RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 01-Jul-2021 10:39:30 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TGS1/2_msa/Q5TGS1_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TGS1/3_mltree/Q5TGS1 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TGS1/2_msa/Q5TGS1_trimmed_msa.fasta [00:00:00] Loaded alignment with 696 taxa and 42 sites WARNING: Sequences tr_B4NS85_B4NS85_DROSI_7240 and sp_Q26263_DPN_DROME_7227 are exactly identical! WARNING: Sequences tr_B4NS85_B4NS85_DROSI_7240 and tr_B4J5U8_B4J5U8_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4NS85_B4NS85_DROSI_7240 and tr_B4HRM0_B4HRM0_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4NS85_B4NS85_DROSI_7240 and tr_Q292K4_Q292K4_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4NS85_B4NS85_DROSI_7240 and tr_B4MRF2_B4MRF2_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4NS85_B4NS85_DROSI_7240 and tr_B4GDB8_B4GDB8_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4NS85_B4NS85_DROSI_7240 and tr_B4LL80_B4LL80_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4NS85_B4NS85_DROSI_7240 and tr_B4KPG4_B4KPG4_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4NS85_B4NS85_DROSI_7240 and tr_A0A0L0CQG1_A0A0L0CQG1_LUCCU_7375 are exactly identical! WARNING: Sequences tr_B4NS85_B4NS85_DROSI_7240 and tr_A0A0M4EBJ0_A0A0M4EBJ0_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4NS85_B4NS85_DROSI_7240 and tr_A0A1W4VYS9_A0A1W4VYS9_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4QF85_B4QF85_DROSI_7240 and sp_Q7KM13_HEY_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QF85_B4QF85_DROSI_7240 and tr_B4HRH8_B4HRH8_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QF85_B4QF85_DROSI_7240 and tr_Q290X9_Q290X9_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4QF85_B4QF85_DROSI_7240 and tr_B4MPP7_B4MPP7_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4QF85_B4QF85_DROSI_7240 and tr_B3MGC7_B3MGC7_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4QF85_B4QF85_DROSI_7240 and tr_B4GB26_B4GB26_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4QF85_B4QF85_DROSI_7240 and tr_B4LJK4_B4LJK4_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4QF85_B4QF85_DROSI_7240 and tr_B4KQ76_B4KQ76_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4QF85_B4QF85_DROSI_7240 and tr_A0A0M4EIR0_A0A0M4EIR0_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4QF85_B4QF85_DROSI_7240 and tr_A0A1W4WBP2_A0A1W4WBP2_DROFC_30025 are exactly identical! WARNING: Sequences tr_E2AUS6_E2AUS6_CAMFO_104421 and tr_A0A158NNG5_A0A158NNG5_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2AUS6_E2AUS6_CAMFO_104421 and tr_F4X5A8_F4X5A8_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2AUS6_E2AUS6_CAMFO_104421 and tr_A0A151WWJ2_A0A151WWJ2_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2AUS6_E2AUS6_CAMFO_104421 and tr_A0A195DKM7_A0A195DKM7_9HYME_471704 are exactly identical! WARNING: Sequences tr_E2AUS6_E2AUS6_CAMFO_104421 and tr_A0A195F7P6_A0A195F7P6_9HYME_34720 are exactly identical! WARNING: Sequences tr_E2AUS6_E2AUS6_CAMFO_104421 and tr_A0A195D7G4_A0A195D7G4_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_Q9DF41_Q9DF41_DANRE_7955 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_H2LLF4_H2LLF4_ORYLA_8090 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_Q1L7T4_Q1L7T4_ORYLA_8090 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_H9G5B5_H9G5B5_ANOCA_28377 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_H9H763_H9H763_MONDO_13616 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A3B5RAS1_A0A3B5RAS1_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_M3ZQF2_M3ZQF2_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_I3J2A9_I3J2A9_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_I3J340_I3J340_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_I3JWY2_I3JWY2_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A3B5K9U5_A0A3B5K9U5_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A3B5KD18_A0A3B5KD18_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_K7G2Q2_K7G2Q2_PELSI_13735 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_H3DCH4_H3DCH4_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_H3DDP6_H3DDP6_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_G3NWL5_G3NWL5_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_G3P3Q8_G3P3Q8_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_G3PTY8_G3PTY8_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and sp_Q5PPM5_HES1_XENTR_8364 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and sp_Q6PBD4_HES4_XENTR_8364 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_H3BER9_H3BER9_LATCH_7897 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_U3JXP0_U3JXP0_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_U3JY93_U3JY93_FICAL_59894 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_U3IKE6_U3IKE6_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A3B1ISG6_A0A3B1ISG6_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_W5KYG4_W5KYG4_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_W5MC94_W5MC94_LEPOC_7918 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_W5MKD0_W5MKD0_LEPOC_7918 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A087YFC6_A0A087YFC6_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A096M037_A0A096M037_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A0P7UQF9_A0A0P7UQF9_9TELE_113540 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A0P7V0L0_A0A0P7V0L0_9TELE_113540 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A0P7V2Y5_A0A0P7V2Y5_9TELE_113540 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A0Q3LZD5_A0A0Q3LZD5_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A0Q3XBD2_A0A0Q3XBD2_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A091GG23_A0A091GG23_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A2I0M312_A0A2I0M312_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A093GZR7_A0A093GZR7_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A1S3MEH9_A0A1S3MEH9_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A1S3MPQ4_A0A1S3MPQ4_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A1S3R091_A0A1S3R091_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_B5X993_B5X993_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A1L8FLY0_A0A1L8FLY0_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A1L8G421_A0A1L8G421_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A1L8G9X1_A0A1L8G9X1_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A1U7RIU7_A0A1U7RIU7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A1V4K399_A0A1V4K399_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A1V4KNV9_A0A1V4KNV9_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A2I4AI77_A0A2I4AI77_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A060WW86_A0A060WW86_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A060XJU7_A0A060XJU7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A060Y933_A0A060Y933_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A060YBZ5_A0A060YBZ5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A060YMX7_A0A060YMX7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A218UIC5_A0A218UIC5_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A226N8R5_A0A226N8R5_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A226PUI9_A0A226PUI9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A2D0S020_A0A2D0S020_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A2D0SH69_A0A2D0SH69_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_W5UG01_W5UG01_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A2U9BJX0_A0A2U9BJX0_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A2U9BZ41_A0A2U9BZ41_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A2R8Q6M1_A0A2R8Q6M1_DANRE_7955 and tr_A0A2U9C369_A0A2U9C369_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A8E5M4_A8E5M4_DANRE_7955 and tr_Q7T3J0_Q7T3J0_DANRE_7955 are exactly identical! WARNING: Sequences tr_A0A1D5PNN3_A0A1D5PNN3_CHICK_9031 and tr_R4GHG2_R4GHG2_CHICK_9031 are exactly identical! WARNING: Sequences tr_E1BW65_E1BW65_CHICK_9031 and tr_A0A0Q3P579_A0A0Q3P579_AMAAE_12930 are exactly identical! WARNING: Sequences sp_O57337_HES1_CHICK_9031 and tr_Q6XLP9_Q6XLP9_CHICK_9031 are exactly identical! WARNING: Sequences sp_O57337_HES1_CHICK_9031 and tr_G1N6J0_G1N6J0_MELGA_9103 are exactly identical! WARNING: Sequences sp_O57337_HES1_CHICK_9031 and tr_A0A226N0C4_A0A226N0C4_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q5D212_Q5D212_CHICK_9031 and tr_K7F8E2_K7F8E2_PELSI_13735 are exactly identical! WARNING: Sequences tr_Q5D212_Q5D212_CHICK_9031 and tr_R0KB38_R0KB38_ANAPL_8839 are exactly identical! WARNING: Sequences tr_Q5D212_Q5D212_CHICK_9031 and tr_A0A091ISL0_A0A091ISL0_EGRGA_188379 are exactly identical! WARNING: Sequences tr_Q5D212_Q5D212_CHICK_9031 and tr_A0A091JFM2_A0A091JFM2_EGRGA_188379 are exactly identical! WARNING: Sequences tr_Q5D212_Q5D212_CHICK_9031 and tr_A0A091VVP9_A0A091VVP9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_Q5D212_Q5D212_CHICK_9031 and tr_A0A087QS71_A0A087QS71_APTFO_9233 are exactly identical! WARNING: Sequences tr_Q5D212_Q5D212_CHICK_9031 and tr_A0A093HCX1_A0A093HCX1_STRCA_441894 are exactly identical! WARNING: Sequences tr_Q5D212_Q5D212_CHICK_9031 and tr_A0A091W6X1_A0A091W6X1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_Q5D212_Q5D212_CHICK_9031 and tr_A0A0A0AV90_A0A0A0AV90_CHAVO_50402 are exactly identical! WARNING: Sequences tr_Q5D212_Q5D212_CHICK_9031 and tr_A0A093G9Q0_A0A093G9Q0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_Q5D212_Q5D212_CHICK_9031 and tr_A0A091J9F0_A0A091J9F0_CALAN_9244 are exactly identical! WARNING: Sequences tr_R4GJE7_R4GJE7_CHICK_9031 and tr_G1MYD2_G1MYD2_MELGA_9103 are exactly identical! WARNING: Sequences tr_R4GJE7_R4GJE7_CHICK_9031 and tr_G1KB25_G1KB25_ANOCA_28377 are exactly identical! WARNING: Sequences tr_R4GJE7_R4GJE7_CHICK_9031 and tr_H0Z4R6_H0Z4R6_TAEGU_59729 are exactly identical! WARNING: Sequences tr_R4GJE7_R4GJE7_CHICK_9031 and tr_U3JN60_U3JN60_FICAL_59894 are exactly identical! WARNING: Sequences tr_R4GJE7_R4GJE7_CHICK_9031 and tr_A0A0Q3URA7_A0A0Q3URA7_AMAAE_12930 are exactly identical! WARNING: Sequences tr_R4GJE7_R4GJE7_CHICK_9031 and tr_A0A091EHX2_A0A091EHX2_CORBR_85066 are exactly identical! WARNING: Sequences tr_R4GJE7_R4GJE7_CHICK_9031 and tr_A0A093PLV3_A0A093PLV3_9PASS_328815 are exactly identical! WARNING: Sequences tr_R4GJE7_R4GJE7_CHICK_9031 and tr_A0A091UQZ1_A0A091UQZ1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_R4GJE7_R4GJE7_CHICK_9031 and tr_A0A087QQK8_A0A087QQK8_APTFO_9233 are exactly identical! WARNING: Sequences tr_R4GJE7_R4GJE7_CHICK_9031 and tr_A0A093HN85_A0A093HN85_STRCA_441894 are exactly identical! WARNING: Sequences tr_R4GJE7_R4GJE7_CHICK_9031 and tr_A0A099ZFD0_A0A099ZFD0_TINGU_94827 are exactly identical! WARNING: Sequences tr_R4GJE7_R4GJE7_CHICK_9031 and tr_A0A0A0AA15_A0A0A0AA15_CHAVO_50402 are exactly identical! WARNING: Sequences tr_R4GJE7_R4GJE7_CHICK_9031 and