RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 06-Jul-2021 14:00:48 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5TIE3/2_msa/Q5TIE3_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5TIE3/3_mltree/Q5TIE3 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5TIE3/2_msa/Q5TIE3_trimmed_msa.fasta [00:00:00] Loaded alignment with 481 taxa and 19 sites WARNING: Sequences tr_V7AZE1_V7AZE1_PHAVU_3885 and tr_A0A3Q0F1C0_A0A3Q0F1C0_VIGRR_3916 are exactly identical! WARNING: Sequences tr_R4GGP7_R4GGP7_CHICK_9031 and tr_G1N9X8_G1N9X8_MELGA_9103 are exactly identical! WARNING: Sequences tr_R4GGP7_R4GGP7_CHICK_9031 and tr_A0A226N3N3_A0A226N3N3_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q5B266_Q5B266_EMENI_227321 and tr_A0A229XLH1_A0A229XLH1_9EURO_1245748 are exactly identical! WARNING: Sequences sp_Q3UR50_VW5B2_MOUSE_10090 and tr_D4A7U5_D4A7U5_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YXE3_M3YXE3_MUSPF_9669 and tr_E2RMW2_E2RMW2_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YXE3_M3YXE3_MUSPF_9669 and tr_F6QL29_F6QL29_ORNAN_9258 are exactly identical! WARNING: Sequences tr_M3YXE3_M3YXE3_MUSPF_9669 and tr_F6Y4F9_F6Y4F9_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YXE3_M3YXE3_MUSPF_9669 and tr_W5PHR4_W5PHR4_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YXE3_M3YXE3_MUSPF_9669 and tr_I3MC71_I3MC71_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YXE3_M3YXE3_MUSPF_9669 and tr_G1L950_G1L950_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YXE3_M3YXE3_MUSPF_9669 and tr_M3WUR5_M3WUR5_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YXE3_M3YXE3_MUSPF_9669 and tr_W5M214_W5M214_LEPOC_7918 are exactly identical! WARNING: Sequences tr_M3YXE3_M3YXE3_MUSPF_9669 and tr_A0A091DMZ2_A0A091DMZ2_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3YXE3_M3YXE3_MUSPF_9669 and tr_A0A1S3GLP9_A0A1S3GLP9_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3YXE3_M3YXE3_MUSPF_9669 and tr_A0A2U3VPM1_A0A2U3VPM1_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YXE3_M3YXE3_MUSPF_9669 and tr_A0A2U3Y3E2_A0A2U3Y3E2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YXE3_M3YXE3_MUSPF_9669 and tr_A0A2Y9KBR8_A0A2Y9KBR8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YXE3_M3YXE3_MUSPF_9669 and tr_A0A384CE40_A0A384CE40_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1R2Y4_G1R2Y4_NOMLE_61853 and tr_A0A2I2YIA2_A0A2I2YIA2_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1R2Y4_G1R2Y4_NOMLE_61853 and tr_H2PC63_H2PC63_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1R2Y4_G1R2Y4_NOMLE_61853 and sp_Q8N398_VW5B2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R2Y4_G1R2Y4_NOMLE_61853 and tr_F6YE88_F6YE88_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1R2Y4_G1R2Y4_NOMLE_61853 and tr_G7NZ02_G7NZ02_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1R2Y4_G1R2Y4_NOMLE_61853 and tr_A0A096NDR9_A0A096NDR9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R2Y4_G1R2Y4_NOMLE_61853 and tr_A0A0D9RM97_A0A0D9RM97_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R2Y4_G1R2Y4_NOMLE_61853 and tr_A0A2K5NJC8_A0A2K5NJC8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1R2Y4_G1R2Y4_NOMLE_61853 and tr_A0A2K6CBA4_A0A2K6CBA4_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1R2Y4_G1R2Y4_NOMLE_61853 and tr_A0A2K5XUZ6_A0A2K5XUZ6_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1R2Y4_G1R2Y4_NOMLE_61853 and tr_A0A2R8ZUP4_A0A2R8ZUP4_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1R8W0_G1R8W0_NOMLE_61853 and tr_G3RKF1_G3RKF1_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1R8W0_G1R8W0_NOMLE_61853 and tr_H2PY83_H2PY83_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R8W0_G1R8W0_NOMLE_61853 and sp_Q5TIE3_VW5B1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R8W0_G1R8W0_NOMLE_61853 and tr_F7BY05_F7BY05_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1R8W0_G1R8W0_NOMLE_61853 and tr_G7NUU1_G7NUU1_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1R8W0_G1R8W0_NOMLE_61853 and tr_A0A096N9A4_A0A096N9A4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R8W0_G1R8W0_NOMLE_61853 and tr_A0A0D9S8C7_A0A0D9S8C7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R8W0_G1R8W0_NOMLE_61853 and tr_A0A2K5LEE3_A0A2K5LEE3_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1R8W0_G1R8W0_NOMLE_61853 and tr_A0A2K6BKW3_A0A2K6BKW3_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1R8W0_G1R8W0_NOMLE_61853 and tr_A0A2K5ZFE5_A0A2K5ZFE5_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1R8W0_G1R8W0_NOMLE_61853 and tr_A0A2R9C3G9_A0A2R9C3G9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3H9S7_G3H9S7_CRIGR_10029 and tr_D3ZP60_D3ZP60_RAT_10116 are exactly identical! WARNING: Sequences tr_J3KG90_J3KG90_COCIM_246410 and tr_E9D5C2_E9D5C2_COCPS_443226 are exactly identical! WARNING: Sequences tr_J3KG90_J3KG90_COCIM_246410 and tr_A0A0J6XWX0_A0A0J6XWX0_COCIT_404692 are exactly identical! WARNING: Sequences tr_C0NPX3_C0NPX3_AJECG_447093 and tr_C6HN15_C6HN15_AJECH_544712 are exactly identical! WARNING: Sequences tr_C0NPX3_C0NPX3_AJECG_447093 and tr_F0UPB0_F0UPB0_AJEC8_544711 are exactly identical! WARNING: Sequences tr_C0NPX3_C0NPX3_AJECG_447093 and tr_A6QUR7_A6QUR7_AJECN_339724 are exactly identical! WARNING: Sequences tr_G1TBN4_G1TBN4_RABIT_9986 and tr_A0A1L8FHQ0_A0A1L8FHQ0_XENLA_8355 are exactly identical! WARNING: Sequences tr_F7G1Y5_F7G1Y5_MONDO_13616 and tr_A0A093GGA1_A0A093GGA1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_W5QHE7_W5QHE7_SHEEP_9940 and tr_E1BD12_E1BD12_BOVIN_9913 are exactly identical! WARNING: Sequences tr_Q4W9D8_Q4W9D8_ASPFU_330879 and tr_A1CV20_A1CV20_NEOFI_331117 are exactly identical! WARNING: Sequences tr_Q4W9D8_Q4W9D8_ASPFU_330879 and tr_A0A0S7DXI6_A0A0S7DXI6_9EURO_293939 are exactly identical! WARNING: Sequences tr_M4ADB0_M4ADB0_XIPMA_8083 and tr_A0A087XNW0_A0A087XNW0_POEFO_48698 are exactly identical! WARNING: Sequences tr_I3JUX6_I3JUX6_ORENI_8128 and tr_A0A087XIM7_A0A087XIM7_POEFO_48698 are exactly identical! WARNING: Sequences tr_I3JUX6_I3JUX6_ORENI_8128 and tr_A0A2U9BJG0_A0A2U9BJG0_SCOMX_52904 are exactly identical! WARNING: Sequences tr_I3KIH2_I3KIH2_ORENI_8128 and tr_A0A2I4D4A0_A0A2I4D4A0_9TELE_52670 are exactly identical! WARNING: Sequences tr_G3TCW3_G3TCW3_LOXAF_9785 and tr_E1BB39_E1BB39_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G3TCW3_G3TCW3_LOXAF_9785 and tr_A0A2U4A097_A0A2U4A097_TURTR_9739 are exactly identical! WARNING: Sequences tr_G3TCW3_G3TCW3_LOXAF_9785 and tr_A0A2Y9LRA8_A0A2Y9LRA8_DELLE_9749 are exactly identical! WARNING: Sequences tr_G3TCW3_G3TCW3_LOXAF_9785 and tr_A0A2Y9STI5_A0A2Y9STI5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G3TCW3_G3TCW3_LOXAF_9785 and tr_A0A383ZIZ1_A0A383ZIZ1_BALAS_310752 are exactly identical! WARNING: Sequences tr_G3TEY8_G3TEY8_LOXAF_9785 and tr_M3W8D7_M3W8D7_FELCA_9685 are exactly identical! WARNING: Sequences tr_H0ZIS3_H0ZIS3_TAEGU_59729 and tr_U3K002_U3K002_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZIS3_H0ZIS3_TAEGU_59729 and tr_A0A218UWW5_A0A218UWW5_9PASE_299123 are exactly identical! WARNING: Sequences tr_H1A3C3_H1A3C3_TAEGU_59729 and tr_A0A091UY92_A0A091UY92_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1MFQ4_G1MFQ4_AILME_9646 and tr_A0A2U3WE35_A0A2U3WE35_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1MFQ4_G1MFQ4_AILME_9646 and tr_A0A2Y9JS10_A0A2Y9JS10_ENHLU_391180 are exactly identical! WARNING: Sequences tr_Q233P0_Q233P0_TETTS_312017 and tr_Q233P4_Q233P4_TETTS_312017 are exactly identical! WARNING: Sequences tr_Q233P0_Q233P0_TETTS_312017 and tr_Q233P7_Q233P7_TETTS_312017 are exactly identical! WARNING: Sequences tr_L5JV57_L5JV57_PTEAL_9402 and tr_A0A2Y9DM47_A0A2Y9DM47_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A3B1JXL1_A0A3B1JXL1_ASTMX_7994 and tr_A0A1S3MGU8_A0A1S3MGU8_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A3B1JXL1_A0A3B1JXL1_ASTMX_7994 and tr_A0A060X6N4_A0A060X6N4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_W5MHE5_W5MHE5_LEPOC_7918 and tr_W5MMN6_W5MMN6_LEPOC_7918 are exactly identical! WARNING: Sequences tr_A0A084Q9Z1_A0A084Q9Z1_STAC4_1283841 and tr_A0A084R6V5_A0A084R6V5_STACH_1283842 are exactly identical! WARNING: Sequences tr_A0A084QZV8_A0A084QZV8_STAC4_1283841 and tr_A0A084S003_A0A084S003_STACH_1283842 are exactly identical! WARNING: Sequences tr_A0A096M674_A0A096M674_POEFO_48698 and tr_A0A2I4AJR2_A0A2I4AJR2_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A096M674_A0A096M674_POEFO_48698 and tr_A0A2I4CDB2_A0A2I4CDB2_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A096M674_A0A096M674_POEFO_48698 and tr_A0A2I4CP96_A0A2I4CP96_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A0A2VCH1_A0A0A2VCH1_BEABA_1245745 and tr_A0A166VYA7_A0A166VYA7_9HYPO_1081107 are exactly identical! WARNING: Sequences tr_A0A0P7V250_A0A0P7V250_9TELE_113540 and tr_A0A0P7YF04_A0A0P7YF04_9TELE_113540 are exactly identical! WARNING: Sequences tr_A0A0K8LG40_A0A0K8LG40_9EURO_91492 and tr_A0A0S7DN69_A0A0S7DN69_9EURO_293939 are exactly identical! WARNING: Sequences tr_A0A151MJ24_A0A151MJ24_ALLMI_8496 and tr_A0A0Q3TFR4_A0A0Q3TFR4_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A151MJ24_A0A151MJ24_ALLMI_8496 and tr_A0A2I0M2W5_A0A2I0M2W5_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A151MJ24_A0A151MJ24_ALLMI_8496 and tr_A0A3Q0HA55_A0A3Q0HA55_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151PE36_A0A151PE36_ALLMI_8496 and tr_A0A3Q0G0V8_A0A3Q0G0V8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A164VHL5_A0A164VHL5_9HOMO_1314777 and tr_A0A166EX38_A0A166EX38_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A164YE10_A0A164YE10_9HOMO_1314777 and tr_A0A165Z4Q2_A0A165Z4Q2_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A165M6E9_A0A165M6E9_EXIGL_1314781 and tr_A0A165MYN4_A0A165MYN4_EXIGL_1314781 are exactly identical! WARNING: Sequences tr_A0A165QJ51_A0A165QJ51_EXIGL_1314781 and tr_A0A165R360_A0A165R360_EXIGL_1314781 are exactly identical! WARNING: Sequences tr_A0A1S3X8S7_A0A1S3X8S7_TOBAC_4097 and tr_A0A1J6I9M5_A0A1J6I9M5_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S3X8S7_A0A1S3X8S7_TOBAC_4097 and tr_A0A1U7WKX5_A0A1U7WKX5_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3R588_A0A1S3R588_SALSA_8030 and tr_A0A060YBU7_A0A060YBU7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1Y2GYN0_A0A1Y2GYN0_9FUNG_64571 and tr_A0A1Y2H0A2_A0A1Y2H0A2_9FUNG_64571 are exactly identical! WARNING: Sequences tr_A0A226NAU8_A0A226NAU8_CALSU_9009 and tr_A0A226PBI1_A0A226PBI1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2H3C0Q6_A0A2H3C0Q6_9AGAR_1076256 and tr_A0A284RC76_A0A284RC76_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A2D0QHV6_A0A2D0QHV6_ICTPU_7998 and tr_A0A2D0SC89_A0A2D0SC89_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T9P4_A0A2D0T9P4_ICTPU_7998 and tr_A0A2D0T9P8_A0A2D0T9P8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T9P4_A0A2D0T9P4_ICTPU_7998 and tr_A0A2D0T9Q5_A0A2D0T9Q5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2G2YV35_A0A2G2YV35_CAPAN_4072 and tr_A0A2G3BP24_A0A2G3BP24_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2Y9MVQ8_A0A2Y9MVQ8_DELLE_9749 and tr_A0A384B6L5_A0A384B6L5_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 100 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5TIE3/3_mltree/Q5TIE3.raxml.reduced.phy Alignment comprises 1 partitions and 19 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 19 / 19 Gaps: 1.73 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5TIE3/3_mltree/Q5TIE3.