RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 05-Jul-2021 18:09:44 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VT97/2_msa/Q5VT97_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VT97/3_mltree/Q5VT97 --seed 2 --threads 4 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VT97/2_msa/Q5VT97_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 175 sites WARNING: Sequences tr_B4QTA9_B4QTA9_DROSI_7240 and sp_Q9V9S7_SYDE_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QTA9_B4QTA9_DROSI_7240 and tr_B4IJ44_B4IJ44_DROSE_7238 are exactly identical! WARNING: Sequences tr_E2AF34_E2AF34_CAMFO_104421 and tr_A0A158NEN8_A0A158NEN8_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2AF34_E2AF34_CAMFO_104421 and tr_F4WJV2_F4WJV2_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2AF34_E2AF34_CAMFO_104421 and tr_E2BI00_E2BI00_HARSA_610380 are exactly identical! WARNING: Sequences tr_E2AF34_E2AF34_CAMFO_104421 and tr_A0A195DE38_A0A195DE38_9HYME_471704 are exactly identical! WARNING: Sequences tr_E2AF34_E2AF34_CAMFO_104421 and tr_A0A195BCG8_A0A195BCG8_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2AF34_E2AF34_CAMFO_104421 and tr_A0A195C6X3_A0A195C6X3_9HYME_456900 are exactly identical! WARNING: Sequences tr_E1C0M5_E1C0M5_CHICK_9031 and tr_G1N7L2_G1N7L2_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1C0M5_E1C0M5_CHICK_9031 and tr_K7FJ81_K7FJ81_PELSI_13735 are exactly identical! WARNING: Sequences tr_E1C0M5_E1C0M5_CHICK_9031 and tr_H0ZIB3_H0ZIB3_TAEGU_59729 are exactly identical! WARNING: Sequences tr_E1C0M5_E1C0M5_CHICK_9031 and tr_A0A087R3G0_A0A087R3G0_APTFO_9233 are exactly identical! WARNING: Sequences tr_E1C0M5_E1C0M5_CHICK_9031 and tr_A0A093I795_A0A093I795_STRCA_441894 are exactly identical! WARNING: Sequences tr_E1C0M5_E1C0M5_CHICK_9031 and tr_A0A091W480_A0A091W480_OPIHO_30419 are exactly identical! WARNING: Sequences tr_E1C0M5_E1C0M5_CHICK_9031 and tr_A0A099ZDV9_A0A099ZDV9_TINGU_94827 are exactly identical! WARNING: Sequences tr_E1C0M5_E1C0M5_CHICK_9031 and tr_A0A2I0LZ63_A0A2I0LZ63_COLLI_8932 are exactly identical! WARNING: Sequences tr_E1C0M5_E1C0M5_CHICK_9031 and tr_A0A091J7T6_A0A091J7T6_CALAN_9244 are exactly identical! WARNING: Sequences tr_E1C0M5_E1C0M5_CHICK_9031 and tr_A0A1V4JRJ9_A0A1V4JRJ9_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1NB60_F1NB60_CHICK_9031 and tr_U3IJB0_U3IJB0_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NB60_F1NB60_CHICK_9031 and tr_A0A0Q3MG01_A0A0Q3MG01_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1NB60_F1NB60_CHICK_9031 and tr_A0A091UP54_A0A091UP54_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F1NB60_F1NB60_CHICK_9031 and tr_A0A087QU60_A0A087QU60_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NB60_F1NB60_CHICK_9031 and tr_A0A091WRJ4_A0A091WRJ4_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1NB60_F1NB60_CHICK_9031 and tr_A0A0A0A3R2_A0A0A0A3R2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NB60_F1NB60_CHICK_9031 and tr_A0A226N478_A0A226N478_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NB60_F1NB60_CHICK_9031 and tr_A0A226PWX7_A0A226PWX7_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q8C0D4_RHG12_MOUSE_10090 and tr_A0A0G2K1Z2_A0A0G2K1Z2_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XUS8_M3XUS8_MUSPF_9669 and tr_G1SMT6_G1SMT6_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3XUS8_M3XUS8_MUSPF_9669 and tr_F6U575_F6U575_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3XUS8_M3XUS8_MUSPF_9669 and tr_H0VW81_H0VW81_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3XUS8_M3XUS8_MUSPF_9669 and tr_G5B625_G5B625_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3XUS8_M3XUS8_MUSPF_9669 and