RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 15-Jul-2021 06:28:49 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TYW2/2_msa/Q5TYW2_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TYW2/3_mltree/Q5TYW2 --seed 2 --threads 7 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (7 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TYW2/2_msa/Q5TYW2_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 444 sites

WARNING: Sequences tr_A0A0J9YUH2_A0A0J9YUH2_MOUSE_10090 and tr_A0A0J9YUZ3_A0A0J9YUZ3_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_D3Z1P8_D3Z1P8_MOUSE_10090 and tr_E9Q637_E9Q637_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_H2NA10_H2NA10_PONAB_9601 and sp_Q9UPS8_ANR26_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3SVD9_A0A2I3SVD9_PANTR_9598 and sp_Q92527_ANKR7_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3SVD9_A0A2I3SVD9_PANTR_9598 and tr_A0A2R8ZJB4_A0A2R8ZJB4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2QB11_H2QB11_PANTR_9598 and tr_A0A2R8ZAT3_A0A2R8ZAT3_PANPA_9597 are exactly identical!
WARNING: Sequences sp_A0A0A6YYL3_POTEB_HUMAN_9606 and sp_H3BUK9_POTB2_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q5SQ80_A20A2_HUMAN_9606 and sp_Q5VUR7_A20A3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_Q2UGY0_Q2UGY0_ASPOR_510516 and tr_A0A1S9DZ77_A0A1S9DZ77_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_A0A0E0GU17_A0A0E0GU17_ORYNI_4536 and tr_I1PFP1_I1PFP1_ORYGL_4538 are exactly identical!
WARNING: Sequences tr_A0A0E0GU17_A0A0E0GU17_ORYNI_4536 and tr_A0A0E0P1K0_A0A0E0P1K0_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_B8AK75_B8AK75_ORYSI_39946 and tr_Q9AUW0_Q9AUW0_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_A0A096MVX0_A0A096MVX0_PAPAN_9555 and tr_A0A2K5KKK9_A0A2K5KKK9_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A078I827_A0A078I827_BRANA_3708 and tr_A0A0D3E7P7_A0A0D3E7P7_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_A0A0B4GGJ3_A0A0B4GGJ3_METMF_1276143 and tr_A0A0B4IJM0_A0A0B4IJM0_METMF_1276143 are exactly identical!
WARNING: Sequences tr_A0A1S4APP5_A0A1S4APP5_TOBAC_4097 and tr_A0A1U7VUI0_A0A1U7VUI0_NICSY_4096 are exactly identical!
WARNING: Duplicate sequences found: 16

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TYW2/3_mltree/Q5TYW2.raxml.reduced.phy

Alignment comprises 1 partitions and 444 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 444 / 444
Gaps: 36.89 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TYW2/3_mltree/Q5TYW2.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 7 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 64 / 5120
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -639054.626577] Initial branch length optimization
[00:00:02 -553403.190936] Model parameter optimization (eps = 10.000000)
[00:00:29 -551829.870846] AUTODETECT spr round 1 (radius: 5)
[00:02:06 -467671.482674] AUTODETECT spr round 2 (radius: 10)
[00:03:54 -373392.493474] AUTODETECT spr round 3 (radius: 15)
[00:05:48 -333304.757505] AUTODETECT spr round 4 (radius: 20)
[00:07:54 -323230.933523] AUTODETECT spr round 5 (radius: 25)
[00:10:14 -321547.831342] SPR radius for FAST iterations: 25 (autodetect)
[00:10:14 -321547.831342] Model parameter optimization (eps = 3.000000)
[00:10:30 -321278.677138] FAST spr round 1 (radius: 25)
[00:13:23 -300527.764444] FAST spr round 2 (radius: 25)
[00:15:40 -299495.106756] FAST spr round 3 (radius: 25)
[00:17:39 -299389.268981] FAST spr round 4 (radius: 25)
[00:19:28 -299347.005449] FAST spr round 5 (radius: 25)
[00:21:09 -299339.473666] FAST spr round 6 (radius: 25)
[00:22:44 -299339.472345] Model parameter optimization (eps = 1.000000)
[00:22:53 -299335.272547] SLOW spr round 1 (radius: 5)
[00:24:51 -299267.045009] SLOW spr round 2 (radius: 5)
[00:26:47 -299247.062885] SLOW spr round 3 (radius: 5)
[00:28:40 -299235.246751] SLOW spr round 4 (radius: 5)
[00:30:30 -299235.246364] SLOW spr round 5 (radius: 10)
[00:32:33 -299223.193522] SLOW spr round 6 (radius: 5)
[00:34:39 -299220.387326] SLOW spr round 7 (radius: 5)
[00:36:34 -299220.386464] SLOW spr round 8 (radius: 10)
[00:38:41 -299219.586093] SLOW spr round 9 (radius: 5)
[00:40:45 -299218.648001] SLOW spr round 10 (radius: 5)
[00:42:40 -299218.647072] SLOW spr round 11 (radius: 10)
[00:44:46 -299213.797627] SLOW spr round 12 (radius: 5)
[00:46:52 -299207.883950] SLOW spr round 13 (radius: 5)
[00:48:48 -299207.214824] SLOW spr round 14 (radius: 5)
[00:50:39 -299207.212492] SLOW spr round 15 (radius: 10)
[00:52:44 -299205.076123] SLOW spr round 16 (radius: 5)
[00:54:50 -299202.746647] SLOW spr round 17 (radius: 5)
[00:56:46 -299202.723026] SLOW spr round 18 (radius: 10)
[00:58:53 -299199.147443] SLOW spr round 19 (radius: 5)
[01:00:57 -299198.026351] SLOW spr round 20 (radius: 5)
[01:02:53 -299198.025556] SLOW spr round 21 (radius: 10)
[01:04:58 -299198.025536] SLOW spr round 22 (radius: 15)
[01:08:16 -299192.548581] SLOW spr round 23 (radius: 5)
[01:10:28 -299181.561340] SLOW spr round 24 (radius: 5)
[01:12:26 -299181.551196] SLOW spr round 25 (radius: 10)
[01:14:37 -299174.812189] SLOW spr round 26 (radius: 5)
[01:16:42 -299160.036976] SLOW spr round 27 (radius: 5)
[01:18:38 -299159.665888] SLOW spr round 28 (radius: 5)
[01:20:30 -299159.665474] SLOW spr round 29 (radius: 10)
[01:22:34 -299157.934127] SLOW spr round 30 (radius: 5)
[01:24:38 -299157.475924] SLOW spr round 31 (radius: 5)
[01:26:35 -299157.475408] SLOW spr round 32 (radius: 10)
[01:28:41 -299157.475383] SLOW spr round 33 (radius: 15)
[01:32:00 -299155.048250] SLOW spr round 34 (radius: 5)
[01:34:12 -299143.333832] SLOW spr round 35 (radius: 5)
[01:36:13 -299141.361649] SLOW spr round 36 (radius: 5)
[01:38:06 -299141.361265] SLOW spr round 37 (radius: 10)
[01:40:09 -299134.043718] SLOW spr round 38 (radius: 5)
[01:42:12 -299134.043532] SLOW spr round 39 (radius: 10)
[01:44:28 -299133.356505] SLOW spr round 40 (radius: 5)
[01:46:31 -299132.405083] SLOW spr round 41 (radius: 5)
[01:48:26 -299132.404708] SLOW spr round 42 (radius: 10)
[01:50:31 -299132.326081] SLOW spr round 43 (radius: 15)
[01:53:46 -299131.828060] SLOW spr round 44 (radius: 5)
[01:55:58 -299126.678505] SLOW spr round 45 (radius: 5)
[01:57:56 -299126.677838] SLOW spr round 46 (radius: 10)
[02:00:04 -299126.677821] SLOW spr round 47 (radius: 15)
[02:03:16 -299126.677821] SLOW spr round 48 (radius: 20)
[02:07:23 -299126.677821] SLOW spr round 49 (radius: 25)
[02:12:22 -299125.821015] SLOW spr round 50 (radius: 5)
[02:14:35 -299122.601692] SLOW spr round 51 (radius: 5)
[02:16:35 -299122.601024] SLOW spr round 52 (radius: 10)
[02:18:45 -299122.601017] SLOW spr round 53 (radius: 15)
[02:21:56 -299122.601016] SLOW spr round 54 (radius: 20)
[02:26:03 -299122.601016] SLOW spr round 55 (radius: 25)
[02:31:02 -299122.601016] Model parameter optimization (eps = 0.100000)

[02:31:10] ML tree search #1, logLikelihood: -299122.411291

[02:31:10 -641717.327890] Initial branch length optimization
[02:31:12 -553561.364303] Model parameter optimization (eps = 10.000000)
[02:31:38 -551911.272856] AUTODETECT spr round 1 (radius: 5)
[02:33:15 -467028.683291] AUTODETECT spr round 2 (radius: 10)
[02:35:06 -372688.588661] AUTODETECT spr round 3 (radius: 15)
[02:37:03 -338758.030569] AUTODETECT spr round 4 (radius: 20)
[02:39:22 -324657.248534] AUTODETECT spr round 5 (radius: 25)
[02:41:53 -322144.461407] SPR radius for FAST iterations: 25 (autodetect)
[02:41:53 -322144.461407] Model parameter optimization (eps = 3.000000)
[02:42:01 -322138.369919] FAST spr round 1 (radius: 25)
[02:45:04 -300638.382638] FAST spr round 2 (radius: 25)
[02:47:27 -299613.623433] FAST spr round 3 (radius: 25)
[02:49:30 -299472.420089] FAST spr round 4 (radius: 25)
[02:51:24 -299431.588613] FAST spr round 5 (radius: 25)
[02:53:06 -299423.210718] FAST spr round 6 (radius: 25)
[02:54:45 -299418.372211] FAST spr round 7 (radius: 25)
[02:56:21 -299415.078549] FAST spr round 8 (radius: 25)
[02:57:56 -299415.078487] Model parameter optimization (eps = 1.000000)
[02:58:00 -299414.769889] SLOW spr round 1 (radius: 5)
[03:00:00 -299351.458989] SLOW spr round 2 (radius: 5)
[03:01:56 -299347.488424] SLOW spr round 3 (radius: 5)
[03:03:50 -299345.803967] SLOW spr round 4 (radius: 5)
[03:05:42 -299343.521795] SLOW spr round 5 (radius: 5)
[03:07:33 -299343.521547] SLOW spr round 6 (radius: 10)
[03:09:36 -299340.302850] SLOW spr round 7 (radius: 5)
[03:11:42 -299339.760474] SLOW spr round 8 (radius: 5)
[03:13:38 -299339.759822] SLOW spr round 9 (radius: 10)
[03:15:47 -299335.365194] SLOW spr round 10 (radius: 5)
[03:17:56 -299329.144000] SLOW spr round 11 (radius: 5)
[03:19:53 -299328.962277] SLOW spr round 12 (radius: 5)
[03:21:46 -299328.961466] SLOW spr round 13 (radius: 10)
[03:23:51 -299326.779872] SLOW spr round 14 (radius: 5)
[03:25:59 -299319.612136] SLOW spr round 15 (radius: 5)
[03:27:55 -299319.611634] SLOW spr round 16 (radius: 10)
[03:30:04 -299314.171207] SLOW spr round 17 (radius: 5)
[03:32:09 -299313.543281] SLOW spr round 18 (radius: 5)
[03:34:05 -299313.543109] SLOW spr round 19 (radius: 10)
[03:36:12 -299312.729698] SLOW spr round 20 (radius: 5)
[03:38:16 -299312.654940] SLOW spr round 21 (radius: 10)
[03:40:32 -299312.654516] SLOW spr round 22 (radius: 15)
[03:43:40 -299311.007596] SLOW spr round 23 (radius: 5)
[03:45:52 -299305.239244] SLOW spr round 24 (radius: 5)
[03:47:53 -299304.197608] SLOW spr round 25 (radius: 5)
[03:49:48 -299303.860384] SLOW spr round 26 (radius: 5)
[03:51:40 -299303.859817] SLOW spr round 27 (radius: 10)
[03:53:43 -299293.306763] SLOW spr round 28 (radius: 5)
[03:55:49 -299288.591888] SLOW spr round 29 (radius: 5)
[03:57:46 -299288.591368] SLOW spr round 30 (radius: 10)
[03:59:55 -299287.389478] SLOW spr round 31 (radius: 5)
[04:02:01 -299286.550854] SLOW spr round 32 (radius: 5)
[04:04:00 -299284.740457] SLOW spr round 33 (radius: 5)
[04:05:56 -299278.489139] SLOW spr round 34 (radius: 5)
[04:07:47 -299278.489072] SLOW spr round 35 (radius: 10)
[04:09:50 -299277.634342] SLOW spr round 36 (radius: 5)
[04:11:55 -299277.630852] SLOW spr round 37 (radius: 10)
[04:14:12 -299277.630852] SLOW spr round 38 (radius: 15)
[04:17:16 -299276.907769] SLOW spr round 39 (radius: 5)
[04:19:26 -299276.907676] SLOW spr round 40 (radius: 10)
[04:21:49 -299276.907672] SLOW spr round 41 (radius: 15)
[04:24:53 -299276.907671] SLOW spr round 42 (radius: 20)
[04:28:57 -299276.907671] SLOW spr round 43 (radius: 25)
[04:34:07 -299275.909822] SLOW spr round 44 (radius: 5)
[04:36:25 -299264.339759] SLOW spr round 45 (radius: 5)
[04:38:25 -299264.338462] SLOW spr round 46 (radius: 10)
[04:40:37 -299264.338411] SLOW spr round 47 (radius: 15)
[04:43:43 -299264.338407] SLOW spr round 48 (radius: 20)
[04:47:47 -299264.338406] SLOW spr round 49 (radius: 25)
[04:52:55 -299264.245735] Model parameter optimization (eps = 0.100000)

