RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 18:17:58 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5VTJ3/2_msa/Q5VTJ3_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5VTJ3/3_mltree/Q5VTJ3.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5VTJ3/4_raxmlng_ancestral/Q5VTJ3 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622647078 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5VTJ3/2_msa/Q5VTJ3_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 777 sites WARNING: Sequences tr_E9FR39_E9FR39_DAPPU_6669 and tr_A0A0P5DZD4_A0A0P5DZD4_9CRUS_35525 are exactly identical! WARNING: Sequences tr_A0A1D5P2A9_A0A1D5P2A9_CHICK_9031 and tr_G1KR49_G1KR49_ANOCA_28377 are exactly identical! WARNING: Sequences tr_A0A1D5P2A9_A0A1D5P2A9_CHICK_9031 and tr_G3VQ16_G3VQ16_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A1D5P2A9_A0A1D5P2A9_CHICK_9031 and tr_H1A3Z5_H1A3Z5_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A0A1D5P2A9_A0A1D5P2A9_CHICK_9031 and tr_U3JZW6_U3JZW6_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A1D5P2A9_A0A1D5P2A9_CHICK_9031 and tr_U3IN17_U3IN17_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5P2A9_A0A1D5P2A9_CHICK_9031 and tr_A0A1V4JZ19_A0A1V4JZ19_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5P2A9_A0A1D5P2A9_CHICK_9031 and tr_A0A218V4I4_A0A218V4I4_9PASE_299123 are exactly identical! WARNING: Sequences sp_Q8BRG6_KLH24_MOUSE_10090 and tr_G3I3I7_G3I3I7_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q8BRG6_KLH24_MOUSE_10090 and sp_Q56A24_KLH24_RAT_10116 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_G3RXB8_G3RXB8_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_F1PCW9_F1PCW9_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_H2Q0M8_H2Q0M8_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_F6ZQT2_F6ZQT2_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and sp_D3Z8N4_KLH20_RAT_10116 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_I3MPF4_I3MPF4_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A286XYU4_A0A286XYU4_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and sp_Q9Y2M5_KLH20_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_G7MFD2_G7MFD2_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_G3THE0_G3THE0_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_U3E5Z3_U3E5Z3_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A286ZUH2_A0A286ZUH2_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_G7NVI1_G7NVI1_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and sp_Q08DK3_KLH20_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A096N993_A0A096N993_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A0D9RH98_A0A0D9RH98_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A1S3F3N5_A0A1S3F3N5_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A1U7TCJ1_A0A1U7TCJ1_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A1U7QR99_A0A1U7QR99_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A2K5LWH2_A0A2K5LWH2_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A2K6DZA0_A0A2K6DZA0_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A2K5XEY3_A0A2K5XEY3_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A2R9B5T6_A0A2R9B5T6_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A2U4CQB4_A0A2U4CQB4_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A2U3WKD7_A0A2U3WKD7_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A2Y9DE19_A0A2Y9DE19_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A2Y9K325_A0A2Y9K325_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A2Y9MUS8_A0A2Y9MUS8_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A2Y9TK02_A0A2Y9TK02_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A384CIN9_A0A384CIN9_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Y007_M3Y007_MUSPF_9669 and tr_A0A383YRB4_A0A383YRB4_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2I3GY61_A0A2I3GY61_NOMLE_61853 and tr_H2N4D9_H2N4D9_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1R2C6_G1R2C6_NOMLE_61853 and tr_A0A2J8WH35_A0A2J8WH35_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1R2C6_G1R2C6_NOMLE_61853 and