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 481 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 19 / 1520 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -17646.216610] Initial branch length optimization [00:00:00 -14609.897294] Model parameter optimization (eps = 10.000000) [00:00:04 -14515.712768] AUTODETECT spr round 1 (radius: 5) [00:00:15 -11249.151640] AUTODETECT spr round 2 (radius: 10) [00:00:28 -9494.897791] AUTODETECT spr round 3 (radius: 15) [00:00:43 -8458.306705] AUTODETECT spr round 4 (radius: 20) [00:00:59 -7765.907972] AUTODETECT spr round 5 (radius: 25) [00:01:15 -7448.101870] SPR radius for FAST iterations: 25 (autodetect) [00:01:15 -7448.101870] Model parameter optimization (eps = 3.000000) [00:01:18 -7437.168424] FAST spr round 1 (radius: 25) [00:01:30 -6677.115932] FAST spr round 2 (radius: 25) [00:01:42 -6596.269992] FAST spr round 3 (radius: 25) [00:01:53 -6577.518955] FAST spr round 4 (radius: 25) [00:02:04 -6574.116713] FAST spr round 5 (radius: 25) [00:02:14 -6573.516040] FAST spr round 6 (radius: 25) [00:02:24 -6573.127661] FAST spr round 7 (radius: 25) [00:02:35 -6571.451518] FAST spr round 8 (radius: 25) [00:02:45 -6569.832567] FAST spr round 9 (radius: 25) [00:02:55 -6569.831963] Model parameter optimization (eps = 1.000000) [00:02:58 -6568.310377] SLOW spr round 1 (radius: 5) [00:03:11 -6566.147010] SLOW spr round 2 (radius: 5) [00:03:23 -6566.145937] SLOW spr round 3 (radius: 10) [00:03:36 -6562.374771] SLOW spr round 4 (radius: 5) [00:03:51 -6560.341149] SLOW spr round 5 (radius: 5) [00:04:05 -6560.340206] SLOW spr round 6 (radius: 10) [00:04:17 -6560.339265] SLOW spr round 7 (radius: 15) [00:04:35 -6554.117412] SLOW spr round 8 (radius: 5) [00:04:52 -6544.260926] SLOW spr round 9 (radius: 5) [00:05:06 -6544.248919] SLOW spr round 10 (radius: 10) [00:05:18 -6544.248430] SLOW spr round 11 (radius: 15) [00:05:36 -6541.508665] SLOW spr round 12 (radius: 5) [00:05:52 -6541.013013] SLOW spr round 13 (radius: 5) [00:06:05 -6541.012996] SLOW spr round 14 (radius: 10) [00:06:18 -6541.012992] SLOW spr round 15 (radius: 15) [00:06:35 -6540.883542] SLOW spr round 16 (radius: 5) [00:06:51 -6540.883540] SLOW spr round 17 (radius: 10) [00:07:05 -6540.883538] SLOW spr round 18 (radius: 15) [00:07:21 -6540.883536] SLOW spr round 19 (radius: 20) [00:07:42 -6535.759897] SLOW spr round 20 (radius: 5) [00:07:58 -6531.896216] SLOW spr round 21 (radius: 5) [00:08:12 -6531.630363] SLOW spr round 22 (radius: 5) [00:08:25 -6531.630361] SLOW spr round 23 (radius: 10) [00:08:37 -6531.630360] SLOW spr round 24 (radius: 15) [00:08:55 -6531.630359] SLOW spr round 25 (radius: 20) [00:09:15 -6531.617128] SLOW spr round 26 (radius: 25) [00:09:37 -6465.751518] SLOW spr round 27 (radius: 5) [00:09:53 -6386.679143] SLOW spr round 28 (radius: 5) [00:10:07 -6384.375173] SLOW spr round 29 (radius: 5) [00:10:20 -6384.374912] SLOW spr round 30 (radius: 10) [00:10:33 -6377.965354] SLOW spr round 31 (radius: 5) [00:10:48 -6377.965288] SLOW spr round 32 (radius: 10) [00:11:01 -6377.965276] SLOW spr round 33 (radius: 15) [00:11:18 -6377.904030] SLOW spr round 34 (radius: 20) [00:11:38 -6377.904013] SLOW spr round 35 (radius: 25) [00:11:58 -6377.904010] Model parameter optimization (eps = 0.100000) [00:12:00] ML tree search #1, logLikelihood: -6377.638193 [00:12:00 -17826.519026] Initial branch length optimization [00:12:00 -14776.920625] Model parameter optimization (eps = 10.000000) [00:12:04 -14632.328249] AUTODETECT spr round 1 (radius: 5) [00:12:15 -11264.680283] AUTODETECT spr round 2 (radius: 10) [00:12:27 -9532.695537] AUTODETECT spr round 3 (radius: 15) [00:12:40 -8341.110580] AUTODETECT spr round 4 (radius: 20) [00:12:54 -7967.692646] AUTODETECT spr round 5 (radius: 25) [00:13:08 -7546.218490] SPR radius for FAST iterations: 25 (autodetect) [00:13:08 -7546.218490] Model parameter optimization (eps = 3.000000) [00:13:12 -7537.641186] FAST spr round 1 (radius: 25) [00:13:25 -6746.781284] FAST spr round 2 (radius: 25) [00:13:36 -6665.889010] FAST spr round 3 (radius: 25) [00:13:47 -6659.287730] FAST spr round 4 (radius: 25) [00:13:58 -6658.952631] FAST spr round 5 (radius: 25) [00:14:08 -6658.952286] Model parameter optimization (eps = 1.000000) [00:14:09 -6658.316673] SLOW spr round 1 (radius: 5) [00:14:23 -6654.207485] SLOW spr round 2 (radius: 5) [00:14:35 -6649.984279] SLOW spr round 3 (radius: 5) [00:14:48 -6649.696288] SLOW spr round 4 (radius: 5) [00:15:00 -6649.695276] SLOW spr round 5 (radius: 10) [00:15:12 -6644.256043] SLOW spr round 6 (radius: 5) [00:15:28 -6644.255678] SLOW spr round 7 (radius: 10) [00:15:41 -6627.752831] SLOW spr round 8 (radius: 5) [00:15:56 -6626.486774] SLOW spr round 9 (radius: 5) [00:16:10 -6626.349526] SLOW spr round 10 (radius: 5) [00:16:22 -6626.349514] SLOW spr round 11 (radius: 10) [00:16:35 -6626.349513] SLOW spr round 12 (radius: 15) [00:16:53 -6605.746861] SLOW spr round 13 (radius: 5) [00:17:09 -6591.529917] SLOW spr round 14 (radius: 5) [00:17:22 -6590.927984] SLOW spr round 15 (radius: 5) [00:17:35 -6590.927830] SLOW spr round 16 (radius: 10) [00:17:48 -6590.927829] SLOW spr round 17 (radius: 15) [00:18:05 -6588.297279] SLOW spr round 18 (radius: 5) [00:18:21 -6588.026587] SLOW spr round 19 (radius: 5) [00:18:35 -6588.026578] SLOW spr round 20 (radius: 10) [00:18:48 -6587.419136] SLOW spr round 21 (radius: 5) [00:19:04 -6586.966851] SLOW spr round 22 (radius: 5) [00:19:18 -6586.966851] SLOW spr round 23 (radius: 10) [00:19:32 -6586.966851] SLOW spr round 24 (radius: 15) [00:19:50 -6586.745027] SLOW spr round 25 (radius: 5) [00:20:07 -6586.745027] SLOW spr round 26 (radius: 10) [00:20:21 -6586.745027] SLOW spr round 27 (radius: 15) [00:20:39 -6586.745027] SLOW spr round 28 (radius: 20) [00:20:59 -6566.818423] SLOW spr round 29 (radius: 5) [00:21:16 -6514.368573] SLOW spr round 30 (radius: 5) [00:21:32 -6503.099973] SLOW spr round 31 (radius: 5) [00:21:46 -6496.316271] SLOW spr round 32 (radius: 5) [00:21:59 -6496.288981] SLOW spr round 33 (radius: 10) [00:22:13 -6481.765356] SLOW spr round 34 (radius: 5) [00:22:29 -6473.590714] SLOW spr round 35 (radius: 5) [00:22:44 -6473.570804] SLOW spr round 36 (radius: 10) [00:22:57 -6473.455249] SLOW spr round 37 (radius: 5) [00:23:13 -6473.454253] SLOW spr round 38 (radius: 10) [00:23:28 -6473.454121] SLOW spr round 39 (radius: 15) [00:23:45 -6465.686144] SLOW spr round 40 (radius: 5) [00:24:02 -6465.686136] SLOW spr round 41 (radius: 10) [00:24:16 -6465.686134] SLOW spr round 42 (radius: 15) [00:24:34 -6465.686134] SLOW spr round 43 (radius: 20) [00:24:54 -6463.502977] SLOW spr round 44 (radius: 5) [00:25:11 -6463.501506] SLOW spr round 45 (radius: 10) [00:25:26 -6463.501385] SLOW spr round 46 (radius: 15) [00:25:44 -6459.334309] SLOW spr round 47 (radius: 5) [00:26:00 -6459.334022] SLOW spr round 48 (radius: 10) [00:26:15 -6459.334014] SLOW spr round 49 (radius: 15) [00:26:33 -6459.334014] SLOW spr round 50 (radius: 20) [00:26:54 -6458.949961] SLOW spr round 51 (radius: 5) [00:27:11 -6458.888853] SLOW spr round 52 (radius: 10) [00:27:26 -6458.888822] SLOW spr round 53 (radius: 15) [00:27:44 -6458.062565] SLOW spr round 54 (radius: 5) [00:28:01 -6458.003290] SLOW spr round 55 (radius: 10) [00:28:15 -6458.002351] SLOW spr round 56 (radius: 15) [00:28:32 -6458.002290] SLOW spr round 57 (radius: 20) [00:28:51 -6456.632723] SLOW spr round 58 (radius: 5) [00:29:09 -6432.620565] SLOW spr round 59 (radius: 5) [00:29:24 -6386.009739] SLOW spr round 60 (radius: 5) [00:29:38 -6385.149055] SLOW spr round 61 (radius: 5) [00:29:51 -6385.149038] SLOW spr round 62 (radius: 10) [00:30:05 -6385.149038] SLOW spr round 63 (radius: 15) [00:30:24 -6385.149038] SLOW spr round 64 (radius: 20) [00:30:43 -6385.149038] SLOW spr round 65 (radius: 25) [00:31:03 -6374.971488] SLOW spr round 66 (radius: 5) [00:31:21 -6374.088316] SLOW spr round 67 (radius: 5) [00:31:36 -6374.087977] SLOW spr round 68 (radius: 10) [00:31:50 -6374.087957] SLOW spr round 69 (radius: 15) [00:32:08 -6373.722035] SLOW spr round 70 (radius: 5) [00:32:25 -6373.721977] SLOW spr round 71 (radius: 10) [00:32:39 -6373.721976] SLOW spr round 72 (radius: 15) [00:32:57 -6373.721975] SLOW spr round 73 (radius: 20) [00:33:17 -6373.721975] SLOW spr round 74 (radius: 25) [00:33:36 -6373.721975] Model parameter optimization (eps = 0.100000) [00:33:38] ML tree search #2, logLikelihood: -6373.434406 [00:33:38 -17789.429909] Initial branch length optimization [00:33:39 -14727.855834] Model parameter optimization (eps = 10.000000) [00:33:43 -14633.796859] AUTODETECT spr round 1 (radius: 5) [00:33:54 -11270.443919] AUTODETECT spr round 2 (radius: 10) [00:34:07 -9461.790861] AUTODETECT spr round 3 (radius: 15) [00:34:22 -8539.252408] AUTODETECT spr round 4 (radius: 20) [00:34:39 -7816.338722] AUTODETECT spr round 5 (radius: 25) [00:34:56 -7657.898131] SPR radius for FAST iterations: 25 (autodetect) [00:34:56 -7657.898131] Model parameter optimization (eps = 3.000000) [00:34:59 -7647.083121] FAST spr round 1 (radius: 25) [00:35:13 -6844.672916] FAST spr round 2 (radius: 25) [00:35:26 -6786.570500] FAST spr round 3 (radius: 25) [00:35:37 -6785.555293] FAST spr round 4 (radius: 25) [00:35:48 -6785.553770] Model parameter optimization (eps = 1.000000) [00:35:50 -6785.304426] SLOW spr round 1 (radius: 5) [00:36:04 -6783.377537] SLOW spr round 2 (radius: 5) [00:36:17 -6783.375985] SLOW spr round 3 (radius: 10) [00:36:31 -6780.620330] SLOW spr round 4 (radius: 5) [00:36:47 -6780.617245] SLOW spr round 5 (radius: 10) [00:37:03 -6765.098756] SLOW spr round 6 (radius: 5) [00:37:19 -6734.769742] SLOW spr round 7 (radius: 5) [00:37:33 -6734.760728] SLOW spr round 8 (radius: 10) [00:37:47 -6732.060704] SLOW spr round 9 (radius: 5) [00:38:04 -6732.031024] SLOW spr round 10 (radius: 10) [00:38:18 -6732.031023] SLOW spr round 11 (radius: 15) [00:38:35 -6728.043718] SLOW spr round 12 (radius: 5) [00:38:52 -6725.988953] SLOW spr round 13 (radius: 5) [00:39:07 -6725.988666] SLOW spr round 14 (radius: 10) [00:39:21 -6725.464642] SLOW spr round 15 (radius: 5) [00:39:37 -6725.463881] SLOW spr round 16 (radius: 10) [00:39:51 -6725.463797] SLOW spr round 17 (radius: 15) [00:40:08 -6725.463787] SLOW spr round 18 (radius: 20) [00:40:27 -6719.936268] SLOW spr round 19 (radius: 5) [00:40:44 -6716.480084] SLOW spr round 20 (radius: 5) [00:40:59 -6716.478813] SLOW spr round 21 (radius: 10) [00:41:13 -6716.478749] SLOW spr round 22 (radius: 15) [00:41:30 -6716.478746] SLOW spr round 23 (radius: 20) [00:41:49 -6716.478746] SLOW spr round 24 (radius: 25) [00:42:09 -6711.454007] SLOW spr round 25 (radius: 5) [00:42:26 -6710.575058] SLOW spr round 26 (radius: 5) [00:42:41 -6710.575046] SLOW spr round 27 (radius: 10) [00:42:55 -6710.575046] SLOW spr round 28 (radius: 15) [00:43:12 -6710.005191] SLOW spr round 29 (radius: 5) [00:43:28 -6710.005001] SLOW spr round 30 (radius: 10) [00:43:43 -6710.004991] SLOW spr round 31 (radius: 15) [00:43:59 -6710.004991] SLOW spr round 32 (radius: 20) [00:44:19 -6710.004991] SLOW spr round 33 (radius: 25) [00:44:38 -6710.004991] Model parameter optimization (eps = 0.100000) [00:44:40] ML tree search #3, logLikelihood: -6709.532150 [00:44:40 -17787.880213] Initial branch length optimization [00:44:40 -14681.816699] Model parameter optimization (eps = 10.000000) [00:44:45 -14580.579522] AUTODETECT spr round 1 (radius: 5) [00:44:56 -11554.775718] AUTODETECT spr round 2 (radius: 10) [00:45:08 -9802.366560] AUTODETECT spr round 3 (radius: 15) [00:45:22 -8639.614356] AUTODETECT spr round 4 (radius: 20) [00:45:37 -7865.857068] AUTODETECT spr round 5 (radius: 25) [00:45:53 -7353.294235] SPR radius for FAST iterations: 25 (autodetect) [00:45:53 -7353.294235] Model parameter optimization (eps = 