[04:53:01] ML tree search #2, logLikelihood: -299264.210611

[04:53:01 -638399.858422] Initial branch length optimization
[04:53:03 -552260.479711] Model parameter optimization (eps = 10.000000)
[04:53:24 -550773.241170] AUTODETECT spr round 1 (radius: 5)
[04:55:04 -464749.781520] AUTODETECT spr round 2 (radius: 10)
[04:56:54 -369830.741716] AUTODETECT spr round 3 (radius: 15)
[04:58:47 -334259.066098] AUTODETECT spr round 4 (radius: 20)
[05:00:54 -321653.361773] AUTODETECT spr round 5 (radius: 25)
[05:03:13 -318691.638846] SPR radius for FAST iterations: 25 (autodetect)
[05:03:13 -318691.638846] Model parameter optimization (eps = 3.000000)
[05:03:29 -318510.026918] FAST spr round 1 (radius: 25)
[05:06:26 -300185.235975] FAST spr round 2 (radius: 25)
[05:08:46 -299473.877942] FAST spr round 3 (radius: 25)
[05:10:48 -299337.389631] FAST spr round 4 (radius: 25)
[05:12:38 -299313.651691] FAST spr round 5 (radius: 25)
[05:14:19 -299309.960545] FAST spr round 6 (radius: 25)
[05:15:56 -299309.959725] Model parameter optimization (eps = 1.000000)
[05:16:06 -299305.544112] SLOW spr round 1 (radius: 5)
[05:18:07 -299199.247441] SLOW spr round 2 (radius: 5)
[05:20:04 -299190.318476] SLOW spr round 3 (radius: 5)
[05:21:59 -299180.306233] SLOW spr round 4 (radius: 5)
[05:23:50 -299179.132865] SLOW spr round 5 (radius: 5)
[05:25:41 -299179.132523] SLOW spr round 6 (radius: 10)
[05:27:48 -299153.476129] SLOW spr round 7 (radius: 5)
[05:29:58 -299138.595292] SLOW spr round 8 (radius: 5)
[05:32:00 -299128.133499] SLOW spr round 9 (radius: 5)
[05:33:54 -299127.679772] SLOW spr round 10 (radius: 5)
[05:35:45 -299127.679311] SLOW spr round 11 (radius: 10)
[05:37:50 -299125.730240] SLOW spr round 12 (radius: 5)
[05:39:55 -299124.435218] SLOW spr round 13 (radius: 5)
[05:41:53 -299121.129044] SLOW spr round 14 (radius: 5)
[05:43:46 -299121.119147] SLOW spr round 15 (radius: 10)
[05:45:53 -299121.030338] SLOW spr round 16 (radius: 15)
[05:49:21 -299114.989603] SLOW spr round 17 (radius: 5)
[05:51:33 -299112.393923] SLOW spr round 18 (radius: 5)
[05:53:32 -299112.393425] SLOW spr round 19 (radius: 10)
[05:55:46 -299110.860736] SLOW spr round 20 (radius: 5)
[05:57:51 -299106.424970] SLOW spr round 21 (radius: 5)
[05:59:50 -299098.134242] SLOW spr round 22 (radius: 5)
[06:01:43 -299098.133154] SLOW spr round 23 (radius: 10)
[06:03:49 -299097.938366] SLOW spr round 24 (radius: 5)
[06:05:54 -299097.936792] SLOW spr round 25 (radius: 10)
[06:08:12 -299097.789512] SLOW spr round 26 (radius: 5)
[06:10:19 -299094.159711] SLOW spr round 27 (radius: 5)
[06:12:17 -299093.442785] SLOW spr round 28 (radius: 5)
[06:14:10 -299093.441074] SLOW spr round 29 (radius: 10)
[06:16:16 -299093.440981] SLOW spr round 30 (radius: 15)
[06:19:46 -299093.440977] SLOW spr round 31 (radius: 20)
[06:24:17 -299090.201813] SLOW spr round 32 (radius: 5)
[06:26:32 -299081.430794] SLOW spr round 33 (radius: 5)
[06:28:36 -299076.387152] SLOW spr round 34 (radius: 5)
[06:30:32 -299075.585893] SLOW spr round 35 (radius: 5)
[06:32:24 -299075.585111] SLOW spr round 36 (radius: 10)
[06:34:31 -299074.685461] SLOW spr round 37 (radius: 5)
[06:36:36 -299074.472863] SLOW spr round 38 (radius: 5)
[06:38:34 -299074.135414] SLOW spr round 39 (radius: 5)
[06:40:28 -299073.471467] SLOW spr round 40 (radius: 5)
[06:42:20 -299073.226049] SLOW spr round 41 (radius: 5)
[06:44:11 -299073.225772] SLOW spr round 42 (radius: 10)
[06:46:16 -299073.105436] SLOW spr round 43 (radius: 5)
[06:48:22 -299072.117426] SLOW spr round 44 (radius: 5)
[06:50:19 -299072.117164] SLOW spr round 45 (radius: 10)
[06:52:29 -299072.117157] SLOW spr round 46 (radius: 15)
[06:56:00 -299072.117157] SLOW spr round 47 (radius: 20)
[07:00:39 -299072.117157] SLOW spr round 48 (radius: 25)
[07:06:21 -299072.117157] Model parameter optimization (eps = 0.100000)

[07:06:28] ML tree search #3, logLikelihood: -299071.449246

[07:06:29 -640041.763746] Initial branch length optimization
[07:06:31 -552709.318638] Model parameter optimization (eps = 10.000000)
[07:06:53 -551157.830469] AUTODETECT spr round 1 (radius: 5)
[07:08:32 -468620.277479] AUTODETECT spr round 2 (radius: 10)
[07:10:22 -378167.235976] AUTODETECT spr round 3 (radius: 15)
[07:12:15 -344782.627164] AUTODETECT spr round 4 (radius: 20)
[07:14:22 -327441.781163] AUTODETECT spr round 5 (radius: 25)
[07:16:54 -324786.223574] SPR radius for FAST iterations: 25 (autodetect)
[07:16:54 -324786.223574] Model parameter optimization (eps = 3.000000)
[07:17:09 -324561.280077] FAST spr round 1 (radius: 25)
[07:20:09 -300588.507134] FAST spr round 2 (radius: 25)
[07:22:31 -299527.227339] FAST spr round 3 (radius: 25)
[07:24:36 -299301.964882] FAST spr round 4 (radius: 25)
[07:26:26 -299249.670577] FAST spr round 5 (radius: 25)
[07:28:08 -299240.582732] FAST spr round 6 (radius: 25)
[07:29:44 -299240.581781] Model parameter optimization (eps = 1.000000)
[07:29:58 -299234.953029] SLOW spr round 1 (radius: 5)
[07:31:58 -299143.224347] SLOW spr round 2 (radius: 5)
[07:33:54 -299126.572549] SLOW spr round 3 (radius: 5)
[07:35:49 -299109.478289] SLOW spr round 4 (radius: 5)
[07:37:44 -299097.231571] SLOW spr round 5 (radius: 5)
[07:39:39 -299081.321740] SLOW spr round 6 (radius: 5)
[07:41:33 -299076.764652] SLOW spr round 7 (radius: 5)
[07:43:24 -299075.341756] SLOW spr round 8 (radius: 5)
[07:45:14 -299075.341219] SLOW spr round 9 (radius: 10)
[07:47:21 -299062.150940] SLOW spr round 10 (radius: 5)
[07:49:28 -299058.149802] SLOW spr round 11 (radius: 5)
[07:51:25 -299058.149436] SLOW spr round 12 (radius: 10)
[07:53:37 -299056.281493] SLOW spr round 13 (radius: 5)
[07:55:40 -299056.280950] SLOW spr round 14 (radius: 10)
[07:58:01 -299053.296329] SLOW spr round 15 (radius: 5)
[08:00:07 -299052.176994] SLOW spr round 16 (radius: 5)
[08:02:04 -299052.176666] SLOW spr round 17 (radius: 10)
[08:04:16 -299050.920935] SLOW spr round 18 (radius: 5)
[08:06:23 -299048.167052] SLOW spr round 19 (radius: 5)
[08:08:21 -299047.812782] SLOW spr round 20 (radius: 5)
[08:10:15 -299047.799913] SLOW spr round 21 (radius: 10)
[08:12:22 -299047.045948] SLOW spr round 22 (radius: 5)
[08:14:26 -299046.179543] SLOW spr round 23 (radius: 5)
[08:16:23 -299046.177892] SLOW spr round 24 (radius: 10)
[08:18:34 -299046.177856] SLOW spr round 25 (radius: 15)
[08:21:46 -299037.510151] SLOW spr round 26 (radius: 5)
[08:23:59 -299026.741360] SLOW spr round 27 (radius: 5)
[08:25:59 -299024.825408] SLOW spr round 28 (radius: 5)
[08:27:53 -299024.823372] SLOW spr round 29 (radius: 10)
[08:30:01 -299022.233785] SLOW spr round 30 (radius: 5)
[08:32:07 -299017.384662] SLOW spr round 31 (radius: 5)
[08:34:08 -299004.069311] SLOW spr round 32 (radius: 5)
[08:36:01 -299004.067749] SLOW spr round 33 (radius: 10)
[08:38:07 -299002.492812] SLOW spr round 34 (radius: 5)
[08:40:13 -298999.105294] SLOW spr round 35 (radius: 5)
[08:42:09 -298999.104046] SLOW spr round 36 (radius: 10)
[08:44:18 -298998.212971] SLOW spr round 37 (radius: 5)
[08:46:22 -298998.211638] SLOW spr round 38 (radius: 10)
[08:48:39 -298998.211546] SLOW spr round 39 (radius: 15)
[08:51:45 -298997.122660] SLOW spr round 40 (radius: 5)
[08:53:55 -298994.181748] SLOW spr round 41 (radius: 5)
[08:55:54 -298993.798365] SLOW spr round 42 (radius: 5)
[08:57:49 -298993.798278] SLOW spr round 43 (radius: 10)
[08:59:55 -298993.208408] SLOW spr round 44 (radius: 5)
[09:01:59 -298993.038633] SLOW spr round 45 (radius: 5)
[09:03:55 -298993.038309] SLOW spr round 46 (radius: 10)
[09:06:06 -298992.285472] SLOW spr round 47 (radius: 5)
[09:08:10 -298992.285022] SLOW spr round 48 (radius: 10)
[09:10:28 -298992.285006] SLOW spr round 49 (radius: 15)
[09:13:34 -298992.285005] SLOW spr round 50 (radius: 20)
[09:17:25 -298992.285005] SLOW spr round 51 (radius: 25)
[09:22:29 -298992.285005] Model parameter optimization (eps = 0.100000)