tr_K7DKV0_K7DKV0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R2C6_G1R2C6_NOMLE_61853 and sp_Q6TFL4_KLH24_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R2C6_G1R2C6_NOMLE_61853 and tr_G7NZ10_G7NZ10_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1R2C6_G1R2C6_NOMLE_61853 and tr_A0A096MTP2_A0A096MTP2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R2C6_G1R2C6_NOMLE_61853 and tr_A0A0D9RLE4_A0A0D9RLE4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R2C6_G1R2C6_NOMLE_61853 and tr_A0A2K5M8N4_A0A2K5M8N4_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1R2C6_G1R2C6_NOMLE_61853 and tr_A0A2K6A6W6_A0A2K6A6W6_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1R2C6_G1R2C6_NOMLE_61853 and tr_A0A2R9B4A0_A0A2R9B4A0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QHR9_G3QHR9_GORGO_9595 and tr_A0A2J8S122_A0A2J8S122_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QHR9_G3QHR9_GORGO_9595 and tr_H2QFB9_H2QFB9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QHR9_G3QHR9_GORGO_9595 and sp_Q14145_KEAP1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QHR9_G3QHR9_GORGO_9595 and tr_A0A2R9BRR8_A0A2R9BRR8_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QXM8_G3QXM8_GORGO_9595 and sp_Q6TDP4_KLH17_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RZ85_G3RZ85_GORGO_9595 and tr_I3MS17_I3MS17_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G3RZ85_G3RZ85_GORGO_9595 and tr_F7DUL3_F7DUL3_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3RZ85_G3RZ85_GORGO_9595 and tr_A0A1U7USP2_A0A1U7USP2_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1T4M8_G1T4M8_RABIT_9986 and tr_H0XRV6_H0XRV6_OTOGA_30611 are exactly identical! WARNING: Sequences tr_Q29KH6_Q29KH6_DROPS_46245 and tr_B4GS93_B4GS93_DROPE_7234 are exactly identical! WARNING: Sequences tr_K7CRZ0_K7CRZ0_PANTR_9598 and sp_Q9Y6Y0_NS1BP_HUMAN_9606 are exactly identical! WARNING: Sequences tr_K7CRZ0_K7CRZ0_PANTR_9598 and tr_A0A2R9ASQ6_A0A2R9ASQ6_PANPA_9597 are exactly identical! WARNING: Sequences tr_M4AVK2_M4AVK2_XIPMA_8083 and tr_A0A087X861_A0A087X861_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A158NLX1_A0A158NLX1_ATTCE_12957 and tr_A0A195F637_A0A195F637_9HYME_34720 are exactly identical! WARNING: Sequences tr_I3KIN4_I3KIN4_ORENI_8128 and tr_G3PQ87_G3PQ87_GASAC_69293 are exactly identical! WARNING: Sequences tr_H0VHD1_H0VHD1_CAVPO_10141 and tr_H0W217_H0W217_CAVPO_10141 are exactly identical! WARNING: Sequences tr_F6R585_F6R585_MACMU_9544 and tr_G7NXF4_G7NXF4_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6R585_F6R585_MACMU_9544 and tr_A0A096N133_A0A096N133_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6R585_F6R585_MACMU_9544 and tr_A0A0D9RKE3_A0A0D9RKE3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6R585_F6R585_MACMU_9544 and tr_A0A2K5N880_A0A2K5N880_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6R585_F6R585_MACMU_9544 and tr_A0A2K6C098_A0A2K6C098_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7NL03_G7NL03_MACMU_9544 and tr_G7PZ79_G7PZ79_MACFA_9541 are exactly identical! WARNING: Sequences tr_G7NL03_G7NL03_MACMU_9544 and tr_A0A0A0MWA2_A0A0A0MWA2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7NL03_G7NL03_MACMU_9544 and tr_A0A0D9R445_A0A0D9R445_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G7NL03_G7NL03_MACMU_9544 and tr_A0A2K5LJJ6_A0A2K5LJJ6_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7NL03_G7NL03_MACMU_9544 and tr_A0A2K6DK25_A0A2K6DK25_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7NL03_G7NL03_MACMU_9544 and tr_A0A2K5ZBD9_A0A2K5ZBD9_MANLE_9568 are exactly identical! WARNING: Sequences tr_H0Z577_H0Z577_TAEGU_59729 and tr_A0A091EDB7_A0A091EDB7_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0Z577_H0Z577_TAEGU_59729 and tr_A0A218UW70_A0A218UW70_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3JLX2_U3JLX2_FICAL_59894 and tr_A0A093QIJ7_A0A093QIJ7_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A2I3MDD5_A0A2I3MDD5_PAPAN_9555 and tr_A0A2K5KWQ1_A0A2K5KWQ1_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A091D8N2_A0A091D8N2_FUKDA_885580 and tr_A0A2U4CQB5_A0A2U4CQB5_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A091EEN4_A0A091EEN4_CORBR_85066 