tr_G1LR46_G1LR46_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XUS8_M3XUS8_MUSPF_9669 and tr_A0A091D0P4_A0A091D0P4_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3XUS8_M3XUS8_MUSPF_9669 and tr_A0A1S3F1Q1_A0A1S3F1Q1_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3XUS8_M3XUS8_MUSPF_9669 and tr_A0A2Y9G080_A0A2Y9G080_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3XUS8_M3XUS8_MUSPF_9669 and tr_A0A2Y9IW58_A0A2Y9IW58_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XUS8_M3XUS8_MUSPF_9669 and tr_A0A2Y9LBZ9_A0A2Y9LBZ9_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3XUS8_M3XUS8_MUSPF_9669 and tr_A0A384CLN6_A0A384CLN6_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Y2D8_M3Y2D8_MUSPF_9669 and tr_A0A2Y9IZU8_A0A2Y9IZU8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_B4JTR4_B4JTR4_DROGR_7222 and tr_A0A0Q9WTW9_A0A0Q9WTW9_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4JTR4_B4JTR4_DROGR_7222 and tr_B4K857_B4K857_DROMO_7230 are exactly identical! WARNING: Sequences tr_A0A2I3H2B1_A0A2I3H2B1_NOMLE_61853 and tr_G3RAD4_G3RAD4_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3H2B1_A0A2I3H2B1_NOMLE_61853 and tr_H2PMI5_H2PMI5_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3H2B1_A0A2I3H2B1_NOMLE_61853 and tr_H2R2E9_H2R2E9_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3H2B1_A0A2I3H2B1_NOMLE_61853 and sp_P52757_CHIO_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3H2B1_A0A2I3H2B1_NOMLE_61853 and tr_A0A1D5QMR4_A0A1D5QMR4_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3H2B1_A0A2I3H2B1_NOMLE_61853 and tr_F7DU99_F7DU99_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3H2B1_A0A2I3H2B1_NOMLE_61853 and tr_A0A0D9RPG7_A0A0D9RPG7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3H2B1_A0A2I3H2B1_NOMLE_61853 and tr_A0A2K5ZMB3_A0A2K5ZMB3_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3H2B1_A0A2I3H2B1_NOMLE_61853 and tr_A0A2R9AIP2_A0A2R9AIP2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RCL6_G1RCL6_NOMLE_61853 and tr_H2P7H5_H2P7H5_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RG60_G1RG60_NOMLE_61853 and tr_G3QK10_G3QK10_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RG60_G1RG60_NOMLE_61853 and tr_H2PZB3_H2PZB3_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RG60_G1RG60_NOMLE_61853 and tr_A0A2R8Z9S0_A0A2R8Z9S0_PANPA_9597 are exactly identical! WARNING: Sequences tr_B6QT21_B6QT21_TALMQ_441960 and tr_A0A093XW31_A0A093XW31_TALMA_1077442 are exactly identical! WARNING: Sequences tr_A0A2I2ZQG0_A0A2I2ZQG0_GORGO_9595 and tr_A0A2I3SG90_A0A2I3SG90_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZQG0_A0A2I2ZQG0_GORGO_9595 and sp_Q8IWW6_RHG12_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZQG0_A0A2I2ZQG0_GORGO_9595 and tr_A0A2R9A7K9_A0A2R9A7K9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R4S4_G3R4S4_GORGO_9595 and tr_H2QFL6_H2QFL6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R4S4_G3R4S4_GORGO_9595 and sp_Q6ZW31_SYDE1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G2WXY9_G2WXY9_VERDV_498257 and tr_A0A0G4LJR4_A0A0G4LJR4_9PEZI_100787 are exactly identical! WARNING: Sequences tr_G1N9T4_G1N9T4_MELGA_9103 and tr_A0A226N6Z0_A0A226N6Z0_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A0R3NHX1_A0A0R3NHX1_DROPS_46245 and tr_A0A0Q9X1S6_A0A0Q9X1S6_DROWI_7260 are exactly identical! WARNING: Sequences tr_A0A0R3NHX1_A0A0R3NHX1_DROPS_46245 and tr_B4G343_B4G343_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A0R3NHX1_A0A0R3NHX1_DROPS_46245 and tr_A0A0L0CGX8_A0A0L0CGX8_LUCCU_7375 are exactly identical! WARNING: Sequences tr_A0A0R3NHX1_A0A0R3NHX1_DROPS_46245 and tr_A0A0M5IZY9_A0A0M5IZY9_DROBS_30019 are exactly identical! WARNING: Sequences tr_A0A0R3NHX1_A0A0R3NHX1_DROPS_46245 and tr_A0A1W4VZE5_A0A1W4VZE5_DROFC_30025 