tr_A0A3Q0H0B3_A0A3Q0H0B3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_R4GJE7_R4GJE7_CHICK_9031 and tr_A0A1V4K422_A0A1V4K422_PATFA_372326 are exactly identical! WARNING: Sequences tr_R4GJE7_R4GJE7_CHICK_9031 and tr_A0A218UW10_A0A218UW10_9PASE_299123 are exactly identical! WARNING: Sequences tr_R4GJE7_R4GJE7_CHICK_9031 and tr_A0A226PVW3_A0A226PVW3_COLVI_9014 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_M3XX14_M3XX14_MUSPF_9669 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_G3QZL7_G3QZL7_GORGO_9595 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_H2PCE0_H2PCE0_PONAB_9601 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_G1TY74_G1TY74_RABIT_9986 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_H2QNZ9_H2QNZ9_PANTR_9598 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_F7EX93_F7EX93_ORNAN_9258 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_H9H7I0_H9H7I0_MONDO_13616 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_F6PTK2_F6PTK2_HORSE_9796 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_W5QGT5_W5QGT5_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and sp_Q04666_HES1_RAT_10116 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A3B5R959_A0A3B5R959_XIPMA_8083 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_I3N6Q5_I3N6Q5_ICTTR_43179 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_H0Y1W9_H0Y1W9_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A286X8R7_A0A286X8R7_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and sp_Q14469_HES1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_I2CUI4_I2CUI4_MACMU_9544 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_G5ALE8_G5ALE8_HETGA_10181 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_G3T2T2_G3T2T2_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_U3BRX3_U3BRX3_CALJA_9483 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A287AUT4_A0A287AUT4_PIG_9823 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_H3AN33_H3AN33_LATCH_7897 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_G1MBL0_G1MBL0_AILME_9646 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_G8F4A1_G8F4A1_MACFA_9541 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and sp_Q3ZBG4_HES1_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_L5L1K7_L5L1K7_PTEAL_9402 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A337SWV8_A0A337SWV8_FELCA_9685 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A087YMD7_A0A087YMD7_POEFO_48698 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A096MST7_A0A096MST7_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A091ECU8_A0A091ECU8_FUKDA_885580 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A0D9R942_A0A0D9R942_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A1S2ZCZ4_A0A1S2ZCZ4_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A1S3FEV6_A0A1S3FEV6_DIPOR_10020 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A3Q0DLJ4_A0A3Q0DLJ4_TARSY_1868482 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A1U7QDJ3_A0A1U7QDJ3_MESAU_10036 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A2K5MC28_A0A2K5MC28_CERAT_9531 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A2K6CU85_A0A2K6CU85_MACNE_9545 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A2K5ZXN9_A0A2K5ZXN9_MANLE_9568 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A2R8Z6X9_A0A2R8Z6X9_PANPA_9597 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A2U3UZC4_A0A2U3UZC4_TURTR_9739 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A2U3VBL9_A0A2U3VBL9_ODORO_9708 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A2U3Z2C8_A0A2U3Z2C8_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A2Y9DFH8_A0A2Y9DFH8_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A2Y9KHC7_A0A2Y9KHC7_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A2Y9N129_A0A2Y9N129_DELLE_9749 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A2Y9EGS0_A0A2Y9EGS0_PHYCD_9755 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A384D946_A0A384D946_URSMA_29073 are exactly identical! WARNING: Sequences sp_P35428_HES1_MOUSE_10090 and tr_A0A384B7I3_A0A384B7I3_BALAS_310752 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_G3R439_G3R439_GORGO_9595 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_E2QXY9_E2QXY9_CANLF_9615 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_H2R0I1_H2R0I1_PANTR_9598 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_W5Q9K5_W5Q9K5_SHEEP_9940 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and sp_Q03062_HES5_RAT_10116 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_H0Y2K5_H0Y2K5_OTOGA_30611 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_A0A286XGH5_A0A286XGH5_CAVPO_10141 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and sp_Q5TA89_HES5_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_G3SVX1_G3SVX1_LOXAF_9785 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_F6YLV0_F6YLV0_CALJA_9483 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_A0A287BCL3_A0A287BCL3_PIG_9823 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_A6H787_A6H787_BOVIN_9913 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_A0A337RWC8_A0A337RWC8_FELCA_9685 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_A0A2I3M5I8_A0A2I3M5I8_PAPAN_9555 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_A0A0D9S8V3_A0A0D9S8V3_CHLSB_60711 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_A0A1S3A570_A0A1S3A570_ERIEU_9365 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_A0A1U7R1T6_A0A1U7R1T6_MESAU_10036 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_A0A2K5NSZ7_A0A2K5NSZ7_CERAT_9531 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_A0A2K6E063_A0A2K6E063_MACNE_9545 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_A0A2U4B7J7_A0A2U4B7J7_TURTR_9739 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_A0A2U3WFI2_A0A2U3WFI2_ODORO_9708 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_A0A2U3XLZ6_A0A2U3XLZ6_LEPWE_9713 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_A0A2Y9DZJ1_A0A2Y9DZJ1_TRIMA_127582 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_A0A2Y9K887_A0A2Y9K887_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P70120_HES5_MOUSE_10090 and tr_A0A2Y9SQR6_A0A2Y9SQR6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5JCJ8_W5JCJ8_ANODA_43151 and tr_H9J798_H9J798_BOMMO_7091 are exactly identical! WARNING: Sequences tr_W5JCJ8_W5JCJ8_ANODA_43151 and tr_A0A212EH70_A0A212EH70_DANPL_278856 are exactly identical! WARNING: Sequences tr_W5JCJ8_W5JCJ8_ANODA_43151 and tr_A0A2A4ISU6_A0A2A4ISU6_HELVI_7102 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_G1U397_G1U397_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_E2R0Q2_E2R0Q2_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_F6SQL7_F6SQL7_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_W5PTE4_W5PTE4_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_I3MG34_I3MG34_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_H0VV84_H0VV84_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_G3SY12_G3SY12_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_F7GN68_F7GN68_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_G1LTE4_G1LTE4_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_E1B6Z2_E1B6Z2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_L5KJ78_L5KJ78_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_A0A337S964_A0A337S964_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_A0A1S3ACE2_A0A1S3ACE2_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_A0A3Q0D6J1_A0A3Q0D6J1_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_A0A2U3WPK4_A0A2U3WPK4_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_A0A2U3YRT1_A0A2U3YRT1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_A0A2Y9E2V4_A0A2Y9E2V4_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3Y6G7_M3Y6G7_MUSPF_9669 and tr_A0A384CEA8_A0A384CEA8_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YR52_M3YR52_MUSPF_9669 and tr_A0A2Y9K9H0_A0A2Y9K9H0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_H2LW90_H2LW90_ORYLA_8090 and tr_U3KPN3_U3KPN3_RABIT_9986 are exactly identical! WARNING: Sequences tr_H2LW90_H2LW90_ORYLA_8090 and tr_J9P9B3_J9P9B3_CANLF_9615 are exactly identical! WARNING: Sequences tr_H2LW90_H2LW90_ORYLA_8090 and tr_I3KR88_I3KR88_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2LW90_H2LW90_ORYLA_8090 and tr_G3TCT0_G3TCT0_LOXAF_9785 are exactly identical! WARNING: Sequences tr_H2LW90_H2LW90_ORYLA_8090 and tr_A0A0P7TVY1_A0A0P7TVY1_9TELE_113540 are exactly identical! WARNING: Sequences tr_H2LW90_H2LW90_ORYLA_8090 and tr_A0A151M3B8_A0A151M3B8_ALLMI_8496 are exactly identical! WARNING: Sequences tr_H2LW90_H2LW90_ORYLA_8090 and tr_A0A091EZD5_A0A091EZD5_CORBR_85066 are exactly identical! WARNING: Sequences tr_H2LW90_H2LW90_ORYLA_8090 and tr_A0A091JL01_A0A091JL01_EGRGA_188379 are exactly identical! WARNING: Sequences tr_H2LW90_H2LW90_ORYLA_8090 and tr_A0A093S056_A0A093S056_9PASS_328815 are exactly identical! WARNING: Sequences tr_H2LW90_H2LW90_ORYLA_8090 and tr_A0A0A0A8G8_A0A0A0A8G8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_H2LW90_H2LW90_ORYLA_8090 and tr_A0A2I0MUF9_A0A2I0MUF9_COLLI_8932 are exactly identical! WARNING: Sequences tr_H2LW90_H2LW90_ORYLA_8090 and tr_A0A093HCQ4_A0A093HCQ4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_H2LW90_H2LW90_ORYLA_8090 and tr_A0A1V4JLQ9_A0A1V4JLQ9_PATFA_372326 are exactly identical! WARNING: Sequences tr_H2LW90_H2LW90_ORYLA_8090 and tr_A0A2I4CK54_A0A2I4CK54_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2LW90_H2LW90_ORYLA_8090 and tr_A0A226P2F0_A0A226P2F0_COLVI_9014 are exactly identical! WARNING: Sequences tr_H2LW90_H2LW90_ORYLA_8090 and tr_A0A2D0Q1I2_A0A2D0Q1I2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_H2LW90_H2LW90_ORYLA_8090 and tr_A0A384C4V9_A0A384C4V9_URSMA_29073 are exactly identical! WARNING: Sequences tr_H2MKT8_H2MKT8_ORYLA_8090 and tr_A0A2U9B605_A0A2U9B605_SCOMX_52904 are exactly identical! WARNING: Sequences tr_Q1L7T9_Q1L7T9_ORYLA_8090 and tr_I3J0Z6_I3J0Z6_ORENI_8128 are exactly identical! WARNING: Sequences tr_Q1L7T9_Q1L7T9_ORYLA_8090 and tr_A0A2I4ANU1_A0A2I4ANU1_9TELE_52670 are exactly identical! WARNING: Sequences tr_G1PQV2_G1PQV2_MYOLU_59463 and tr_A0A2U4AZK4_A0A2U4AZK4_TURTR_9739 are exactly identical! WARNING: Sequences tr_G1PQV2_G1PQV2_MYOLU_59463 and tr_A0A2Y9Q9X7_A0A2Y9Q9X7_DELLE_9749 are exactly identical! WARNING: Sequences tr_G1PQV2_G1PQV2_MYOLU_59463 and tr_A0A2Y9SWV6_A0A2Y9SWV6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G1PQV2_G1PQV2_MYOLU_59463 and tr_A0A383YU98_A0A383YU98_BALAS_310752 are exactly identical! WARNING: Sequences tr_G3RC48_G3RC48_GORGO_9595 and tr_H2R3T5_H2R3T5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RC48_G3RC48_GORGO_9595 and sp_Q9HCC6_HES4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RC48_G3RC48_GORGO_9595 and tr_A0A1D5R597_A0A1D5R597_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3RC48_G3RC48_GORGO_9595 and tr_A0A096P2D0_A0A096P2D0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RC48_G3RC48_GORGO_9595 