[09:22:36] ML tree search #4, logLikelihood: -298991.802724

[09:22:37 -641065.090297] Initial branch length optimization
[09:22:39 -553341.928684] Model parameter optimization (eps = 10.000000)
[09:23:07 -551731.085282] AUTODETECT spr round 1 (radius: 5)
[09:24:46 -465639.518479] AUTODETECT spr round 2 (radius: 10)
[09:26:37 -367291.182273] AUTODETECT spr round 3 (radius: 15)
[09:28:37 -329964.244525] AUTODETECT spr round 4 (radius: 20)
[09:30:46 -322167.719393] AUTODETECT spr round 5 (radius: 25)
[09:33:14 -321263.266664] SPR radius for FAST iterations: 25 (autodetect)
[09:33:14 -321263.266664] Model parameter optimization (eps = 3.000000)
[09:33:30 -321082.511638] FAST spr round 1 (radius: 25)
[09:36:32 -300450.028738] FAST spr round 2 (radius: 25)
[09:38:54 -299481.380071] FAST spr round 3 (radius: 25)
[09:40:56 -299384.527155] FAST spr round 4 (radius: 25)
[09:42:46 -299353.896835] FAST spr round 5 (radius: 25)
[09:44:30 -299303.396531] FAST spr round 6 (radius: 25)
[09:46:07 -299298.999850] FAST spr round 7 (radius: 25)
[09:47:42 -299298.999344] Model parameter optimization (eps = 1.000000)
[09:47:55 -299292.089931] SLOW spr round 1 (radius: 5)
[09:49:54 -299223.703837] SLOW spr round 2 (radius: 5)
[09:51:50 -299207.561225] SLOW spr round 3 (radius: 5)
[09:53:45 -299205.056797] SLOW spr round 4 (radius: 5)
[09:55:36 -299205.056510] SLOW spr round 5 (radius: 10)
[09:57:42 -299196.262478] SLOW spr round 6 (radius: 5)
[09:59:51 -299190.575092] SLOW spr round 7 (radius: 5)
[10:01:52 -299182.977489] SLOW spr round 8 (radius: 5)
[10:03:46 -299182.888997] SLOW spr round 9 (radius: 10)
[10:05:52 -299175.352342] SLOW spr round 10 (radius: 5)
[10:07:58 -299172.506159] SLOW spr round 11 (radius: 5)
[10:09:56 -299170.214984] SLOW spr round 12 (radius: 5)
[10:11:50 -299169.212380] SLOW spr round 13 (radius: 5)
[10:13:42 -299169.212319] SLOW spr round 14 (radius: 10)
[10:15:47 -299167.886521] SLOW spr round 15 (radius: 5)
[10:17:53 -299167.643418] SLOW spr round 16 (radius: 5)
[10:19:50 -299167.642281] SLOW spr round 17 (radius: 10)
[10:22:02 -299160.683107] SLOW spr round 18 (radius: 5)
[10:24:09 -299159.077579] SLOW spr round 19 (radius: 5)
[10:26:06 -299159.075953] SLOW spr round 20 (radius: 10)
[10:28:15 -299158.831907] SLOW spr round 21 (radius: 5)
[10:30:20 -299158.690026] SLOW spr round 22 (radius: 5)
[10:32:16 -299158.689455] SLOW spr round 23 (radius: 10)
[10:34:24 -299158.601559] SLOW spr round 24 (radius: 15)
[10:37:43 -299154.185131] SLOW spr round 25 (radius: 5)
[10:39:58 -299147.064673] SLOW spr round 26 (radius: 5)
[10:42:00 -299144.934292] SLOW spr round 27 (radius: 5)
[10:43:55 -299144.931882] SLOW spr round 28 (radius: 10)
[10:46:03 -299137.703179] SLOW spr round 29 (radius: 5)
[10:48:14 -299125.950805] SLOW spr round 30 (radius: 5)
[10:50:12 -299125.195362] SLOW spr round 31 (radius: 5)
[10:52:05 -299125.194591] SLOW spr round 32 (radius: 10)
[10:54:10 -299124.626043] SLOW spr round 33 (radius: 5)
[10:56:16 -299124.624388] SLOW spr round 34 (radius: 10)
[10:58:34 -299124.624231] SLOW spr round 35 (radius: 15)
[11:01:51 -299121.891688] SLOW spr round 36 (radius: 5)
[11:04:05 -299104.083928] SLOW spr round 37 (radius: 5)
[11:06:07 -299101.634483] SLOW spr round 38 (radius: 5)
[11:08:02 -299100.983317] SLOW spr round 39 (radius: 5)
[11:09:54 -299100.982951] SLOW spr round 40 (radius: 10)
[11:11:58 -299099.972976] SLOW spr round 41 (radius: 5)
[11:14:06 -299099.081034] SLOW spr round 42 (radius: 5)
[11:16:03 -299099.080318] SLOW spr round 43 (radius: 10)
[11:18:12 -299099.080293] SLOW spr round 44 (radius: 15)
[11:21:30 -299098.987568] SLOW spr round 45 (radius: 20)
[11:26:00 -299097.971577] SLOW spr round 46 (radius: 5)
[11:28:12 -299097.872522] SLOW spr round 47 (radius: 10)
[11:30:42 -299097.871760] SLOW spr round 48 (radius: 15)
[11:33:56 -299096.169893] SLOW spr round 49 (radius: 5)
[11:36:07 -299095.762370] SLOW spr round 50 (radius: 5)
[11:38:06 -299095.720356] SLOW spr round 51 (radius: 10)
[11:40:17 -299094.978535] SLOW spr round 52 (radius: 5)
[11:42:23 -299093.179759] SLOW spr round 53 (radius: 5)
[11:44:20 -299093.179121] SLOW spr round 54 (radius: 10)
[11:46:28 -299093.002058] SLOW spr round 55 (radius: 5)
[11:48:33 -299093.001518] SLOW spr round 56 (radius: 10)
[11:50:51 -299092.339651] SLOW spr round 57 (radius: 5)
[11:52:57 -299090.058998] SLOW spr round 58 (radius: 5)
[11:54:53 -299090.058942] SLOW spr round 59 (radius: 10)
[11:57:02 -299090.058940] SLOW spr round 60 (radius: 15)
[12:00:19 -299090.058940] SLOW spr round 61 (radius: 20)
[12:04:47 -299090.058940] SLOW spr round 62 (radius: 25)
[12:10:10 -299090.058940] Model parameter optimization (eps = 0.100000)

[12:10:19] ML tree search #5, logLikelihood: -299088.631428

[12:10:19 -640281.775899] Initial branch length optimization
[12:10:21 -552809.261686] Model parameter optimization (eps = 10.000000)
[12:10:51 -551286.315818] AUTODETECT spr round 1 (radius: 5)
[12:12:30 -468175.081448] AUTODETECT spr round 2 (radius: 10)
[12:14:19 -374676.756923] AUTODETECT spr round 3 (radius: 15)
[12:16:14 -338567.347477] AUTODETECT spr round 4 (radius: 20)
[12:18:18 -326208.748846] AUTODETECT spr round 5 (radius: 25)
[12:20:31 -323196.182372] SPR radius for FAST iterations: 25 (autodetect)
[12:20:31 -323196.182372] Model parameter optimization (eps = 3.000000)
[12:20:38 -323190.070689] FAST spr round 1 (radius: 25)
[12:23:37 -301614.294650] FAST spr round 2 (radius: 25)
[12:25:57 -300238.554583] FAST spr round 3 (radius: 25)
[12:28:01 -299672.779322] FAST spr round 4 (radius: 25)
[12:29:56 -299600.256136] FAST spr round 5 (radius: 25)
[12:31:46 -299572.058557] FAST spr round 6 (radius: 25)
[12:33:34 -299516.712909] FAST spr round 7 (radius: 25)
[12:35:14 -299498.300557] FAST spr round 8 (radius: 25)
[12:36:51 -299492.729458] FAST spr round 9 (radius: 25)
[12:38:26 -299491.044848] FAST spr round 10 (radius: 25)
[12:40:00 -299491.043643] Model parameter optimization (eps = 1.000000)
[12:40:04 -299490.710726] SLOW spr round 1 (radius: 5)
[12:42:06 -299418.687093] SLOW spr round 2 (radius: 5)
[12:44:03 -299386.196274] SLOW spr round 3 (radius: 5)
[12:45:59 -299379.524744] SLOW spr round 4 (radius: 5)
[12:47:51 -299379.503511] SLOW spr round 5 (radius: 10)
[12:49:56 -299373.016466] SLOW spr round 6 (radius: 5)
[12:52:06 -299362.610550] SLOW spr round 7 (radius: 5)
[12:54:03 -299362.163163] SLOW spr round 8 (radius: 5)
[12:55:57 -299362.162707] SLOW spr round 9 (radius: 10)
[12:58:04 -299354.729209] SLOW spr round 10 (radius: 5)
[13:00:12 -299332.699693] SLOW spr round 11 (radius: 5)
[13:02:13 -299325.402271] SLOW spr round 12 (radius: 5)
[13:04:07 -299324.624087] SLOW spr round 13 (radius: 5)
[13:06:00 -299324.624042] SLOW spr round 14 (radius: 10)
[13:08:04 -299321.037514] SLOW spr round 15 (radius: 5)
[13:10:09 -299319.925972] SLOW spr round 16 (radius: 5)
[13:12:07 -299319.925247] SLOW spr round 17 (radius: 10)
[13:14:14 -299317.913284] SLOW spr round 18 (radius: 5)
[13:16:22 -299314.398866] SLOW spr round 19 (radius: 5)
[13:18:22 -299310.595747] SLOW spr round 20 (radius: 5)
[13:20:16 -299306.603132] SLOW spr round 21 (radius: 5)
[13:22:08 -299306.602929] SLOW spr round 22 (radius: 10)
[13:24:12 -299304.499973] SLOW spr round 23 (radius: 5)
[13:26:19 -299301.358599] SLOW spr round 24 (radius: 5)
[13:28:16 -299301.358342] SLOW spr round 25 (radius: 10)
[13:30:24 -299300.668508] SLOW spr round 26 (radius: 5)
[13:32:29 -299300.445352] SLOW spr round 27 (radius: 5)
[13:34:26 -299300.444894] SLOW spr round 28 (radius: 10)
[13:36:33 -299300.340822] SLOW spr round 29 (radius: 5)
[13:38:39 -299297.250508] SLOW spr round 30 (radius: 5)
[13:40:36 -299297.249875] SLOW spr round 31 (radius: 10)
[13:42:43 -299294.545328] SLOW spr round 32 (radius: 5)
[13:44:50 -299290.285461] SLOW spr round 33 (radius: 5)
[13:46:49 -299289.487286] SLOW spr round 34 (radius: 5)
[13:48:42 -299289.486258] SLOW spr round 35 (radius: 10)
[13:50:46 -299288.237860] SLOW spr round 36 (radius: 5)
[13:52:55 -299283.093156] SLOW spr round 37 (radius: 5)
[13:54:52 -299283.092844] SLOW spr round 38 (radius: 10)
[13:57:01 -299278.263982] SLOW spr round 39 (radius: 5)
[13:59:09 -299273.630589] SLOW spr round 40 (radius: 5)
[14:01:06 -299273.630115] SLOW spr round 41 (radius: 10)
[14:03:14 -299273.630044] SLOW spr round 42 (radius: 15)
[14:06:25 -299271.640768] SLOW spr round 43 (radius: 5)
[14:08:37 -299270.981760] SLOW spr round 44 (radius: 5)
[14:10:37 -299270.981398] SLOW spr round 45 (radius: 10)
[14:12:48 -299270.981393] SLOW spr round 46 (radius: 15)
[14:15:57 -299270.981393] SLOW spr round 47 (radius: 20)
[14:20:06 -299270.981393] SLOW spr round 48 (radius: 25)
[14:25:12 -299263.171140] SLOW spr round 49 (radius: 5)
[14:27:25 -299263.170844] SLOW spr round 50 (radius: 10)
[14:29:55 -299263.170831] SLOW spr round 51 (radius: 15)
[14:33:03 -299263.170830] SLOW spr round 52 (radius: 20)
[14:37:13 -299262.905658] SLOW spr round 53 (radius: 5)
[14:39:25 -299262.846835] SLOW spr round 54 (radius: 10)
[14:41:55 -299262.846072] SLOW spr round 55 (radius: 15)
[14:45:02 -299262.846052] SLOW spr round 56 (radius: 20)
[14:49:13 -299262.846051] SLOW spr round 57 (radius: 25)
[14:54:21 -299262.846051] Model parameter optimization (eps = 0.100000)