are exactly identical! WARNING: Sequences tr_B8NUZ1_B8NUZ1_ASPFN_332952 and tr_Q2U511_Q2U511_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8NUZ1_B8NUZ1_ASPFN_332952 and tr_A0A0F0IJ46_A0A0F0IJ46_ASPPU_1403190 are exactly identical! WARNING: Sequences tr_B8NUZ1_B8NUZ1_ASPFN_332952 and tr_A0A1S9DIS5_A0A1S9DIS5_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_B0W0W5_B0W0W5_CULQU_7176 and tr_B0WJ60_B0WJ60_CULQU_7176 are exactly identical! WARNING: Sequences tr_W5PWB8_W5PWB8_SHEEP_9940 and tr_A6QPU2_A6QPU2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F9G5U2_F9G5U2_FUSOF_660025 and tr_W7LU70_W7LU70_GIBM7_334819 are exactly identical! WARNING: Sequences tr_F9G5U2_F9G5U2_FUSOF_660025 and tr_A0A0D2XGW7_A0A0D2XGW7_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9G5U2_F9G5U2_FUSOF_660025 and tr_S0E5X2_S0E5X2_GIBF5_1279085 are exactly identical! WARNING: Sequences tr_F9G5U2_F9G5U2_FUSOF_660025 and tr_N4TH49_N4TH49_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9G5U2_F9G5U2_FUSOF_660025 and tr_X0D5Y6_X0D5Y6_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9G5U2_F9G5U2_FUSOF_660025 and tr_A0A2H3TLX3_A0A2H3TLX3_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9G5U2_F9G5U2_FUSOF_660025 and tr_A0A2H3GQQ3_A0A2H3GQQ3_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F9G5U2_F9G5U2_FUSOF_660025 and tr_A0A2K0WJY1_A0A2K0WJY1_GIBNY_42673 are exactly identical! WARNING: Sequences tr_F9G5U2_F9G5U2_FUSOF_660025 and tr_A0A365NCN7_A0A365NCN7_GIBIN_948311 are exactly identical! WARNING: Sequences tr_A0A087ZNW1_A0A087ZNW1_APIME_7460 and tr_A0A0L7R0K6_A0A0L7R0K6_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A087ZNW1_A0A087ZNW1_APIME_7460 and tr_A0A2A3EQ60_A0A2A3EQ60_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A087ZW44_A0A087ZW44_APIME_7460 and tr_A0A2A3EL35_A0A2A3EL35_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NEC6_A0A158NEC6_ATTCE_12957 and tr_A0A195FK77_A0A195FK77_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NEC6_A0A158NEC6_ATTCE_12957 and tr_A0A195CAZ5_A0A195CAZ5_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A158NHH0_A0A158NHH0_ATTCE_12957 and tr_F4WVN5_F4WVN5_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NHH0_A0A158NHH0_ATTCE_12957 and tr_A0A151XFC1_A0A151XFC1_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NHH0_A0A158NHH0_ATTCE_12957 and tr_A0A195E2V6_A0A195E2V6_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NHH0_A0A158NHH0_ATTCE_12957 and tr_A0A195AV63_A0A195AV63_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NHH0_A0A158NHH0_ATTCE_12957 and tr_A0A195FW50_A0A195FW50_9HYME_34720 are exactly identical! WARNING: Sequences tr_H0XJ59_H0XJ59_OTOGA_30611 and tr_A0A3Q0DYN3_A0A3Q0DYN3_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A1D2F5_A1D2F5_NEOFI_331117 and tr_A0A0K8LN01_A0A0K8LN01_9EURO_91492 are exactly identical! WARNING: Sequences tr_A1D2F5_A1D2F5_NEOFI_331117 and tr_A0A0S7E134_A0A0S7E134_9EURO_293939 are exactly identical! WARNING: Sequences tr_A0A1D5RL23_A0A1D5RL23_MACMU_9544 and tr_G8F6D6_G8F6D6_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5RL23_A0A1D5RL23_MACMU_9544 and tr_A0A2K6E0C8_A0A2K6E0C8_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7H6M3_F7H6M3_MACMU_9544 and tr_G7PKJ1_G7PKJ1_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7H6M3_F7H6M3_MACMU_9544 and tr_A0A2K5ML85_A0A2K5ML85_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7H6M3_F7H6M3_MACMU_9544 and tr_A0A2K5ZUS6_A0A2K5ZUS6_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7HHG8_F7HHG8_MACMU_9544 and tr_G7PEP6_G7PEP6_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7HHG8_F7HHG8_MACMU_9544 and tr_A0A096P414_A0A096P414_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7HHG8_F7HHG8_MACMU_9544 