and tr_A0A2K5LAM7_A0A2K5LAM7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RC48_G3RC48_GORGO_9595 and tr_A0A2K6BR59_A0A2K6BR59_MACNE_9545 are exactly identical! WARNING: Sequences tr_C3YR36_C3YR36_BRAFL_7739 and tr_C3YR42_C3YR42_BRAFL_7739 are exactly identical! WARNING: Sequences tr_C3YR36_C3YR36_BRAFL_7739 and tr_C3ZIK9_C3ZIK9_BRAFL_7739 are exactly identical! WARNING: Sequences tr_H2N9B4_H2N9B4_PONAB_9601 and tr_H2PXW5_H2PXW5_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2N9B4_H2N9B4_PONAB_9601 and sp_Q5TGS1_HES3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2N9B4_H2N9B4_PONAB_9601 and tr_A0A096NEV0_A0A096NEV0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2N9B4_H2N9B4_PONAB_9601 and tr_A0A2K5M0Y3_A0A2K5M0Y3_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2N9B4_H2N9B4_PONAB_9601 and tr_A0A2K6BCQ7_A0A2K6BCQ7_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1MT12_G1MT12_MELGA_9103 and tr_A0A1U7RNT0_A0A1U7RNT0_ALLSI_38654 are exactly identical! WARNING: Sequences tr_G1MT31_G1MT31_MELGA_9103 and tr_A0A151N468_A0A151N468_ALLMI_8496 are exactly identical! WARNING: Sequences tr_G1MT31_G1MT31_MELGA_9103 and tr_A0A091G3Z8_A0A091G3Z8_9AVES_55661 are exactly identical! WARNING: Sequences tr_G1MT31_G1MT31_MELGA_9103 and tr_A0A1U7RA69_A0A1U7RA69_ALLSI_38654 are exactly identical! WARNING: Sequences tr_G1MT31_G1MT31_MELGA_9103 and tr_A0A226MDL8_A0A226MDL8_CALSU_9009 are exactly identical! WARNING: Sequences tr_G1MT31_G1MT31_MELGA_9103 and tr_A0A226PEY7_A0A226PEY7_COLVI_9014 are exactly identical! WARNING: Sequences tr_Q296Y6_Q296Y6_DROPS_46245 and tr_B4GEG7_B4GEG7_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2R7Q8_E2R7Q8_CANLF_9615 and tr_A0A287AS85_A0A287AS85_PIG_9823 are exactly identical! WARNING: Sequences tr_E2R7Q8_E2R7Q8_CANLF_9615 and tr_L5L906_L5L906_PTEAL_9402 are exactly identical! WARNING: Sequences tr_E2R7Q8_E2R7Q8_CANLF_9615 and tr_A0A2U3WFR9_A0A2U3WFR9_ODORO_9708 are exactly identical! WARNING: Sequences tr_E2R7Q8_E2R7Q8_CANLF_9615 and tr_A0A2U3XLZ9_A0A2U3XLZ9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_F6ZYK3_F6ZYK3_MONDO_13616 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_K7F8F9_K7F8F9_PELSI_13735 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_G3WNC1_G3WNC1_SARHA_9305 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_G3WP80_G3WP80_SARHA_9305 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_H0YXD3_H0YXD3_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_H1A1U8_H1A1U8_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_U3K4L3_U3K4L3_FICAL_59894 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_R0M0C0_R0M0C0_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A091F8D9_A0A091F8D9_CORBR_85066 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A091FUE1_A0A091FUE1_CORBR_85066 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A093Q8P2_A0A093Q8P2_9PASS_328815 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A093QEV8_A0A093QEV8_9PASS_328815 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A091USS3_A0A091USS3_NIPNI_128390 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A087QS69_A0A087QS69_APTFO_9233 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A093HAC0_A0A093HAC0_STRCA_441894 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A099ZUR0_A0A099ZUR0_TINGU_94827 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A091G292_A0A091G292_9AVES_55661 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A0A0AT21_A0A0A0AT21_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A2I0M2Y3_A0A2I0M2Y3_COLLI_8932 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A093G036_A0A093G036_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A093I9U3_A0A093I9U3_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A091II79_A0A091II79_CALAN_9244 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A1V4KNM8_A0A1V4KNM8_PATFA_372326 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A218UR06_A0A218UR06_9PASE_299123 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A226MN87_A0A226MN87_CALSU_9009 are exactly identical! WARNING: Sequences tr_F6ZYD3_F6ZYD3_MONDO_13616 and tr_A0A226PDI6_A0A226PDI6_COLVI_9014 are exactly identical! WARNING: Sequences tr_B0WDP0_B0WDP0_CULQU_7176 and tr_A0A088A8V4_A0A088A8V4_APIME_7460 are exactly identical! WARNING: Sequences tr_B0WDP0_B0WDP0_CULQU_7176 and tr_A0A0L7R3R9_A0A0L7R3R9_9HYME_597456 are exactly identical! WARNING: Sequences tr_B0WDP0_B0WDP0_CULQU_7176 and tr_A0A154PQ90_A0A154PQ90_9HYME_178035 are exactly identical! WARNING: Sequences tr_B0WDP0_B0WDP0_CULQU_7176 and tr_A0A2A3EJJ6_A0A2A3EJJ6_APICC_94128 are exactly identical! WARNING: Sequences tr_B0WEP5_B0WEP5_CULQU_7176 and tr_Q17DP5_Q17DP5_AEDAE_7159 are exactly identical! WARNING: Sequences tr_K7J0X7_K7J0X7_NASVI_7425 and tr_A0A088A8T8_A0A088A8T8_APIME_7460 are exactly identical! WARNING: Sequences tr_K7J0X7_K7J0X7_NASVI_7425 and tr_A0A0M8ZV60_A0A0M8ZV60_9HYME_166423 are exactly identical! WARNING: Sequences tr_K7J0X7_K7J0X7_NASVI_7425 and tr_A0A0L7R466_A0A0L7R466_9HYME_597456 are exactly identical! WARNING: Sequences tr_K7J0X7_K7J0X7_NASVI_7425 and tr_A0A154PRZ7_A0A154PRZ7_9HYME_178035 are exactly identical! WARNING: Sequences tr_K7J0X7_K7J0X7_NASVI_7425 and tr_A0A2A3EIY2_A0A2A3EIY2_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A3B5QLM2_A0A3B5QLM2_XIPMA_8083 and tr_A0A096M9A9_A0A096M9A9_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QZU0_A0A3B5QZU0_XIPMA_8083 and tr_M3ZVH1_M3ZVH1_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A3B5QZU0_A0A3B5QZU0_XIPMA_8083 and tr_I3IVV9_I3IVV9_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B5QZU0_A0A3B5QZU0_XIPMA_8083 and tr_A0A087YH15_A0A087YH15_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QZU0_A0A3B5QZU0_XIPMA_8083 and tr_A0A087YH16_A0A087YH16_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5RC96_A0A3B5RC96_XIPMA_8083 and tr_G3NT86_G3NT86_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A3B5RC96_A0A3B5RC96_XIPMA_8083 and tr_A0A2I4ANL5_A0A2I4ANL5_9TELE_52670 are exactly identical! WARNING: Sequences tr_M4AW39_M4AW39_XIPMA_8083 and tr_A0A087XZI3_A0A087XZI3_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AWT1_M4AWT1_XIPMA_8083 and tr_I3J0Z9_I3J0Z9_ORENI_8128 are exactly identical! WARNING: Sequences tr_M4AWT1_M4AWT1_XIPMA_8083 and tr_A0A087Y6A6_A0A087Y6A6_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AWT3_M4AWT3_XIPMA_8083 and tr_A0A087Y6B1_A0A087Y6B1_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AWT3_M4AWT3_XIPMA_8083 and tr_A0A2U9BYN6_A0A2U9BYN6_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A087ZP51_A0A087ZP51_APIME_7460 and tr_A0A158NKN1_A0A158NKN1_ATTCE_12957 are exactly identical! WARNING: Sequences tr_A0A087ZP51_A0A087ZP51_APIME_7460 and tr_E2BYL5_E2BYL5_HARSA_610380 are exactly identical! WARNING: Sequences tr_A0A087ZP51_A0A087ZP51_APIME_7460 and tr_A0A026WU15_A0A026WU15_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_A0A087ZP51_A0A087ZP51_APIME_7460 and tr_A0A0M9A2E4_A0A0M9A2E4_9HYME_166423 are exactly identical! WARNING: Sequences tr_A0A087ZP51_A0A087ZP51_APIME_7460 and tr_A0A154PTA7_A0A154PTA7_9HYME_178035 are exactly identical! WARNING: Sequences tr_A0A087ZP51_A0A087ZP51_APIME_7460 and tr_A0A195DGA8_A0A195DGA8_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A087ZP51_A0A087ZP51_APIME_7460 and tr_A0A195BNF1_A0A195BNF1_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A087ZP51_A0A087ZP51_APIME_7460 and tr_A0A195FBS9_A0A195FBS9_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A087ZP51_A0A087ZP51_APIME_7460 and tr_A0A2A3ENQ3_A0A2A3ENQ3_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NNH0_A0A158NNH0_ATTCE_12957 and tr_F4WQH7_F4WQH7_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NNH0_A0A158NNH0_ATTCE_12957 and tr_A0A026VZJ9_A0A026VZJ9_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_A0A158NNH0_A0A158NNH0_ATTCE_12957 and tr_A0A151WWM7_A0A151WWM7_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NNH0_A0A158NNH0_ATTCE_12957 and tr_A0A195DKM5_A0A195DKM5_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NNH0_A0A158NNH0_ATTCE_12957 and tr_A0A195B2S5_A0A195B2S5_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NNH0_A0A158NNH0_ATTCE_12957 and tr_A0A195F830_A0A195F830_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NNH0_A0A158NNH0_ATTCE_12957 and tr_A0A195D7I2_A0A195D7I2_9HYME_456900 are exactly identical! WARNING: Sequences tr_Q7PUZ5_Q7PUZ5_ANOGA_7165 and tr_A0A084VI88_A0A084VI88_ANOSI_74873 are exactly identical! WARNING: Sequences tr_Q7Q509_Q7Q509_ANOGA_7165 and tr_Q16NK4_Q16NK4_AEDAE_7159 are exactly identical! WARNING: Sequences tr_Q7Q509_Q7Q509_ANOGA_7165 and tr_A0A067QJU3_A0A067QJU3_ZOONE_136037 are exactly identical! WARNING: Sequences tr_D6WXM9_D6WXM9_TRICA_7070 and tr_A0A1J1HGE7_A0A1J1HGE7_9DIPT_568069 are exactly identical! WARNING: Sequences tr_D6WXM9_D6WXM9_TRICA_7070 and tr_A0A1W4XRT7_A0A1W4XRT7_AGRPL_224129 are exactly identical! WARNING: Sequences tr_H3D369_H3D369_TETNG_99883 and tr_A0A2I4ANR0_A0A2I4ANR0_9TELE_52670 are exactly identical! WARNING: Sequences tr_G3NK15_G3NK15_GASAC_69293 and tr_G3NK20_G3NK20_GASAC_69293 are exactly identical! WARNING: Sequences tr_G3NK15_G3NK15_GASAC_69293 and tr_G3NK28_G3NK28_GASAC_69293 are exactly identical! WARNING: Sequences tr_G3NK15_G3NK15_GASAC_69293 and tr_G3NK32_G3NK32_GASAC_69293 are exactly identical! WARNING: Sequences tr_G3NK15_G3NK15_GASAC_69293 and tr_G3NK34_G3NK34_GASAC_69293 are exactly identical! WARNING: Sequences tr_G3NK15_G3NK15_GASAC_69293 and tr_G3NK37_G3NK37_GASAC_69293 are exactly identical! WARNING: Sequences tr_G3NK15_G3NK15_GASAC_69293 and tr_G3NK40_G3NK40_GASAC_69293 are exactly identical! WARNING: Sequences tr_G3UIT0_G3UIT0_LOXAF_9785 and tr_F1N0L3_F1N0L3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_H0YXD5_H0YXD5_TAEGU_59729 and tr_U3K4L2_U3K4L2_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0YXD5_H0YXD5_TAEGU_59729 and tr_U3IK19_U3IK19_ANAPL_8839 are exactly identical! WARNING: Sequences tr_H0YXD5_H0YXD5_TAEGU_59729 and tr_A0A0Q3UQN8_A0A0Q3UQN8_AMAAE_12930 are exactly identical! WARNING: Sequences tr_H0YXD5_H0YXD5_TAEGU_59729 and tr_A0A091IQC4_A0A091IQC4_EGRGA_188379 are exactly identical! WARNING: Sequences tr_H0YXD5_H0YXD5_TAEGU_59729 and tr_A0A091UTJ4_A0A091UTJ4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0YXD5_H0YXD5_TAEGU_59729 and tr_A0A087QS70_A0A087QS70_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0YXD5_H0YXD5_TAEGU_59729 and tr_A0A091W4M0_A0A091W4M0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_H0YXD5_H0YXD5_TAEGU_59729 and tr_A0A091G659_A0A091G659_9AVES_55661 are exactly identical! WARNING: Sequences tr_H0YXD5_H0YXD5_TAEGU_59729 and tr_A0A0A0AST1_A0A0A0AST1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_H0YXD5_H0YXD5_TAEGU_59729 and tr_A0A2I0M2W8_A0A2I0M2W8_COLLI_8932 are exactly identical! WARNING: Sequences tr_H0YXD5_H0YXD5_TAEGU_59729 and tr_A0A091ILV8_A0A091ILV8_CALAN_9244 are exactly identical! WARNING: Sequences