[14:54:38] ML tree search #6, logLikelihood: -299085.896221

[14:54:39 -642637.822742] Initial branch length optimization
[14:54:41 -554060.347347] Model parameter optimization (eps = 10.000000)
[14:55:06 -552516.139921] AUTODETECT spr round 1 (radius: 5)
[14:56:52 -463375.840382] AUTODETECT spr round 2 (radius: 10)
[14:58:47 -372500.546059] AUTODETECT spr round 3 (radius: 15)
[15:01:01 -338699.091044] AUTODETECT spr round 4 (radius: 20)
[15:03:20 -324820.981242] AUTODETECT spr round 5 (radius: 25)
[15:06:01 -322401.474090] SPR radius for FAST iterations: 25 (autodetect)
[15:06:01 -322401.474090] Model parameter optimization (eps = 3.000000)
[15:06:08 -322397.420967] FAST spr round 1 (radius: 25)
[15:09:11 -301123.697303] FAST spr round 2 (radius: 25)
[15:11:35 -299606.905468] FAST spr round 3 (radius: 25)
[15:13:40 -299447.887404] FAST spr round 4 (radius: 25)
[15:15:30 -299422.896041] FAST spr round 5 (radius: 25)
[15:17:18 -299419.933706] FAST spr round 6 (radius: 25)
[15:19:12 -299417.410290] FAST spr round 7 (radius: 25)
[15:20:57 -299416.246120] FAST spr round 8 (radius: 25)
[15:22:37 -299416.245559] Model parameter optimization (eps = 1.000000)
[15:22:41 -299415.264229] SLOW spr round 1 (radius: 5)
[15:24:50 -299353.793831] SLOW spr round 2 (radius: 5)
[15:27:06 -299336.365052] SLOW spr round 3 (radius: 5)
[15:29:19 -299324.181325] SLOW spr round 4 (radius: 5)
[15:31:32 -299309.266457] SLOW spr round 5 (radius: 5)
[15:33:41 -299307.393598] SLOW spr round 6 (radius: 5)
[15:35:53 -299307.181858] SLOW spr round 7 (radius: 5)
[15:37:54 -299307.181485] SLOW spr round 8 (radius: 10)
[15:40:22 -299270.917155] SLOW spr round 9 (radius: 5)
[15:42:54 -299238.630126] SLOW spr round 10 (radius: 5)
[15:44:56 -299230.783218] SLOW spr round 11 (radius: 5)
[15:47:06 -299230.323430] SLOW spr round 12 (radius: 5)
[15:49:10 -299230.323183] SLOW spr round 13 (radius: 10)
[15:51:22 -299226.817430] SLOW spr round 14 (radius: 5)
[15:53:35 -299225.213255] SLOW spr round 15 (radius: 5)
[15:55:50 -299223.869845] SLOW spr round 16 (radius: 5)
[15:58:00 -299223.869741] SLOW spr round 17 (radius: 10)
[16:00:22 -299223.259847] SLOW spr round 18 (radius: 5)
[16:02:39 -299223.259312] SLOW spr round 19 (radius: 10)
[16:05:16 -299223.259280] SLOW spr round 20 (radius: 15)
[16:08:30 -299221.696625] SLOW spr round 21 (radius: 5)
[16:11:03 -299221.216632] SLOW spr round 22 (radius: 5)
[16:13:23 -299219.444511] SLOW spr round 23 (radius: 5)
[16:15:36 -299219.417919] SLOW spr round 24 (radius: 10)
[16:18:02 -299218.570537] SLOW spr round 25 (radius: 5)
[16:20:21 -299216.351481] SLOW spr round 26 (radius: 5)
[16:22:34 -299214.003522] SLOW spr round 27 (radius: 5)
[16:24:42 -299211.870401] SLOW spr round 28 (radius: 5)
[16:26:47 -299211.689428] SLOW spr round 29 (radius: 5)
[16:28:51 -299211.202893] SLOW spr round 30 (radius: 5)
[16:30:41 -299210.773866] SLOW spr round 31 (radius: 5)
[16:32:31 -299210.773746] SLOW spr round 32 (radius: 10)
[16:34:34 -299210.526896] SLOW spr round 33 (radius: 5)
[16:36:39 -299210.389998] SLOW spr round 34 (radius: 5)
[16:38:34 -299210.388847] SLOW spr round 35 (radius: 10)
[16:40:44 -299210.388780] SLOW spr round 36 (radius: 15)
[16:43:59 -299210.388776] SLOW spr round 37 (radius: 20)
[16:48:23 -299210.388776] SLOW spr round 38 (radius: 25)
[16:53:46 -299210.388776] Model parameter optimization (eps = 0.100000)

[16:54:01] ML tree search #7, logLikelihood: -299004.631166

[16:54:01 -640702.468879] Initial branch length optimization
[16:54:03 -553951.619520] Model parameter optimization (eps = 10.000000)
[16:54:26 -552260.923064] AUTODETECT spr round 1 (radius: 5)
[16:56:03 -467565.892878] AUTODETECT spr round 2 (radius: 10)
[16:57:55 -365268.981840] AUTODETECT spr round 3 (radius: 15)
[16:59:50 -334141.182800] AUTODETECT spr round 4 (radius: 20)
[17:02:10 -321150.108278] AUTODETECT spr round 5 (radius: 25)
[17:04:59 -318965.039173] SPR radius for FAST iterations: 25 (autodetect)
[17:04:59 -318965.039173] Model parameter optimization (eps = 3.000000)
[17:05:06 -318959.312036] FAST spr round 1 (radius: 25)
[17:08:14 -300875.897762] FAST spr round 2 (radius: 25)
[17:10:44 -299719.275450] FAST spr round 3 (radius: 25)
[17:12:52 -299571.105593] FAST spr round 4 (radius: 25)
[17:14:49 -299479.369956] FAST spr round 5 (radius: 25)
[17:16:37 -299446.824548] FAST spr round 6 (radius: 25)
[17:18:19 -299435.519912] FAST spr round 7 (radius: 25)
[17:19:57 -299427.224405] FAST spr round 8 (radius: 25)
[17:21:31 -299426.687186] FAST spr round 9 (radius: 25)
[17:23:05 -299425.232963] FAST spr round 10 (radius: 25)
[17:24:39 -299422.692289] FAST spr round 11 (radius: 25)
[17:26:17 -299411.103481] FAST spr round 12 (radius: 25)
[17:27:54 -299404.908301] FAST spr round 13 (radius: 25)
[17:29:27 -299402.066452] FAST spr round 14 (radius: 25)
[17:31:01 -299399.179679] FAST spr round 15 (radius: 25)
[17:32:36 -299394.714893] FAST spr round 16 (radius: 25)
[17:34:11 -299387.033355] FAST spr round 17 (radius: 25)
[17:35:46 -299383.930226] FAST spr round 18 (radius: 25)
[17:37:19 -299383.930178] Model parameter optimization (eps = 1.000000)
[17:37:24 -299383.596022] SLOW spr round 1 (radius: 5)
[17:39:27 -299313.509642] SLOW spr round 2 (radius: 5)
[17:41:26 -299298.451364] SLOW spr round 3 (radius: 5)
[17:43:21 -299296.258215] SLOW spr round 4 (radius: 5)
[17:45:15 -299294.206453] SLOW spr round 5 (radius: 5)
[17:47:07 -299294.205137] SLOW spr round 6 (radius: 10)
[17:49:14 -299279.565178] SLOW spr round 7 (radius: 5)
[17:51:25 -299266.633448] SLOW spr round 8 (radius: 5)
[17:53:25 -299265.999743] SLOW spr round 9 (radius: 5)
[17:55:20 -299265.455453] SLOW spr round 10 (radius: 5)
[17:57:13 -299265.455404] SLOW spr round 11 (radius: 10)
[17:59:19 -299264.505625] SLOW spr round 12 (radius: 5)
[18:01:25 -299264.406846] SLOW spr round 13 (radius: 10)
[18:03:45 -299264.343994] SLOW spr round 14 (radius: 15)
[18:06:59 -299262.555776] SLOW spr round 15 (radius: 5)
[18:09:10 -299262.532576] SLOW spr round 16 (radius: 10)
[18:11:37 -299262.495271] SLOW spr round 17 (radius: 15)
[18:14:49 -299262.494574] SLOW spr round 18 (radius: 20)
[18:19:12 -299262.494535] SLOW spr round 19 (radius: 25)
[18:24:39 -299262.494528] Model parameter optimization (eps = 0.100000)

[18:24:44] ML tree search #8, logLikelihood: -299262.460587

[18:24:44 -639429.297431] Initial branch length optimization
[18:24:46 -552650.963962] Model parameter optimization (eps = 10.000000)
[18:25:12 -551151.056949] AUTODETECT spr round 1 (radius: 5)
[18:26:52 -467759.678021] AUTODETECT spr round 2 (radius: 10)
[18:28:44 -369786.007044] AUTODETECT spr round 3 (radius: 15)
[18:30:41 -332730.543971] AUTODETECT spr round 4 (radius: 20)
[18:32:46 -323518.383343] AUTODETECT spr round 5 (radius: 25)
[18:35:07 -321503.730205] SPR radius for FAST iterations: 25 (autodetect)
[18:35:07 -321503.730205] Model parameter optimization (eps = 3.000000)
[18:35:13 -321499.584399] FAST spr round 1 (radius: 25)
[18:38:15 -300664.977982] FAST spr round 2 (radius: 25)
[18:40:49 -299601.046890] FAST spr round 3 (radius: 25)
[18:42:56 -299411.578424] FAST spr round 4 (radius: 25)
[18:44:48 -299386.512023] FAST spr round 5 (radius: 25)
[18:46:34 -299372.587694] FAST spr round 6 (radius: 25)
[18:48:15 -299365.552060] FAST spr round 7 (radius: 25)
[18:49:54 -299358.127955] FAST spr round 8 (radius: 25)
[18:51:34 -299355.618396] FAST spr round 9 (radius: 25)
[18:53:09 -299355.618140] Model parameter optimization (eps = 1.000000)
[18:53:13 -299354.946935] SLOW spr round 1 (radius: 5)
[18:55:18 -299282.769653] SLOW spr round 2 (radius: 5)
[18:57:16 -299272.390981] SLOW spr round 3 (radius: 5)
[18:59:12 -299267.032346] SLOW spr round 4 (radius: 5)
[19:01:04 -299267.031929] SLOW spr round 5 (radius: 10)
[19:03:12 -299240.902181] SLOW spr round 6 (radius: 5)
[19:05:22 -299232.825026] SLOW spr round 7 (radius: 5)
[19:07:21 -299232.823707] SLOW spr round 8 (radius: 10)
[19:09:32 -299231.571815] SLOW spr round 9 (radius: 5)
[19:11:39 -299231.571693] SLOW spr round 10 (radius: 10)
[19:13:56 -299230.584050] SLOW spr round 11 (radius: 5)
[19:16:04 -299229.303635] SLOW spr round 12 (radius: 5)
[19:18:03 -299229.302079] SLOW spr round 13 (radius: 10)
[19:20:12 -299228.477132] SLOW spr round 14 (radius: 5)
[19:22:22 -299225.025779] SLOW spr round 15 (radius: 5)
[19:24:22 -299224.998499] SLOW spr round 16 (radius: 10)
[19:26:31 -299224.995342] SLOW spr round 17 (radius: 15)
[19:29:45 -299224.994043] SLOW spr round 18 (radius: 20)
[19:33:58 -299224.993509] SLOW spr round 19 (radius: 25)
[19:39:00 -299224.993289] Model parameter optimization (eps = 0.100000)