and tr_A0A0D9RGS7_A0A0D9RGS7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7HHG8_F7HHG8_MACMU_9544 and tr_A0A2K5KWI7_A0A2K5KWI7_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7HHG8_F7HHG8_MACMU_9544 and tr_A0A2K6AP36_A0A2K6AP36_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7HHG8_F7HHG8_MACMU_9544 and tr_A0A2K5ZPJ2_A0A2K5ZPJ2_MANLE_9568 are exactly identical! WARNING: Sequences tr_G7XFP6_G7XFP6_ASPKW_1033177 and tr_A0A146FTD1_A0A146FTD1_9EURO_1069201 are exactly identical! WARNING: Sequences tr_G7XFP6_G7XFP6_ASPKW_1033177 and tr_A0A317UYD0_A0A317UYD0_9EURO_1448314 are exactly identical! WARNING: Sequences tr_G7XNV7_G7XNV7_ASPKW_1033177 and tr_G3YHD0_G3YHD0_ASPNA_380704 are exactly identical! WARNING: Sequences tr_G7XNV7_G7XNV7_ASPKW_1033177 and tr_A0A100IIE9_A0A100IIE9_ASPNG_5061 are exactly identical! WARNING: Sequences tr_G7XNV7_G7XNV7_ASPKW_1033177 and tr_A0A146FSA6_A0A146FSA6_9EURO_1069201 are exactly identical! WARNING: Sequences tr_G7XNV7_G7XNV7_ASPKW_1033177 and tr_A0A1L9NPF1_A0A1L9NPF1_ASPTU_767770 are exactly identical! WARNING: Sequences tr_G7XNV7_G7XNV7_ASPKW_1033177 and tr_A0A317W6I3_A0A317W6I3_9EURO_1448314 are exactly identical! WARNING: Sequences tr_G7XNV7_G7XNV7_ASPKW_1033177 and tr_A0A319AFC5_A0A319AFC5_9EURO_1450533 are exactly identical! WARNING: Sequences tr_G5BVQ6_G5BVQ6_HETGA_10181 and tr_G3UMM3_G3UMM3_LOXAF_9785 are exactly identical! WARNING: Sequences tr_H0YRY0_H0YRY0_TAEGU_59729 and tr_A0A093SPS9_A0A093SPS9_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0YRY0_H0YRY0_TAEGU_59729 and tr_A0A218V6V6_A0A218V6V6_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0Z7S9_H0Z7S9_TAEGU_59729 and tr_A0A218VFN9_A0A218VFN9_9PASE_299123 are exactly identical! WARNING: Sequences tr_G3YBR1_G3YBR1_ASPNA_380704 and tr_A0A318ZW26_A0A318ZW26_9EURO_1450533 are exactly identical! WARNING: Sequences tr_G7NTK7_G7NTK7_MACFA_9541 and tr_A0A096MKT8_A0A096MKT8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7NTK7_G7NTK7_MACFA_9541 and tr_A0A0D9S6V6_A0A0D9S6V6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G7NTK7_G7NTK7_MACFA_9541 and tr_A0A2K6DNH5_A0A2K6DNH5_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7NTK7_G7NTK7_MACFA_9541 and tr_A0A2K6A516_A0A2K6A516_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I2U3J3_A0A2I2U3J3_FELCA_9685 and tr_A0A2U3ZI73_A0A2U3ZI73_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A2I2U3J3_A0A2I2U3J3_FELCA_9685 and tr_A0A2U3XRV5_A0A2U3XRV5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_U3JY17_U3JY17_FICAL_59894 and tr_A0A0Q3U1T7_A0A0Q3U1T7_AMAAE_12930 are exactly identical! WARNING: Sequences tr_U3JY17_U3JY17_FICAL_59894 and tr_A0A091ELG4_A0A091ELG4_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3JY17_U3JY17_FICAL_59894 and tr_A0A091UZ26_A0A091UZ26_NIPNI_128390 are exactly identical! WARNING: Sequences tr_U3JY17_U3JY17_FICAL_59894 and tr_A0A091FPC6_A0A091FPC6_9AVES_55661 are exactly identical! WARNING: Sequences tr_U3JY17_U3JY17_FICAL_59894 and tr_A0A093I9C4_A0A093I9C4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_U3IQP0_U3IQP0_ANAPL_8839 and tr_A0A226NAZ0_A0A226NAZ0_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A015K1H4_A0A015K1H4_9GLOM_1432141 and tr_A0A2H5TGS1_A0A2H5TGS1_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A084Q9G0_A0A084Q9G0_STAC4_1283841 and tr_A0A084RMC6_A0A084RMC6_STACH_1283842 are exactly identical! WARNING: Sequences tr_A0A0D9R1H1_A0A0D9R1H1_CHLSB_60711 and tr_A0A2K5NM74_A0A2K5NM74_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D9R1H1_A0A0D9R1H1_CHLSB_60711 and tr_A0A2K6AB90_A0A2K6AB90_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0F8UZE1_A0A0F8UZE1_9EURO_308745 and