tr_H0YXD5_H0YXD5_TAEGU_59729 and tr_A0A1V4KNJ4_A0A1V4KNJ4_PATFA_372326 are exactly identical! WARNING: Sequences tr_H0YXD5_H0YXD5_TAEGU_59729 and tr_A0A218UPY3_A0A218UPY3_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0YXD5_H0YXD5_TAEGU_59729 and tr_A0A226M8T0_A0A226M8T0_CALSU_9009 are exactly identical! WARNING: Sequences tr_H0YXD5_H0YXD5_TAEGU_59729 and tr_A0A226MDL9_A0A226MDL9_CALSU_9009 are exactly identical! WARNING: Sequences tr_H0YXD5_H0YXD5_TAEGU_59729 and tr_A0A226PDW2_A0A226PDW2_COLVI_9014 are exactly identical! WARNING: Sequences tr_H2YNP7_H2YNP7_CIOSA_51511 and tr_F6TXK6_F6TXK6_CIOIN_7719 are exactly identical! WARNING: Sequences tr_F6TW48_F6TW48_XENTR_8364 and tr_A0A0U2KF03_A0A0U2KF03_XENLA_8355 are exactly identical! WARNING: Sequences tr_F6TW48_F6TW48_XENTR_8364 and tr_A0A1L8FGF9_A0A1L8FGF9_XENLA_8355 are exactly identical! WARNING: Sequences tr_F6UTF9_F6UTF9_XENTR_8364 and tr_A0A1L8FMG9_A0A1L8FMG9_XENLA_8355 are exactly identical! WARNING: Sequences tr_Q0VFM2_Q0VFM2_XENTR_8364 and tr_A0A1L8G532_A0A1L8G532_XENLA_8355 are exactly identical! WARNING: Sequences tr_Q0VFM2_Q0VFM2_XENTR_8364 and tr_A0A1L8GBF1_A0A1L8GBF1_XENLA_8355 are exactly identical! WARNING: Sequences tr_A8WUV4_A8WUV4_CAEBR_6238 and tr_A0A2G5U5C3_A0A2G5U5C3_9PELO_1611254 are exactly identical! WARNING: Sequences tr_G1LT91_G1LT91_AILME_9646 and tr_A0A2U3WPJ9_A0A2U3WPJ9_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1LT91_G1LT91_AILME_9646 and tr_A0A2U3Z0M9_A0A2U3Z0M9_LEPWE_9713 are exactly identical! WARNING: Sequences tr_T1KB39_T1KB39_TETUR_32264 and tr_T1KB43_T1KB43_TETUR_32264 are exactly identical! WARNING: Sequences tr_A0A3B1IFW9_A0A3B1IFW9_ASTMX_7994 and tr_A0A3B1IMT1_A0A3B1IMT1_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A3B1IFW9_A0A3B1IFW9_ASTMX_7994 and tr_A0A3B1IVY3_A0A3B1IVY3_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A3B1IFW9_A0A3B1IFW9_ASTMX_7994 and tr_A0A3B1JPV2_A0A3B1JPV2_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A3B1IFW9_A0A3B1IFW9_ASTMX_7994 and tr_A0A3B1K3I1_A0A3B1K3I1_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A3B1JN82_A0A3B1JN82_ASTMX_7994 and tr_A0A3B1JQ24_A0A3B1JQ24_ASTMX_7994 are exactly identical! WARNING: Sequences tr_W5N9J2_W5N9J2_LEPOC_7918 and tr_A0A2D0QJ31_A0A2D0QJ31_ICTPU_7998 are exactly identical! WARNING: Sequences tr_W5N9J2_W5N9J2_LEPOC_7918 and tr_A0A2D0R7V3_A0A2D0R7V3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A067QUN5_A0A067QUN5_ZOONE_136037 and tr_A0A2J7R4D2_A0A2J7R4D2_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A067RJ71_A0A067RJ71_ZOONE_136037 and tr_A0A2J7PIP0_A0A2J7PIP0_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A067RJ71_A0A067RJ71_ZOONE_136037 and tr_A0A2P8ZNZ0_A0A2P8ZNZ0_BLAGE_6973 are exactly identical! WARNING: Sequences tr_A0A067RNG2_A0A067RNG2_ZOONE_136037 and tr_A0A2J7RRA2_A0A2J7RRA2_9NEOP_105785 are exactly identical! WARNING: Sequences tr_A0A067RNG2_A0A067RNG2_ZOONE_136037 and tr_A0A2P8Z236_A0A2P8Z236_BLAGE_6973 are exactly identical! WARNING: Sequences tr_A0A151MCR8_A0A151MCR8_ALLMI_8496 and tr_A0A1U7SYS0_A0A1U7SYS0_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151N3M8_A0A151N3M8_ALLMI_8496 and tr_A0A3Q0HB34_A0A3Q0HB34_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0R3QIJ9_A0A0R3QIJ9_9BILA_42155 and tr_A0A1I7VWV5_A0A1I7VWV5_LOALO_7209 are exactly identical! WARNING: Sequences tr_A0A194RCC4_A0A194RCC4_PAPMA_76193 and tr_A0A194Q2Q6_A0A194Q2Q6_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A194RLG8_A0A194RLG8_PAPMA_76193 and tr_A0A194Q4E3_A0A194Q4E3_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A0L7QQY2_A0A0L7QQY2_9HYME_597456 and tr_A0A2A3EMJ7_A0A2A3EMJ7_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A0A0AEW3_A0A0A0AEW3_CHAVO_50402 and tr_A0A093H7R8_A0A093H7R8_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1S3LDT6_A0A1S3LDT6_SALSA_8030 and tr_A0A1S3LDU4_A0A1S3LDU4_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3LJI3_A0A1S3LJI3_SALSA_8030 and tr_A0A060XDS1_A0A060XDS1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MF56_A0A1S3MF56_SALSA_8030 and tr_A0A060XEB0_A0A060XEB0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3P2A0_A0A1S3P2A0_SALSA_8030 and tr_A0A1S3P2F5_A0A1S3P2F5_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3SER9_A0A1S3SER9_SALSA_8030 and tr_A0A060Y593_A0A060Y593_ONCMY_8022 are exactly identical! WARNING: Sequences tr_B9EQ81_B9EQ81_SALSA_8030 and tr_A0A060WTG5_A0A060WTG5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2A2JAL2_A0A2A2JAL2_9BILA_2018661 and tr_A0A2A2LVS9_A0A2A2LVS9_9BILA_2018661 are exactly identical! WARNING: Sequences tr_A0A2D0PI40_A0A2D0PI40_ICTPU_7998 and tr_A0A2D0PKB5_A0A2D0PKB5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2G8JQ79_A0A2G8JQ79_STIJA_307972 and tr_A0A2G8LFC2_A0A2G8LFC2_STIJA_307972 are exactly identical! WARNING: Sequences tr_A0A2U4AZX2_A0A2U4AZX2_TURTR_9739 and tr_A0A2Y9Q9X2_A0A2Y9Q9X2_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4B8N2_A0A2U4B8N2_TURTR_9739 and tr_A0A2Y9Q5C6_A0A2Y9Q5C6_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 398 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TGS1/3_mltree/Q5TGS1.raxml.reduced.phy Alignment comprises 1 partitions and 42 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 42 / 42 Gaps: 0.38 % Invariant sites: 7.14 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TGS1/3_mltree/Q5TGS1.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 696 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 42 / 3360 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -30746.389569] Initial branch length optimization [00:00:00 -24540.854983] Model parameter optimization (eps = 10.000000) [00:00:10 -24309.169905] AUTODETECT spr round 1 (radius: 5) [00:00:47 -16595.511461] AUTODETECT spr round 2 (radius: 10) [00:01:25 -12214.479526] AUTODETECT spr round 3 (radius: 15) [00:02:07 -9474.979686] AUTODETECT spr round 4 (radius: 20) [00:02:52 -7590.994802] AUTODETECT spr round 5 (radius: 25) [00:03:43 -7118.214795] SPR radius for FAST iterations: 25 (autodetect) [00:03:43 -7118.214795] Model parameter optimization (eps = 3.000000) [00:03:50 -7099.613527] FAST spr round 1 (radius: 25) [00:04:27 -5432.375113] FAST spr round 2 (radius: 25) [00:05:01 -5201.265360] FAST spr round 3 (radius: 25) [00:05:33 -5163.084537] FAST spr round 4 (radius: 25) [00:06:05 -5160.537483] FAST spr round 5 (radius: 25) [00:06:36 -5159.838840] FAST spr round 6 (radius: 25) [00:07:06 -5159.838121] Model parameter optimization (eps = 1.000000) [00:07:13 -5154.614815] SLOW spr round 1 (radius: 5) [00:07:47 -5151.296590] SLOW spr round 2 (radius: 5) [00:08:20 -5151.296470] SLOW spr round 3 (radius: 10) [00:08:55 -5147.368245] SLOW spr round 4 (radius: 5) [00:09:32 -5144.608809] SLOW spr round 5 (radius: 5) [00:10:05 -5144.608782] SLOW spr round 6 (radius: 10) [00:10:40 -5144.608782] SLOW spr round 7 (radius: 15) [00:11:24 -5120.308669] SLOW spr round 8 (radius: 5) [00:12:05 -5115.688130] SLOW spr round 9 (radius: 5) [00:12:40 -5115.344656] SLOW spr round 10 (radius: 5) [00:13:13 -5115.326927] SLOW spr round 11 (radius: 10) [00:13:48 -5115.321702] SLOW spr round 12 (radius: 15) [00:14:31 -5115.321222] SLOW spr round 13 (radius: 20) [00:15:29 -5114.427313] SLOW spr round 14 (radius: 5) [00:16:09 -5114.427313] SLOW spr round 15 (radius: 10) [00:16:46 -5113.105478] SLOW spr round 16 (radius: 5) [00:17:23 -5113.105294] SLOW spr round 17 (radius: 10) [00:17:58 -5113.105291] SLOW spr round 18 (radius: 15) [00:18:42 -5113.105291] SLOW spr round 19 (radius: 20) [00:19:40 -5113.105291] SLOW spr round 20 (radius: 25) [00:20:47 -5113.105262] Model parameter optimization (eps = 0.100000) [00:20:53] ML tree search #1, logLikelihood: -5112.894231 [00:20:53 -30694.747138] Initial branch length optimization [00:20:54 -24179.991163] Model parameter optimization (eps = 10.000000) [00:21:06 -23952.089212] AUTODETECT spr round 1 (radius: 5) [00:21:41 -16345.700597] AUTODETECT spr round 2 (radius: 10) [00:22:18 -11490.374031] AUTODETECT spr round 3 (radius: 15) [00:22:59 -9179.546745] AUTODETECT spr round 4 (radius: 20) [00:23:48 -7715.699562] AUTODETECT spr round 5 (radius: 25) [00:24:37 -6875.351909] SPR radius for FAST iterations: 25 (autodetect) [00:24:37 -6875.351909] Model parameter optimization (eps = 3.000000) [00:24:46 -6850.561096] FAST spr round 1 (radius: 25) [00:25:22 -5607.402398] FAST spr round 2 (radius: 25) [00:25:56 -5537.773434] FAST spr round 3 (radius: 25) [00:26:29 -5534.324558] FAST spr round 4 (radius: 25) [00:27:01 -5534.324358] Model parameter optimization (eps = 1.000000) [00:27:07 -5533.916082] SLOW spr round 1 (radius: 5) [00:27:41 -5533.857680] SLOW spr round 2 (radius: 10) [00:28:17 -5531.159351] SLOW spr round 3 (radius: 5) [00:28:56 -5524.002363] SLOW spr round 4 (radius: 5) [00:29:30 -5524.000092] SLOW spr round 5 (radius: 10) [00:30:04 -5523.999423] SLOW spr round 6 (radius: 15) [00:30:47 -5501.252145] SLOW spr round 7 (radius: 5) [00:31:28 -5496.377440] SLOW spr round 8 (radius: 5) [00:32:03 -5496.334072] SLOW spr round 9 (radius: 10) [00:32:39 -5496.332597] SLOW spr round 10 (radius: 15) [00:33:20 -5495.676959] SLOW spr round 11 (radius: 5) [00:34:00 -5495.676632] SLOW spr round 12 (radius: 10) [00:34:36 -5495.048693] SLOW spr round 13 (radius: 5) [00:35:13 -5495.048543] SLOW spr round 14 (radius: 10) [00:35:48 -5495.048473] SLOW spr round 15 (radius: 15) [00:36:30 -5495.048432] SLOW spr round 16 (radius: 20) [00:37:23 -5490.950729] SLOW spr round 17 (radius: 5) [00:38:03 -5489.474104] SLOW spr round 18 (radius: 5) [00:38:39 -5488.605154] SLOW spr round 19 (radius: 5) [00:39:13 -5488.605149] SLOW spr round 20 (radius: 10) [00:39:48 -5488.605146] SLOW spr round 21 (radius: 15) [00:40:29 -5485.535616] SLOW spr round 22 (radius: 5) [00:41:09 -5482.919158] SLOW spr round 23 (radius: 5) [00:41:44 -5482.896597] SLOW spr round 24 (radius: 10) [00:42:19 -5482.895386] SLOW spr round 25 (radius: 15) [00:43:00 -5482.895232] SLOW spr round 26 (radius: 20) [00:43:50 -5482.146377] SLOW spr round 27 (radius: 5) [00:44:30 -5482.146363] SLOW spr round 28 (radius: 10) [00:45:07 -5482.146363] SLOW spr round 29 (radius: 15) [00:45:48 -5482.146363] SLOW spr round 30 (radius: 20) [00:46:38 -5482.146363] SLOW spr round 31 (radius: 25) [00:47:33 -5480.838273] SLOW spr round 32 (radius: 5) [00:48:14 -5480.347744] SLOW spr round 33 (radius: 5) [00:48:49 -5480.346748] SLOW spr round 34 (radius: 10) [00:49:25 -5478.373934] SLOW spr round 35 (radius: 5) [00:50:02 -5474.725439] SLOW spr round 36 (radius: 5) [00:50:35 -5474.725292] SLOW spr round 37 (radius: 10) [00:51:10 -5474.725291] SLOW spr round 38 (radius: 15) [00:51:51 -5474.725291] SLOW spr round 39 (radius: 20) [00:52:41 -5474.725291] SLOW spr round 40 (radius: 25) [00:53:37 -5474.725291] Model parameter optimization (eps = 0.100000) [00:53:43] ML tree search #2, logLikelihood: -5474.244393 [00:53:43 -30346.339613] Initial branch length optimization [00:53:43 -24199.345438] Model parameter optimization (eps = 