[19:39:04] ML tree search #9, logLikelihood: -299224.978472

[19:39:04 -640273.783341] Initial branch length optimization
[19:39:06 -552524.040094] Model parameter optimization (eps = 10.000000)
[19:39:30 -551028.889310] AUTODETECT spr round 1 (radius: 5)
[19:41:10 -466189.129118] AUTODETECT spr round 2 (radius: 10)
[19:43:02 -375385.218874] AUTODETECT spr round 3 (radius: 15)
[19:45:01 -333660.092036] AUTODETECT spr round 4 (radius: 20)
[19:47:10 -324258.799468] AUTODETECT spr round 5 (radius: 25)
[19:49:38 -318857.578164] SPR radius for FAST iterations: 25 (autodetect)
[19:49:38 -318857.578164] Model parameter optimization (eps = 3.000000)
[19:50:00 -318630.280901] FAST spr round 1 (radius: 25)
[19:52:58 -300455.294138] FAST spr round 2 (radius: 25)
[19:55:21 -299497.875940] FAST spr round 3 (radius: 25)
[19:57:25 -299386.166414] FAST spr round 4 (radius: 25)
[19:59:18 -299340.907452] FAST spr round 5 (radius: 25)
[20:01:02 -299336.871192] FAST spr round 6 (radius: 25)
[20:02:42 -299333.561830] FAST spr round 7 (radius: 25)
[20:04:20 -299333.561542] Model parameter optimization (eps = 1.000000)
[20:04:24 -299333.489381] SLOW spr round 1 (radius: 5)
[20:06:27 -299237.040617] SLOW spr round 2 (radius: 5)
[20:08:26 -299205.701623] SLOW spr round 3 (radius: 5)
[20:10:21 -299205.700778] SLOW spr round 4 (radius: 10)
[20:12:30 -299184.002067] SLOW spr round 5 (radius: 5)
[20:14:41 -299171.916404] SLOW spr round 6 (radius: 5)
[20:16:39 -299171.915978] SLOW spr round 7 (radius: 10)
[20:18:49 -299167.760698] SLOW spr round 8 (radius: 5)
[20:20:55 -299166.464982] SLOW spr round 9 (radius: 5)
[20:22:54 -299166.464796] SLOW spr round 10 (radius: 10)
[20:25:03 -299166.034393] SLOW spr round 11 (radius: 5)
[20:27:09 -299164.020888] SLOW spr round 12 (radius: 5)
[20:29:07 -299164.020853] SLOW spr round 13 (radius: 10)
[20:31:16 -299163.722734] SLOW spr round 14 (radius: 5)
[20:33:23 -299163.093297] SLOW spr round 15 (radius: 5)
[20:35:20 -299162.709948] SLOW spr round 16 (radius: 5)
[20:37:15 -299162.709627] SLOW spr round 17 (radius: 10)
[20:39:21 -299162.297523] SLOW spr round 18 (radius: 5)
[20:41:28 -299160.837809] SLOW spr round 19 (radius: 5)
[20:43:27 -299159.678549] SLOW spr round 20 (radius: 5)
[20:45:22 -299159.629818] SLOW spr round 21 (radius: 10)
[20:47:27 -299159.540088] SLOW spr round 22 (radius: 15)
[20:50:42 -299158.965931] SLOW spr round 23 (radius: 5)
[20:52:55 -299153.904958] SLOW spr round 24 (radius: 5)
[20:54:57 -299153.574674] SLOW spr round 25 (radius: 5)
[20:56:52 -299153.574049] SLOW spr round 26 (radius: 10)
[20:58:59 -299153.574014] SLOW spr round 27 (radius: 15)
[21:02:12 -299153.574009] SLOW spr round 28 (radius: 20)
[21:06:15 -299153.574008] SLOW spr round 29 (radius: 25)
[21:11:05 -299152.136960] SLOW spr round 30 (radius: 5)
[21:13:20 -299151.462429] SLOW spr round 31 (radius: 5)
[21:15:22 -299151.461543] SLOW spr round 32 (radius: 10)
[21:17:35 -299151.461482] SLOW spr round 33 (radius: 15)
[21:20:44 -299151.461476] SLOW spr round 34 (radius: 20)
[21:24:48 -299151.461475] SLOW spr round 35 (radius: 25)
[21:29:37 -299151.461474] Model parameter optimization (eps = 0.100000)

[21:29:41] ML tree search #10, logLikelihood: -299151.429349

[21:29:41 -638982.424743] Initial branch length optimization
[21:29:43 -552163.916395] Model parameter optimization (eps = 10.000000)
[21:30:15 -550568.091408] AUTODETECT spr round 1 (radius: 5)
[21:31:55 -464968.456808] AUTODETECT spr round 2 (radius: 10)
[21:33:45 -366031.851332] AUTODETECT spr round 3 (radius: 15)
[21:35:37 -334547.508577] AUTODETECT spr round 4 (radius: 20)
[21:37:47 -322277.938074] AUTODETECT spr round 5 (radius: 25)
[21:40:12 -320941.975597] SPR radius for FAST iterations: 25 (autodetect)
[21:40:12 -320941.975597] Model parameter optimization (eps = 3.000000)
[21:40:19 -320937.132334] FAST spr round 1 (radius: 25)
[21:43:22 -301006.123670] FAST spr round 2 (radius: 25)
[21:45:50 -299881.201534] FAST spr round 3 (radius: 25)
[21:48:00 -299502.693827] FAST spr round 4 (radius: 25)
[21:49:56 -299483.230406] FAST spr round 5 (radius: 25)
[21:51:44 -299474.251202] FAST spr round 6 (radius: 25)
[21:53:23 -299473.823785] FAST spr round 7 (radius: 25)
[21:55:00 -299473.823713] Model parameter optimization (eps = 1.000000)
[21:55:05 -299473.317593] SLOW spr round 1 (radius: 5)
[21:57:09 -299373.122452] SLOW spr round 2 (radius: 5)
[21:59:08 -299354.820459] SLOW spr round 3 (radius: 5)
[22:01:08 -299348.412160] SLOW spr round 4 (radius: 5)
[22:03:07 -299336.239190] SLOW spr round 5 (radius: 5)
[22:05:01 -299333.870535] SLOW spr round 6 (radius: 5)
[22:06:54 -299333.870031] SLOW spr round 7 (radius: 10)
[22:09:00 -299330.287610] SLOW spr round 8 (radius: 5)
[22:11:11 -299318.029109] SLOW spr round 9 (radius: 5)
[22:13:11 -299318.028579] SLOW spr round 10 (radius: 10)
[22:15:22 -299316.643361] SLOW spr round 11 (radius: 5)
[22:17:29 -299316.642704] SLOW spr round 12 (radius: 10)
[22:19:48 -299315.496720] SLOW spr round 13 (radius: 5)
[22:21:54 -299314.985667] SLOW spr round 14 (radius: 5)
[22:23:52 -299314.985420] SLOW spr round 15 (radius: 10)
[22:26:03 -299313.914339] SLOW spr round 16 (radius: 5)
[22:28:09 -299312.465101] SLOW spr round 17 (radius: 5)
[22:30:08 -299312.324206] SLOW spr round 18 (radius: 5)
[22:32:03 -299312.324196] SLOW spr round 19 (radius: 10)
[22:34:10 -299311.817823] SLOW spr round 20 (radius: 5)
[22:36:18 -299311.539248] SLOW spr round 21 (radius: 5)
[22:38:16 -299311.539173] SLOW spr round 22 (radius: 10)
[22:40:27 -299310.168095] SLOW spr round 23 (radius: 5)
[22:42:34 -299310.168054] SLOW spr round 24 (radius: 10)
[22:44:53 -299310.168054] SLOW spr round 25 (radius: 15)
[22:48:04 -299307.261169] SLOW spr round 26 (radius: 5)
[22:50:18 -299300.012615] SLOW spr round 27 (radius: 5)
[22:52:18 -299300.012501] SLOW spr round 28 (radius: 10)
[22:54:31 -299295.133243] SLOW spr round 29 (radius: 5)
[22:56:37 -299295.001477] SLOW spr round 30 (radius: 5)
[22:58:36 -299295.001441] SLOW spr round 31 (radius: 10)
[23:00:46 -299295.001439] SLOW spr round 32 (radius: 15)
[23:04:00 -299295.001438] SLOW spr round 33 (radius: 20)
[23:08:16 -299293.596873] SLOW spr round 34 (radius: 5)
[23:10:30 -299293.481731] SLOW spr round 35 (radius: 5)
[23:12:32 -299293.481348] SLOW spr round 36 (radius: 10)
[23:14:46 -299293.481335] SLOW spr round 37 (radius: 15)
[23:17:58 -299293.481335] SLOW spr round 38 (radius: 20)
[23:22:14 -299293.481334] SLOW spr round 39 (radius: 25)
[23:27:44 -299280.161577] SLOW spr round 40 (radius: 5)
[23:29:59 -299278.959622] SLOW spr round 41 (radius: 5)
[23:32:03 -299278.959431] SLOW spr round 42 (radius: 10)
[23:34:18 -299278.959428] SLOW spr round 43 (radius: 15)
[23:37:29 -299278.959428] SLOW spr round 44 (radius: 20)
[23:41:46 -299278.959428] SLOW spr round 45 (radius: 25)
[23:47:15 -299278.959428] Model parameter optimization (eps = 0.100000)

[23:47:18] ML tree search #11, logLikelihood: -299278.949013

[23:47:19 -640110.171137] Initial branch length optimization
[23:47:21 -553063.608058] Model parameter optimization (eps = 10.000000)
[23:47:48 -551459.611411] AUTODETECT spr round 1 (radius: 5)
[23:49:29 -464155.958703] AUTODETECT spr round 2 (radius: 10)
[23:51:22 -379513.414359] AUTODETECT spr round 3 (radius: 15)
[23:53:23 -336022.547418] AUTODETECT spr round 4 (radius: 20)
[23:55:38 -327314.822230] AUTODETECT spr round 5 (radius: 25)
[23:58:13 -325253.211118] SPR radius for FAST iterations: 25 (autodetect)
[23:58:13 -325253.211118] Model parameter optimization (eps = 3.000000)
[23:58:20 -325242.698547] FAST spr round 1 (radius: 25)
[24:01:25 -301459.476068] FAST spr round 2 (radius: 25)
[24:03:55 -299743.437591] FAST spr round 3 (radius: 25)
[24:06:03 -299569.807229] FAST spr round 4 (radius: 25)
[24:07:58 -299529.796641] FAST spr round 5 (radius: 25)
[24:09:49 -299506.250650] FAST spr round 6 (radius: 25)
[24:11:33 -299496.420067] FAST spr round 7 (radius: 25)
[24:13:12 -299494.208926] FAST spr round 8 (radius: 25)
[24:14:48 -299494.207904] Model parameter optimization (eps = 1.000000)
[24:14:52 -299494.149865] SLOW spr round 1 (radius: 5)
[24:16:57 -299388.171410] SLOW spr round 2 (radius: 5)
[24:19:00 -299376.396297] SLOW spr round 3 (radius: 5)
[24:20:59 -299371.167556] SLOW spr round 4 (radius: 5)
[24:22:52 -299371.167190] SLOW spr round 5 (radius: 10)
[24:25:00 -299363.921898] SLOW spr round 6 (radius: 5)
[24:27:10 -299356.348153] SLOW spr round 7 (radius: 5)
[24:29:09 -299355.112787] SLOW spr round 8 (radius: 5)
[24:31:05 -299355.112623] SLOW spr round 9 (radius: 10)
[24:33:14 -299351.025624] SLOW spr round 10 (radius: 5)
[24:35:24 -299345.222819] SLOW spr round 11 (radius: 5)
[24:37:25 -299343.873359] SLOW spr round 12 (radius: 5)
[24:39:20 -299343.871890] SLOW spr round 13 (radius: 10)
[24:41:27 -299343.299645] SLOW spr round 14 (radius: 5)
[24:43:36 -299342.964876] SLOW spr round 15 (radius: 5)
[24:45:34 -299342.964479] SLOW spr round 16 (radius: 10)
[24:47:44 -299342.848500] SLOW spr round 17 (radius: 5)
[24:49:51 -299342.841813] SLOW spr round 18 (radius: 10)
[24:52:10 -299342.841521] SLOW spr round 19 (radius: 15)
[24:55:26 -299338.829762] SLOW spr round 20 (radius: 5)
[24:57:38 -299335.356165] SLOW spr round 21 (radius: 5)
[24:59:40 -299335.356103] SLOW spr round 22 (radius: 10)
[25:01:53 -299335.356102] SLOW spr round 23 (radius: 15)
[25:05:10 -299333.147631] SLOW spr round 24 (radius: 5)
[25:07:27 -299327.413349] SLOW spr round 25 (radius: 5)
[25:09:30 -299325.767999] SLOW spr round 26 (radius: 5)
[25:11:26 -299325.767502] SLOW spr round 27 (radius: 10)
[25:13:36 -299324.514453] SLOW spr round 28 (radius: 5)
[25:15:43 -299324.513943] SLOW spr round 29 (radius: 10)
[25:18:10 -299324.513933] SLOW spr round 30 (radius: 15)
[25:21:30 -299324.513932] SLOW spr round 31 (radius: 20)
[25:25:44 -299324.513932] SLOW spr round 32 (radius: 25)
[25:30:56 -299324.513932] Model parameter optimization (eps = 0.100000)