and tr_A0A091KC14_A0A091KC14_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A091EEN4_A0A091EEN4_CORBR_85066 and tr_A0A093S006_A0A093S006_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EEN4_A0A091EEN4_CORBR_85066 and tr_A0A091UVH5_A0A091UVH5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091EEN4_A0A091EEN4_CORBR_85066 and tr_A0A087QVK7_A0A087QVK7_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091EEN4_A0A091EEN4_CORBR_85066 and tr_A0A093HKX3_A0A093HKX3_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091EEN4_A0A091EEN4_CORBR_85066 and tr_A0A091WFX7_A0A091WFX7_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091EEN4_A0A091EEN4_CORBR_85066 and tr_A0A099Z1B2_A0A099Z1B2_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091EEN4_A0A091EEN4_CORBR_85066 and tr_A0A091G1W7_A0A091G1W7_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091EEN4_A0A091EEN4_CORBR_85066 and tr_A0A0A0B092_A0A0A0B092_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091EEN4_A0A091EEN4_CORBR_85066 and tr_A0A093GN74_A0A093GN74_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091IV31_A0A091IV31_EGRGA_188379 and tr_A0A091FRF4_A0A091FRF4_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091IV31_A0A091IV31_EGRGA_188379 and tr_A0A0A0A7A9_A0A0A0A7A9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091IV31_A0A091IV31_EGRGA_188379 and tr_A0A1V4K442_A0A1V4K442_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A091JNJ4_A0A091JNJ4_EGRGA_188379 and tr_A0A091USZ0_A0A091USZ0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JNJ4_A0A091JNJ4_EGRGA_188379 and tr_A0A087QSC0_A0A087QSC0_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JNJ4_A0A091JNJ4_EGRGA_188379 and tr_A0A0A0AV48_A0A0A0AV48_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091UR05_A0A091UR05_NIPNI_128390 and tr_A0A226MF51_A0A226MF51_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A091UR05_A0A091UR05_NIPNI_128390 and tr_A0A226PV88_A0A226PV88_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1S3LX01_A0A1S3LX01_SALSA_8030 and tr_A0A060VTZ5_A0A060VTZ5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A060WM49_A0A060WM49_ONCMY_8022 and tr_A0A2D0RAV1_A0A2D0RAV1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A226N104_A0A226N104_CALSU_9009 and tr_A0A226PDP4_A0A226PDP4_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NNV4_A0A226NNV4_CALSU_9009 and tr_A0A226PE23_A0A226PE23_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2K5L2L0_A0A2K5L2L0_CERAT_9531 and tr_A0A2K5XPK5_A0A2K5XPK5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4B5X7_A0A2U4B5X7_TURTR_9739 and tr_A0A2Y9M0V4_A0A2Y9M0V4_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4B5X7_A0A2U4B5X7_TURTR_9739 and tr_A0A383Z1K8_A0A383Z1K8_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 108 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5VTJ3/4_raxmlng_ancestral/Q5VTJ3.raxml.reduced.phy Alignment comprises 1 partitions and 777 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 777 Gaps: 49.06 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5VTJ3/4_raxmlng_ancestral/Q5VTJ3.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5VTJ3/3_mltree/Q5VTJ3.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 195 / 15600 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -224615.148891 [00:00:00 -224615.148891] Initial branch length optimization [00:00:01 -222975.298636] Model parameter optimization (eps = 0.100000) [00:01:00] Tree #1, final logLikelihood: -222145.362486 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.117520,0.488304) (0.120081,0.381608) (0.281055,0.673032) (0.481343,1.470118) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5VTJ3/4_raxmlng_ancestral/Q5VTJ3.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5VTJ3/4_raxmlng_ancestral/Q5VTJ3.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5VTJ3/4_raxmlng_ancestral/Q5VTJ3.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5VTJ3/4_raxmlng_ancestral/Q5VTJ3.raxml.log Analysis started: 02-Jun-2021 18:17:58 / finished: 02-Jun-2021 18:19:06 Elapsed time: 67.641 seconds Consumed energy: 4.449 Wh