tr_A0A2T5M075_A0A2T5M075_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0A1N5L6_A0A0A1N5L6_9FUNG_58291 and tr_A0A2G4T3E2_A0A2G4T3E2_9FUNG_1340429 are exactly identical! WARNING: Sequences tr_A0A0A1N5L6_A0A0A1N5L6_9FUNG_58291 and tr_A0A367JZ42_A0A367JZ42_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A151NVL7_A0A151NVL7_ALLMI_8496 and tr_A0A3Q0FPL2_A0A3Q0FPL2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091JH32_A0A091JH32_EGRGA_188379 and tr_A0A091UU05_A0A091UU05_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A194R1T4_A0A194R1T4_PAPMA_76193 and tr_A0A194Q7N6_A0A194Q7N6_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A0G4NZV3_A0A0G4NZV3_PENCA_1429867 and tr_A0A135LCW8_A0A135LCW8_PENPA_5078 are exactly identical! WARNING: Sequences tr_A0A0G4NZV3_A0A0G4NZV3_PENCA_1429867 and tr_A0A1V6RDS4_A0A1V6RDS4_9EURO_60172 are exactly identical! WARNING: Sequences tr_A0A2I0MQY7_A0A2I0MQY7_COLLI_8932 and tr_A0A1V4KLQ1_A0A1V4KLQ1_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0P1B9Q5_A0A0P1B9Q5_9BASI_401625 and tr_A0A316VW51_A0A316VW51_9BASI_1522189 are exactly identical! WARNING: Sequences tr_A0A101MM49_A0A101MM49_9EURO_48697 and tr_A0A1V6NFI7_A0A1V6NFI7_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A100IP11_A0A100IP11_ASPNG_5061 and tr_A0A1L9N2P4_A0A1L9N2P4_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A0A1C3YM95_A0A1C3YM95_GIBZE_229533 and tr_A0A2T4GPA3_A0A2T4GPA3_FUSCU_5516 are exactly identical! WARNING: Sequences tr_A0A1S3PHU3_A0A1S3PHU3_SALSA_8030 and tr_A0A060WII6_A0A060WII6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3S4Q6_A0A1S3S4Q6_SALSA_8030 and tr_A0A060X0G6_A0A060X0G6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1R3S2B7_A0A1R3S2B7_ASPC5_602072 and tr_A0A317X968_A0A317X968_9EURO_1450535 are exactly identical! WARNING: Sequences tr_A0A2I4AJI9_A0A2I4AJI9_9TELE_52670 and tr_A0A2I4CF58_A0A2I4CF58_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A2D0QA06_A0A2D0QA06_ICTPU_7998 and tr_A0A2D0QA24_A0A2D0QA24_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QA06_A0A2D0QA06_ICTPU_7998 and tr_A0A2D0QBP8_A0A2D0QBP8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QA06_A0A2D0QA06_ICTPU_7998 and tr_A0A2D0QBQ2_A0A2D0QBQ2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S770_A0A2D0S770_ICTPU_7998 and tr_A0A2D0S777_A0A2D0S777_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S770_A0A2D0S770_ICTPU_7998 and tr_A0A2D0S781_A0A2D0S781_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S770_A0A2D0S770_ICTPU_7998 and tr_A0A2D0S787_A0A2D0S787_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SJH3_A0A2D0SJH3_ICTPU_7998 and tr_A0A2D0SJI5_A0A2D0SJI5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SJH3_A0A2D0SJH3_ICTPU_7998 and tr_A0A2D0SK39_A0A2D0SK39_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2I1GL60_A0A2I1GL60_9GLOM_588596 and tr_A0A2H5SRZ8_A0A2H5SRZ8_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A2U4CMP2_A0A2U4CMP2_TURTR_9739 and tr_A0A2Y9M4Y1_A0A2Y9M4Y1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CMP2_A0A2U4CMP2_TURTR_9739 and tr_A0A383ZEM9_A0A383ZEM9_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U3WI15_A0A2U3WI15_ODORO_9708 and tr_A0A2U3Z7Q7_A0A2U3Z7Q7_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9NQT6_A0A2Y9NQT6_DELLE_9749 and tr_A0A2Y9S7I6_A0A2Y9S7I6_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 164 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VT97/3_mltree/Q5VT97.raxml.reduced.phy Alignment comprises 1 partitions and 175 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 175 / 175 Gaps: 1.88 % Invariant sites: 0.57 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VT97/3_mltree/Q5VT97.raxml.rba Parallelization scheme autoconfig: 4 