[25:31:00] ML tree search #12, logLikelihood: -299324.452754

[25:31:00 -639467.876345] Initial branch length optimization
[25:31:02 -552249.774731] Model parameter optimization (eps = 10.000000)
[25:31:34 -550685.411321] AUTODETECT spr round 1 (radius: 5)
[25:33:20 -464193.079789] AUTODETECT spr round 2 (radius: 10)
[25:35:16 -376417.730196] AUTODETECT spr round 3 (radius: 15)
[25:37:19 -336838.239893] AUTODETECT spr round 4 (radius: 20)
[25:39:36 -324041.614071] AUTODETECT spr round 5 (radius: 25)
[25:42:09 -320544.086178] SPR radius for FAST iterations: 25 (autodetect)
[25:42:09 -320544.086178] Model parameter optimization (eps = 3.000000)
[25:42:17 -320539.633992] FAST spr round 1 (radius: 25)
[25:45:24 -301997.507939] FAST spr round 2 (radius: 25)
[25:47:52 -300075.004954] FAST spr round 3 (radius: 25)
[25:50:04 -299707.039461] FAST spr round 4 (radius: 25)
[25:52:05 -299601.312760] FAST spr round 5 (radius: 25)
[25:53:57 -299569.370266] FAST spr round 6 (radius: 25)
[25:55:46 -299537.925937] FAST spr round 7 (radius: 25)
[25:57:29 -299534.845629] FAST spr round 8 (radius: 25)
[25:59:12 -299532.291714] FAST spr round 9 (radius: 25)
[26:00:54 -299532.290459] Model parameter optimization (eps = 1.000000)
[26:01:09 -299321.043260] SLOW spr round 1 (radius: 5)
[26:03:16 -299230.770694] SLOW spr round 2 (radius: 5)
[26:05:22 -299217.400513] SLOW spr round 3 (radius: 5)
[26:07:23 -299211.815846] SLOW spr round 4 (radius: 5)
[26:09:21 -299211.686662] SLOW spr round 5 (radius: 5)
[26:11:19 -299211.686643] SLOW spr round 6 (radius: 10)
[26:13:34 -299202.369880] SLOW spr round 7 (radius: 5)
[26:15:47 -299199.855861] SLOW spr round 8 (radius: 5)
[26:17:50 -299199.854910] SLOW spr round 9 (radius: 10)
[26:20:07 -299189.797413] SLOW spr round 10 (radius: 5)
[26:22:20 -299183.189832] SLOW spr round 11 (radius: 5)
[26:24:24 -299182.617862] SLOW spr round 12 (radius: 5)
[26:26:22 -299182.617564] SLOW spr round 13 (radius: 10)
[26:28:32 -299179.921660] SLOW spr round 14 (radius: 5)
[26:30:43 -299166.446601] SLOW spr round 15 (radius: 5)
[26:32:45 -299163.547773] SLOW spr round 16 (radius: 5)
[26:34:42 -299160.943958] SLOW spr round 17 (radius: 5)
[26:36:38 -299159.672518] SLOW spr round 18 (radius: 5)
[26:38:32 -299159.672513] SLOW spr round 19 (radius: 10)
[26:40:40 -299159.547598] SLOW spr round 20 (radius: 5)
[26:42:48 -299159.545478] SLOW spr round 21 (radius: 10)
[26:45:11 -299159.263915] SLOW spr round 22 (radius: 5)
[26:47:21 -299154.552980] SLOW spr round 23 (radius: 5)
[26:49:25 -299146.680165] SLOW spr round 24 (radius: 5)
[26:51:26 -299141.228425] SLOW spr round 25 (radius: 5)
[26:53:24 -299139.198151] SLOW spr round 26 (radius: 5)
[26:55:23 -299139.197352] SLOW spr round 27 (radius: 10)
[26:57:36 -299135.905614] SLOW spr round 28 (radius: 5)
[26:59:51 -299134.695482] SLOW spr round 29 (radius: 5)
[27:01:55 -299134.695288] SLOW spr round 30 (radius: 10)
[27:04:13 -299134.121071] SLOW spr round 31 (radius: 5)
[27:06:25 -299134.114785] SLOW spr round 32 (radius: 10)
[27:08:52 -299132.602799] SLOW spr round 33 (radius: 5)
[27:11:04 -299132.572167] SLOW spr round 34 (radius: 10)
[27:13:29 -299132.571700] SLOW spr round 35 (radius: 15)
[27:16:54 -299132.505745] SLOW spr round 36 (radius: 20)
[27:21:30 -299132.064168] SLOW spr round 37 (radius: 5)
[27:23:51 -299131.658938] SLOW spr round 38 (radius: 5)
[27:25:58 -299131.415751] SLOW spr round 39 (radius: 5)
[27:28:01 -299131.414079] SLOW spr round 40 (radius: 10)
[27:30:17 -299129.168499] SLOW spr round 41 (radius: 5)
[27:32:33 -299122.261978] SLOW spr round 42 (radius: 5)
[27:34:39 -299122.259462] SLOW spr round 43 (radius: 10)
[27:36:58 -299122.258482] SLOW spr round 44 (radius: 15)
[27:40:29 -299122.258092] SLOW spr round 45 (radius: 20)
[27:45:05 -299122.157684] SLOW spr round 46 (radius: 5)
[27:47:25 -299122.156156] SLOW spr round 47 (radius: 10)
[27:50:03 -299122.092140] SLOW spr round 48 (radius: 15)
[27:53:27 -299120.762583] SLOW spr round 49 (radius: 5)
[27:55:44 -299119.826520] SLOW spr round 50 (radius: 5)
[27:57:50 -299119.825845] SLOW spr round 51 (radius: 10)
[28:00:09 -299119.825827] SLOW spr round 52 (radius: 15)
[28:03:35 -299119.825826] SLOW spr round 53 (radius: 20)
[28:08:11 -299119.825825] SLOW spr round 54 (radius: 25)
[28:13:55 -299119.825825] Model parameter optimization (eps = 0.100000)

[28:14:08] ML tree search #13, logLikelihood: -299116.930076

[28:14:08 -639152.109562] Initial branch length optimization
[28:14:10 -552682.466444] Model parameter optimization (eps = 10.000000)
[28:14:38 -551169.758625] AUTODETECT spr round 1 (radius: 5)
[28:16:20 -466919.908062] AUTODETECT spr round 2 (radius: 10)
[28:18:14 -373774.484766] AUTODETECT spr round 3 (radius: 15)
[28:20:16 -331833.895805] AUTODETECT spr round 4 (radius: 20)
[28:22:33 -321430.969596] AUTODETECT spr round 5 (radius: 25)
[28:25:03 -320067.883849] SPR radius for FAST iterations: 25 (autodetect)
[28:25:03 -320067.883849] Model parameter optimization (eps = 3.000000)
[28:25:10 -320060.807461] FAST spr round 1 (radius: 25)
[28:28:18 -300587.357907] FAST spr round 2 (radius: 25)
[28:30:48 -299563.404825] FAST spr round 3 (radius: 25)
[28:32:59 -299446.064736] FAST spr round 4 (radius: 25)
[28:35:01 -299387.859296] FAST spr round 5 (radius: 25)
[28:36:54 -299376.871035] FAST spr round 6 (radius: 25)
[28:38:45 -299369.742765] FAST spr round 7 (radius: 25)
[28:40:34 -299363.276647] FAST spr round 8 (radius: 25)
[28:42:17 -299357.299458] FAST spr round 9 (radius: 25)
[28:43:58 -299357.299311] Model parameter optimization (eps = 1.000000)
[28:44:03 -299357.126703] SLOW spr round 1 (radius: 5)
[28:46:15 -299302.524317] SLOW spr round 2 (radius: 5)
[28:48:21 -299282.817258] SLOW spr round 3 (radius: 5)
[28:50:24 -299280.001393] SLOW spr round 4 (radius: 5)
[28:52:28 -299276.343780] SLOW spr round 5 (radius: 5)
[28:54:33 -299272.921203] SLOW spr round 6 (radius: 5)
[28:56:33 -299271.239872] SLOW spr round 7 (radius: 5)
[28:58:34 -299270.854084] SLOW spr round 8 (radius: 5)
[29:00:32 -299270.853584] SLOW spr round 9 (radius: 10)
[29:02:44 -299257.833153] SLOW spr round 10 (radius: 5)
[29:05:01 -299248.289599] SLOW spr round 11 (radius: 5)
[29:07:08 -299246.125237] SLOW spr round 12 (radius: 5)
[29:09:09 -299246.042376] SLOW spr round 13 (radius: 10)
[29:11:21 -299246.042366] SLOW spr round 14 (radius: 15)
[29:14:41 -299245.309810] SLOW spr round 15 (radius: 5)
[29:17:01 -299242.428031] SLOW spr round 16 (radius: 5)
[29:19:08 -299242.427721] SLOW spr round 17 (radius: 10)
[29:21:26 -299242.131940] SLOW spr round 18 (radius: 5)
[29:23:39 -299237.853794] SLOW spr round 19 (radius: 5)
[29:25:43 -299237.853137] SLOW spr round 20 (radius: 10)
[29:27:55 -299237.853124] SLOW spr round 21 (radius: 15)
[29:31:11 -299237.853124] SLOW spr round 22 (radius: 20)
[29:35:30 -299237.853124] SLOW spr round 23 (radius: 25)
[29:40:22 -299237.853124] Model parameter optimization (eps = 0.100000)