10.000000) [00:53:56 -23969.105811] AUTODETECT spr round 1 (radius: 5) [00:54:32 -16281.174206] AUTODETECT spr round 2 (radius: 10) [00:55:10 -11717.982064] AUTODETECT spr round 3 (radius: 15) [00:55:50 -9226.114317] AUTODETECT spr round 4 (radius: 20) [00:56:37 -8048.763653] AUTODETECT spr round 5 (radius: 25) [00:57:28 -7490.503975] SPR radius for FAST iterations: 25 (autodetect) [00:57:28 -7490.503975] Model parameter optimization (eps = 3.000000) [00:57:37 -7480.183507] FAST spr round 1 (radius: 25) [00:58:14 -5606.012373] FAST spr round 2 (radius: 25) [00:58:49 -5282.603247] FAST spr round 3 (radius: 25) [00:59:24 -5177.809020] FAST spr round 4 (radius: 25) [00:59:57 -5170.782390] FAST spr round 5 (radius: 25) [01:00:30 -5170.508981] FAST spr round 6 (radius: 25) [01:01:02 -5170.241546] FAST spr round 7 (radius: 25) [01:01:34 -5170.241520] Model parameter optimization (eps = 1.000000) [01:01:39 -5169.419192] SLOW spr round 1 (radius: 5) [01:02:13 -5166.805560] SLOW spr round 2 (radius: 5) [01:02:48 -5166.804881] SLOW spr round 3 (radius: 10) [01:03:24 -5165.124439] SLOW spr round 4 (radius: 5) [01:04:02 -5164.906458] SLOW spr round 5 (radius: 5) [01:04:36 -5164.906454] SLOW spr round 6 (radius: 10) [01:05:12 -5163.840868] SLOW spr round 7 (radius: 5) [01:05:50 -5163.840853] SLOW spr round 8 (radius: 10) [01:06:26 -5163.840853] SLOW spr round 9 (radius: 15) [01:07:10 -5162.793017] SLOW spr round 10 (radius: 5) [01:07:52 -5162.167684] SLOW spr round 11 (radius: 5) [01:08:27 -5162.167642] SLOW spr round 12 (radius: 10) [01:09:04 -5162.167607] SLOW spr round 13 (radius: 15) [01:09:47 -5162.167607] SLOW spr round 14 (radius: 20) [01:10:43 -5160.619828] SLOW spr round 15 (radius: 5) [01:11:26 -5157.932379] SLOW spr round 16 (radius: 5) [01:12:03 -5157.932379] SLOW spr round 17 (radius: 10) [01:12:38 -5157.932365] SLOW spr round 18 (radius: 15) [01:13:22 -5157.932341] SLOW spr round 19 (radius: 20) [01:14:16 -5157.932341] SLOW spr round 20 (radius: 25) [01:15:19 -5157.062243] SLOW spr round 21 (radius: 5) [01:16:00 -5157.062240] SLOW spr round 22 (radius: 10) [01:16:40 -5155.659622] SLOW spr round 23 (radius: 5) [01:17:18 -5155.659593] SLOW spr round 24 (radius: 10) [01:17:53 -5155.659000] SLOW spr round 25 (radius: 15) [01:18:36 -5155.659000] SLOW spr round 26 (radius: 20) [01:19:31 -5155.659000] SLOW spr round 27 (radius: 25) [01:20:33 -5155.659000] Model parameter optimization (eps = 0.100000) [01:20:40] ML tree search #3, logLikelihood: -5155.497805 [01:20:40 -30009.360469] Initial branch length optimization [01:20:40 -24131.964124] Model parameter optimization (eps = 10.000000) [01:20:54 -23914.255682] AUTODETECT spr round 1 (radius: 5) [01:21:29 -15836.192420] AUTODETECT spr round 2 (radius: 10) [01:22:06 -11566.455433] AUTODETECT spr round 3 (radius: 15) [01:22:46 -9159.196933] AUTODETECT spr round 4 (radius: 20) [01:23:32 -7646.285728] AUTODETECT spr round 5 (radius: 25) [01:24:19 -7007.953824] SPR radius for FAST iterations: 25 (autodetect) [01:24:19 -7007.953824] Model parameter optimization (eps = 3.000000) [01:24:28 -6988.153081] FAST spr round 1 (radius: 25) [01:25:04 -5713.102088] FAST spr round 2 (radius: 25) [01:25:38 -5572.886592] FAST spr round 3 (radius: 25) [01:26:11 -5549.864921] FAST spr round 4 (radius: 25) [01:26:42 -5549.860968] Model parameter optimization (eps = 1.000000) [01:26:50 -5545.565843] SLOW spr round 1 (radius: 5) [01:27:24 -5543.366571] SLOW spr round 2 (radius: 5) [01:27:58 -5543.366135] SLOW spr round 3 (radius: 10) [01:28:34 -5537.068326] SLOW spr round 4 (radius: 5) [01:29:13 -5535.488293] SLOW spr round 5 (radius: 5) [01:29:47 -5535.488095] SLOW spr round 6 (radius: 10) [01:30:23 -5535.488088] SLOW spr round 7 (radius: 15) [01:31:08 -5523.747881] SLOW spr round 8 (radius: 5) [01:31:50 -5512.946724] SLOW spr round 9 (radius: 5) [01:32:25 -5512.946722] SLOW spr round 10 (radius: 10) [01:33:01 -5512.946722] SLOW spr round 11 (radius: 15) [01:33:45 -5511.074940] SLOW spr round 12 (radius: 5) [01:34:26 -5510.837210] SLOW spr round 13 (radius: 5) [01:35:01 -5510.835097] SLOW spr round 14 (radius: 10) [01:35:38 -5510.835014] SLOW spr round 15 (radius: 15) [01:36:22 -5510.835012] SLOW spr round 16 (radius: 20) [01:37:17 -5508.809526] SLOW spr round 17 (radius: 5) [01:37:59 -5508.809499] SLOW spr round 18 (radius: 10) [01:38:38 -5508.305656] SLOW spr round 19 (radius: 5) [01:39:15 -5508.305654] SLOW spr round 20 (radius: 10) [01:39:51 -5508.305654] SLOW spr round 21 (radius: 15) [01:40:35 -5508.305654] SLOW spr round 22 (radius: 20) [01:41:30 -5508.305654] SLOW spr round 23 (radius: 25) [01:42:29 -5499.622451] SLOW spr round 24 (radius: 5) [01:43:12 -5445.158070] SLOW spr round 25 (radius: 5) [01:43:49 -5445.157859] SLOW spr round 26 (radius: 10) [01:44:25 -5445.157824] SLOW spr round 27 (radius: 15) [01:45:09 -5403.546622] SLOW spr round 28 (radius: 5) [01:45:50 -5399.525394] SLOW spr round 29 (radius: 5) [01:46:26 -5399.525309] SLOW spr round 30 (radius: 10) [01:47:02 -5399.525301] SLOW spr round 31 (radius: 15) [01:47:45 -5399.525300] SLOW spr round 32 (radius: 20) [01:48:40 -5399.525299] SLOW spr round 33 (radius: 25) [01:49:39 -5399.525299] Model parameter optimization (eps = 0.100000) [01:49:44] ML tree search #4, logLikelihood: -5399.247315 [01:49:44 -30545.645523] Initial branch length optimization [01:49:45 -24392.008425] Model parameter optimization (eps = 10.000000) [01:49:56 -24172.976762] AUTODETECT spr round 1 (radius: 5) [01:50:33 -16111.047875] AUTODETECT spr round 2 (radius: 10) [01:51:11 -10812.714261] AUTODETECT spr round 3 (radius: 15) [01:51:53 -8854.075300] AUTODETECT spr round 4 (radius: 20) [01:52:41 -7647.113788] AUTODETECT spr round 5 (radius: 25) [01:53:31 -6898.784152] SPR radius for FAST iterations: 25 (autodetect) [01:53:31 -6898.784152] Model parameter optimization (eps = 3.000000) [01:53:40 -6873.909879] FAST spr round 1 (radius: 25) [01:54:17 -5652.711134] FAST spr round 2 (radius: 25) [01:54:52 -5554.394269] FAST spr round 3 (radius: 25) [01:55:25 -5551.793684] FAST spr round 4 (radius: 25) [01:55:57 -5551.793149] Model parameter optimization (eps = 1.000000) [01:56:06 -5550.703553] SLOW spr round 1 (radius: 5) [01:56:41 -5549.121788] SLOW spr round 2 (radius: 5) [01:57:15 -5549.120370] SLOW spr round 3 (radius: 10) [01:57:51 -5537.038662] SLOW spr round 4 (radius: 5) [01:58:30 -5532.052538] SLOW spr round 5 (radius: 5) [01:59:05 -5524.759340] SLOW spr round 6 (radius: 5) [01:59:39 -5522.067650] SLOW spr round 7 (radius: 5) [02:00:13 -5522.067059] SLOW spr round 8 (radius: 10) [02:00:49 -5521.723016] SLOW spr round 9 (radius: 5) [02:01:26 -5520.941834] SLOW spr round 10 (radius: 5) [02:02:01 -5520.941697] SLOW spr round 11 (radius: 10) [02:02:37 -5518.882647] SLOW spr round 12 (radius: 5) [02:03:14 -5518.514003] SLOW spr round 13 (radius: 5) [02:03:49 -5518.513982] SLOW spr round 14 (radius: 10) [02:04:25 -5518.513978] SLOW spr round 15 (radius: 15) [02:05:11 -5513.419006] SLOW spr round 16 (radius: 5) [02:05:51 -5513.385741] SLOW spr round 17 (radius: 10) [02:06:29 -5513.385529] SLOW spr round 18 (radius: 15) [02:07:14 -5513.385482] SLOW spr round 19 (radius: 20) [02:08:06 -5501.952138] SLOW spr round 20 (radius: 5) [02:08:48 -5501.950403] SLOW spr round 21 (radius: 10) [02:09:27 -5501.795079] SLOW spr round 22 (radius: 5) [02:10:05 -5501.793592] SLOW spr round 23 (radius: 10) [02:10:42 -5501.793524] SLOW spr round 24 (radius: 15) [02:11:26 -5501.793517] SLOW spr round 25 (radius: 20) [02:12:19 -5499.719054] SLOW spr round 26 (radius: 5) [02:13:00 -5499.715878] SLOW spr round 27 (radius: 10) [02:13:39 -5499.715873] SLOW spr round 28 (radius: 15) [02:14:24 -5499.715873] SLOW spr round 29 (radius: 20) [02:15:16 -5499.715873] SLOW spr round 30 (radius: 25) [02:16:15 -5437.582878] SLOW spr round 31 (radius: 5) [02:16:59 -5343.722696] SLOW spr round 32 (radius: 5) [02:17:38 -5317.710206] SLOW spr round 33 (radius: 5) [02:18:13 -5317.584551] SLOW spr round 34 (radius: 5) [02:18:47 -5317.582257] SLOW spr round 35 (radius: 10) [02:19:24 -5312.477103] SLOW spr round 36 (radius: 5) [02:20:01 -5312.477084] SLOW spr round 37 (radius: 10) [02:20:38 -5312.477082] SLOW spr round 38 (radius: 15) [02:21:23 -5305.664022] SLOW spr round 39 (radius: 5) [02:22:04 -5263.910868] SLOW spr round 40 (radius: 5) [02:22:40 -5263.366403] SLOW spr round 41 (radius: 5) [02:23:14 -5263.366395] SLOW spr round 42 (radius: 10) [02:23:50 -5263.366395] SLOW spr round 43 (radius: 15) [02:24:34 -5262.818105] SLOW spr round 44 (radius: 5) [02:25:14 -5262.818105] SLOW spr round 45 (radius: 10) [02:25:51 -5257.557812] SLOW spr round 46 (radius: 5) [02:26:28 -5257.557765] SLOW spr round 47 (radius: 10) [02:27:05 -5257.557765] SLOW spr round 48 (radius: 15) [02:27:49 -5257.557765] SLOW spr round 49 (radius: 20) [02:28:43 -5256.534554] SLOW spr round 50 (radius: 5) [02:29:24 -5256.534512] SLOW spr round 51 (radius: 10) [02:30:03 -5256.534512] SLOW spr round 52 (radius: 15) [02:30:47 -5256.534512] SLOW spr round 53 (radius: 20) [02:31:41 -5256.534512] SLOW spr round 54 (radius: 25) [02:32:40 -5256.534512] Model parameter optimization (eps = 0.100000) [02:32:45] ML tree search #5, logLikelihood: -5256.348135 [02:32:45 -30679.172530] Initial branch length optimization [02:32:46 -24198.179602] Model parameter optimization (eps = 10.000000) [02:32:59 -23975.324344] AUTODETECT spr round 1 (radius: 5) [02:33:36 -15823.834639] AUTODETECT spr round 2 (radius: 10) [02:34:14 -11326.436953] AUTODETECT spr round 3 (radius: 15) [02:34:57 -8008.010821] AUTODETECT spr round 4 (radius: 20) [02:35:43 -7347.658198] AUTODETECT spr round 5 (radius: 25) [02:36:36 -6759.170432] SPR radius for FAST iterations: 25 (autodetect) [02:36:36 -6759.170432] Model parameter optimization (eps = 3.000000) [02:36:46 -6731.351996] FAST spr round 1 (radius: 25) [02:37:22 -5337.369086] FAST spr round 2 (radius: 25) [02:37:56 -5202.821853] FAST spr round 3 (radius: 25) [02:38:29 -5177.943889] FAST spr round 4 (radius: 25) [02:39:01 -5175.344913] FAST spr round 5 (radius: 25) [02:39:33 -5175.343432] Model parameter optimization (eps = 1.000000) [02:39:37 -5174.853326] SLOW spr round 1 (radius: 5) [02:40:12 -5162.080641] SLOW spr round 2 (radius: 5) [02:40:46 -5162.079999] SLOW spr round 3 (radius: 10) [02:41:22 -5161.409064] SLOW spr round 4 (radius: 5) [02:42:01 -5158.241671] SLOW spr round 5 (radius: 5) [02:42:36 -5157.681544] SLOW spr round 6 (radius: 5) [02:43:10 -5157.681380] SLOW spr round 7 (radius: 10) [02:43:46 -5157.681329] SLOW spr round 8 (radius: 15) [02:44:30 -5132.802435] SLOW spr round 9 (radius: 5) [02:45:13 -5115.448456] SLOW spr round 10 (radius: 5) [02:45:50 -5099.233219] SLOW spr round 11 (radius: 5) [02:46:25 -5099.230922] SLOW spr round 12 (radius: 10) [02:47:01 -5099.230628] SLOW spr round 13 (radius: 15) [02:47:45 -5096.585992] SLOW spr round 14 (radius: 5) [02:48:26 -5096.083775] SLOW spr round 15 (radius: 5) [02:49:01 -5096.082033] SLOW spr round 16 (radius: 10) [02:49:37 -5096.081755] SLOW