3.000000) [00:45:57 -7338.267447] FAST spr round 1 (radius: 25) [00:46:10 -6631.334052] FAST spr round 2 (radius: 25) [00:46:22 -6556.258941] FAST spr round 3 (radius: 25) [00:46:34 -6529.024136] FAST spr round 4 (radius: 25) [00:46:45 -6516.175401] FAST spr round 5 (radius: 25) [00:46:56 -6506.673463] FAST spr round 6 (radius: 25) [00:47:07 -6506.672559] Model parameter optimization (eps = 1.000000) [00:47:09 -6505.350067] SLOW spr round 1 (radius: 5) [00:47:23 -6498.136149] SLOW spr round 2 (radius: 5) [00:47:37 -6497.929135] SLOW spr round 3 (radius: 5) [00:47:51 -6497.928832] SLOW spr round 4 (radius: 10) [00:48:04 -6483.467322] SLOW spr round 5 (radius: 5) [00:48:20 -6480.956473] SLOW spr round 6 (radius: 5) [00:48:34 -6479.965300] SLOW spr round 7 (radius: 5) [00:48:47 -6479.965281] SLOW spr round 8 (radius: 10) [00:48:59 -6479.444443] SLOW spr round 9 (radius: 5) [00:49:15 -6479.444442] SLOW spr round 10 (radius: 10) [00:49:29 -6458.047910] SLOW spr round 11 (radius: 5) [00:49:44 -6457.482820] SLOW spr round 12 (radius: 5) [00:49:58 -6457.481852] SLOW spr round 13 (radius: 10) [00:50:10 -6455.556870] SLOW spr round 14 (radius: 5) [00:50:27 -6455.556623] SLOW spr round 15 (radius: 10) [00:50:42 -6454.084834] SLOW spr round 16 (radius: 5) [00:50:59 -6446.784699] SLOW spr round 17 (radius: 5) [00:51:13 -6446.403826] SLOW spr round 18 (radius: 5) [00:51:26 -6446.402382] SLOW spr round 19 (radius: 10) [00:51:39 -6446.286545] SLOW spr round 20 (radius: 5) [00:51:55 -6445.949811] SLOW spr round 21 (radius: 5) [00:52:08 -6445.949493] SLOW spr round 22 (radius: 10) [00:52:21 -6442.019289] SLOW spr round 23 (radius: 5) [00:52:36 -6442.018056] SLOW spr round 24 (radius: 10) [00:52:50 -6442.018012] SLOW spr round 25 (radius: 15) [00:53:07 -6401.730677] SLOW spr round 26 (radius: 5) [00:53:24 -6384.469169] SLOW spr round 27 (radius: 5) [00:53:39 -6384.457861] SLOW spr round 28 (radius: 10) [00:53:53 -6384.456698] SLOW spr round 29 (radius: 15) [00:54:11 -6384.455529] SLOW spr round 30 (radius: 20) [00:54:32 -6374.739193] SLOW spr round 31 (radius: 5) [00:54:48 -6374.630965] SLOW spr round 32 (radius: 5) [00:55:03 -6374.629892] SLOW spr round 33 (radius: 10) [00:55:16 -6374.629861] SLOW spr round 34 (radius: 15) [00:55:33 -6374.629859] SLOW spr round 35 (radius: 20) [00:55:53 -6374.629859] SLOW spr round 36 (radius: 25) [00:56:12 -6369.314802] SLOW spr round 37 (radius: 5) [00:56:29 -6369.314673] SLOW spr round 38 (radius: 10) [00:56:44 -6368.812219] SLOW spr round 39 (radius: 5) [00:57:00 -6368.812203] SLOW spr round 40 (radius: 10) [00:57:14 -6368.812202] SLOW spr round 41 (radius: 15) [00:57:31 -6368.812201] SLOW spr round 42 (radius: 20) [00:57:51 -6368.812201] SLOW spr round 43 (radius: 25) [00:58:11 -6368.699815] SLOW spr round 44 (radius: 5) [00:58:27 -6368.699755] SLOW spr round 45 (radius: 10) [00:58:41 -6368.699754] SLOW spr round 46 (radius: 15) [00:58:57 -6368.699754] SLOW spr round 47 (radius: 20) [00:59:16 -6368.699754] SLOW spr round 48 (radius: 25) [00:59:34 -6368.699754] Model parameter optimization (eps = 0.100000) [00:59:36] ML tree search #4, logLikelihood: -6368.314168 [00:59:36 -17575.963619] Initial branch length optimization [00:59:36 -14609.702726] Model parameter optimization (eps = 10.000000) [00:59:40 -14486.635465] AUTODETECT spr round 1 (radius: 5) [00:59:50 -11544.915306] AUTODETECT spr round 2 (radius: 10) [01:00:02 -9694.303537] AUTODETECT spr round 3 (radius: 15) [01:00:15 -8793.241027] AUTODETECT spr round 4 (radius: 20) [01:00:29 -7989.890198] AUTODETECT spr round 5 (radius: 25) [01:00:43 -7669.993430] SPR radius for FAST iterations: 25 (autodetect) [01:00:43 -7669.993430] Model parameter optimization (eps = 3.000000) [01:00:47 -7659.076333] FAST spr round 1 (radius: 25) [01:00:59 -6934.519033] FAST spr round 2 (radius: 25) [01:01:10 -6859.993331] FAST spr round 3 (radius: 25) [01:01:21 -6833.557581] FAST spr round 4 (radius: 25) [01:01:31 -6833.413456] FAST spr round 5 (radius: 25) [01:01:41 -6833.411809] Model parameter optimization (eps = 1.000000) [01:01:43 -6832.207065] SLOW spr round 1 (radius: 5) [01:01:57 -6828.216783] SLOW spr round 2 (radius: 5) [01:02:09 -6827.646732] SLOW spr round 3 (radius: 5) [01:02:22 -6827.646713] SLOW spr round 4 (radius: 10) [01:02:35 -6827.282788] SLOW spr round 5 (radius: 5) [01:02:51 -6823.871948] SLOW spr round 6 (radius: 5) [01:03:06 -6823.867051] SLOW spr round 7 (radius: 10) [01:03:18 -6823.865493] SLOW spr round 8 (radius: 15) [01:03:36 -6810.580229] SLOW spr round 9 (radius: 5) [01:03:52 -6783.745745] SLOW spr round 10 (radius: 5) [01:04:06 -6783.151895] SLOW spr round 11 (radius: 5) [01:04:18 -6783.151204] SLOW spr round 12 (radius: 10) [01:04:30 -6782.912198] SLOW spr round 13 (radius: 5) [01:04:45 -6782.912178] SLOW spr round 14 (radius: 10) [01:04:58 -6782.912176] SLOW spr round 15 (radius: 15) [01:05:15 -6781.777058] SLOW spr round 16 (radius: 5) [01:05:30 -6781.777036] SLOW spr round 17 (radius: 10) [01:05:44 -6781.777035] SLOW spr round 18 (radius: 15) [01:06:02 -6780.673743] SLOW spr round 19 (radius: 5) [01:06:18 -6775.682213] SLOW spr round 20 (radius: 5) [01:06:32 -6775.682207] SLOW spr round 21 (radius: 10) [01:06:44 -6775.682207] SLOW spr round 22 (radius: 15) [01:07:01 -6775.682207] SLOW spr round 23 (radius: 20) [01:07:20 -6763.798086] SLOW spr round 24 (radius: 5) [01:07:35 -6763.798069] SLOW spr round 25 (radius: 10) [01:07:48 -6762.751726] SLOW spr round 26 (radius: 5) [01:08:03 -6762.751726] SLOW spr round 27 (radius: 10) [01:08:15 -6762.751726] SLOW spr round 28 (radius: 15) [01:08:32 -6759.710943] SLOW spr round 29 (radius: 5) [01:08:47 -6759.710943] SLOW spr round 30 (radius: 10) [01:09:00 -6759.710943] SLOW spr round 31 (radius: 15) [01:09:16 -6759.710943] SLOW spr round 32 (radius: 20) [01:09:34 -6759.710943] SLOW spr round 33 (radius: 25) [01:09:52 -6758.148461] SLOW spr round 34 (radius: 5) [01:10:08 -6724.795362] SLOW spr round 35 (radius: 5) [01:10:22 -6724.793590] SLOW spr round 36 (radius: 10) [01:10:34 -6722.234047] SLOW spr round 37 (radius: 5) [01:10:49 -6719.463250] SLOW spr round 38 (radius: 5) [01:11:02 -6719.463192] SLOW spr round 39 (radius: 10) [01:11:14 -6719.463183] SLOW spr round 40 (radius: 15) [01:11:31 -6719.463180] SLOW spr round 41 (radius: 20) [01:11:49 -6719.463179] SLOW spr round 42 (radius: 25) [01:12:08 -6712.428609] SLOW spr round 43 (radius: 5) [01:12:24 -6704.319634] SLOW spr round 44 (radius: 5) [01:12:37 -6702.518321] SLOW spr round 45 (radius: 5) [01:12:50 -6702.396351] SLOW spr round 46 (radius: 5) [01:13:02 -6702.395379] SLOW spr round 47 (radius: 10) [01:13:14 -6702.394472] SLOW spr round 48 (radius: 15) [01:13:31 -6702.393566] SLOW spr round 49 (radius: 20) [01:13:48 -6702.393060] SLOW spr round 50 (radius: 25) [01:14:07 -6699.806366] SLOW spr round 51 (radius: 5) [01:14:24 -6699.805342] SLOW spr round 52 (radius: 10) [01:14:39 -6696.820503] SLOW spr round 53 (radius: 5) [01:14:54 -6696.810320] SLOW spr round 54 (radius: 10) [01:15:07 -6696.810029] SLOW spr round 55 (radius: 15) [01:15:23 -6696.809976] SLOW spr round 56 (radius: 20) [01:15:41 -6696.809962] SLOW spr round 57 (radius: 25) [01:15:59 -6681.870108] SLOW spr round 58 (radius: 5) [01:16:15 -6659.486179] SLOW spr round 59 (radius: 5) [01:16:28 -6659.486175] SLOW spr round 60 (radius: 10) [01:16:41 -6659.486175] SLOW spr round 61 (radius: 15) [01:16:58 -6659.486175] SLOW spr round 62 (radius: 20) [01:17:15 -6659.486175] SLOW spr round 63 (radius: 25) [01:17:33 -6659.486175] Model parameter optimization (eps = 0.100000) [01:17:36] ML tree search #5, logLikelihood: -6659.242478 [01:17:36 -17611.327764] Initial branch length optimization [01:17:36 -14660.154458] Model parameter optimization (eps = 10.000000) [01:17:42 -14506.431491] AUTODETECT spr round 1 (radius: 5) [01:17:53 -11318.905177] AUTODETECT spr round 2 (radius: 10) [01:18:05 -9617.498233] AUTODETECT spr round 3 (radius: 15) [01:18:18 -8487.678001] AUTODETECT spr round 4 (radius: 20) [01:18:34 -8078.067452] AUTODETECT spr round 5 (radius: 25) [01:18:49 -7833.570880] SPR radius for FAST iterations: 25 (autodetect) [01:18:49 -7833.570880] Model parameter optimization (eps = 3.000000) [01:18:53 -7827.033798] FAST spr round 1 (radius: 25) [01:19:06 -6967.884306] FAST spr round 2 (radius: 25) [01:19:17 -6833.930080] FAST spr round 3 (radius: 25) [01:19:28 -6806.953117] FAST spr round 4 (radius: 25) [01:19:39 -6796.302753] FAST spr round 5 (radius: 25) [01:19:49 -6796.265840] Model parameter optimization (eps = 1.000000) [01:19:50 -6795.993186] SLOW spr round 1 (radius: 5) [01:20:03 -6792.817701] SLOW spr round 2 (radius: 5) [01:20:16 -6790.792650] SLOW spr round 3 (radius: 5) [01:20:29 -6790.792632] SLOW spr round 4 (radius: 10) [01:20:42 -6790.078285] SLOW spr round 5 (radius: 5) [01:20:57 -6790.077191] SLOW spr round 6 (radius: 10) [01:21:11 -6785.931937] SLOW spr round 7 (radius: 5) [01:21:27 -6785.931340] SLOW spr round 8 (radius: 10) [01:21:40 -6785.931340] SLOW spr round 9 (radius: 15) [01:21:58 -6770.534402] SLOW spr round 10 (radius: 5) [01:22:15 -6763.032660] SLOW spr round 11 (radius: 5) [01:22:29 -6762.903320] SLOW spr round 12 (radius: 5) [01:22:42 -6762.902817] SLOW spr round 13 (radius: 10) [01:22:55 -6761.131272] SLOW spr round 14 (radius: 5) [01:23:11 -6761.129583] SLOW spr round 15 (radius: 10) [01:23:24 -6761.129581] SLOW spr round 16 (radius: 15) [01:23:42 -6761.129581] SLOW spr round 17 (radius: 20) [01:24:03 -6754.815254] SLOW spr round 18 (radius: 5) [01:24:20 -6751.954459] SLOW spr round 19 (radius: 5) [01:24:35 -6751.323912] SLOW spr round 20 (radius: 5) [01:24:49 -6751.322954] SLOW spr round 21 (radius: 10) [01:25:02 -6751.322877] SLOW spr round 22 (radius: 15) [01:25:21 -6751.322871] SLOW spr round 23 (radius: 20) [01:25:42 -6751.322870] SLOW spr round 24 (radius: 25) [01:26:02 -6724.999461] SLOW spr round 25 (radius: 5) [01:26:20 -6699.778734] SLOW spr round 26 (radius: 5) [01:26:36 -6633.820499] SLOW spr round 27 (radius: 5) [01:26:50 -6610.311376] SLOW spr round 28 (radius: 5) [01:27:04 -6595.767674] SLOW spr round 29 (radius: 5) [01:27:17 -6587.638435] SLOW spr round 30 (radius: 5) [01:27:30 -6574.620169] SLOW spr round 31 (radius: 5) [01:27:43 -6563.747295] SLOW spr round 32 (radius: 5) [01:27:56 -6563.747291] SLOW spr round 33 (radius: 10) [01:28:09 -6554.071476] SLOW spr round 34 (radius: 5) [01:28:26 -6554.071476] SLOW spr round 35 (radius: 10) [01:28:40 -6550.438675] SLOW spr round 36 (radius: 5) [01:28:55 -6550.438659] SLOW spr round 37 (radius: 10) [01:29:09 -6550.438659] SLOW spr round 38 (radius: 15) [01:29:27 -6550.438659] SLOW spr round 39 (radius: 20) [01:29:47 -6550.119996] SLOW spr round 40 (radius: 5) [01:30:04 -6550.116842] SLOW spr round 41 (radius: 10) [01:30:18 -6550.116715] SLOW spr round 42 (radius: 15) [01:30:35 -6550.116681] SLOW spr round 43 (radius: 20) [01:30:54 -6549.598838] SLOW spr round 44 (radius: 5) [01:31:10 -6549.598828] SLOW spr round 45 (radius: 10) [01:31:24 -6549.598827] SLOW spr round 46 (radius: 15) [01:31:41 -6549.598827] SLOW spr round 47 (radius: 20) [01:32:00 -6549.598827] SLOW spr round 48 (radius: 25) [01:32:18 -6549.121512] SLOW spr round 49 (radius: 5) [01:32:34 -6549.121504] SLOW spr round 50 (radius: 10) [01:32:49 -6549.121504] SLOW spr round 51 (radius: 15) [01:33:06 -6549.121504] SLOW spr round 52 (radius: 20) [01:33:25 -6549.121504] SLOW spr round 53 (radius: 25) [01:33:43 -6549.121504] Model parameter optimization (eps = 0.100000) [01:33:45] ML tree search #6, logLikelihood: -6548.833956 [01:33:45 -17661.791324] Initial branch length optimization [01:33:46 -14623.897692] Model parameter optimization (eps = 10.000000) [01:33:50 -14474.887230] AUTODETECT spr round 1 (radius: 5) [01:34:00 -11396.024805] AUTODETECT spr round 2 (radius: 10) [01:34:13 -9480.188836] AUTODETECT spr round 3 (radius: 15) [01:34:27 -8379.335069] AUTODETECT spr round 4 (radius: 20) [01:34:41 -7903.445508] AUTODETECT spr round 5 (radius: 25) [01:34:56 -7669.802215] SPR radius for FAST iterations: 25 (autodetect) [01:34:56 -7669.802215] Model parameter optimization (eps = 3.000000) [01:35:00 -7658.867188] FAST spr round 1 (radius: 25) [01:35:13 -6989.022010] FAST spr round 2 (radius: 25) [01:35:24 -6937.841073] FAST spr round 3 (radius: 25) [01:35:35 -6936.893039] FAST spr round 4 (radius: 25) [01:35:46 -6936.690654] FAST spr round 5 (radius: 25) [01:35:56 -6936.690323] Model parameter optimization (eps = 1.000000) [01:35:57 -6936.172482] SLOW spr round 1 (radius: 5) [01:36:11 -6935.693599] SLOW spr round 2 (radius: 5) [01:36:23 -6935.692946] SLOW spr round 3 (radius: 10) [01:36:36 -6933.898105] SLOW spr round 4 (radius: 5) [01:36:51 -6931.739298] SLOW spr round 5 (radius: 5) [01:37:05 -6931.693987] SLOW spr round 6 (radius: 10) [01:37:18 -6931.525928] SLOW spr round 7 (radius: 5) [01:37:33 -6931.525920] SLOW spr round 8 (radius: 10) [01:37:46 -6929.951808] SLOW spr round 9 (radius: 5) [01:38:01 -6929.951672] SLOW spr round 10 (radius: 10) [01:38:15 -6929.606304] SLOW spr round 11 (radius: 5) [01:38:30 -6928.362950] SLOW spr round 12 (radius: 5) [01:38:43 -6928.362726] SLOW spr round 13 (radius: 10) [01:38:56 -6928.362722] SLOW spr round 14 (radius: 15) [01:39:13 -6924.937996] SLOW spr round 15 (radius: 5) [01:39:30 -6913.673970] SLOW spr round 16 (radius: 5) [01:39:44 -6910.916620] SLOW spr round 17 (radius: 5) [01:39:57 -6910.916601] SLOW spr round 18 (radius: 10) [01:40:10 -6910.916601] SLOW spr round 19 (radius: 15) [01:40:27 -6909.859921] SLOW spr round 20 (radius: 5) [01:40:43 -6909.859918] SLOW spr round 21 (radius: 10) [01:40:58 -6909.859918] SLOW spr round 22 (radius: 15) [01:41:15 -6909.784219] SLOW spr round 23 (radius: 20) [01:41:37 -6775.311217] SLOW spr round 24 (radius: 5) [01:41:55 -6649.459596] SLOW spr round 25 (radius: 5) [01:42:10 -6592.106337] SLOW spr round 26 (radius: 5) [01:42:24 -6588.419694] SLOW spr round 27 (radius: 5) [01:42:37 -6577.623558] SLOW spr round 28 (radius: 5) [01:42:50 -6577.343335] SLOW spr round 29 (radius: 5) [01:43:03 -6577.342606] SLOW spr round 30 (radius: 10) [01:43:17 -6555.933185] SLOW spr round 31 (radius: 5) [01:43:33 -6555.932944] SLOW spr round 32 (radius: 10) [01:43:47 -6553.007312] SLOW spr round 33 (radius: 5) [01:44:03 -6539.097290] SLOW spr round 34 (radius: 5) [01:44:17 -6539.096542] SLOW spr round 35 (radius: 10) [01:44:30 -6539.096534] SLOW spr round 36 (radius: 15) [01:44:49 -6527.112233] SLOW spr round 37 (radius: 5) [01:45:06 -6525.052287] SLOW spr round 38 (radius: 5) [01:45:21 -6524.156980] SLOW spr round 39 (radius: 5) [01:45:34 -6524.156914] SLOW spr round 40 (radius: 10) [01:45:48 -6524.156900] SLOW spr round 41 (radius: 15) [01:46:06 -6523.635391] SLOW spr round 42 (radius: 5) [01:46:23 -6523.158991] SLOW spr round 43 (radius: 5) [01:46:38 -6521.877139] SLOW spr round 44 (radius: 5) [01:46:51 -6521.500917] SLOW spr round 45 (radius: 5) [01:47:05 -6521.496643] SLOW spr round 46 (radius: 10) [01:47:18 -6521.496631] SLOW spr round 47 (radius: 15) [01:47:36 -6521.101422] SLOW spr round 48 (radius: 5) [01:47:53 -6518.584570] SLOW spr round 49 (radius: 5) [01:48:08 -6518.583905] SLOW spr round 50 (radius: 10) [01:48:21 -6518.583901] SLOW spr round 51 (radius: 15) [01:48:39 -6518.361932] SLOW spr round 52 (radius: 5) [01:48:56 -6518.361922] SLOW spr round 53 (radius: 10) [01:49:10 -6518.361922] SLOW spr round 54 (radius: 15) [01:49:27 -6518.192526] SLOW spr round 55 (radius: 5) [01:49:44 -6518.192416] SLOW spr round 56 (radius: 10) [01:49:59 -6518.192398] SLOW spr round 57 (radius: 15) [01:50:16 -6505.425911] SLOW spr round 58 (radius: 5) [01:50:33 -6503.408761] SLOW spr round 59 (radius: 5) [01:50:47 -6503.407463] SLOW spr round 60 (radius: 10) [01:51:01 -6503.407406] SLOW spr round 61 (radius: 15) [01:51:19 -6503.097187] SLOW spr round 62 (radius: 5) [01:51:36 -6503.097180] SLOW spr round 63 (radius: 10) [01:51:50 -6503.097180] SLOW spr round 64 (radius: 15) [01:52:07 -6503.097180] SLOW spr round 65 (radius: 20) [01:52:28 -6489.129455] SLOW spr round 66 (radius: 5) [01:52:45 -6489.129253] SLOW spr round 67 (radius: 10) [01:53:00 -6488.310430] SLOW spr round 68 (radius: 5) [01:53:16 -6488.310381] SLOW spr round 69 (radius: 10) [01:53:30 -6488.310380] SLOW spr round 70 (radius: 15) [01:53:47 -6488.310380] SLOW spr round 71 (radius: 20) [01:54:08 -6488.079216] SLOW spr round 72 (radius: 5) [01:54:25 -6488.062786] SLOW spr round 73 (radius: 10) [01:54:40 -6488.013632] SLOW spr round 74 (radius: 15) [01:54:56 -6488.013521] SLOW spr round 75 (radius: 20) [01:55:15 -6488.013501] SLOW spr round 76 (radius: 25) [01:55:35 -6460.250292] SLOW spr round 77 (radius: 5) [01:55:52 -6457.981016] SLOW spr round 78 (radius: 5) [01:56:06 -6457.980722] SLOW spr round 79 (radius: 10) [01:56:19 -6457.980698] SLOW spr round 80 (radius: 15) [01:56:35 -6457.980696] SLOW spr round 81 (radius: 20) [01:56:54 -6457.980695] SLOW spr round 82 (radius: 25) [01:57:13 -6457.980695] Model parameter optimization (eps = 0.100000) [01:57:15] ML tree search #7, logLikelihood: -6457.606490 [01:57:15 -17610.027340] Initial branch length optimization [01:57:16 -14590.211915] Model parameter optimization (eps = 10.000000) [01:57:19 -14439.905770] AUTODETECT spr round 1 (radius: 5) [01:57:30 -11181.579669] AUTODETECT spr round 2 (radius: 10) [01:57:42 -9271.984847] AUTODETECT spr round 3 (radius: 15) [01:57:56 -8165.391923] AUTODETECT spr round 4 (radius: 20) [01:58:11 -7745.643401] AUTODETECT spr round 5 (radius: 25) [01:58:26 -7582.486104] SPR radius for FAST iterations: 25 (autodetect) [01:58:26 -7582.486104] Model parameter optimization (eps = 3.000000) [01:58:30 -7576.274614] FAST spr round 1 (radius: 25) [01:58:42 -6946.589793] FAST spr round 2 (radius: 25) [01:58:54 -6934.322701] FAST spr round 3 (radius: 25) [01:59:05 -6931.692758] FAST spr round 4 (radius: 25) [01:59:16 -6928.060380] FAST spr round 5 (radius: 25) [01:59:27 -6927.439676] FAST spr round 6 (radius: 25) [01:59:37 -6927.439674] Model parameter optimization (eps = 1.000000) [01:59:38 -6927.073031] SLOW spr round 1 (radius: 5) [01:59:51 -6920.533710] SLOW spr round 2 (radius: 5) [02:00:04 -6920.533061] SLOW spr round 3 (radius: 10) [02:00:16 -6920.047183] SLOW spr round 4 (radius: 5) [02:00:31 -6920.047161] SLOW spr round 5 (radius: 10) [02:00:45 -6917.618235] SLOW spr round 6 (radius: 5) [02:00:59 -6917.618232] SLOW spr round 7 (radius: 10) [02:01:13 -6917.618231] SLOW spr round 8 (radius: 15) [02:01:29 -6912.916203] SLOW spr round 9 (radius: 5) [02:01:44 -6910.531276] SLOW spr round 10 (radius: 5) [02:01:58 -6910.530427] SLOW spr round 11 (radius: 10) [02:02:11 -6910.530396] SLOW spr round 12 (radius: 15) [02:02:27 -6908.213998] SLOW spr round 13 (radius: 5) [02:02:43 -6906.201859] SLOW spr round 14 (radius: 5) [02:02:57 -6906.122760] SLOW spr round 15 (radius: 10) [02:03:09 -6906.121604] SLOW spr round 16 (radius: 15) [02:03:25 -6906.121553] SLOW spr round 17 (radius: 20) [02:03:43 -6901.420759] SLOW spr round 18 (radius: 5) [02:03:59 -6901.404407] SLOW spr round 19 (radius: 10) [02:04:13 -6900.794733] SLOW spr round 20 (radius: 5) [02:04:27 -6900.793649] SLOW spr round 21 (radius: 10) [02:04:40 -6900.793389] SLOW spr round 22 (radius: 15) [02:04:56 -6900.793338] SLOW spr round 23 (radius: 20) [02:05:13 -6900.548373] SLOW spr round 24 (radius: 5) [02:05:29 -6900.548303] SLOW spr round 25 (radius: 10) [02:05:43 -6900.548302] SLOW spr round 26 (radius: 15) [02:05:58 -6900.548302] SLOW spr round 27 (radius: 20) [02:06:16 -6900.548302] SLOW spr round 28 (radius: 25) [02:06:35 -6899.165565] SLOW spr round 29 (radius: 5) [02:06:52 -6898.592519] SLOW spr round 30 (radius: 5) [02:07:07 -6898.592430] SLOW spr round 31 (radius: 10) [02:07:20 -6898.592426] SLOW spr round 32 (radius: 15) [02:07:37 -6888.748470] SLOW spr round 33 (radius: 5) [02:07:54 -6869.193511] SLOW spr round 34 (radius: 5) [02:08:09 -6869.193419] SLOW spr round 35 (radius: 10) [02:08:22 -6869.193416] SLOW spr round 36 (radius: 15) [02:08:40 -6844.898790] SLOW spr round 37 (radius: 5) [02:08:57 -6844.766131] SLOW spr round 38 (radius: 5) [02:09:11 -6844.763227] SLOW spr round 39 (radius: 10) [02:09:25 -6844.762204] SLOW spr round 40 (radius: 15) [02:09:42 -6844.371628] SLOW spr round 41 (radius: 5) [02:09:58 -6844.176843] SLOW spr round 42 (radius: 5) [02:10:14 -6843.042320] SLOW spr round 43 (radius: 5) [02:10:27 -6843.041614] SLOW spr round 44 (radius: 10) [02:10:41 -6843.041585] SLOW spr round 45 (radius: 15) [02:10:58 -6842.802110] SLOW spr round 46 (radius: 5) [02:11:15 -6842.415721] SLOW spr round 47 (radius: 5) [02:11:29 -6842.414521] SLOW spr round 48 (radius: 10) [02:11:43 -6842.414458] SLOW spr round 49 (radius: 15) [02:12:00 -6842.341878] SLOW spr round 50 (radius: 20) [02:12:18 -6842.042719] SLOW spr round 51 (radius: 5) [02:12:35 -6842.042428] SLOW spr round 52 (radius: 10) [02:12:50 -6842.042416] SLOW spr round 53 (radius: 15) [02:13:07 -6842.042414] SLOW spr round 54 (radius: 20) [02:13:25 -6842.042414] SLOW spr round 55 (radius: 25) [02:13:44 -6841.710006] SLOW spr round 56 (radius: 5) [02:14:01 -6841.709771] SLOW spr round 57 (radius: 10) [02:14:15 -6841.709766] SLOW spr round 58 (radius: 15) [02:14:31 -6841.709766] SLOW spr round 59 (radius: 20) [02:14:48 -6841.709766] SLOW spr round 60 (radius: 25) [02:15:05 -6841.709766] Model parameter optimization (eps = 0.100000) [02:15:07] ML tree search #8, logLikelihood: -6841.206500 [02:15:07 -17745.100706] Initial branch length optimization [02:15:07 -14616.813834] Model parameter optimization (eps = 10.000000) [02:15:12 -14497.877739] AUTODETECT spr round 1 (radius: 5) [02:15:23 -11333.733080] AUTODETECT spr round 2 (radius: 10) [02:15:35 -9429.302649] AUTODETECT spr round 3 (radius: 15) [02:15:50 -8473.071514] AUTODETECT spr round 4 (radius: 20) [02:16:05 -7973.310321] AUTODETECT spr round 5 (radius: 25) [02:16:22 -7598.744793] SPR radius for FAST iterations: 25 (autodetect) [02:16:22 -7598.744793] Model parameter optimization (eps = 3.000000) [02:16:25 -7555.474576] FAST spr round 1 (radius: 25) [02:16:38 -6841.919487] FAST spr round 2 (radius: 25) [02:16:50 -6767.758208] FAST spr round 3 (radius: 25) [02:17:01 -6759.373004] FAST spr round 4 (radius: 25) [02:17:12 -6759.196945] FAST spr round 5 (radius: 25) [02:17:22 -6759.196477] Model parameter optimization (eps = 1.000000) [02:17:24 -6757.844939] SLOW spr round 1 (radius: 5) [02:17:38 -6756.903483] SLOW spr round 2 (radius: 5) [02:17:50 -6756.579517] SLOW spr round 3 (radius: 5) [02:18:03 -6756.578908] SLOW spr round 4 (radius: 10) [02:18:15 -6753.797812] SLOW spr round 5 (radius: 5) [02:18:31 -6753.795621] SLOW spr round 6 (radius: 10) [02:18:44 -6752.051495] SLOW spr round 7 (radius: 5) [02:18:59 -6752.050933] SLOW spr round 8 (radius: 10) [02:19:12 -6752.050773] SLOW spr round 9 (radius: 15) [02:19:30 -6747.438052] SLOW spr round 10 (radius: 5) [02:19:46 -6744.511283] SLOW spr round 11 (radius: 5) [02:20:00 -6743.417797] SLOW spr round 12 (radius: 5) [02:20:13 -6743.406835] SLOW spr round 13 (radius: 10) [02:20:25 -6743.406833] SLOW spr round 14 (radius: 15) [02:20:43 -6743.406833] SLOW spr round 15 (radius: 20) [02:21:03 -6725.343557] SLOW spr round 16 (radius: 5) [02:21:19 -6720.480840] SLOW