[29:40:26] ML tree search #14, logLikelihood: -299237.823959

[29:40:26 -639459.020007] Initial branch length optimization
[29:40:28 -553641.310576] Model parameter optimization (eps = 10.000000)
[29:41:04 -552046.166288] AUTODETECT spr round 1 (radius: 5)
[29:42:44 -462237.367169] AUTODETECT spr round 2 (radius: 10)
[29:44:37 -373151.780509] AUTODETECT spr round 3 (radius: 15)
[29:46:37 -341394.165792] AUTODETECT spr round 4 (radius: 20)
[29:48:54 -329402.692622] AUTODETECT spr round 5 (radius: 25)
[29:51:36 -326240.043201] SPR radius for FAST iterations: 25 (autodetect)
[29:51:36 -326240.043201] Model parameter optimization (eps = 3.000000)
[29:51:52 -326035.839181] FAST spr round 1 (radius: 25)
[29:54:55 -300842.567259] FAST spr round 2 (radius: 25)
[29:57:24 -299647.021975] FAST spr round 3 (radius: 25)
[29:59:36 -299499.700318] FAST spr round 4 (radius: 25)
[30:01:39 -299267.689415] FAST spr round 5 (radius: 25)
[30:03:33 -299246.935285] FAST spr round 6 (radius: 25)
[30:05:19 -299236.778291] FAST spr round 7 (radius: 25)
[30:07:01 -299225.905044] FAST spr round 8 (radius: 25)
[30:08:46 -299201.307192] FAST spr round 9 (radius: 25)
[30:10:28 -299197.205178] FAST spr round 10 (radius: 25)
[30:12:09 -299196.864397] FAST spr round 11 (radius: 25)
[30:13:49 -299196.863320] Model parameter optimization (eps = 1.000000)
[30:13:54 -299196.263501] SLOW spr round 1 (radius: 5)
[30:16:04 -299125.601198] SLOW spr round 2 (radius: 5)
[30:18:07 -299121.817987] SLOW spr round 3 (radius: 5)
[30:20:05 -299121.807951] SLOW spr round 4 (radius: 10)
[30:22:16 -299108.580414] SLOW spr round 5 (radius: 5)
[30:24:33 -299104.260989] SLOW spr round 6 (radius: 5)
[30:26:36 -299103.053193] SLOW spr round 7 (radius: 5)
[30:28:37 -299101.195707] SLOW spr round 8 (radius: 5)
[30:30:34 -299101.195031] SLOW spr round 9 (radius: 10)
[30:32:42 -299100.097807] SLOW spr round 10 (radius: 5)
[30:34:54 -299100.093950] SLOW spr round 11 (radius: 10)
[30:37:18 -299099.604450] SLOW spr round 12 (radius: 5)
[30:39:27 -299099.603693] SLOW spr round 13 (radius: 10)
[30:41:50 -299099.603447] SLOW spr round 14 (radius: 15)
[30:45:15 -299099.271788] SLOW spr round 15 (radius: 5)
[30:47:35 -299096.771438] SLOW spr round 16 (radius: 5)
[30:49:40 -299096.770038] SLOW spr round 17 (radius: 10)
[30:51:56 -299095.822340] SLOW spr round 18 (radius: 5)
[30:54:08 -299094.521646] SLOW spr round 19 (radius: 5)
[30:56:11 -299094.520936] SLOW spr round 20 (radius: 10)
[30:58:24 -299094.394934] SLOW spr round 21 (radius: 5)
[31:00:35 -299094.392713] SLOW spr round 22 (radius: 10)
[31:02:58 -299094.392583] SLOW spr round 23 (radius: 15)
[31:06:19 -299093.098135] SLOW spr round 24 (radius: 5)
[31:08:33 -299089.438362] SLOW spr round 25 (radius: 5)
[31:10:36 -299089.435129] SLOW spr round 26 (radius: 10)
[31:12:48 -299089.434836] SLOW spr round 27 (radius: 15)
[31:16:08 -299089.434810] SLOW spr round 28 (radius: 20)
[31:20:32 -299089.434808] SLOW spr round 29 (radius: 25)
[31:26:10 -299089.434807] Model parameter optimization (eps = 0.100000)

[31:26:14] ML tree search #15, logLikelihood: -299089.433251

[31:26:14 -637536.429136] Initial branch length optimization
[31:26:16 -550434.238697] Model parameter optimization (eps = 10.000000)
[31:26:51 -548877.533212] AUTODETECT spr round 1 (radius: 5)
[31:28:34 -462586.463404] AUTODETECT spr round 2 (radius: 10)
[31:30:31 -368929.752339] AUTODETECT spr round 3 (radius: 15)
[31:32:31 -335038.146105] AUTODETECT spr round 4 (radius: 20)
[31:34:46 -324022.004653] AUTODETECT spr round 5 (radius: 25)
[31:37:11 -319985.145080] SPR radius for FAST iterations: 25 (autodetect)
[31:37:11 -319985.145080] Model parameter optimization (eps = 3.000000)
[31:37:28 -319757.601067] FAST spr round 1 (radius: 25)
[31:40:34 -300251.023858] FAST spr round 2 (radius: 25)
[31:43:03 -299478.568811] FAST spr round 3 (radius: 25)
[31:45:11 -299361.689211] FAST spr round 4 (radius: 25)
[31:47:09 -299302.927567] FAST spr round 5 (radius: 25)
[31:48:56 -299295.552420] FAST spr round 6 (radius: 25)
[31:50:38 -299292.590353] FAST spr round 7 (radius: 25)
[31:52:20 -299292.589975] Model parameter optimization (eps = 1.000000)
[31:52:37 -299288.257525] SLOW spr round 1 (radius: 5)
[31:54:44 -299221.215435] SLOW spr round 2 (radius: 5)
[31:56:47 -299205.151621] SLOW spr round 3 (radius: 5)
[31:58:49 -299197.231743] SLOW spr round 4 (radius: 5)
[32:00:47 -299197.229943] SLOW spr round 5 (radius: 10)
[32:03:02 -299179.329761] SLOW spr round 6 (radius: 5)
[32:05:17 -299140.342837] SLOW spr round 7 (radius: 5)
[32:07:26 -299112.810925] SLOW spr round 8 (radius: 5)
[32:09:29 -299106.466266] SLOW spr round 9 (radius: 5)
[32:11:27 -299106.465922] SLOW spr round 10 (radius: 10)
[32:13:43 -299096.573245] SLOW spr round 11 (radius: 5)
[32:15:57 -299086.815995] SLOW spr round 12 (radius: 5)
[32:18:02 -299086.362436] SLOW spr round 13 (radius: 5)
[32:20:01 -299086.362228] SLOW spr round 14 (radius: 10)
[32:22:16 -299083.225334] SLOW spr round 15 (radius: 5)
[32:24:27 -299083.223227] SLOW spr round 16 (radius: 10)
[32:26:55 -299081.494014] SLOW spr round 17 (radius: 5)
[32:29:04 -299081.493206] SLOW spr round 18 (radius: 10)
[32:31:29 -299081.493195] SLOW spr round 19 (radius: 15)
[32:34:51 -299079.264881] SLOW spr round 20 (radius: 5)
[32:37:06 -299078.478063] SLOW spr round 21 (radius: 5)
[32:39:10 -299078.476949] SLOW spr round 22 (radius: 10)
[32:41:29 -299078.451259] SLOW spr round 23 (radius: 15)
[32:44:52 -299078.234235] SLOW spr round 24 (radius: 5)
[32:47:05 -299077.276387] SLOW spr round 25 (radius: 5)
[32:49:08 -299077.273596] SLOW spr round 26 (radius: 10)
[32:51:25 -299077.272727] SLOW spr round 27 (radius: 15)
[32:54:47 -299077.272484] SLOW spr round 28 (radius: 20)
[32:59:09 -299077.272421] SLOW spr round 29 (radius: 25)
[33:04:36 -299077.272405] Model parameter optimization (eps = 0.100000)

[33:04:42] ML tree search #16, logLikelihood: -299077.234277

[33:04:42 -640108.115650] Initial branch length optimization
[33:04:45 -552551.393442] Model parameter optimization (eps = 10.000000)
[33:05:31 -551019.561212] AUTODETECT spr round 1 (radius: 5)
[33:07:15 -459495.168745] AUTODETECT spr round 2 (radius: 10)
[33:09:10 -374768.871414] AUTODETECT spr round 3 (radius: 15)
[33:11:14 -336846.795102] AUTODETECT spr round 4 (radius: 20)
[33:13:34 -323793.114347] AUTODETECT spr round 5 (radius: 25)
[33:16:13 -319991.049579] SPR radius for FAST iterations: 25 (autodetect)
[33:16:13 -319991.049579] Model parameter optimization (eps = 3.000000)
[33:16:33 -319781.910664] FAST spr round 1 (radius: 25)
[33:19:32 -300666.405626] FAST spr round 2 (radius: 25)
[33:22:00 -299827.465822] FAST spr round 3 (radius: 25)
[33:24:08 -299521.300451] FAST spr round 4 (radius: 25)
[33:26:07 -299350.818961] FAST spr round 5 (radius: 25)
[33:28:00 -299231.264609] FAST spr round 6 (radius: 25)
[33:29:46 -299200.770216] FAST spr round 7 (radius: 25)
[33:31:31 -299190.320579] FAST spr round 8 (radius: 25)
[33:33:11 -299190.016481] FAST spr round 9 (radius: 25)
[33:34:51 -299190.015840] Model parameter optimization (eps = 1.000000)
[33:35:06 -299174.018796] SLOW spr round 1 (radius: 5)
[33:37:13 -299107.838485] SLOW spr round 2 (radius: 5)
[33:39:15 -299102.921294] SLOW spr round 3 (radius: 5)
[33:41:14 -299096.748472] SLOW spr round 4 (radius: 5)
[33:43:10 -299096.748292] SLOW spr round 5 (radius: 10)
[33:45:19 -299094.964270] SLOW spr round 6 (radius: 5)
[33:47:30 -299094.961311] SLOW spr round 7 (radius: 10)
[33:49:55 -299093.210710] SLOW spr round 8 (radius: 5)
[33:52:06 -299092.127885] SLOW spr round 9 (radius: 5)
[33:54:09 -299092.127079] SLOW spr round 10 (radius: 10)
[33:56:22 -299092.127060] SLOW spr round 11 (radius: 15)
[33:59:52 -299078.704528] SLOW spr round 12 (radius: 5)
[34:02:10 -299075.918994] SLOW spr round 13 (radius: 5)
[34:04:16 -299074.453746] SLOW spr round 14 (radius: 5)
[34:06:17 -299074.453672] SLOW spr round 15 (radius: 10)
[34:08:27 -299074.453662] SLOW spr round 16 (radius: 15)
[34:11:58 -299074.347803] SLOW spr round 17 (radius: 5)
[34:14:12 -299074.346999] SLOW spr round 18 (radius: 10)
[34:16:41 -299074.346968] SLOW spr round 19 (radius: 15)
[34:20:03 -299074.346966] SLOW spr round 20 (radius: 20)
[34:24:26 -299074.346965] SLOW spr round 21 (radius: 25)
[34:29:26 -299074.346965] Model parameter optimization (eps = 0.100000)

[34:29:31] ML tree search #17, logLikelihood: -299074.280189

[34:29:31 -638569.658607] Initial branch length optimization
[34:29:34 -552604.623154] Model parameter optimization (eps = 10.000000)
[34:30:03 -551010.660377] AUTODETECT spr round 1 (radius: 5)
[34:31:45 -464854.491707] AUTODETECT spr round 2 (radius: 10)
[34:33:37 -377730.778134] AUTODETECT spr round 3 (radius: 15)
[34:35:36 -329263.616573] AUTODETECT spr round 4 (radius: 20)
[34:37:47 -319888.292512] AUTODETECT spr round 5 (radius: 25)
[34:40:19 -318099.102244] SPR radius for FAST iterations: 25 (autodetect)
[34:40:19 -318099.102244] Model parameter optimization (eps = 3.000000)
[34:40:26 -318094.122902] FAST spr round 1 (radius: 25)
[34:43:27 -300524.786735] FAST spr round 2 (radius: 25)
[34:45:50 -299591.053679] FAST spr round 3 (radius: 25)
[34:47:54 -299438.140835] FAST spr round 4 (radius: 25)
[34:49:47 -299411.079725] FAST spr round 5 (radius: 25)
[34:51:33 -299402.832561] FAST spr round 6 (radius: 25)
[34:53:13 -299402.365971] FAST spr round 7 (radius: 25)
[34:54:51 -299402.364840] Model parameter optimization (eps = 1.000000)
[34:55:06 -299234.569083] SLOW spr round 1 (radius: 5)
[34:57:09 -299143.476821] SLOW spr round 2 (radius: 5)
[34:59:09 -299127.684005] SLOW spr round 3 (radius: 5)
[35:01:06 -299126.139236] SLOW spr round 4 (radius: 5)
[35:03:04 -299125.331881] SLOW spr round 5 (radius: 5)
[35:04:59 -299125.331642] SLOW spr round 6 (radius: 10)
[35:07:06 -299106.103887] SLOW spr round 7 (radius: 5)
[35:09:18 -299101.621405] SLOW spr round 8 (radius: 5)
[35:11:19 -299100.831086] SLOW spr round 9 (radius: 5)
[35:13:16 -299100.829828] SLOW spr round 10 (radius: 10)
[35:15:26 -299096.379569] SLOW spr round 11 (radius: 5)
[35:17:40 -299080.489019] SLOW spr round 12 (radius: 5)
[35:19:45 -299073.714107] SLOW spr round 13 (radius: 5)
[35:21:45 -299073.281142] SLOW spr round 14 (radius: 5)
[35:23:41 -299073.280264] SLOW spr round 15 (radius: 10)
[35:25:48 -299072.017355] SLOW spr round 16 (radius: 5)
[35:27:58 -299071.617000] SLOW spr round 17 (radius: 5)
[35:30:00 -299071.507936] SLOW spr round 18 (radius: 5)
[35:31:56 -299071.507509] SLOW spr round 19 (radius: 10)
[35:34:05 -299070.927586] SLOW spr round 20 (radius: 5)
[35:36:16 -299066.569308] SLOW spr round 21 (radius: 5)
[35:38:17 -299066.567723] SLOW spr round 22 (radius: 10)
[35:40:29 -299066.268755] SLOW spr round 23 (radius: 5)
[35:42:37 -299064.766495] SLOW spr round 24 (radius: 5)
[35:44:38 -299064.056665] SLOW spr round 25 (radius: 5)
[35:46:34 -299064.056374] SLOW spr round 26 (radius: 10)
[35:48:42 -299063.963742] SLOW spr round 27 (radius: 15)
[35:52:02 -299063.924456] SLOW spr round 28 (radius: 20)
[35:56:21 -299063.921747] SLOW spr round 29 (radius: 25)
[36:02:02 -299063.921651] Model parameter optimization (eps = 0.100000)