spr round 17 (radius: 15) [02:50:20 -5096.081709] SLOW spr round 18 (radius: 20) [02:51:14 -5095.953790] SLOW spr round 19 (radius: 5) [02:51:55 -5095.953789] SLOW spr round 20 (radius: 10) [02:52:33 -5093.520368] SLOW spr round 21 (radius: 5) [02:53:11 -5093.520368] SLOW spr round 22 (radius: 10) [02:53:47 -5093.520368] SLOW spr round 23 (radius: 15) [02:54:30 -5093.520368] SLOW spr round 24 (radius: 20) [02:55:23 -5093.520368] SLOW spr round 25 (radius: 25) [02:56:21 -5087.824165] SLOW spr round 26 (radius: 5) [02:57:04 -5085.163177] SLOW spr round 27 (radius: 5) [02:57:40 -5085.163157] SLOW spr round 28 (radius: 10) [02:58:16 -5085.163150] SLOW spr round 29 (radius: 15) [02:59:01 -5084.012391] SLOW spr round 30 (radius: 5) [02:59:42 -5080.566936] SLOW spr round 31 (radius: 5) [03:00:18 -5080.564915] SLOW spr round 32 (radius: 10) [03:00:54 -5080.564749] SLOW spr round 33 (radius: 15) [03:01:37 -5080.564737] SLOW spr round 34 (radius: 20) [03:02:31 -5080.564736] SLOW spr round 35 (radius: 25) [03:03:31 -5080.564736] Model parameter optimization (eps = 0.100000) [03:03:35] ML tree search #6, logLikelihood: -5080.335314 [03:03:35 -30391.294177] Initial branch length optimization [03:03:36 -24217.386037] Model parameter optimization (eps = 10.000000) [03:03:51 -23996.811121] AUTODETECT spr round 1 (radius: 5) [03:04:27 -15764.586425] AUTODETECT spr round 2 (radius: 10) [03:05:05 -11367.394453] AUTODETECT spr round 3 (radius: 15) [03:05:45 -9326.685136] AUTODETECT spr round 4 (radius: 20) [03:06:30 -8261.127365] AUTODETECT spr round 5 (radius: 25) [03:07:16 -7609.046877] SPR radius for FAST iterations: 25 (autodetect) [03:07:16 -7609.046877] Model parameter optimization (eps = 3.000000) [03:07:25 -7596.004345] FAST spr round 1 (radius: 25) [03:08:03 -6193.718857] FAST spr round 2 (radius: 25) [03:08:37 -5894.738042] FAST spr round 3 (radius: 25) [03:09:10 -5852.699005] FAST spr round 4 (radius: 25) [03:09:42 -5852.698707] Model parameter optimization (eps = 1.000000) [03:09:49 -5850.217316] SLOW spr round 1 (radius: 5) [03:10:25 -5847.935017] SLOW spr round 2 (radius: 5) [03:11:00 -5847.812661] SLOW spr round 3 (radius: 5) [03:11:34 -5847.811775] SLOW spr round 4 (radius: 10) [03:12:10 -5845.514062] SLOW spr round 5 (radius: 5) [03:12:50 -5843.203325] SLOW spr round 6 (radius: 5) [03:13:26 -5843.203233] SLOW spr round 7 (radius: 10) [03:14:02 -5843.203231] SLOW spr round 8 (radius: 15) [03:14:46 -5833.583140] SLOW spr round 9 (radius: 5) [03:15:28 -5833.115072] SLOW spr round 10 (radius: 5) [03:16:04 -5831.842355] SLOW spr round 11 (radius: 5) [03:16:38 -5831.841945] SLOW spr round 12 (radius: 10) [03:17:14 -5831.841942] SLOW spr round 13 (radius: 15) [03:17:57 -5830.288877] SLOW spr round 14 (radius: 5) [03:18:38 -5830.283884] SLOW spr round 15 (radius: 10) [03:19:14 -5830.283475] SLOW spr round 16 (radius: 15) [03:19:57 -5830.283378] SLOW spr round 17 (radius: 20) [03:20:48 -5825.386471] SLOW spr round 18 (radius: 5) [03:21:30 -5706.491957] SLOW spr round 19 (radius: 5) [03:22:08 -5563.773509] SLOW spr round 20 (radius: 5) [03:22:43 -5489.179711] SLOW spr round 21 (radius: 5) [03:23:19 -5438.105471] SLOW spr round 22 (radius: 5) [03:23:53 -5438.060490] SLOW spr round 23 (radius: 10) [03:24:29 -5438.060326] SLOW spr round 24 (radius: 15) [03:25:13 -5313.458398] SLOW spr round 25 (radius: 5) [03:25:54 -5261.157237] SLOW spr round 26 (radius: 5) [03:26:30 -5260.354391] SLOW spr round 27 (radius: 5) [03:27:04 -5260.285978] SLOW spr round 28 (radius: 10) [03:27:39 -5260.285969] SLOW spr round 29 (radius: 15) [03:28:22 -5260.285969] SLOW spr round 30 (radius: 20) [03:29:14 -5255.116921] SLOW spr round 31 (radius: 5) [03:29:55 -5255.116359] SLOW spr round 32 (radius: 10) [03:30:32 -5254.765703] SLOW spr round 33 (radius: 5) [03:31:09 -5253.971465] SLOW spr round 34 (radius: 5) [03:31:43 -5253.971454] SLOW spr round 35 (radius: 10) [03:32:18 -5253.971454] SLOW spr round 36 (radius: 15) [03:33:01 -5253.971454] SLOW spr round 37 (radius: 20) [03:33:54 -5253.971454] SLOW spr round 38 (radius: 25) [03:34:52 -5252.950603] SLOW spr round 39 (radius: 5) [03:35:34 -5252.945520] SLOW spr round 40 (radius: 10) [03:36:12 -5252.944184] SLOW spr round 41 (radius: 15) [03:36:55 -5252.943764] SLOW spr round 42 (radius: 20) [03:37:49 -5252.488437] SLOW spr round 43 (radius: 5) [03:38:30 -5252.488237] SLOW spr round 44 (radius: 10) [03:39:07 -5252.488233] SLOW spr round 45 (radius: 15) [03:39:49 -5252.488232] SLOW spr round 46 (radius: 20) [03:40:44 -5252.488232] SLOW spr round 47 (radius: 25) [03:41:42 -5252.488232] Model parameter optimization (eps = 0.100000) [03:41:47] ML tree search #7, logLikelihood: -5252.309435 [03:41:47 -30647.678905] Initial branch length optimization [03:41:47 -24447.307564] Model parameter optimization (eps = 10.000000) [03:42:00 -24202.356364] AUTODETECT spr round 1 (radius: 5) [03:42:36 -15756.973046] AUTODETECT spr round 2 (radius: 10) [03:43:13 -11404.552157] AUTODETECT spr round 3 (radius: 15) [03:43:55 -8967.319077] AUTODETECT spr round 4 (radius: 20) [03:44:40 -7772.414245] AUTODETECT spr round 5 (radius: 25) [03:45:28 -7503.280944] SPR radius for FAST iterations: 25 (autodetect) [03:45:28 -7503.280944] Model parameter optimization (eps = 3.000000) [03:45:37 -7494.892263] FAST spr round 1 (radius: 25) [03:46:14 -6510.795545] FAST spr round 2 (radius: 25) [03:46:47 -6417.835109] FAST spr round 3 (radius: 25) [03:47:20 -6416.079992] FAST spr round 4 (radius: 25) [03:47:52 -6416.079469] Model parameter optimization (eps = 1.000000) [03:47:59 -6414.973045] SLOW spr round 1 (radius: 5) [03:48:34 -6414.074984] SLOW spr round 2 (radius: 5) [03:49:08 -6414.073763] SLOW spr round 3 (radius: 10) [03:49:44 -6414.069837] SLOW spr round 4 (radius: 15) [03:50:28 -6412.799955] SLOW spr round 5 (radius: 5) [03:51:10 -6412.687337] SLOW spr round 6 (radius: 5) [03:51:47 -6412.687144] SLOW spr round 7 (radius: 10) [03:52:22 -6412.687142] SLOW spr round 8 (radius: 15) [03:53:05 -6412.687142] SLOW spr round 9 (radius: 20) [03:53:59 -6339.415649] SLOW spr round 10 (radius: 5) [03:54:42 -6147.340680] SLOW spr round 11 (radius: 5) [03:55:21 -6086.726000] SLOW spr round 12 (radius: 5) [03:55:56 -6072.688980] SLOW spr round 13 (radius: 5) [03:56:30 -6072.688980] SLOW spr round 14 (radius: 10) [03:57:07 -6041.049211] SLOW spr round 15 (radius: 5) [03:57:46 -6032.583329] SLOW spr round 16 (radius: 5) [03:58:21 -6032.583328] SLOW spr round 17 (radius: 10) [03:58:57 -6031.969020] SLOW spr round 18 (radius: 5) [03:59:36 -6031.968986] SLOW spr round 19 (radius: 10) [04:00:13 -6026.291572] SLOW spr round 20 (radius: 5) [04:00:51 -6026.291572] SLOW spr round 21 (radius: 10) [04:01:27 -6026.291572] SLOW spr round 22 (radius: 15) [04:02:11 -5984.665298] SLOW spr round 23 (radius: 5) [04:02:52 -5984.567024] SLOW spr round 24 (radius: 10) [04:03:30 -5977.874240] SLOW spr round 25 (radius: 5) [04:04:10 -5976.676411] SLOW spr round 26 (radius: 5) [04:04:45 -5976.676114] SLOW spr round 27 (radius: 10) [04:05:21 -5976.676083] SLOW spr round 28 (radius: 15) [04:06:03 -5976.676079] SLOW spr round 29 (radius: 20) [04:06:55 -5976.676078] SLOW spr round 30 (radius: 25) [04:07:51 -5976.208812] SLOW spr round 31 (radius: 5) [04:08:33 -5976.208646] SLOW spr round 32 (radius: 10) [04:09:12 -5976.135461] SLOW spr round 33 (radius: 15) [04:09:54 -5976.134965] SLOW spr round 34 (radius: 20) [04:10:46 -5976.134949] SLOW spr round 35 (radius: 25) [04:11:41 -5976.134949] Model parameter optimization (eps = 0.100000) [04:11:45] ML tree search #8, logLikelihood: -5976.085568 [04:11:45 -30144.689846] Initial branch length optimization [04:11:45 -24097.504143] Model parameter optimization (eps = 10.000000) [04:11:57 -23887.346029] AUTODETECT spr round 1 (radius: 5) [04:12:33 -15963.226451] AUTODETECT spr round 2 (radius: 10) [04:13:10 -11753.350885] AUTODETECT spr round 3 (radius: 15) [04:13:53 -8918.131553] AUTODETECT spr round 4 (radius: 20) [04:14:39 -7684.532616] AUTODETECT spr round 5 (radius: 25) [04:15:27 -6881.024988] SPR radius for FAST iterations: 25 (autodetect) [04:15:27 -6881.024988] Model parameter optimization (eps = 3.000000) [04:15:36 -6869.067986] FAST spr round 1 (radius: 25) [04:16:14 -5604.878403] FAST spr round 2 (radius: 25) [04:16:49 -5437.938353] FAST spr round 3 (radius: 25) [04:17:22 -5424.313386] FAST spr round 4 (radius: 25) [04:17:54 -5423.851178] FAST spr round 5 (radius: 25) [04:18:26 -5423.850777] Model parameter optimization (eps = 1.000000) [04:18:38 -5422.260039] SLOW spr round 1 (radius: 5) [04:19:12 -5421.285820] SLOW spr round 2 (radius: 5) [04:19:47 -5421.111855] SLOW spr round 3 (radius: 5) [04:20:20 -5421.111694] SLOW spr round 4 (radius: 10) [04:20:56 -5413.762350] SLOW spr round 5 (radius: 5) [04:21:35 -5408.940389] SLOW spr round 6 (radius: 5) [04:22:10 -5408.937213] SLOW spr round 7 (radius: 10) [04:22:45 -5408.667522] SLOW spr round 8 (radius: 5) [04:23:22 -5408.667475] SLOW spr round 9 (radius: 10) [04:23:57 -5408.667475] SLOW spr round 10 (radius: 15) [04:24:40 -5397.082687] SLOW spr round 11 (radius: 5) [04:25:21 -5307.011951] SLOW spr round 12 (radius: 5) [04:25:59 -5302.133733] SLOW spr round 13 (radius: 5) [04:26:34 -5302.124866] SLOW spr round 14 (radius: 10) [04:27:09 -5302.124303] SLOW spr round 15 (radius: 15) [04:27:52 -5300.560535] SLOW spr round 16 (radius: 5) [04:28:33 -5296.336939] SLOW spr round 17 (radius: 5) [04:29:09 -5296.335484] SLOW spr round 18 (radius: 10) [04:29:44 -5296.335136] SLOW spr round 19 (radius: 15) [04:30:25 -5296.335050] SLOW spr round 20 (radius: 20) [04:31:17 -5288.609722] SLOW spr round 21 (radius: 5) [04:31:58 -5285.930408] SLOW spr round 22 (radius: 5) [04:32:35 -5285.930335] SLOW spr round 23 (radius: 10) [04:33:11 -5285.930321] SLOW spr round 24 (radius: 15) [04:33:52 -5284.800020] SLOW spr round 25 (radius: 5) [04:34:32 -5284.798464] SLOW spr round 26 (radius: 10) [04:35:08 -5284.798394] SLOW spr round 27 (radius: 15) [04:35:49 -5284.798391] SLOW spr round 28 (radius: 20) [04:36:40 -5284.798391] SLOW spr round 29 (radius: 25) [04:37:35 -5284.798391] Model parameter optimization (eps = 0.100000) [04:37:40] ML tree search #9, logLikelihood: -5284.524930 [04:37:40 -30444.645185] Initial branch length optimization [04:37:41 -24485.718990] Model parameter optimization (eps = 10.000000) [04:37:55 -24253.980502] AUTODETECT spr round 1 (radius: 5) [04:38:31 -15923.693412] AUTODETECT spr round 2 (radius: 10) [04:39:08 -11478.933522] AUTODETECT spr round 3 (radius: 15) [04:39:50 -9303.251627] AUTODETECT spr round 4 (radius: 20) [04:40:36 -7961.972736] AUTODETECT spr round 5 (radius: 25) [04:41:27 -7288.041638] SPR radius for FAST iterations: 25 (autodetect) [04:41:27 -7288.041638] Model parameter optimization (eps = 3.000000) [04:41:36 -7276.038867] FAST spr round 1 (radius: 25) [04:42:16 -5766.207072] FAST spr round 2 (radius: 25) [04:42:52 -5598.299061] FAST spr round 3 (radius: 25) [04:43:25 -5591.722600] FAST spr round 4 (radius: 25) [04:43:57 -5591.361318] FAST spr round 5 (radius: 25) [04:44:29 -5591.357619] Model parameter optimization (eps = 1.000000) [04:44:35 -5588.558285] SLOW spr round 1 (radius: 5) [04:45:10 -5588.046950] SLOW spr round 2 (radius: 5) [04:45:44 -5588.020340] SLOW spr round 3 (radius: 10) [04:46:20 -5588.020248] SLOW spr round 4 (radius: 15) [04:47:07 -5569.495101] SLOW spr round 5 (radius: 5) [04:47:49 -5566.570798] SLOW spr round 6 (radius: 5) [04:48:26 -5564.216008] SLOW spr round 7 (radius: 5) [04:49:00 -5564.215766] SLOW spr round 8 (radius: 10) [04:49:35 -5564.215756] SLOW spr round 9 (radius: 15) [04:50:18 -5561.268549] SLOW spr round 10 (radius: 5) [04:50:58 -5561.268279] SLOW spr round 11 (radius: 10) [04:51:35 -5560.591031] SLOW spr round 12 (radius: 5) [04:52:13 -5560.591030] SLOW spr round 13 (radius: 10) [04:52:49 -5560.591030] SLOW spr round 14 (radius: 15) [04:53:32 -5560.591030] SLOW spr round 15 (radius: 20) [04:54:24 -5560.041959] SLOW spr round 16 (radius: 5) [04:55:06 -5560.041957] SLOW spr round 17 (radius: 10) [04:55:44 -5560.041956] SLOW spr round 18 (radius: 15) [04:56:28 -5560.041954] SLOW spr round 19 (radius: 20) [04:57:21 -5560.041952] SLOW spr round 20 (radius: 25) [04:58:18 -5560.041952] Model parameter optimization (eps = 0.100000) [04:58:24] ML tree search #10, logLikelihood: -5559.832142 [04:58:25 -30375.247963] Initial branch length optimization [04:58:25 -24322.733414] Model parameter optimization (eps = 10.000000) [04:58:36 -24107.486731] AUTODETECT spr round 1 (radius: 5) [04:59:12 -16143.799518] AUTODETECT spr round 2 (radius: 10) [04:59:49 -11515.055444] AUTODETECT spr round 3 (radius: 15) [05:00:33 -9091.650195] AUTODETECT spr round 4 (radius: 20) [05:01:19 -7946.353004] AUTODETECT spr round 5 (radius: 25) [05:02:13 -7150.866352] SPR radius for FAST iterations: 25 (autodetect) [05:02:13 -7150.866352] Model parameter optimization (eps = 3.000000) [05:02:20 -7133.769172] FAST spr round 1 (radius: 25) [05:02:58 -5628.738287] FAST spr round 2 (radius: 25) [05:03:32 -5603.615702] FAST spr round 3 (radius: 25) [05:04:05 -5596.414664] FAST spr round 4 (radius: 25) [05:04:37 -5596.098938] FAST spr round 5 (radius: 25) [05:05:10 -5595.777861] FAST spr round 6 (radius: 25) [05:05:42 -5595.777858] Model parameter optimization (eps = 1.000000) [05:05:48 -5593.904471] SLOW spr round 1 (radius: 5) [05:06:23 -5593.419358] SLOW spr round 2 (radius: 5) [05:06:57 -5593.418898] SLOW spr round 3 (radius: 10) [05:07:33 -5591.333847] SLOW spr round 4 (radius: 5) [05:08:12 -5589.898567] SLOW spr round 5 (radius: 5) [05:08:47 -5589.897296] SLOW spr round 6 (radius: 10) [05:09:22 -5589.897221] SLOW spr round 7 (radius: 15) [05:10:06 -5562.127012] SLOW spr round 8 (radius: 5) [05:10:46 -5558.979275] SLOW spr round 9 (radius: 5) [05:11:22 -5556.882206] SLOW spr round 10 (radius: 5) [05:11:56 -5556.882002] SLOW spr round 11 (radius: 10) [05:12:32 -5556.882000] SLOW spr round 12 (radius: 15) [05:13:14 -5556.882000] SLOW spr round 13 (radius: 20) [05:14:05 -5547.690510] SLOW spr round 14 (radius: 5) [05:14:47 -5546.001208] SLOW spr round 15 (radius: 5) [05:15:24 -5545.951956] SLOW spr round 16 (radius: 10) [05:16:00 -5544.653893] SLOW spr round 17 (radius: 5) [05:16:38 -5544.653854] SLOW spr round 18 (radius: 10) [05:17:14 -5544.653851] SLOW spr round 19 (radius: 15) [05:17:57 -5512.329430] SLOW spr round 20 (radius: 5) [05:18:37 -5511.060297] SLOW spr round 21 (radius: 5) [05:19:14 -5511.060046] SLOW spr round 22 (radius: 10) [05:19:49 -5511.059477] SLOW spr round 23 (radius: 15) [05:20:32 -5511.059459] SLOW spr round 24 (radius: 20) [05:21:25 -5482.026133] SLOW spr round 25 (radius: 5) [05:22:07 -5482.025956] SLOW spr round 26 (radius: 10) [05:22:45 -5482.025910] SLOW spr round 27 (radius: 15) [05:23:27 -5482.025899] SLOW spr round 28 (radius: 20) [05:24:20 -5482.025897] SLOW spr round 29 (radius: 25) [05:25:17 -5481.409374] SLOW spr round 30 (radius: 5) [05:25:58 -5481.409340] SLOW spr round 31 (radius: 10) [05:26:37 -5481.409340] SLOW spr round 32 (radius: 15) [05:27:20 -5481.409340] SLOW spr round 33 (radius: 20) [05:28:12 -5481.409340] SLOW spr round 34 (radius: 25) [05:29:09 -5481.409340] Model parameter optimization (eps = 0.100000) [05:29:12] ML tree search #11, logLikelihood: -5481.330218 [05:29:12 -30559.170183] Initial branch length optimization [05:29:13 -24451.784163] Model parameter optimization (eps = 10.000000) [05:29:23 -24207.316034] AUTODETECT spr round 1 (radius: 5) [05:30:00 -16134.882769] AUTODETECT spr round 2 (radius: 10) [05:30:37 -10916.477329] AUTODETECT spr round 3 (radius: 15) [05:31:18 -8693.542676] AUTODETECT spr round 4 (radius: 20) [05:32:05 -7492.608827] AUTODETECT spr round 5 (radius: 25) [05:32:53 -7164.568102] SPR radius for FAST iterations: 25 (autodetect) [05:32:53 -7164.568102] Model parameter optimization (eps = 3.000000) [05:33:02 -7146.133633] FAST spr round 1 (radius: 25) [05:33:38 -5835.732772] FAST spr round 2 (radius: 25) [05:34:12 -5700.945259] FAST spr round 3 (radius: 25) [05:34:45 -5689.656094] FAST spr round 4 (radius: 25) [05:35:16 -5687.271270] FAST spr round 5 (radius: 25) [05:35:48 -5687.270809] Model parameter optimization (eps = 1.000000) [05:35:51 -5687.190052] SLOW spr round 1 (radius: 5) [05:36:26 -5684.116227] SLOW spr round 2 (radius: 5) [05:36:59 -5684.075237] SLOW spr round 3 (radius: 10) [05:37:35 -5684.071120] SLOW spr round 4 (radius: 15) [05:38:19 -5675.712012] SLOW spr round 5 (radius: 5) [05:39:00 -5673.553208] SLOW spr round 6 (radius: 5) [05:39:36 -5673.553138] SLOW spr round 7 (radius: 10) [05:40:11 -5673.553072] SLOW spr round 8 (radius: 15) [05:40:54 -5673.019332] SLOW spr round 9 (radius: 5) [05:41:35 -5673.019233] SLOW spr round 10 (radius: 10) [05:42:12 -5673.019170] SLOW spr round 11 (radius: 15) [05:42:54 -5673.019108] SLOW spr round 12 (radius: 20) [05:43:48 -5669.687483] SLOW spr round 13 (radius: 5) [05:44:30 -5669.666426] SLOW spr round 14 (radius: 10) [05:45:09 -5669.665636] SLOW spr round 15 (radius: 15) [05:45:51 -5669.274218] SLOW spr round 16 (radius: 5) [05:46:32 -5669.273998] SLOW spr round 17 (radius: 10) [05:47:10 -5669.273978] SLOW spr round 18 (radius: 15) [05:47:53 -5669.273975] SLOW spr round 19 (radius: 20) [05:48:46 -5669.273974] SLOW spr round 20 (radius: 25) [05:49:44 -5669.273974] Model parameter optimization (eps = 0.100000) [05:49:48] ML tree search #12, logLikelihood: -5669.200160 [05:49:48 -30350.074767] Initial branch length optimization [05:49:49 -24101.238719] Model parameter optimization (eps = 10.000000) [05:50:01 -23901.871131] AUTODETECT spr round 1 (radius: 5) [05:50:37 -15929.754663] AUTODETECT spr round 2 (radius: 10) [05:51:14 -11537.082224] AUTODETECT spr round 3 (radius: 15) [05:51:56 -9007.587730] AUTODETECT spr round 4 (radius: 20) [05:52:41 -7620.219307] AUTODETECT spr round 5 (radius: 25) [05:53:27 -7238.385682] SPR radius for FAST iterations: 25 (autodetect) [05:53:27 -7238.385682] Model parameter optimization (eps = 3.000000) [05:53:36 -7216.583946] FAST spr round 1 (radius: 25) [05:54:13 -5833.710237] FAST spr round 2 (radius: 25) [05:54:47 -5723.138051] FAST spr round 3 (radius: 25) [05:55:21 -5712.456337] FAST spr round 4 (radius: 25) [05:55:54 -5710.184229] FAST spr round 5 (radius: 25) [05:56:26 -5710.183903] Model parameter optimization (eps = 1.000000) [05:56:29 -5709.564981] SLOW spr round 1 (radius: 5) [05:57:04 -5709.474955] SLOW spr round 2 (radius: 10) [05:57:40 -5708.733540] SLOW spr round 3 (radius: 5) [05:58:19 -5708.105725] SLOW spr round 4 (radius: 5) [05:58:54 -5708.105537] SLOW spr round 5 (radius: 10) [05:59:30 -5708.105512] SLOW spr round 6 (radius: 15) [06:00:14 -5695.019839] SLOW spr round 7 (radius: 5) [06:00:55 -5692.932389] SLOW spr round 8 (radius: 5) [06:01:31 -5692.932092] SLOW spr round 9 (radius: 10) [06:02:07 -5692.932057] SLOW spr round 10 (radius: 15) [06:02:51 -5691.321243] SLOW spr round 11 (radius: 5) [06:03:31 -5691.320858] SLOW spr round 12 (radius: 10) [06:04:09 -5691.320841] SLOW spr round 13 (radius: 15) [06:04:52 -5691.320837] SLOW spr round 14 (radius: 20) [06:05:47 -5689.875275] SLOW spr round 15 (radius: 5) [06:06:30 -5688.717168] SLOW spr round 16 (radius: 5) [06:07:07 -5688.528100] SLOW spr round 17 (radius: 5) [06:07:41 -5688.526619] SLOW spr round 18 (radius: 10) [06:08:16 -5688.526489] SLOW spr round 19 (radius: 15) [06:09:00 -5688.526479] SLOW spr round 20 (radius: 20) [06:09:52 -5688.492846] SLOW spr round 21 (radius: 25) [06:10:51 -5639.719891] SLOW spr round 22 (radius: 5) [06:11:33 -5633.291197] SLOW spr round 23 (radius: 5) [06:12:10 -5633.290097] SLOW spr round 24 (radius: 10) [06:12:45 -5631.702284] SLOW spr round 25 (radius: 5) [06:13:23 -5631.702250] SLOW spr round 26 (radius: 10) [06:13:59 -5631.702248] SLOW spr round 27 (radius: 15) [06:14:41 -5627.733132] SLOW spr round 28 (radius: 5) [06:15:22 -5601.168794] SLOW spr round 29 (radius: 5) [06:15:58 -5601.168771] SLOW spr round 30 (radius: 10) [06:16:33 -5601.168771] SLOW spr round 31 (radius: 15) [06:17:15 -5601.168771] SLOW spr round 32 (radius: 20) [06:18:08 -5592.931163] SLOW spr round 33 (radius: 5) [06:18:48 -5592.930424] SLOW spr round 34 (radius: 10) [06:19:27 -5590.201100] SLOW spr round 35 (radius: 5) [06:20:06 -5589.597243] SLOW spr round 36 (radius: 5) [06:20:40 -5589.597242] SLOW spr round 37 (radius: 10) [06:21:15 -5589.597242] SLOW spr round 38 (radius: 15) [06:21:57 -5589.597241] SLOW spr round 39 (radius: 20) [06:22:49 -5589.597241] SLOW spr round 40 (radius: 25) [06:23:48 -5588.960055] SLOW spr round 41 (radius: 5) [06:24:30 -5588.960026] SLOW spr round 42 (radius: 10) [06:25:08 -5588.960025] SLOW spr round 43 (radius: 15) [06:25:50 -5588.960025] SLOW spr round 44 (radius: 20) [06:26:43 -5588.960025] SLOW spr round 45 (radius: 25) [06:27:42 -5588.960025] Model parameter optimization (eps = 0.100000) [06:27:48] ML tree search #13, logLikelihood: -5588.528934 [06:27:48 -30225.301825] Initial branch length optimization [06:27:48 -24219.198315] Model parameter optimization (eps = 10.000000) [06:28:03 -24003.664343] AUTODETECT spr round 1 (radius: 5) [06:28:39 -15335.561771] AUTODETECT spr round 2 (radius: 10) [06:29:16 -10789.060254] AUTODETECT spr round 3 (radius: 15) [06:29:58 -8956.654950] AUTODETECT spr round 4 (radius: 20) [06:30:52 -6824.958735] AUTODETECT spr round 5 (radius: 25) [06:31:39 -6629.450670] SPR radius for FAST iterations: 25 (autodetect) [06:31:39 -6629.450670] Model parameter optimization (eps = 3.000000) [06:31:48 -6612.331754] FAST spr round 1 (radius: 25) [06:32:26 -5417.897829] FAST spr round 2 (radius: 25) [06:33:02 -5324.682062] FAST spr round 3 (radius: 25) [06:33:35 -5318.815257] FAST spr round 4 (radius: 25) [06:34:08 -5318.812418] Model parameter optimization (eps = 1.000000) [06:34:15 -5316.551688] SLOW spr round 1 (radius: 5) [06:34:50 -5316.164132] SLOW spr round 2 (radius: 5) [06:35:25 -5316.163007] SLOW spr round 3 (radius: 10) [06:36:01 -5314.434331] SLOW spr round 4 (radius: 5) [06:36:40 -5313.741638] SLOW