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 175 / 14000 [00:00:00] Data distribution: max. searches per worker: 5 Starting ML tree search with 20 distinct starting trees [00:00:00 -324867.632006] Initial branch length optimization [00:00:05 -272403.482965] Model parameter optimization (eps = 10.000000) [00:00:39 -271854.599259] AUTODETECT spr round 1 (radius: 5) [00:03:15 -179347.390115] AUTODETECT spr round 2 (radius: 10) [00:05:59 -122949.750491] AUTODETECT spr round 3 (radius: 15) [00:08:51 -95264.018308] AUTODETECT spr round 4 (radius: 20) [00:12:13 -82786.999856] AUTODETECT spr round 5 (radius: 25) [00:16:03 -78030.700699] SPR radius for FAST iterations: 25 (autodetect) [00:16:03 -78030.700699] Model parameter optimization (eps = 3.000000) [00:16:20 -78022.514252] FAST spr round 1 (radius: 25) [00:18:56 -66998.677362] FAST spr round 2 (radius: 25) [00:21:04 -66324.900281] FAST spr round 3 (radius: 25) [00:22:55 -66272.206913] FAST spr round 4 (radius: 25) [00:24:33 -66265.378389] FAST spr round 5 (radius: 25) [00:26:08 -66265.377459] Model parameter optimization (eps = 1.000000) [00:26:28 -66261.637957] SLOW spr round 1 (radius: 5) [00:28:34 -66244.350433] SLOW spr round 2 (radius: 5) [00:30:40 -66238.347223] SLOW spr round 3 (radius: 5) [00:32:39 -66238.346503] SLOW spr round 4 (radius: 10) [00:34:39 -66238.139927] SLOW spr round 5 (radius: 5) [00:37:10 -66238.139915] SLOW spr round 6 (radius: 10) [00:39:23 -66238.139915] SLOW spr round 7 (radius: 15) [00:42:28 -66236.791509] SLOW spr round 8 (radius: 5) [00:45:08 -66236.791503] SLOW spr round 9 (radius: 10) [00:47:28 -66236.791502] SLOW spr round 10 (radius: 15) [00:50:25 -66236.791502] SLOW spr round 11 (radius: 20) [00:54:11] [worker #2] ML tree search #3, logLikelihood: -66244.082306 [00:54:37] [worker #1] ML tree search #2, logLikelihood: -66263.665033 [00:55:09 -66236.791502] SLOW spr round 12 (radius: 25) [01:01:23 -66236.791502] Model parameter optimization (eps = 0.100000) [01:01:37] [worker #0] ML tree search #1, logLikelihood: -66231.033181 [01:01:37 -324838.847242] Initial branch length optimization [01:01:42 -272718.418984] Model parameter optimization (eps = 10.000000) [01:02:17 -272188.710707] AUTODETECT spr round 1 (radius: 5) [01:04:48] [worker #3] ML tree search #4, logLikelihood: -66245.521163 [01:04:54 -177417.508939] AUTODETECT spr round 2 (radius: 10) [01:07:38 -132245.495039] AUTODETECT spr round 3 (radius: 15) [01:10:36 -101885.496709] AUTODETECT spr round 4 (radius: 20) [01:13:57 -89503.292852] AUTODETECT spr round 5 (radius: 25) [01:17:39 -83456.969279] SPR radius for FAST iterations: 25 (autodetect) [01:17:39 -83456.969279] Model parameter optimization (eps = 3.000000) [01:17:57 -83451.566329] FAST spr round 1 (radius: 25) [01:20:26 -67787.372960] FAST spr round 2 (radius: 25) [01:22:21 -66361.615274] FAST spr round 3 (radius: 25) [01:24:08 -66294.097501] FAST spr round 4 (radius: 25) [01:25:48 -66287.054025] FAST spr round 5 (radius: 25) [01:27:22 -66286.250879] FAST spr round 6 (radius: 25) [01:28:53 -66286.250070] Model parameter optimization (eps = 1.000000) [01:29:06 -66274.545334] SLOW spr round 1 (radius: 5) [01:31:14 -66246.463608] SLOW spr round 2 (radius: 5) [01:33:14 -66246.397199] SLOW spr round 3 (radius: 10) [01:35:12 -66245.399439] SLOW spr round 4 (radius: 5) [01:37:44 -66244.796578] SLOW spr round 5 (radius: 5) [01:39:56 -66244.796552] SLOW spr round 6 (radius: 10) [01:41:59 -66244.796543] SLOW spr round 7 (radius: 15) [01:45:08 -66243.462586] SLOW spr round 8 (radius: 5) [01:47:46 -66243.462580] SLOW spr round 9 (radius: 10) [01:50:03 -66243.462579] SLOW spr round 10 (radius: 15) [01:53:01 -66243.462579] SLOW spr round 11 (radius: 