spr round 17 (radius: 5) [02:21:33 -6720.480052] SLOW spr round 18 (radius: 10) [02:21:46 -6720.381784] SLOW spr round 19 (radius: 15) [02:22:03 -6719.974199] SLOW spr round 20 (radius: 5) [02:22:19 -6719.974061] SLOW spr round 21 (radius: 10) [02:22:32 -6719.974006] SLOW spr round 22 (radius: 15) [02:22:49 -6719.973985] SLOW spr round 23 (radius: 20) [02:23:09 -6715.785891] SLOW spr round 24 (radius: 5) [02:23:25 -6713.254132] SLOW spr round 25 (radius: 5) [02:23:39 -6713.254059] SLOW spr round 26 (radius: 10) [02:23:51 -6713.254057] SLOW spr round 27 (radius: 15) [02:24:09 -6713.254056] SLOW spr round 28 (radius: 20) [02:24:28 -6713.254056] SLOW spr round 29 (radius: 25) [02:24:48 -6708.040207] SLOW spr round 30 (radius: 5) [02:25:03 -6708.038415] SLOW spr round 31 (radius: 10) [02:25:17 -6708.038360] SLOW spr round 32 (radius: 15) [02:25:34 -6708.038358] SLOW spr round 33 (radius: 20) [02:25:53 -6706.576971] SLOW spr round 34 (radius: 5) [02:26:09 -6706.576433] SLOW spr round 35 (radius: 10) [02:26:23 -6706.576308] SLOW spr round 36 (radius: 15) [02:26:39 -6706.576282] SLOW spr round 37 (radius: 20) [02:26:59 -6706.259954] SLOW spr round 38 (radius: 5) [02:27:15 -6706.234783] SLOW spr round 39 (radius: 10) [02:27:30 -6706.233959] SLOW spr round 40 (radius: 15) [02:27:48 -6704.431655] SLOW spr round 41 (radius: 5) [02:28:04 -6704.050792] SLOW spr round 42 (radius: 5) [02:28:18 -6704.050038] SLOW spr round 43 (radius: 10) [02:28:31 -6704.050000] SLOW spr round 44 (radius: 15) [02:28:49 -6704.049996] SLOW spr round 45 (radius: 20) [02:29:08 -6704.049996] SLOW spr round 46 (radius: 25) [02:29:28 -6701.801829] SLOW spr round 47 (radius: 5) [02:29:44 -6701.798225] SLOW spr round 48 (radius: 10) [02:29:58 -6701.797718] SLOW spr round 49 (radius: 15) [02:30:15 -6701.797634] SLOW spr round 50 (radius: 20) [02:30:35 -6701.797618] SLOW spr round 51 (radius: 25) [02:30:54 -6701.797614] Model parameter optimization (eps = 0.100000) [02:30:56] ML tree search #9, logLikelihood: -6700.894104 [02:30:56 -17575.465131] Initial branch length optimization [02:30:56 -14609.737388] Model parameter optimization (eps = 10.000000) [02:31:01 -14462.299055] AUTODETECT spr round 1 (radius: 5) [02:31:11 -11418.815385] AUTODETECT spr round 2 (radius: 10) [02:31:23 -9334.062253] AUTODETECT spr round 3 (radius: 15) [02:31:36 -8311.652516] AUTODETECT spr round 4 (radius: 20) [02:31:51 -7972.361129] AUTODETECT spr round 5 (radius: 25) [02:32:06 -7594.119291] SPR radius for FAST iterations: 25 (autodetect) [02:32:06 -7594.119291] Model parameter optimization (eps = 3.000000) [02:32:11 -7587.915217] FAST spr round 1 (radius: 25) [02:32:23 -6950.266608] FAST spr round 2 (radius: 25) [02:32:35 -6790.656495] FAST spr round 3 (radius: 25) [02:32:46 -6698.715847] FAST spr round 4 (radius: 25) [02:32:56 -6698.715213] Model parameter optimization (eps = 1.000000) [02:32:58 -6696.518030] SLOW spr round 1 (radius: 5) [02:33:12 -6694.466466] SLOW spr round 2 (radius: 5) [02:33:24 -6694.438158] SLOW spr round 3 (radius: 10) [02:33:37 -6693.580632] SLOW spr round 4 (radius: 5) [02:33:53 -6690.372023] SLOW spr round 5 (radius: 5) [02:34:06 -6690.370493] SLOW spr round 6 (radius: 10) [02:34:19 -6690.369759] SLOW spr round 7 (radius: 15) [02:34:37 -6679.248580] SLOW spr round 8 (radius: 5) [02:34:53 -6674.166309] SLOW spr round 9 (radius: 5) [02:35:07 -6674.086822] SLOW spr round 10 (radius: 10) [02:35:20 -6673.186971] SLOW spr round 11 (radius: 5) [02:35:36 -6673.186957] SLOW spr round 12 (radius: 10) [02:35:49 -6669.181370] SLOW spr round 13 (radius: 5) [02:36:02 -6669.181367] SLOW spr round 14 (radius: 10) [02:36:15 -6669.181367] SLOW spr round 15 (radius: 15) [02:36:31 -6663.642811] SLOW spr round 16 (radius: 5) [02:36:46 -6648.999135] SLOW spr round 17 (radius: 5) [02:36:59 -6643.128552] SLOW spr round 18 (radius: 5) [02:37:11 -6643.121708] SLOW spr round 19 (radius: 10) [02:37:23 -6642.132914] SLOW spr round 20 (radius: 5) [02:37:37 -6625.838488] SLOW spr round 21 (radius: 5) [02:37:50 -6564.137755] SLOW spr round 22 (radius: 5) [02:38:03 -6530.278817] SLOW spr round 23 (radius: 5) [02:38:14 -6524.262161] SLOW spr round 24 (radius: 5) [02:38:26 -6524.262143] SLOW spr round 25 (radius: 10) [02:38:37 -6524.262143] SLOW spr round 26 (radius: 15) [02:38:54 -6524.209932] SLOW spr round 27 (radius: 20) [02:39:11 -6512.829027] SLOW spr round 28 (radius: 5) [02:39:27 -6504.786308] SLOW spr round 29 (radius: 5) [02:39:40 -6504.785799] SLOW spr round 30 (radius: 10) [02:39:52 -6504.785789] SLOW spr round 31 (radius: 15) [02:40:07 -6504.785788] SLOW spr round 32 (radius: 20) [02:40:25 -6504.785788] SLOW spr round 33 (radius: 25) [02:40:40 -6504.367812] SLOW spr round 34 (radius: 5) [02:40:56 -6491.256460] SLOW spr round 35 (radius: 5) [02:41:09 -6491.256460] SLOW spr round 36 (radius: 10) [02:41:21 -6491.256448] SLOW spr round 37 (radius: 15) [02:41:36 -6491.256448] SLOW spr round 38 (radius: 20) [02:41:53 -6491.256448] SLOW spr round 39 (radius: 25) [02:42:09 -6491.256448] Model parameter optimization (eps = 0.100000) [02:42:11] ML tree search #10, logLikelihood: -6491.012794 [02:42:11 -17750.332382] Initial branch length optimization [02:42:11 -14669.401150] Model parameter optimization (eps = 10.000000) [02:42:15 -14529.210500] AUTODETECT spr round 1 (radius: 5) [02:42:25 -11400.314309] AUTODETECT spr round 2 (radius: 10) [02:42:36 -9144.805903] AUTODETECT spr round 3 (radius: 15) [02:42:50 -8356.486087] AUTODETECT spr round 4 (radius: 20) [02:43:05 -7811.549945] AUTODETECT spr round 5 (radius: 25) [02:43:20 -7696.076033] SPR radius for FAST iterations: 25 (autodetect) [02:43:20 -7696.076033] Model parameter optimization (eps = 3.000000) [02:43:24 -7665.204906] FAST spr round 1 (radius: 25) [02:43:37 -6939.574136] FAST spr round 2 (radius: 25) [02:43:48 -6869.214509] FAST spr round 3 (radius: 25) [02:43:59 -6849.652131] FAST spr round 4 (radius: 25) [02:44:10 -6849.193481] FAST spr round 5 (radius: 25) [02:44:20 -6849.193468] Model parameter optimization (eps = 1.000000) [02:44:21 -6848.878993] SLOW spr round 1 (radius: 5) [02:44:34 -6847.399109] SLOW spr round 2 (radius: 5) [02:44:47 -6847.129232] SLOW spr round 3 (radius: 5) [02:44:59 -6847.129216] SLOW spr round 4 (radius: 10) [02:45:10 -6845.554241] SLOW spr round 5 (radius: 5) [02:45:25 -6845.259859] SLOW spr round 6 (radius: 5) [02:45:39 -6845.259840] SLOW spr round 7 (radius: 10) [02:45:51 -6845.259830] SLOW spr round 8 (radius: 15) [02:46:09 -6837.054042] SLOW spr round 9 (radius: 5) [02:46:24 -6836.076018] SLOW spr round 10 (radius: 5) [02:46:39 -6836.075833] SLOW spr round 11 (radius: 10) [02:46:52 -6836.075821] SLOW spr round 12 (radius: 15) [02:47:10 -6835.164768] SLOW spr round 13 (radius: 5) [02:47:25 -6834.719816] SLOW spr round 14 (radius: 5) [02:47:39 -6833.793928] SLOW spr round 15 (radius: 5) [02:47:51 -6833.793923] SLOW spr round 16 (radius: 10) [02:48:02 -6833.793922] SLOW spr round 17 (radius: 15) [02:48:19 -6833.793922] SLOW spr round 18 (radius: 20) [02:48:37 -6833.096308] SLOW spr round 19 (radius: 5) [02:48:51 -6832.562857] SLOW spr round 20 (radius: 5) [02:49:04 -6832.562857] SLOW spr round 21 (radius: 10) [02:49:16 -6832.562857] SLOW spr round 22 (radius: 15) [02:49:32 -6832.562857] SLOW spr round 23 (radius: 20) [02:49:51 -6832.562857] SLOW spr round 24 (radius: 25) [02:50:10 -6827.360191] SLOW spr round 25 (radius: 5) [02:50:26 -6827.360170] SLOW spr round 26 (radius: 10) [02:50:41 -6827.360170] SLOW spr round 27 (radius: 15) [02:50:58 -6827.360170] SLOW spr round 28 (radius: 20) [02:51:18 -6827.360170] SLOW spr round 29 (radius: 25) [02:51:38 -6822.099506] SLOW spr round 30 (radius: 5) [02:51:55 -6811.245868] SLOW spr round 31 (radius: 5) [02:52:10 -6789.231148] SLOW spr round 32 (radius: 5) [02:52:23 -6779.479083] SLOW spr round 33 (radius: 5) [02:52:36 -6772.383351] SLOW spr round 34 (radius: 5) [02:52:48 -6770.445627] SLOW spr round 35 (radius: 5) [02:53:00 -6770.445602] SLOW spr round 36 (radius: 10) [02:53:13 -6763.487673] SLOW spr round 37 (radius: 5) [02:53:28 -6763.487673] SLOW spr round 38 (radius: 10) [02:53:41 -6763.487673] SLOW spr round 39 (radius: 15) [02:53:58 -6763.039074] SLOW spr round 40 (radius: 5) [02:54:13 -6763.038952] SLOW spr round 41 (radius: 10) [02:54:27 -6763.038952] SLOW spr round 42 (radius: 15) [02:54:44 -6763.038952] SLOW spr round 43 (radius: 20) [02:55:03 -6763.038952] SLOW spr round 44 (radius: 25) [02:55:22 -6762.318874] SLOW spr round 45 (radius: 5) [02:55:38 -6762.179982] SLOW spr round 46 (radius: 5) [02:55:53 -6761.471992] SLOW spr round 47 (radius: 5) [02:56:06 -6761.397428] SLOW spr round 48 (radius: 10) [02:56:19 -6761.397427] SLOW spr round 49 (radius: 15) [02:56:37 -6761.397427] SLOW spr round 50 (radius: 20) [02:56:57 -6761.397427] SLOW spr round 51 (radius: 25) [02:57:16 -6761.397427] Model parameter optimization (eps = 0.100000) [02:57:18] ML tree search #11, logLikelihood: -6761.136635 [02:57:18 -17584.193448] Initial branch length optimization [02:57:19 -14445.461657] Model parameter optimization (eps = 10.000000) [02:57:22 -14334.824971] AUTODETECT spr round 1 (radius: 5) [02:57:33 -11231.866007] AUTODETECT spr round 2 (radius: 10) [02:57:45 -9629.554591] AUTODETECT spr round 3 (radius: 15) [02:58:00 -8273.930966] AUTODETECT spr round 4 (radius: 20) [02:58:16 -7548.214973] AUTODETECT spr round 5 (radius: 25) [02:58:31 -7197.329575] SPR radius for FAST iterations: 25 (autodetect) [02:58:31 -7197.329575] Model parameter optimization (eps = 3.000000) [02:58:35 -7192.600162] FAST spr round 1 (radius: 25) [02:58:48 -6638.125217] FAST spr round 2 (radius: 25) [02:59:00 -6542.985380] FAST spr round 3 (radius: 25) [02:59:12 -6539.305924] FAST spr round 4 (radius: 25) [02:59:23 -6538.420332] FAST spr round 5 (radius: 25) [02:59:34 -6538.420313] Model parameter optimization (eps = 1.000000) [02:59:35 -6538.347643] SLOW spr round 1 (radius: 5) [02:59:49 -6533.482681] SLOW spr round 2 (radius: 5) [03:00:03 -6533.482496] SLOW spr round 3 (radius: 10) [03:00:17 -6531.011044] SLOW spr round 4 (radius: 5) [03:00:34 -6531.011007] SLOW spr round 5 (radius: 10) [03:00:49 -6526.584614] SLOW spr round 6 (radius: 5) [03:01:06 -6524.617170] SLOW spr round 7 (radius: 5) [03:01:22 -6524.615698] SLOW spr round 8 (radius: 10) [03:01:36 -6523.474892] SLOW spr round 9 (radius: 5) [03:01:53 -6522.983623] SLOW spr round 10 (radius: 5) [03:02:09 -6520.647372] SLOW spr round 11 (radius: 5) [03:02:24 -6520.592621] SLOW spr round 12 (radius: 10) [03:02:38 -6520.592460] SLOW spr round 13 (radius: 15) [03:02:58 -6501.408879] SLOW spr round 14 (radius: 5) [03:03:16 -6498.440591] SLOW spr round 15 (radius: 5) [03:03:31 -6498.440484] SLOW spr round 16 (radius: 10) [03:03:45 -6498.440482] SLOW spr round 17 (radius: 15) [03:04:04 -6491.761704] SLOW spr round 18 (radius: 5) [03:04:21 -6483.732292] SLOW spr round 19 (radius: 5) [03:04:37 -6483.730872] SLOW spr round 20 (radius: 10) [03:04:51 -6483.730740] SLOW spr round 21 (radius: 15) [03:05:10 -6483.730716] SLOW spr round 22 (radius: 20) [03:05:30 -6478.679200] SLOW spr round 23 (radius: 5) [03:05:48 -6478.173651] SLOW spr round 24 (radius: 5) [03:06:04 -6478.170966] SLOW spr round 25 (radius: 10) [03:06:19 -6474.217771] SLOW spr round 26 (radius: 5) [03:06:36 -6471.879647] SLOW spr round 27 (radius: 5) [03:06:51 -6471.879567] SLOW spr round 28 (radius: 10) [03:07:05 -6471.879537] SLOW spr round 29 (radius: 15) [03:07:23 -6471.879519] SLOW spr round 30 (radius: 20) [03:07:43 -6469.223410] SLOW spr round 31 (radius: 5) [03:08:00 -6468.840128] SLOW spr round 32 (radius: 5) [03:08:16 -6468.840064] SLOW spr round 33 (radius: 10) [03:08:30 -6468.840063] SLOW spr round 34 (radius: 15) [03:08:48 -6468.840063] SLOW spr round 35 (radius: 20) [03:09:08 -6468.840063] SLOW spr round 36 (radius: 25) [03:09:28 -6467.727398] SLOW spr round 37 (radius: 5) [03:09:45 -6467.525562] SLOW spr round 38 (radius: 5) [03:10:01 -6467.524929] SLOW spr round 39 (radius: 10) [03:10:16 -6467.524786] SLOW spr round 40 (radius: 15) [03:10:34 -6467.524736] SLOW spr round 41 (radius: 20) [03:10:53 -6467.524728] SLOW spr round 42 (radius: 25) [03:11:13 -6467.524726] Model parameter optimization (eps = 0.100000) [03:11:16] ML tree search #12, logLikelihood: -6466.974720 [03:11:16 -17711.592117] Initial branch length optimization [03:11:16 -14719.049290] Model parameter optimization (eps = 10.000000) [03:11:21 -14630.734608] AUTODETECT spr round 1 (radius: 5) [03:11:32 -11252.061861] AUTODETECT spr round 2 (radius: 10) [03:11:46 -9391.005992] AUTODETECT spr round 3 (radius: 15) [03:12:02 -8320.522449] AUTODETECT spr round 4 (radius: 20) [03:12:19 -7895.893084] AUTODETECT spr round 5 (radius: 25) [03:12:37 -7439.663022] SPR radius for FAST iterations: 25 (autodetect) [03:12:37 -7439.663022] Model parameter optimization (eps = 3.000000) [03:12:40 -7427.703378] FAST spr round 1 (radius: 25) [03:12:55 -6740.586372] FAST spr round 2 (radius: 25) [03:13:08 -6668.878200] FAST spr round 3 (radius: 25) [03:13:21 -6658.249464] FAST spr round 4 (radius: 25) [03:13:33 -6658.233525] Model parameter optimization (eps = 1.000000) [03:13:34 -6657.549450] SLOW spr round 1 (radius: 5) [03:13:49 -6655.687719] SLOW spr round 2 (radius: 5) [03:14:03 -6655.614035] SLOW spr round 3 (radius: 10) [03:14:17 -6655.545901] SLOW spr round 4 (radius: 15) [03:14:38 -6613.462076] SLOW spr round 5 (radius: 5) [03:14:55 -6610.078416] SLOW spr round 6 (radius: 5) [03:15:10 -6610.078335] SLOW spr round 7 (radius: 10) [03:15:25 -6609.382880] SLOW spr round 8 (radius: 5) [03:15:41 -6609.382805] SLOW spr round 9 (radius: 10) [03:15:56 -6609.382742] SLOW spr round 10 (radius: 15) [03:16:14 -6607.033936] SLOW spr round 11 (radius: 5) [03:16:31 -6607.033879] SLOW spr round 12 (radius: 10) [03:16:46 -6607.033827] SLOW spr round 13 (radius: 15) [03:17:04 -6607.033779] SLOW spr round 14 (radius: 20) [03:17:25 -6604.614438] SLOW spr round 15 (radius: 5) [03:17:42 -6604.614099] SLOW spr round 16 (radius: 10) [03:17:57 -6604.313238] SLOW spr round 17 (radius: 5) [03:18:14 -6604.313219] SLOW spr round 18 (radius: 10) [03:18:28 -6604.313205] SLOW spr round 19 (radius: 15) [03:18:46 -6604.313192] SLOW spr round 20 (radius: 20) [03:19:08 -6602.165273] SLOW spr round 21 (radius: 5) [03:19:25 -6602.132745] SLOW spr round 22 (radius: 10) [03:19:41 -6602.132655] SLOW spr round 23 (radius: 15) [03:19:59 -6601.393793] SLOW spr round 24 (radius: 5) [03:20:16 -6601.279153] SLOW spr round 25 (radius: 5) [03:20:31 -6601.278840] SLOW spr round 26 (radius: 10) [03:20:45 -6601.278805] SLOW spr round 27 (radius: 15) [03:21:04 -6601.278796] SLOW spr round 28 (radius: 20) [03:21:26 -6594.507539] SLOW spr round 29 (radius: 5) [03:21:44 -6593.781044] SLOW spr round 30 (radius: 5) [03:21:59 -6593.781014] SLOW spr round 31 (radius: 10) [03:22:14 -6593.781008] SLOW spr round 32 (radius: 15) [03:22:33 -6593.781003] SLOW spr round 33 (radius: 20) [03:22:54 -6593.780998] SLOW spr round 34 (radius: 25) [03:23:17 -6568.009363] SLOW spr round 35 (radius: 5) [03:23:34 -6562.035150] SLOW spr round 36 (radius: 5) [03:23:50 -6561.978551] SLOW spr round 37 (radius: 10) [03:24:05 -6559.144379] SLOW spr round 38 (radius: 5) [03:24:22 -6557.300804] SLOW spr round 39 (radius: 5) [03:24:37 -6557.243853] SLOW spr round 40 (radius: 10) [03:24:51 -6557.243842] SLOW spr round 41 (radius: 15) [03:25:10 -6557.243838] SLOW spr round 42 (radius: 20) [03:25:30 -6556.817234] SLOW spr round 43 (radius: 5) [03:25:48 -6556.816343] SLOW spr round 44 (radius: 10) [03:26:03 -6556.816301] SLOW spr round 45 (radius: 15) [03:26:20 -6556.816277] SLOW spr round 46 (radius: 20) [03:26:41 -6556.407287] SLOW spr round 47 (radius: 5) [03:26:58 -6556.407282] SLOW spr round 48 (radius: 10) [03:27:14 -6556.407280] SLOW spr round 49 (radius: 15) [03:27:31 -6556.407279] SLOW spr round 50 (radius: 20) [03:27:52 -6556.407277] SLOW spr round 51 (radius: 25) [03:28:15 -6554.339591] SLOW spr round 52 (radius: 5) [03:28:32 -6554.339562] SLOW spr round 53 (radius: 10) [03:28:48 -6554.339554] SLOW spr round 54 (radius: 15) [03:29:06 -6554.339550] SLOW spr round 55 (radius: 20) [03:29:27 -6551.371305] SLOW spr round 56 (radius: 5) [03:29:45 -6550.898454] SLOW spr round 57 (radius: 5) [03:30:00 -6550.897961] SLOW spr round 58 (radius: 10) [03:30:14 -6550.897929] SLOW spr round 59 (radius: 15) [03:30:33 -6539.639216] SLOW spr round 60 (radius: 5) [03:30:50 -6538.362416] SLOW spr round 61 (radius: 5) [03:31:05 -6538.012596] SLOW spr round 62 (radius: 5) [03:31:19 -6538.012117] SLOW spr round 63 (radius: 10) [03:31:33 -6538.012117] SLOW spr round 64 (radius: 15) [03:31:52 -6534.048248] SLOW spr round 65 (radius: 5) [03:32:09 -6533.822731] SLOW spr round 66 (radius: 5) [03:32:24 -6533.821573] SLOW spr round 67 (radius: 10) [03:32:38 -6533.820700] SLOW spr round 68 (radius: 15) [03:32:56 -6532.412671] SLOW spr round 69 (radius: 5) [03:33:13 -6532.168972] SLOW spr round 70 (radius: 5) [03:33:28 -6532.167630] SLOW spr round 71 (radius: 10) [03:33:42 -6532.166703] SLOW spr round 72 (radius: 15) [03:34:01 -6532.165822] SLOW spr round 73 (radius: 20) [03:34:22 -6531.909501] SLOW spr round 74 (radius: 5) [03:34:39 -6531.909462] SLOW spr round 75 (radius: 10) [03:34:55 -6531.909462] SLOW spr round 76 (radius: 15) [03:35:12 -6531.909462] SLOW spr round 77 (radius: 20) [03:35:34 -6531.909462] SLOW spr round 78 (radius: 25) [03:35:57 -6530.866299] SLOW spr round 79 (radius: 5) [03:36:15 -6507.018884] SLOW spr round 80 (radius: 5) [03:36:31 -6505.700569] SLOW spr round 81 (radius: 5) [03:36:45 -6503.027972] SLOW spr round 82 (radius: 5) [03:36:59 -6503.027093] SLOW spr round 83 (radius: 10) [03:37:13 -6503.027072] SLOW spr round 84 (radius: 15) [03:37:32 -6503.027072] SLOW spr round 85 (radius: 20) [03:37:53 -6503.027072] SLOW spr round 86 (radius: 25) [03:38:15 -6497.970007] SLOW spr round 87 (radius: 5) [03:38:33 -6468.330768] SLOW spr round 88 (radius: 5) [03:38:49 -6468.330768] SLOW spr round 89 (radius: 10) [03:39:03 -6468.330768] SLOW spr round 90 (radius: 15) [03:39:21 -6468.330768] SLOW spr round 91 (radius: 20) [03:39:42 -6468.330768] SLOW spr round 92 (radius: 25) [03:40:04 -6468.330768] Model parameter optimization (eps = 0.100000) [03:40:07] ML tree search #13, logLikelihood: -6467.543027 [03:40:07 -17587.935911] Initial branch length optimization [03:40:07 -14682.308312] Model parameter optimization (eps = 10.000000) [03:40:12 -14551.453623] AUTODETECT spr round 1 (radius: 5) [03:40:24 -11276.638859] AUTODETECT spr round 2 (radius: 10) [03:40:37 -9009.318681] AUTODETECT spr round 3 (radius: 15) [03:40:52 -8137.611319] AUTODETECT spr round 4 (radius: 20) [03:41:08 -7864.862613] AUTODETECT spr round 5 (radius: 25) [03:41:25 -7631.805312] SPR radius for FAST iterations: 25 (autodetect) [03:41:25 -7631.805312] Model parameter optimization (eps = 3.000000) [03:41:30 -7615.984367] FAST spr round 1 (radius: 25) [03:41:44 -6865.248889] FAST spr round 2 (radius: 25) [03:41:56 -6799.051432] FAST spr round 3 (radius: 25) [03:42:09 -6760.886327] FAST spr round 4 (radius: 25) [03:42:21 -6748.215954] FAST spr round 5 (radius: 25) [03:42:32 -6748.215937] Model parameter optimization (eps = 1.000000) [03:42:34 -6748.112551] SLOW spr round 1 (radius: 5) [03:42:48 -6745.062245] SLOW spr round 2 (radius: 5) [03:43:03 -6741.372107] SLOW spr round 3 (radius: 5) [03:43:17 -6740.562941] SLOW spr round 4 (radius: 5) [03:43:30 -6740.562881] SLOW spr round 5 (radius: 10) [03:43:44 -6740.562876] SLOW spr round 6 (radius: 15) [03:44:07 -6679.595439] SLOW spr round 7 (radius: 5) [03:44:24 -6672.948639] SLOW spr round 8 (radius: 5) [03:44:40 -6672.537931] SLOW spr round 9 (radius: 5) [03:44:54 -6672.537891] SLOW spr round 10 (radius: 10) [03:45:08 -6672.537890] SLOW spr round 11 (radius: 15) [03:45:29 -6672.537890] SLOW spr round 12 (radius: 20) [03:45:53 -6575.539677] SLOW spr round 13 (radius: 5) [03:46:11 -6496.488057] SLOW spr round 14 (radius: 5) [03:46:27 -6475.714126] SLOW spr round 15 (radius: 5) [03:46:42 -6475.665271] SLOW spr round 16 (radius: 10) [03:46:56 -6473.332148] SLOW spr round 17 (radius: 5) [03:47:13 -6473.331683] SLOW spr round 18 (radius: 10) [03:47:29 -6469.542569] SLOW spr round 19 (radius: 5) [03:47:46 -6469.542264] SLOW spr round 20 (radius: 10) [03:48:01 -6467.288145] SLOW spr round 21 (radius: 5) [03:48:17 -6467.288129] SLOW spr round 22 (radius: 10) [03:48:33 -6467.288129] SLOW spr round 23 (radius: 15) [03:48:52 -6461.706256] SLOW spr round 24 (radius: 5) [03:49:10 -6461.699107] SLOW spr round 25 (radius: 10) [03:49:26 -6461.327563] SLOW spr round 26 (radius: 5) [03:49:42 -6461.327539] SLOW spr round 27 (radius: 10) [03:49:57 -6461.327538] SLOW spr round 28 (radius: 15) [03:50:17 -6461.327538] SLOW spr round 29 (radius: 20) [03:50:39 -6460.451346] SLOW spr round 30 (radius: 5) [03:50:57 -6456.779660] SLOW spr round 31 (radius: 5) [03:51:13 -6456.726678] SLOW spr round 32 (radius: 10) [03:51:27 -6456.726643] SLOW spr round 33 (radius: 15) [03:51:48 -6454.829201] SLOW spr round 34 (radius: 5) [03:52:05 -6454.829189] SLOW spr round 35 (radius: 10) [03:52:21 -6454.829184] SLOW spr round 36 (radius: 15) [03:52:40 -6454.829180] SLOW spr round 37 (radius: 20) [03:53:03 -6454.829176] SLOW spr round 38 (radius: 25) [03:53:25 -6452.237090] SLOW spr round 39 (radius: 5) [03:53:43 -6452.237080] SLOW spr round 40 (radius: 10) [03:54:00 -6452.237077] SLOW spr round 41 (radius: 15) [03:54:19 -6452.237074] SLOW spr round 42 (radius: 20) [03:54:42 -6452.237072] SLOW spr round 43 (radius: 25) [03:55:04 -6452.237070] Model parameter optimization (eps = 0.100000) [03:55:06] ML tree search #14, logLikelihood: -6452.112411 [03:55:06 -17606.924281] Initial branch length optimization [03:55:06 -14546.442816] Model parameter optimization (eps = 10.000000) [03:55:10 -14464.525415] AUTODETECT spr round 1 (radius: 5) [03:55:22 -11343.838755] AUTODETECT spr round 2 (radius: 10) [03:55:35 -9387.594828] AUTODETECT spr round 3 (radius: 15) [03:55:51 -8171.162650] AUTODETECT spr round 4 (radius: 20) [03:56:09 -7715.206731] AUTODETECT spr round 5 (radius: 25) [03:56:28 -7499.984885] SPR radius for FAST iterations: 25 (autodetect) [03:56:28 -7499.984885] Model parameter optimization (eps = 3.000000) [03:56:31 -7485.550838] FAST spr round 1 (radius: 25) [03:56:46 -6657.130285] FAST spr round 2 (radius: 25) [03:56:58 -6610.372492] FAST spr round 3 (radius: 25) [03:57:10 -6607.817262] FAST spr round 4 (radius: 25) [03:57:22 -6607.795121] Model parameter optimization (eps = 1.000000) [03:57:24 -6607.474799] SLOW spr round 1 (radius: 5) [03:57:39 -6607.187955] SLOW spr round 2 (radius: 5) [03:57:53 -6607.185652] SLOW spr round 3 (radius: 10) [03:58:07 -6601.461145] SLOW spr round 4 (radius: 5) [03:58:24 -6601.381218] SLOW spr round 5 (radius: 10) [03:58:39 -6598.486942] SLOW spr round 6 (radius: 5) [03:58:55 -6595.388930] SLOW spr round 7 (radius: 5) [03:59:10 -6595.388926] SLOW spr round 8 (radius: 10) [03:59:24 -6594.239357] SLOW spr round 9 (radius: 5) [03:59:41 -6594.239357] SLOW spr round 10 (radius: 10) [03:59:56 -6594.239357] SLOW spr round 11 (radius: 15) [04:00:14 -6588.222252] SLOW spr round 12 (radius: 5) [04:00:31 -6587.782009] SLOW spr round 13 (radius: 