[36:02:09] ML tree search #18, logLikelihood: -299063.396521

[36:02:09 -640497.719563] Initial branch length optimization
[36:02:12 -553511.200731] Model parameter optimization (eps = 10.000000)
[36:02:37 -551851.665270] AUTODETECT spr round 1 (radius: 5)
[36:04:18 -461934.365957] AUTODETECT spr round 2 (radius: 10)
[36:06:08 -366584.109662] AUTODETECT spr round 3 (radius: 15)
[36:08:02 -340741.868613] AUTODETECT spr round 4 (radius: 20)
[36:10:20 -327033.115985] AUTODETECT spr round 5 (radius: 25)
[36:12:49 -322635.656596] SPR radius for FAST iterations: 25 (autodetect)
[36:12:49 -322635.656596] Model parameter optimization (eps = 3.000000)
[36:12:56 -322629.043608] FAST spr round 1 (radius: 25)
[36:15:59 -300963.805913] FAST spr round 2 (radius: 25)
[36:18:22 -299681.919120] FAST spr round 3 (radius: 25)
[36:20:23 -299582.336047] FAST spr round 4 (radius: 25)
[36:22:13 -299553.868074] FAST spr round 5 (radius: 25)
[36:23:54 -299553.864964] Model parameter optimization (eps = 1.000000)
[36:23:59 -299553.701227] SLOW spr round 1 (radius: 5)
[36:26:02 -299449.137094] SLOW spr round 2 (radius: 5)
[36:27:59 -299434.844803] SLOW spr round 3 (radius: 5)
[36:29:54 -299428.769337] SLOW spr round 4 (radius: 5)
[36:31:45 -299428.739176] SLOW spr round 5 (radius: 10)
[36:33:50 -299425.474203] SLOW spr round 6 (radius: 5)
[36:35:57 -299413.075197] SLOW spr round 7 (radius: 5)
[36:37:55 -299409.439340] SLOW spr round 8 (radius: 5)
[36:39:49 -299409.094717] SLOW spr round 9 (radius: 5)
[36:41:41 -299409.094063] SLOW spr round 10 (radius: 10)
[36:43:45 -299406.419121] SLOW spr round 11 (radius: 5)
[36:45:51 -299406.416524] SLOW spr round 12 (radius: 10)
[36:48:08 -299406.234319] SLOW spr round 13 (radius: 5)
[36:50:12 -299405.733413] SLOW spr round 14 (radius: 5)
[36:52:08 -299404.163556] SLOW spr round 15 (radius: 5)
[36:54:01 -299402.886426] SLOW spr round 16 (radius: 5)
[36:55:52 -299402.886423] SLOW spr round 17 (radius: 10)
[36:57:56 -299402.709252] SLOW spr round 18 (radius: 5)
[36:59:59 -299402.708691] SLOW spr round 19 (radius: 10)
[37:02:17 -299402.708664] SLOW spr round 20 (radius: 15)
[37:05:31 -299399.791000] SLOW spr round 21 (radius: 5)
[37:07:41 -299398.201829] SLOW spr round 22 (radius: 5)
[37:09:40 -299398.201380] SLOW spr round 23 (radius: 10)
[37:11:51 -299394.154040] SLOW spr round 24 (radius: 5)
[37:13:55 -299391.778989] SLOW spr round 25 (radius: 5)
[37:15:50 -299391.717939] SLOW spr round 26 (radius: 10)
[37:17:58 -299391.349279] SLOW spr round 27 (radius: 5)
[37:20:01 -299391.349006] SLOW spr round 28 (radius: 10)
[37:22:18 -299391.159425] SLOW spr round 29 (radius: 5)
[37:24:21 -299391.113624] SLOW spr round 30 (radius: 10)
[37:26:37 -299391.111781] SLOW spr round 31 (radius: 15)
[37:29:50 -299390.097237] SLOW spr round 32 (radius: 5)
[37:32:00 -299389.244720] SLOW spr round 33 (radius: 5)
[37:33:59 -299389.244089] SLOW spr round 34 (radius: 10)
[37:36:08 -299389.244005] SLOW spr round 35 (radius: 15)
[37:39:24 -299389.243992] SLOW spr round 36 (radius: 20)
[37:43:43 -299385.037388] SLOW spr round 37 (radius: 5)
[37:45:56 -299382.335910] SLOW spr round 38 (radius: 5)
[37:47:56 -299381.511474] SLOW spr round 39 (radius: 5)
[37:49:50 -299381.510623] SLOW spr round 40 (radius: 10)
[37:51:56 -299381.510608] SLOW spr round 41 (radius: 15)
[37:55:11 -299380.295036] SLOW spr round 42 (radius: 5)
[37:57:20 -299378.597033] SLOW spr round 43 (radius: 5)
[37:59:18 -299378.596756] SLOW spr round 44 (radius: 10)
[38:01:28 -299378.418285] SLOW spr round 45 (radius: 5)
[38:03:31 -299378.414604] SLOW spr round 46 (radius: 10)
[38:05:45 -299378.414317] SLOW spr round 47 (radius: 15)
[38:08:56 -299378.414294] SLOW spr round 48 (radius: 20)
[38:13:11 -299378.414292] SLOW spr round 49 (radius: 25)
[38:18:33 -299378.414291] Model parameter optimization (eps = 0.100000)

[38:18:36] ML tree search #19, logLikelihood: -299378.402831

[38:18:37 -637963.105396] Initial branch length optimization
[38:18:39 -552376.186274] Model parameter optimization (eps = 10.000000)
[38:19:00 -550753.197970] AUTODETECT spr round 1 (radius: 5)
[38:20:38 -462001.957789] AUTODETECT spr round 2 (radius: 10)
[38:22:28 -369832.142961] AUTODETECT spr round 3 (radius: 15)
[38:24:21 -339769.443450] AUTODETECT spr round 4 (radius: 20)
[38:26:31 -324382.515736] AUTODETECT spr round 5 (radius: 25)
[38:29:00 -322899.621154] SPR radius for FAST iterations: 25 (autodetect)
[38:29:00 -322899.621154] Model parameter optimization (eps = 3.000000)
[38:29:07 -322894.851019] FAST spr round 1 (radius: 25)
[38:32:10 -300666.802583] FAST spr round 2 (radius: 25)
[38:34:35 -299588.465827] FAST spr round 3 (radius: 25)
[38:36:42 -299448.089150] FAST spr round 4 (radius: 25)
[38:38:34 -299418.962106] FAST spr round 5 (radius: 25)
[38:40:18 -299410.282903] FAST spr round 6 (radius: 25)
[38:41:56 -299407.147259] FAST spr round 7 (radius: 25)
[38:43:32 -299406.750632] FAST spr round 8 (radius: 25)
[38:45:06 -299406.748926] Model parameter optimization (eps = 1.000000)
[38:45:11 -299406.524150] SLOW spr round 1 (radius: 5)
[38:47:13 -299324.509412] SLOW spr round 2 (radius: 5)
[38:49:11 -299309.342407] SLOW spr round 3 (radius: 5)
[38:51:05 -299306.378248] SLOW spr round 4 (radius: 5)
[38:52:56 -299306.312881] SLOW spr round 5 (radius: 10)
[38:55:00 -299297.788784] SLOW spr round 6 (radius: 5)
[38:57:08 -299291.313332] SLOW spr round 7 (radius: 5)
[38:59:05 -299290.340353] SLOW spr round 8 (radius: 5)
[39:00:58 -299290.025494] SLOW spr round 9 (radius: 5)
[39:02:49 -299289.928640] SLOW spr round 10 (radius: 10)
[39:04:54 -299287.432175] SLOW spr round 11 (radius: 5)
[39:06:58 -299287.339815] SLOW spr round 12 (radius: 10)
[39:09:16 -299286.782814] SLOW spr round 13 (radius: 5)
[39:11:19 -299286.781870] SLOW spr round 14 (radius: 10)
[39:13:35 -299286.781787] SLOW spr round 15 (radius: 15)
[39:16:51 -299284.430200] SLOW spr round 16 (radius: 5)
[39:19:01 -299283.906613] SLOW spr round 17 (radius: 5)
[39:20:59 -299283.906063] SLOW spr round 18 (radius: 10)
[39:23:10 -299283.892265] SLOW spr round 19 (radius: 15)
[39:26:28 -299283.890852] SLOW spr round 20 (radius: 20)
[39:30:45 -299282.744985] SLOW spr round 21 (radius: 5)
[39:32:57 -299280.446793] SLOW spr round 22 (radius: 5)
[39:34:59 -299278.787532] SLOW spr round 23 (radius: 5)
[39:36:54 -299278.706975] SLOW spr round 24 (radius: 10)
[39:39:01 -299278.706795] SLOW spr round 25 (radius: 15)
[39:42:23 -299278.706775] SLOW spr round 26 (radius: 20)
[39:46:41 -299278.706772] SLOW spr round 27 (radius: 25)
[39:52:04 -299278.453315] SLOW spr round 28 (radius: 5)
[39:54:18 -299278.307694] SLOW spr round 29 (radius: 5)
[39:56:18 -299278.306733] SLOW spr round 30 (radius: 10)
[39:58:32 -299278.306431] SLOW spr round 31 (radius: 15)
[40:01:50 -299278.306336] SLOW spr round 32 (radius: 20)
[40:06:10 -299278.143401] SLOW spr round 33 (radius: 5)
[40:08:23 -299274.043781] SLOW spr round 34 (radius: 5)
[40:10:23 -299274.043536] SLOW spr round 35 (radius: 10)
[40:12:35 -299274.043523] SLOW spr round 36 (radius: 15)
[40:15:55 -299273.658933] SLOW spr round 37 (radius: 5)
[40:18:05 -299270.698756] SLOW spr round 38 (radius: 5)
[40:20:05 -299267.373654] SLOW spr round 39 (radius: 5)
[40:21:59 -299267.224893] SLOW spr round 40 (radius: 5)
[40:23:51 -299267.224766] SLOW spr round 41 (radius: 10)
[40:25:55 -299267.224756] SLOW spr round 42 (radius: 15)
[40:29:20 -299267.224755] SLOW spr round 43 (radius: 20)
[40:33:41 -299267.224755] SLOW spr round 44 (radius: 25)
[40:39:06 -299267.224755] Model parameter optimization (eps = 0.100000)

[40:39:13] ML tree search #20, logLikelihood: -299267.212989


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.107405,0.481768) (0.105873,0.474557) (0.443692,0.873203) (0.343030,1.488440) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -298991.802724

AIC score: 601993.605447 / AICc score: 8646053.605447 / BIC score: 610205.733695
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=444).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TYW2/3_mltree/Q5TYW2.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TYW2/3_mltree/Q5TYW2.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TYW2/3_mltree/Q5TYW2.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TYW2/3_mltree/Q5TYW2.raxml.log

Analysis started: 15-Jul-2021 06:28:49 / finished: 16-Jul-2021 23:08:03

Elapsed time: 146353.645 seconds