20) [01:55:27] [worker #2] ML tree search #7, logLikelihood: -66246.134675 [01:56:53] [worker #1] ML tree search #6, logLikelihood: -66258.324266 [01:57:48 -66243.462578] SLOW spr round 12 (radius: 25) [02:00:31] [worker #3] ML tree search #8, logLikelihood: -66265.498390 [02:04:16 -66243.462578] Model parameter optimization (eps = 0.100000) [02:04:21] [worker #0] ML tree search #5, logLikelihood: -66243.433701 [02:04:22 -326241.636529] Initial branch length optimization [02:04:27 -274373.274096] Model parameter optimization (eps = 10.000000) [02:05:01 -273681.953431] AUTODETECT spr round 1 (radius: 5) [02:07:36 -169455.021451] AUTODETECT spr round 2 (radius: 10) [02:10:25 -119943.014862] AUTODETECT spr round 3 (radius: 15) [02:13:13 -99228.535650] AUTODETECT spr round 4 (radius: 20) [02:16:36 -90389.581158] AUTODETECT spr round 5 (radius: 25) [02:20:36 -85582.130738] SPR radius for FAST iterations: 25 (autodetect) [02:20:36 -85582.130738] Model parameter optimization (eps = 3.000000) [02:20:54 -85562.847084] FAST spr round 1 (radius: 25) [02:23:27 -67579.699992] FAST spr round 2 (radius: 25) [02:25:25 -66368.990380] FAST spr round 3 (radius: 25) [02:27:15 -66296.824301] FAST spr round 4 (radius: 25) [02:28:56 -66287.691288] FAST spr round 5 (radius: 25) [02:30:31 -66287.120354] FAST spr round 6 (radius: 25) [02:32:05 -66287.119253] Model parameter optimization (eps = 1.000000) [02:32:17 -66286.114605] SLOW spr round 1 (radius: 5) [02:34:27 -66262.238629] SLOW spr round 2 (radius: 5) [02:36:33 -66253.249160] SLOW spr round 3 (radius: 5) [02:38:35 -66249.178837] SLOW spr round 4 (radius: 5) [02:40:32 -66249.177954] SLOW spr round 5 (radius: 10) [02:42:33 -66244.303119] SLOW spr round 6 (radius: 5) [02:45:09 -66242.559631] SLOW spr round 7 (radius: 5) [02:47:21 -66242.558110] SLOW spr round 8 (radius: 10) [02:47:58] [worker #2] ML tree search #11, logLikelihood: -66233.471200 [02:49:24 -66242.557446] SLOW spr round 9 (radius: 15) [02:52:26 -66241.217935] SLOW spr round 10 (radius: 5) [02:54:27] [worker #1] ML tree search #10, logLikelihood: -66239.307662 [02:55:05 -66241.217796] SLOW spr round 11 (radius: 10) [02:57:24 -66241.217737] SLOW spr round 12 (radius: 15) [02:59:00] [worker #3] ML tree search #12, logLikelihood: -66241.591441 [03:00:17 -66241.217710] SLOW spr round 13 (radius: 20) [03:04:53 -66241.217699] SLOW spr round 14 (radius: 25) [03:10:47 -66241.217693] Model parameter optimization (eps = 0.100000) [03:10:58] [worker #0] ML tree search #9, logLikelihood: -66240.908917 [03:10:58 -326275.029368] Initial branch length optimization [03:11:04 -275017.802922] Model parameter optimization (eps = 10.000000) [03:11:43 -274477.526921] AUTODETECT spr round 1 (radius: 5) [03:14:20 -179014.798795] AUTODETECT spr round 2 (radius: 10) [03:17:10 -123812.500093] AUTODETECT spr round 3 (radius: 15) [03:19:59 -100268.594099] AUTODETECT spr round 4 (radius: 20) [03:23:03 -87396.937981] AUTODETECT spr round 5 (radius: 25) [03:26:39 -83166.501579] SPR radius for FAST iterations: 25 (autodetect) [03:26:39 -83166.501579] Model parameter optimization (eps = 3.000000) [03:26:57 -83158.575675] FAST spr round 1 (radius: 25) [03:29:34 -67525.579722] FAST spr round 2 (radius: 25) [03:31:35 -66397.515492] FAST spr round 3 (radius: 25) [03:33:23 -66294.503644] FAST spr round 4 (radius: 25) [03:35:04 -66276.134938] FAST spr round 5 (radius: 25) [03:36:38 -66275.742236] FAST spr round 6 (radius: 25) [03:38:11 -66275.741668] Model parameter optimization (eps = 1.000000) [03:38:24 -66269.450033] SLOW spr round 1 (radius: 5) [03:40:29 -66258.339346] SLOW spr round 2 (radius: 5) [03:42:27 -66258.326688] SLOW spr round 3 (radius: 10) [03:44:27 -66254.176813] SLOW spr round 4 (radius: 