5) [04:00:46 -6587.096742] SLOW spr round 14 (radius: 5) [04:01:00 -6586.414587] SLOW spr round 15 (radius: 5) [04:01:14 -6586.379774] SLOW spr round 16 (radius: 10) [04:01:27 -6586.379750] SLOW spr round 17 (radius: 15) [04:01:47 -6580.501606] SLOW spr round 18 (radius: 5) [04:02:04 -6576.824882] SLOW spr round 19 (radius: 5) [04:02:20 -6576.824571] SLOW spr round 20 (radius: 10) [04:02:34 -6576.824568] SLOW spr round 21 (radius: 15) [04:02:53 -6576.824568] SLOW spr round 22 (radius: 20) [04:03:13 -6549.328199] SLOW spr round 23 (radius: 5) [04:03:30 -6546.975746] SLOW spr round 24 (radius: 5) [04:03:47 -6545.866233] SLOW spr round 25 (radius: 5) [04:04:01 -6545.866211] SLOW spr round 26 (radius: 10) [04:04:15 -6545.866209] SLOW spr round 27 (radius: 15) [04:04:35 -6545.866209] SLOW spr round 28 (radius: 20) [04:04:54 -6543.545298] SLOW spr round 29 (radius: 5) [04:05:12 -6543.545162] SLOW spr round 30 (radius: 10) [04:05:28 -6541.524997] SLOW spr round 31 (radius: 5) [04:05:44 -6540.011168] SLOW spr round 32 (radius: 5) [04:05:58 -6540.011165] SLOW spr round 33 (radius: 10) [04:06:13 -6540.011164] SLOW spr round 34 (radius: 15) [04:06:32 -6540.011164] SLOW spr round 35 (radius: 20) [04:06:51 -6539.153482] SLOW spr round 36 (radius: 5) [04:07:09 -6539.153308] SLOW spr round 37 (radius: 10) [04:07:25 -6539.153294] SLOW spr round 38 (radius: 15) [04:07:43 -6539.153291] SLOW spr round 39 (radius: 20) [04:08:03 -6539.153290] SLOW spr round 40 (radius: 25) [04:08:21 -6536.714638] SLOW spr round 41 (radius: 5) [04:08:39 -6535.731126] SLOW spr round 42 (radius: 5) [04:08:55 -6532.009284] SLOW spr round 43 (radius: 5) [04:09:09 -6525.710268] SLOW spr round 44 (radius: 5) [04:09:24 -6487.619296] SLOW spr round 45 (radius: 5) [04:09:38 -6487.619221] SLOW spr round 46 (radius: 10) [04:09:51 -6487.619221] SLOW spr round 47 (radius: 15) [04:10:11 -6487.619221] SLOW spr round 48 (radius: 20) [04:10:30 -6487.619221] SLOW spr round 49 (radius: 25) [04:10:49 -6487.619221] Model parameter optimization (eps = 0.100000) [04:10:53] ML tree search #15, logLikelihood: -6486.861377 [04:10:53 -17699.692266] Initial branch length optimization [04:10:54 -14648.400083] Model parameter optimization (eps = 10.000000) [04:10:58 -14511.235108] AUTODETECT spr round 1 (radius: 5) [04:11:09 -11024.909257] AUTODETECT spr round 2 (radius: 10) [04:11:23 -9328.149980] AUTODETECT spr round 3 (radius: 15) [04:11:39 -8127.425602] AUTODETECT spr round 4 (radius: 20) [04:11:56 -7832.865114] AUTODETECT spr round 5 (radius: 25) [04:12:14 -7667.570095] SPR radius for FAST iterations: 25 (autodetect) [04:12:14 -7667.570095] Model parameter optimization (eps = 3.000000) [04:12:18 -7648.783432] FAST spr round 1 (radius: 25) [04:12:33 -6896.187985] FAST spr round 2 (radius: 25) [04:12:46 -6775.042531] FAST spr round 3 (radius: 25) [04:12:58 -6722.820985] FAST spr round 4 (radius: 25) [04:13:11 -6700.392818] FAST spr round 5 (radius: 25) [04:13:23 -6692.165857] FAST spr round 6 (radius: 25) [04:13:35 -6687.004098] FAST spr round 7 (radius: 25) [04:13:47 -6686.818813] FAST spr round 8 (radius: 25) [04:13:59 -6686.618181] FAST spr round 9 (radius: 25) [04:14:10 -6686.618160] Model parameter optimization (eps = 1.000000) [04:14:13 -6683.949393] SLOW spr round 1 (radius: 5) [04:14:27 -6682.913528] SLOW spr round 2 (radius: 5) [04:14:41 -6680.986332] SLOW spr round 3 (radius: 5) [04:14:55 -6677.151863] SLOW spr round 4 (radius: 5) [04:15:08 -6677.151088] SLOW spr round 5 (radius: 10) [04:15:22 -6643.360727] SLOW spr round 6 (radius: 5) [04:15:40 -6616.716929] SLOW spr round 7 (radius: 5) [04:15:55 -6614.897130] SLOW spr round 8 (radius: 5) [04:16:09 -6604.218463] SLOW spr round 9 (radius: 5) [04:16:22 -6601.834708] SLOW spr round 10 (radius: 5) [04:16:36 -6601.833945] SLOW spr round 11 (radius: 10) [04:16:49 -6599.654178] SLOW spr round 12 (radius: 5) [04:17:06 -6599.653501] SLOW spr round 13 (radius: 10) [04:17:21 -6598.337708] SLOW spr round 14 (radius: 5) [04:17:37 -6598.306728] SLOW spr round 15 (radius: 10) [04:17:52 -6597.849802] SLOW spr round 16 (radius: 5) [04:18:08 -6597.849800] SLOW spr round 17 (radius: 10) [04:18:23 -6597.849799] SLOW spr round 18 (radius: 15) [04:18:42 -6578.108675] SLOW spr round 19 (radius: 5) [04:19:00 -6535.603244] SLOW spr round 20 (radius: 5) [04:19:15 -6534.910416] SLOW spr round 21 (radius: 5) [04:19:29 -6534.910272] SLOW spr round 22 (radius: 10) [04:19:43 -6534.910248] SLOW spr round 23 (radius: 15) [04:20:02 -6533.673048] SLOW spr round 24 (radius: 5) [04:20:19 -6533.672775] SLOW spr round 25 (radius: 10) [04:20:35 -6533.672775] SLOW spr round 26 (radius: 15) [04:20:53 -6533.672775] SLOW spr round 27 (radius: 20) [04:21:15 -6531.185609] SLOW spr round 28 (radius: 5) [04:21:32 -6531.184981] SLOW spr round 29 (radius: 10) [04:21:48 -6531.184876] SLOW spr round 30 (radius: 15) [04:22:06 -6531.068521] SLOW spr round 31 (radius: 5) [04:22:23 -6531.068164] SLOW spr round 32 (radius: 10) [04:22:39 -6531.068124] SLOW spr round 33 (radius: 15) [04:22:57 -6531.068092] SLOW spr round 34 (radius: 20) [04:23:19 -6520.947968] SLOW spr round 35 (radius: 5) [04:23:36 -6520.947839] SLOW spr round 36 (radius: 10) [04:23:52 -6520.947837] SLOW spr round 37 (radius: 15) [04:24:10 -6520.947837] SLOW spr round 38 (radius: 20) [04:24:30 -6520.947837] SLOW spr round 39 (radius: 25) [04:24:51 -6511.484323] SLOW spr round 40 (radius: 5) [04:25:10 -6446.711859] SLOW spr round 41 (radius: 5) [04:25:26 -6440.501645] SLOW spr round 42 (radius: 5) [04:25:40 -6440.501598] SLOW spr round 43 (radius: 10) [04:25:53 -6440.501598] SLOW spr round 44 (radius: 15) [04:26:12 -6440.501598] SLOW spr round 45 (radius: 20) [04:26:32 -6440.501598] SLOW spr round 46 (radius: 25) [04:26:52 -6439.806470] SLOW spr round 47 (radius: 5) [04:27:09 -6439.605600] SLOW spr round 48 (radius: 5) [04:27:25 -6439.602550] SLOW spr round 49 (radius: 10) [04:27:39 -6439.602550] SLOW spr round 50 (radius: 15) [04:27:57 -6439.602550] SLOW spr round 51 (radius: 20) [04:28:17 -6439.602550] SLOW spr round 52 (radius: 25) [04:28:37 -6439.602550] Model parameter optimization (eps = 0.100000) [04:28:40] ML tree search #16, logLikelihood: -6439.341565 [04:28:40 -17624.625325] Initial branch length optimization [04:28:40 -14488.519284] Model parameter optimization (eps = 10.000000) [04:28:45 -14401.249984] AUTODETECT spr round 1 (radius: 5) [04:28:56 -11216.432917] AUTODETECT spr round 2 (radius: 10) [04:29:10 -9391.937930] AUTODETECT spr round 3 (radius: 15) [04:29:24 -8539.175503] AUTODETECT spr round 4 (radius: 20) [04:29:40 -8213.197941] AUTODETECT spr round 5 (radius: 25) [04:29:55 -8114.335562] SPR radius for FAST iterations: 25 (autodetect) [04:29:55 -8114.335562] Model parameter optimization (eps = 3.000000) [04:30:00 -8107.150902] FAST spr round 1 (radius: 25) [04:30:15 -7139.849662] FAST spr round 2 (radius: 25) [04:30:28 -7034.422617] FAST spr round 3 (radius: 25) [04:30:40 -7028.676721] FAST spr round 4 (radius: 25) [04:30:52 -7028.344577] FAST spr round 5 (radius: 25) [04:31:04 -7028.343768] Model parameter optimization (eps = 1.000000) [04:31:08 -7024.432311] SLOW spr round 1 (radius: 5) [04:31:23 -7021.777910] SLOW spr round 2 (radius: 5) [04:31:37 -7017.805172] SLOW spr round 3 (radius: 5) [04:31:51 -7017.802492] SLOW spr round 4 (radius: 10) [04:32:05 -7015.516519] SLOW spr round 5 (radius: 5) [04:32:22 -7015.516511] SLOW spr round 6 (radius: 10) [04:32:37 -7014.295488] SLOW spr round 7 (radius: 5) [04:32:54 -7014.295167] SLOW spr round 8 (radius: 10) [04:33:09 -7014.295163] SLOW spr round 9 (radius: 15) [04:33:28 -7000.727412] SLOW spr round 10 (radius: 5) [04:33:45 -6992.559850] SLOW spr round 11 (radius: 5) [04:34:01 -6992.449347] SLOW spr round 12 (radius: 5) [04:34:15 -6992.449143] SLOW spr round 13 (radius: 10) [04:34:29 -6991.378619] SLOW spr round 14 (radius: 5) [04:34:46 -6991.345230] SLOW spr round 15 (radius: 10) [04:35:01 -6991.343470] SLOW spr round 16 (radius: 15) [04:35:19 -6990.178723] SLOW spr round 17 (radius: 5) [04:35:37 -6990.169247] SLOW spr round 18 (radius: 10) [04:35:52 -6990.169246] SLOW spr round 19 (radius: 15) [04:36:10 -6990.169245] SLOW spr round 20 (radius: 20) [04:36:31 -6982.985590] SLOW spr round 21 (radius: 5) [04:36:49 -6982.970008] SLOW spr round 22 (radius: 10) [04:37:04 -6982.969066] SLOW spr round 23 (radius: 15) [04:37:22 -6982.968121] SLOW spr round 24 (radius: 20) [04:37:43 -6982.012190] SLOW spr round 25 (radius: 5) [04:38:00 -6982.011590] SLOW spr round 26 (radius: 10) [04:38:16 -6982.011373] SLOW spr round 27 (radius: 15) [04:38:34 -6982.011309] SLOW spr round 28 (radius: 20) [04:38:54 -6982.011285] SLOW spr round 29 (radius: 25) [04:39:16 -6900.833137] SLOW spr round 30 (radius: 5) [04:39:34 -6809.714467] SLOW spr round 31 (radius: 5) [04:39:50 -6804.647905] SLOW spr round 32 (radius: 5) [04:40:05 -6804.644789] SLOW spr round 33 (radius: 10) [04:40:19 -6803.517525] SLOW spr round 34 (radius: 5) [04:40:36 -6802.014710] SLOW spr round 35 (radius: 5) [04:40:51 -6802.014671] SLOW spr round 36 (radius: 10) [04:41:05 -6802.014664] SLOW spr round 37 (radius: 15) [04:41:23 -6802.014663] SLOW spr round 38 (radius: 20) [04:41:43 -6802.014663] SLOW spr round 39 (radius: 25) [04:42:04 -6792.766281] SLOW spr round 40 (radius: 5) [04:42:21 -6792.766281] SLOW spr round 41 (radius: 10) [04:42:37 -6792.766281] SLOW spr round 42 (radius: 15) [04:42:54 -6792.766281] SLOW spr round 43 (radius: 20) [04:43:13 -6792.766281] SLOW spr round 44 (radius: 25) [04:43:33 -6792.002099] SLOW spr round 45 (radius: 5) [04:43:51 -6791.999482] SLOW spr round 46 (radius: 10) [04:44:07 -6791.999437] SLOW spr round 47 (radius: 15) [04:44:24 -6791.999436] SLOW spr round 48 (radius: 20) [04:44:44 -6791.999436] SLOW spr round 49 (radius: 25) [04:45:04 -6791.999436] Model parameter optimization (eps = 0.100000) [04:45:06] ML tree search #17, logLikelihood: -6791.874871 [04:45:06 -17754.455224] Initial branch length optimization [04:45:06 -14774.416640] Model parameter optimization (eps = 10.000000) [04:45:13 -14652.260841] AUTODETECT spr round 1 (radius: 5) [04:45:24 -11125.395998] AUTODETECT spr round 2 (radius: 10) [04:45:38 -9591.640766] AUTODETECT spr round 3 (radius: 15) [04:45:54 -8377.977508] AUTODETECT spr round 4 (radius: 20) [04:46:10 -8036.336019] AUTODETECT spr round 5 (radius: 25) [04:46:26 -7923.791430] SPR radius for FAST iterations: 25 (autodetect) [04:46:26 -7923.791430] Model parameter optimization (eps = 3.000000) [04:46:31 -7911.258169] FAST spr round 1 (radius: 25) [04:46:45 -7234.147833] FAST spr round 2 (radius: 25) [04:46:57 -7131.859448] FAST spr round 3 (radius: 25) [04:47:10 -7126.746008] FAST spr round 4 (radius: 25) [04:47:21 -7125.456246] FAST spr round 5 (radius: 25) [04:47:33 -7125.454933] Model parameter optimization (eps = 1.000000) [04:47:34 -7125.297892] SLOW spr round 1 (radius: 5) [04:47:49 -7124.668627] SLOW spr round 2 (radius: 5) [04:48:03 -7124.666916] SLOW spr round 3 (radius: 10) [04:48:17 -7122.360302] SLOW spr round 4 (radius: 5) [04:48:34 -7122.360209] SLOW spr round 5 (radius: 10) [04:48:49 -7110.976722] SLOW spr round 6 (radius: 5) [04:49:05 -7107.131802] SLOW spr round 7 (radius: 5) [04:49:20 -7107.131800] SLOW spr round 8 (radius: 10) [04:49:34 -7107.131799] SLOW spr round 9 (radius: 15) [04:49:52 -7095.969050] SLOW spr round 10 (radius: 5) [04:50:10 -7091.551914] SLOW spr round 11 (radius: 5) [04:50:25 -7091.551779] SLOW spr round 12 (radius: 10) [04:50:39 -7091.551778] SLOW spr round 13 (radius: 15) [04:50:57 -7091.456732] SLOW spr round 14 (radius: 20) [04:51:17 -7089.757149] SLOW spr round 