model parameter optimization (eps = 0.100000) [05:59:44] [worker #0] ML tree search #11, logLikelihood: -77274.179391 [05:59:44 -422068.227402] Initial branch length optimization [05:59:51 -345928.263289] Model parameter optimization (eps = 10.000000) [06:01:00 -344526.923058] AUTODETECT spr round 1 (radius: 5) [06:05:13 -218181.361931] AUTODETECT spr round 2 (radius: 10) [06:09:33 -143304.093635] AUTODETECT spr round 3 (radius: 15) [06:14:17 -113381.178357] AUTODETECT spr round 4 (radius: 20) [06:19:19 -95917.186423] AUTODETECT spr round 5 (radius: 25) [06:20:13] [worker #2] ML tree search #18, logLikelihood: -77264.243069 [06:25:36 -93909.246889] SPR radius for FAST iterations: 25 (autodetect) [06:25:36 -93909.246889] Model parameter optimization (eps = 3.000000) [06:26:15 -93758.918894] FAST spr round 1 (radius: 25) [06:30:35 -79458.727254] FAST spr round 2 (radius: 25) [06:33:44 -77661.298206] FAST spr round 3 (radius: 25) [06:36:43 -77306.482760] FAST spr round 4 (radius: 25) [06:39:28 -77283.191821] FAST spr round 5 (radius: 25) [06:42:00 -77282.232463] FAST spr round 6 (radius: 25) [06:42:58] [worker #3] ML tree search #19, logLikelihood: -78124.224546 [06:44:27 -77282.232425] Model parameter optimization (eps = 1.000000) [06:44:47 -77279.374554] SLOW spr round 1 (radius: 5) [06:48:18 -77259.788888] SLOW spr round 2 (radius: 5) [06:51:34 -77259.139523] SLOW spr round 3 (radius: 5) [06:54:45 -77259.139457] SLOW spr round 4 (radius: 10) [06:57:08] [worker #4] ML tree search #20, logLikelihood: -77251.795218 [06:58:05 -77255.609310] SLOW spr round 5 (radius: 5) [07:02:05 -77255.609143] SLOW spr round 6 (radius: 10) [07:05:49 -77255.609139] SLOW spr round 7 (radius: 15) [07:10:29 -77255.230237] SLOW spr round 8 (radius: 5) [07:14:41 -77255.230226] SLOW spr round 9 (radius: 10) [07:18:40 -77255.230130] SLOW spr round 10 (radius: 15) [07:23:14 -77255.230127] SLOW spr round 11 (radius: 20) [07:30:17 -77255.230125] SLOW spr round 12 (radius: 25) [07:39:08 -77255.230122] Model parameter optimization (eps = 0.100000) [07:39:17] [worker #0] ML tree search #16, logLikelihood: -77255.142474 [08:14:29] [worker #1] ML tree search #17, logLikelihood: -77248.465460 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.210759,0.319937) (0.217263,0.488336) (0.367020,1.010485) (0.204958,2.222922) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -77243.894929 AIC score: 158497.789859 / AICc score: 8202557.789859 / BIC score: 165727.423002 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=272). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 300 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/3_mltree/Q5VW22.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/3_mltree/Q5VW22.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/3_mltree/Q5VW22.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/3_mltree/Q5VW22.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VW22/3_mltree/Q5VW22.raxml.log Analysis started: 01-Jul-2021 04:14:23 / finished: 01-Jul-2021 12:28:52 Elapsed time: 29669.349 seconds Consumed energy: 2181.527 Wh (= 11 km in an electric car, or 55 km with an e-scooter!)