5) [03:45:48] [worker #2] ML tree search #15, logLikelihood: -66270.261414 [03:46:58 -66254.176796] SLOW spr round 5 (radius: 10) [03:49:12 -66254.176796] SLOW spr round 6 (radius: 15) [03:52:12 -66254.176796] SLOW spr round 7 (radius: 20) [03:56:27] [worker #1] ML tree search #14, logLikelihood: -66245.267135 [03:57:07 -66254.176796] SLOW spr round 8 (radius: 25) [04:00:48] [worker #3] ML tree search #16, logLikelihood: -66251.370973 [04:03:28 -66254.176796] Model parameter optimization (eps = 0.100000) [04:03:32] [worker #0] ML tree search #13, logLikelihood: -66254.173989 [04:03:32 -324044.142077] Initial branch length optimization [04:03:38 -271916.225104] Model parameter optimization (eps = 10.000000) [04:04:13 -271396.690194] AUTODETECT spr round 1 (radius: 5) [04:06:49 -173101.375582] AUTODETECT spr round 2 (radius: 10) [04:09:34 -127840.826550] AUTODETECT spr round 3 (radius: 15) [04:12:29 -98055.950281] AUTODETECT spr round 4 (radius: 20) [04:15:48 -84542.522062] AUTODETECT spr round 5 (radius: 25) [04:19:23 -80851.417578] SPR radius for FAST iterations: 25 (autodetect) [04:19:23 -80851.417578] Model parameter optimization (eps = 3.000000) [04:19:38 -80843.016971] FAST spr round 1 (radius: 25) [04:22:19 -66924.412209] FAST spr round 2 (radius: 25) [04:24:26 -66343.474333] FAST spr round 3 (radius: 25) [04:26:14 -66310.243276] FAST spr round 4 (radius: 25) [04:27:54 -66289.086882] FAST spr round 5 (radius: 25) [04:29:27 -66287.636333] FAST spr round 6 (radius: 25) [04:31:00 -66287.635424] Model parameter optimization (eps = 1.000000) [04:31:12 -66282.217149] SLOW spr round 1 (radius: 5) [04:33:19 -66261.851682] SLOW spr round 2 (radius: 5) [04:35:19 -66257.571883] SLOW spr round 3 (radius: 5) [04:35:57] [worker #2] ML tree search #19, logLikelihood: -66252.584817 [04:37:16 -66257.571618] SLOW spr round 4 (radius: 10) [04:39:17 -66252.687058] SLOW spr round 5 (radius: 5) [04:41:49 -66251.837550] SLOW spr round 6 (radius: 5) [04:44:00 -66251.837508] SLOW spr round 7 (radius: 10) [04:46:03 -66249.950479] SLOW spr round 8 (radius: 5) [04:48:31 -66249.950470] SLOW spr round 9 (radius: 10) [04:49:42] [worker #3] ML tree search #20, logLikelihood: -66254.310056 [04:50:44 -66249.950470] SLOW spr round 10 (radius: 15) [04:53:49 -66248.598560] SLOW spr round 11 (radius: 5) [04:56:29 -66248.598554] SLOW spr round 12 (radius: 10) [04:58:35] [worker #1] ML tree search #18, logLikelihood: -66258.213359 [04:58:49 -66248.598554] SLOW spr round 13 (radius: 15) [05:01:49 -66248.598554] SLOW spr round 14 (radius: 20) [05:06:34 -66248.598554] SLOW spr round 15 (radius: 25) [05:12:43 -66248.598554] Model parameter optimization (eps = 0.100000) [05:12:48] [worker #0] ML tree search #17, logLikelihood: -66248.586392 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.134929,0.245689) (0.302555,0.386106) (0.328256,1.045512) (0.234260,2.163563) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -66231.033181 AIC score: 136472.066362 / AICc score: 8180532.066362 / BIC score: 142817.462240 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=175). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 253 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VT97/3_mltree/Q5VT97.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VT97/3_mltree/Q5VT97.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VT97/3_mltree/Q5VT97.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VT97/3_mltree/Q5VT97.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5VT97/3_mltree/Q5VT97.raxml.log Analysis started: 05-Jul-2021 18:09:44 / finished: 05-Jul-2021 23:22:32 Elapsed time: 18768.503 seconds Consumed energy: 1730.412 Wh (= 9 km in an electric car, or 43 km with an e-scooter!)