15 (radius: 5) [04:51:34 -7089.238365] SLOW spr round 16 (radius: 5) [04:51:50 -7089.237550] SLOW spr round 17 (radius: 10) [04:52:04 -7089.237328] SLOW spr round 18 (radius: 15) [04:52:21 -7089.237264] SLOW spr round 19 (radius: 20) [04:52:41 -7088.137544] SLOW spr round 20 (radius: 5) [04:52:58 -7086.599875] SLOW spr round 21 (radius: 5) [04:53:14 -7086.599711] SLOW spr round 22 (radius: 10) [04:53:28 -7086.599711] SLOW spr round 23 (radius: 15) [04:53:45 -7086.479259] SLOW spr round 24 (radius: 5) [04:54:03 -7086.479083] SLOW spr round 25 (radius: 10) [04:54:17 -7086.479045] SLOW spr round 26 (radius: 15) [04:54:34 -7086.479045] SLOW spr round 27 (radius: 20) [04:54:54 -7083.305085] SLOW spr round 28 (radius: 5) [04:55:11 -7083.273566] SLOW spr round 29 (radius: 10) [04:55:26 -7083.273300] SLOW spr round 30 (radius: 15) [04:55:43 -7083.273300] SLOW spr round 31 (radius: 20) [04:56:03 -7083.033765] SLOW spr round 32 (radius: 5) [04:56:20 -7083.033343] SLOW spr round 33 (radius: 10) [04:56:35 -7083.033323] SLOW spr round 34 (radius: 15) [04:56:52 -7083.033322] SLOW spr round 35 (radius: 20) [04:57:11 -7083.033321] SLOW spr round 36 (radius: 25) [04:57:31 -7082.355067] SLOW spr round 37 (radius: 5) [04:57:48 -7080.616752] SLOW spr round 38 (radius: 5) [04:58:04 -7078.713902] SLOW spr round 39 (radius: 5) [04:58:18 -7078.713880] SLOW spr round 40 (radius: 10) [04:58:32 -7078.713880] SLOW spr round 41 (radius: 15) [04:58:50 -7078.713880] SLOW spr round 42 (radius: 20) [04:59:10 -7036.745292] SLOW spr round 43 (radius: 5) [04:59:29 -7005.004171] SLOW spr round 44 (radius: 5) [04:59:44 -7005.004168] SLOW spr round 45 (radius: 10) [04:59:58 -7005.004168] SLOW spr round 46 (radius: 15) [05:00:16 -7005.004168] SLOW spr round 47 (radius: 20) [05:00:37 -6991.145530] SLOW spr round 48 (radius: 5) [05:00:55 -6991.039870] SLOW spr round 49 (radius: 5) [05:01:11 -6991.038654] SLOW spr round 50 (radius: 10) [05:01:25 -6990.858258] SLOW spr round 51 (radius: 5) [05:01:42 -6990.857931] SLOW spr round 52 (radius: 10) [05:01:56 -6990.857918] SLOW spr round 53 (radius: 15) [05:02:14 -6990.857917] SLOW spr round 54 (radius: 20) [05:02:35 -6989.744054] SLOW spr round 55 (radius: 5) [05:02:53 -6988.588268] SLOW spr round 56 (radius: 5) [05:03:08 -6988.587976] SLOW spr round 57 (radius: 10) [05:03:22 -6988.587972] SLOW spr round 58 (radius: 15) [05:03:40 -6988.384565] SLOW spr round 59 (radius: 5) [05:03:57 -6987.628865] SLOW spr round 60 (radius: 5) [05:04:13 -6987.627511] SLOW spr round 61 (radius: 10) [05:04:27 -6987.627429] SLOW spr round 62 (radius: 15) [05:04:44 -6987.627424] SLOW spr round 63 (radius: 20) [05:05:05 -6987.627424] SLOW spr round 64 (radius: 25) [05:05:25 -6985.817971] SLOW spr round 65 (radius: 5) [05:05:43 -6985.816723] SLOW spr round 66 (radius: 10) [05:05:59 -6985.816402] SLOW spr round 67 (radius: 15) [05:06:16 -6985.816353] SLOW spr round 68 (radius: 20) [05:06:37 -6985.816348] SLOW spr round 69 (radius: 25) [05:06:58 -6982.592478] SLOW spr round 70 (radius: 5) [05:07:15 -6982.592460] SLOW spr round 71 (radius: 10) [05:07:31 -6981.020052] SLOW spr round 72 (radius: 5) [05:07:47 -6981.020048] SLOW spr round 73 (radius: 10) [05:08:02 -6981.020048] SLOW spr round 74 (radius: 15) [05:08:19 -6981.020048] SLOW spr round 75 (radius: 20) [05:08:40 -6981.020048] SLOW spr round 76 (radius: 25) [05:09:01 -6981.020048] Model parameter optimization (eps = 0.100000) [05:09:03] ML tree search #18, logLikelihood: -6980.553558 [05:09:03 -17437.730542] Initial branch length optimization [05:09:03 -14478.667993] Model parameter optimization (eps = 10.000000) [05:09:08 -14365.550006] AUTODETECT spr round 1 (radius: 5) [05:09:20 -11381.316538] AUTODETECT spr round 2 (radius: 10) [05:09:33 -9748.887751] AUTODETECT spr round 3 (radius: 15) [05:09:48 -8615.808941] AUTODETECT spr round 4 (radius: 20) [05:10:04 -8024.099289] AUTODETECT spr round 5 (radius: 25) [05:10:21 -7662.664701] SPR radius for FAST iterations: 25 (autodetect) [05:10:21 -7662.664701] Model parameter optimization (eps = 3.000000) [05:10:26 -7657.290283] FAST spr round 1 (radius: 25) [05:10:40 -6904.427217] FAST spr round 2 (radius: 25) [05:10:53 -6844.657894] FAST spr round 3 (radius: 25) [05:11:06 -6831.820935] FAST spr round 4 (radius: 25) [05:11:18 -6831.314296] FAST spr round 5 (radius: 25) [05:11:29 -6831.314151] Model parameter optimization (eps = 1.000000) [05:11:32 -6830.192436] SLOW spr round 1 (radius: 5) [05:11:47 -6826.983850] SLOW spr round 2 (radius: 5) [05:12:01 -6826.906055] SLOW spr round 3 (radius: 10) [05:12:15 -6813.011554] SLOW spr round 4 (radius: 5) [05:12:33 -6808.576611] SLOW spr round 5 (radius: 5) [05:12:48 -6808.355785] SLOW spr round 6 (radius: 5) [05:13:03 -6808.355019] SLOW spr round 7 (radius: 10) [05:13:17 -6804.574732] SLOW spr round 8 (radius: 5) [05:13:34 -6804.240293] SLOW spr round 9 (radius: 5) [05:13:49 -6804.240275] SLOW spr round 10 (radius: 10) [05:14:04 -6799.733263] SLOW spr round 11 (radius: 5) [05:14:21 -6799.564827] SLOW spr round 12 (radius: 5) [05:14:36 -6799.564527] SLOW spr round 13 (radius: 10) [05:14:51 -6799.225142] SLOW spr round 14 (radius: 5) [05:15:08 -6799.223212] SLOW spr round 15 (radius: 10) [05:15:23 -6799.222463] SLOW spr round 16 (radius: 15) [05:15:42 -6790.210755] SLOW spr round 17 (radius: 5) [05:15:59 -6788.397195] SLOW spr round 18 (radius: 5) [05:16:15 -6786.489112] SLOW spr round 19 (radius: 5) [05:16:30 -6785.403139] SLOW spr round 20 (radius: 5) [05:16:44 -6785.403021] SLOW spr round 21 (radius: 10) [05:16:58 -6785.403021] SLOW spr round 22 (radius: 15) [05:17:17 -6785.403021] SLOW spr round 23 (radius: 20) [05:17:37 -6774.453950] SLOW spr round 24 (radius: 5) [05:17:55 -6772.848176] SLOW spr round 25 (radius: 5) [05:18:11 -6765.164083] SLOW spr round 26 (radius: 5) [05:18:26 -6765.159592] SLOW spr round 27 (radius: 10) [05:18:40 -6763.208590] SLOW spr round 28 (radius: 5) [05:18:57 -6763.208580] SLOW spr round 29 (radius: 10) [05:19:12 -6763.208578] SLOW spr round 30 (radius: 15) [05:19:29 -6762.715652] SLOW spr round 31 (radius: 5) [05:19:47 -6762.710916] SLOW spr round 32 (radius: 10) [05:20:02 -6762.709917] SLOW spr round 33 (radius: 15) [05:20:20 -6762.709741] SLOW spr round 34 (radius: 20) [05:20:39 -6762.359071] SLOW spr round 35 (radius: 5) [05:20:57 -6761.923096] SLOW spr round 36 (radius: 5) [05:21:12 -6761.922102] SLOW spr round 37 (radius: 10) [05:21:27 -6761.922052] SLOW spr round 38 (radius: 15) [05:21:45 -6761.922049] SLOW spr round 39 (radius: 20) [05:22:04 -6761.922049] SLOW spr round 40 (radius: 25) [05:22:24 -6726.290278] SLOW spr round 41 (radius: 5) [05:22:43 -6696.301244] SLOW spr round 42 (radius: 5) [05:22:58 -6696.301186] SLOW spr round 43 (radius: 10) [05:23:13 -6696.301183] SLOW spr round 44 (radius: 15) [05:23:31 -6695.407726] SLOW spr round 45 (radius: 5) [05:23:48 -6695.407710] SLOW spr round 46 (radius: 10) [05:24:03 -6695.407710] SLOW spr round 47 (radius: 15) [05:24:21 -6695.326490] SLOW spr round 48 (radius: 20) [05:24:40 -6695.326294] SLOW spr round 49 (radius: 25) [05:25:00 -6692.974963] SLOW spr round 50 (radius: 5) [05:25:18 -6692.974948] SLOW spr round 51 (radius: 10) [05:25:33 -6692.974944] SLOW spr round 52 (radius: 15) [05:25:51 -6692.974944] SLOW spr round 53 (radius: 20) [05:26:10 -6692.974944] SLOW spr round 54 (radius: 25) [05:26:30 -6690.856215] SLOW spr round 55 (radius: 5) [05:26:48 -6688.489098] SLOW spr round 56 (radius: 5) [05:27:04 -6685.886331] SLOW spr round 57 (radius: 5) [05:27:18 -6685.886323] SLOW spr round 58 (radius: 10) [05:27:32 -6685.886322] SLOW spr round 59 (radius: 15) [05:27:50 -6685.886322] SLOW spr round 60 (radius: 20) [05:28:09 -6685.886322] SLOW spr round 61 (radius: 25) [05:28:29 -6685.886322] Model parameter optimization (eps = 0.100000) [05:28:31] ML tree search #19, logLikelihood: -6685.569644 [05:28:31 -17596.318806] Initial branch length optimization [05:28:31 -14623.860401] Model parameter optimization (eps = 10.000000) [05:28:36 -14479.423443] AUTODETECT spr round 1 (radius: 5) [05:28:48 -11331.627319] AUTODETECT spr round 2 (radius: 10) [05:29:02 -9275.107088] AUTODETECT spr round 3 (radius: 15) [05:29:17 -8165.329913] AUTODETECT spr round 4 (radius: 20) [05:29:34 -7514.332139] AUTODETECT spr round 5 (radius: 25) [05:29:55 -7298.793913] SPR radius for FAST iterations: 25 (autodetect) [05:29:55 -7298.793913] Model parameter optimization (eps = 3.000000) [05:29:58 -7292.787623] FAST spr round 1 (radius: 25) [05:30:12 -6642.638949] FAST spr round 2 (radius: 25) [05:30:25 -6540.971715] FAST spr round 3 (radius: 25) [05:30:38 -6534.345159] FAST spr round 4 (radius: 25) [05:30:50 -6534.210127] FAST spr round 5 (radius: 25) [05:31:02 -6534.209613] Model parameter optimization (eps = 1.000000) [05:31:05 -6532.973368] SLOW spr round 1 (radius: 5) [05:31:19 -6530.134352] SLOW spr round 2 (radius: 5) [05:31:33 -6530.055347] SLOW spr round 3 (radius: 10) [05:31:47 -6530.054982] SLOW spr round 4 (radius: 15) [05:32:06 -6518.826025] SLOW spr round 5 (radius: 5) [05:32:23 -6516.694360] SLOW spr round 6 (radius: 5) [05:32:38 -6516.694302] SLOW spr round 7 (radius: 10) [05:32:53 -6515.718605] SLOW spr round 8 (radius: 5) [05:33:09 -6515.718345] SLOW spr round 9 (radius: 10) [05:33:24 -6513.963371] SLOW spr round 10 (radius: 5) [05:33:40 -6513.963347] SLOW spr round 11 (radius: 10) [05:33:55 -6513.963327] SLOW spr round 12 (radius: 15) [05:34:13 -6513.610170] SLOW spr round 13 (radius: 5) [05:34:30 -6511.908445] SLOW spr round 14 (radius: 5) [05:34:46 -6511.908237] SLOW spr round 15 (radius: 10) [05:35:00 -6511.908195] SLOW spr round 16 (radius: 15) [05:35:18 -6511.585305] SLOW spr round 17 (radius: 5) [05:35:35 -6511.584684] SLOW spr round 18 (radius: 10) [05:35:50 -6511.584650] SLOW spr round 19 (radius: 15) [05:36:08 -6511.541002] SLOW spr round 20 (radius: 20) [05:36:29 -6510.044249] SLOW spr round 21 (radius: 5) [05:36:46 -6509.316297] SLOW spr round 22 (radius: 5) [05:37:01 -6509.316136] SLOW spr round 23 (radius: 10) [05:37:15 -6509.249178] SLOW spr round 24 (radius: 15) [05:37:34 -6509.249175] SLOW spr round 25 (radius: 20) [05:37:54 -6509.249174] SLOW spr round 26 (radius: 25) [05:38:16 -6508.218816] SLOW spr round 27 (radius: 5) [05:38:33 -6508.211383] SLOW spr round 28 (radius: 10) [05:38:49 -6508.207874] SLOW spr round 29 (radius: 15) [05:39:06 -6508.206242] SLOW spr round 30 (radius: 20) [05:39:27 -6508.205469] SLOW spr round 31 (radius: 25) [05:39:49 -6508.205101] Model parameter optimization (eps = 0.100000) [05:39:51] ML tree search #20, logLikelihood: -6507.562971 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.315811,0.559654) (0.263150,0.466464) (0.210487,1.272488) (0.210552,2.054897) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -6368.314168 AIC score: 14666.628336 / AICc score: 1879046.628336 / BIC score: 15578.011950 Free parameters (model + branch lengths): 965 WARNING: Number of free parameters (K=965) is larger than alignment size (n=19). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 1 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5TIE3/3_mltree/Q5TIE3.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5TIE3/3_mltree/Q5TIE3.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5TIE3/3_mltree/Q5TIE3.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5TIE3/3_mltree/Q5TIE3.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5TIE3/3_mltree/Q5TIE3.raxml.log Analysis started: 06-Jul-2021 14:00:48 / finished: 06-Jul-2021 19:40:40 Elapsed time: 20391.946 seconds Consumed energy: 1754.969 Wh (= 9 km in an electric car, or 44 km with an e-scooter!)