spr round 5 (radius: 5) [06:37:15 -5313.741121] SLOW spr round 6 (radius: 10) [06:37:50 -5313.741118] SLOW spr round 7 (radius: 15) [06:38:34 -5312.061195] SLOW spr round 8 (radius: 5) [06:39:15 -5310.895000] SLOW spr round 9 (radius: 5) [06:39:52 -5310.893148] SLOW spr round 10 (radius: 10) [06:40:27 -5310.892661] SLOW spr round 11 (radius: 15) [06:41:10 -5310.892507] SLOW spr round 12 (radius: 20) [06:42:07 -5242.038317] SLOW spr round 13 (radius: 5) [06:42:51 -5189.989364] SLOW spr round 14 (radius: 5) [06:43:29 -5186.757769] SLOW spr round 15 (radius: 5) [06:44:03 -5186.757289] SLOW spr round 16 (radius: 10) [06:44:39 -5175.410577] SLOW spr round 17 (radius: 5) [06:45:18 -5172.007692] SLOW spr round 18 (radius: 5) [06:45:53 -5172.007691] SLOW spr round 19 (radius: 10) [06:46:29 -5172.007691] SLOW spr round 20 (radius: 15) [06:47:12 -5167.300688] SLOW spr round 21 (radius: 5) [06:47:52 -5167.299748] SLOW spr round 22 (radius: 10) [06:48:30 -5167.088015] SLOW spr round 23 (radius: 5) [06:49:08 -5161.805135] SLOW spr round 24 (radius: 5) [06:49:43 -5161.805130] SLOW spr round 25 (radius: 10) [06:50:19 -5161.805130] SLOW spr round 26 (radius: 15) [06:51:02 -5161.805130] SLOW spr round 27 (radius: 20) [06:51:57 -5161.805130] SLOW spr round 28 (radius: 25) [06:53:00 -5161.805130] Model parameter optimization (eps = 0.100000) [06:53:05] ML tree search #14, logLikelihood: -5161.252864 [06:53:05 -30397.887473] Initial branch length optimization [06:53:06 -24295.740851] Model parameter optimization (eps = 10.000000) [06:53:18 -24085.606336] AUTODETECT spr round 1 (radius: 5) [06:53:54 -16525.760756] AUTODETECT spr round 2 (radius: 10) [06:54:31 -11543.413001] AUTODETECT spr round 3 (radius: 15) [06:55:11 -9142.602013] AUTODETECT spr round 4 (radius: 20) [06:55:56 -7493.834542] AUTODETECT spr round 5 (radius: 25) [06:56:44 -6681.458842] SPR radius for FAST iterations: 25 (autodetect) [06:56:44 -6681.458842] Model parameter optimization (eps = 3.000000) [06:56:52 -6672.670294] FAST spr round 1 (radius: 25) [06:57:30 -5680.571705] FAST spr round 2 (radius: 25) [06:58:04 -5623.401329] FAST spr round 3 (radius: 25) [06:58:38 -5618.658872] FAST spr round 4 (radius: 25) [06:59:12 -5617.415587] FAST spr round 5 (radius: 25) [06:59:44 -5617.414807] Model parameter optimization (eps = 1.000000) [06:59:49 -5616.658149] SLOW spr round 1 (radius: 5) [07:00:24 -5615.429947] SLOW spr round 2 (radius: 5) [07:00:59 -5615.428645] SLOW spr round 3 (radius: 10) [07:01:37 -5611.524724] SLOW spr round 4 (radius: 5) [07:02:16 -5608.124706] SLOW spr round 5 (radius: 5) [07:02:52 -5607.280299] SLOW spr round 6 (radius: 5) [07:03:27 -5607.280044] SLOW spr round 7 (radius: 10) [07:04:05 -5606.573071] SLOW spr round 8 (radius: 5) [07:04:43 -5606.572557] SLOW spr round 9 (radius: 10) [07:05:21 -5605.478476] SLOW spr round 10 (radius: 5) [07:05:59 -5605.321444] SLOW spr round 11 (radius: 5) [07:06:34 -5605.321435] SLOW spr round 12 (radius: 10) [07:07:12 -5605.321366] SLOW spr round 13 (radius: 15) [07:07:58 -5602.518888] SLOW spr round 14 (radius: 5) [07:08:39 -5602.518574] SLOW spr round 15 (radius: 10) [07:09:17 -5602.419363] SLOW spr round 16 (radius: 15) [07:10:02 -5602.419332] SLOW spr round 17 (radius: 20) [07:10:57 -5596.972537] SLOW spr round 18 (radius: 5) [07:11:39 -5596.803111] SLOW spr round 19 (radius: 5) [07:12:15 -5596.802504] SLOW spr round 20 (radius: 10) [07:12:51 -5596.802502] SLOW spr round 21 (radius: 15) [07:13:35 -5594.990643] SLOW spr round 22 (radius: 5) [07:14:15 -5594.986325] SLOW spr round 23 (radius: 10) [07:14:52 -5594.986290] SLOW spr round 24 (radius: 15) [07:15:36 -5594.986289] SLOW spr round 25 (radius: 20) [07:16:32 -5594.205362] SLOW spr round 26 (radius: 5) [07:17:13 -5594.205316] SLOW spr round 27 (radius: 10) [07:17:51 -5594.205315] SLOW spr round 28 (radius: 15) [07:18:34 -5594.205315] SLOW spr round 29 (radius: 20) [07:19:30 -5594.205315] SLOW spr round 30 (radius: 25) [07:20:31 -5594.022473] SLOW spr round 31 (radius: 5) [07:21:13 -5593.537365] SLOW spr round 32 (radius: 5) [07:21:50 -5593.537302] SLOW spr round 33 (radius: 10) [07:22:26 -5593.085109] SLOW spr round 34 (radius: 5) [07:23:04 -5593.085074] SLOW spr round 35 (radius: 10) [07:23:40 -5593.085073] SLOW spr round 36 (radius: 15) [07:24:24 -5593.085072] SLOW spr round 37 (radius: 20) [07:25:20 -5593.085072] SLOW spr round 38 (radius: 25) [07:26:20 -5593.085072] Model parameter optimization (eps = 0.100000) [07:26:24] ML tree search #15, logLikelihood: -5593.025791 [07:26:24 -30528.972496] Initial branch length optimization [07:26:24 -24406.233152] Model parameter optimization (eps = 10.000000) [07:26:34 -24164.431132] AUTODETECT spr round 1 (radius: 5) [07:27:11 -15792.916401] AUTODETECT spr round 2 (radius: 10) [07:27:49 -11900.039132] AUTODETECT spr round 3 (radius: 15) [07:28:33 -9383.568521] AUTODETECT spr round 4 (radius: 20) [07:29:20 -7860.879184] AUTODETECT spr round 5 (radius: 25) [07:30:13 -7059.623282] SPR radius for FAST iterations: 25 (autodetect) [07:30:13 -7059.623282] Model parameter optimization (eps = 3.000000) [07:30:22 -7034.473284] FAST spr round 1 (radius: 25) [07:31:00 -5620.575273] FAST spr round 2 (radius: 25) [07:31:35 -5535.833550] FAST spr round 3 (radius: 25) [07:32:09 -5528.178187] FAST spr round 4 (radius: 25) [07:32:41 -5523.037405] FAST spr round 5 (radius: 25) [07:33:13 -5523.037164] Model parameter optimization (eps = 1.000000) [07:33:19 -5521.534063] SLOW spr round 1 (radius: 5) [07:33:54 -5520.961403] SLOW spr round 2 (radius: 5) [07:34:29 -5520.960870] SLOW spr round 3 (radius: 10) [07:35:04 -5520.101079] SLOW spr round 4 (radius: 5) [07:35:45 -5515.701745] SLOW spr round 5 (radius: 5) [07:36:21 -5515.477966] SLOW spr round 6 (radius: 5) [07:36:55 -5515.476905] SLOW spr round 7 (radius: 10) [07:37:31 -5515.476533] SLOW spr round 8 (radius: 15) [07:38:13 -5512.817587] SLOW spr round 9 (radius: 5) [07:38:55 -5512.816661] SLOW spr round 10 (radius: 10) [07:39:32 -5511.629505] SLOW spr round 11 (radius: 5) [07:40:11 -5511.629500] SLOW spr round 12 (radius: 10) [07:40:47 -5511.629499] SLOW spr round 13 (radius: 15) [07:41:29 -5511.629498] SLOW spr round 14 (radius: 20) [07:42:18 -5510.974143] SLOW spr round 15 (radius: 5) [07:43:01 -5510.554119] SLOW spr round 16 (radius: 5) [07:43:38 -5510.553893] SLOW spr round 17 (radius: 10) [07:44:14 -5510.553888] SLOW spr round 18 (radius: 15) [07:44:56 -5510.553888] SLOW spr round 19 (radius: 20) [07:45:45 -5510.553888] SLOW spr round 20 (radius: 25) [07:46:37 -5510.553882] Model parameter optimization (eps = 0.100000) [07:46:41] ML tree search #16, logLikelihood: -5510.512236 [07:46:41 -30307.572515] Initial branch length optimization [07:46:41 -24319.475465] Model parameter optimization (eps = 10.000000) [07:46:55 -24118.388876] AUTODETECT spr round 1 (radius: 5) [07:47:32 -16228.344217] AUTODETECT spr round 2 (radius: 10) [07:48:10 -11945.539237] AUTODETECT spr round 3 (radius: 15) [07:48:54 -9170.948810] AUTODETECT spr round 4 (radius: 20) [07:49:44 -8031.506317] AUTODETECT spr round 5 (radius: 25) [07:50:39 -7129.058449] SPR radius for FAST iterations: 25 (autodetect) [07:50:39 -7129.058449] Model parameter optimization (eps = 3.000000) [07:50:50 -7074.228578] FAST spr round 1 (radius: 25) [07:51:28 -5453.956429] FAST spr round 2 (radius: 25) [07:52:02 -5270.635630] FAST spr round 3 (radius: 25) [07:52:35 -5268.755215] FAST spr round 4 (radius: 25) [07:53:08 -5268.207912] FAST spr round 5 (radius: 25) [07:53:41 -5268.206854] Model parameter optimization (eps = 1.000000) [07:53:46 -5267.238710] SLOW spr round 1 (radius: 5) [07:54:21 -5266.117031] SLOW spr round 2 (radius: 5) [07:54:57 -5249.003987] SLOW spr round 3 (radius: 5) [07:55:32 -5248.861032] SLOW spr round 4 (radius: 5) [07:56:05 -5247.872136] SLOW spr round 5 (radius: 5) [07:56:39 -5245.869373] SLOW spr round 6 (radius: 5) [07:57:13 -5245.869137] SLOW spr round 7 (radius: 10) [07:57:51 -5245.865268] SLOW spr round 8 (radius: 15) [07:58:39 -5204.502040] SLOW spr round 9 (radius: 5) [07:59:21 -5179.934695] SLOW spr round 10 (radius: 5) [07:59:58 -5179.754203] SLOW spr round 11 (radius: 5) [08:00:33 -5179.754128] SLOW spr round 12 (radius: 10) [08:01:09 -5179.754088] SLOW spr round 13 (radius: 15) [08:01:54 -5179.754060] SLOW spr round 14 (radius: 20) [08:02:51 -5178.656707] SLOW spr round 15 (radius: 5) [08:03:33 -5178.656639] SLOW spr round 16 (radius: 10) [08:04:12 -5178.656632] SLOW spr round 17 (radius: 15) [08:04:56 -5178.656621] SLOW spr round 18 (radius: 20) [08:05:52 -5178.656621] SLOW spr round 19 (radius: 25) [08:06:57 -5172.662401] SLOW spr round 20 (radius: 5) [08:07:39 -5172.226047] SLOW spr round 21 (radius: 5) [08:08:17 -5172.225632] SLOW spr round 22 (radius: 10) [08:08:53 -5172.225621] SLOW spr round 23 (radius: 15) [08:09:37 -5171.276849] SLOW spr round 24 (radius: 5) [08:10:19 -5169.270264] SLOW spr round 25 (radius: 5) [08:10:54 -5169.269810] SLOW spr round 26 (radius: 10) [08:11:30 -5169.269804] SLOW spr round 27 (radius: 15) [08:12:14 -5169.269800] SLOW spr round 28 (radius: 20) [08:13:09 -5168.707268] SLOW spr round 29 (radius: 5) [08:13:50 -5168.707267] SLOW spr round 30 (radius: 10) [08:14:29 -5168.707267] SLOW spr round 31 (radius: 15) [08:15:12 -5168.707267] SLOW spr round 32 (radius: 20) [08:16:08 -5168.707267] SLOW spr round 33 (radius: 25) [08:17:12 -5168.707267] Model parameter optimization (eps = 0.100000) [08:17:16] ML tree search #17, logLikelihood: -5168.637657 [08:17:16 -30826.681215] Initial branch length optimization [08:17:17 -24730.390332] Model parameter optimization (eps = 10.000000) [08:17:29 -24504.938758] AUTODETECT spr round 1 (radius: 5) [08:18:06 -15722.450149] AUTODETECT spr round 2 (radius: 10) [08:18:44 -11540.454594] AUTODETECT spr round 3 (radius: 15) [08:19:26 -8673.802986] AUTODETECT spr round 4 (radius: 20) [08:20:14 -6813.567923] AUTODETECT spr round 5 (radius: 25) [08:21:05 -6432.693012] SPR radius for FAST iterations: 25 (autodetect) [08:21:05 -6432.693012] Model parameter optimization (eps = 3.000000) [08:21:15 -6417.652432] FAST spr round 1 (radius: 25) [08:21:52 -5512.388195] FAST spr round 2 (radius: 25) [08:22:29 -5375.028976] FAST spr round 3 (radius: 25) [08:23:02 -5374.139332] FAST spr round 4 (radius: 25) [08:23:34 -5374.139248] Model parameter optimization (eps = 1.000000) [08:23:39 -5373.246583] SLOW spr round 1 (radius: 5) [08:24:14 -5371.837867] SLOW spr round 2 (radius: 5) [08:24:48 -5371.837090] SLOW spr round 3 (radius: 10) [08:25:24 -5370.288968] SLOW spr round 4 (radius: 5) [08:26:01 -5370.288948] SLOW spr round 5 (radius: 10) [08:26:37 -5370.288948] SLOW spr round 6 (radius: 15) [08:27:23 -5369.525791] SLOW spr round 7 (radius: 5) [08:28:03 -5368.414608] SLOW spr round 8 (radius: 5) [08:28:38 -5368.122497] SLOW spr round 9 (radius: 5) [08:29:12 -5368.122495] SLOW spr round 10 (radius: 10) [08:29:48 -5368.122495] SLOW spr round 11 (radius: 15) [08:30:34 -5342.773985] SLOW spr round 12 (radius: 5) [08:31:16 -5316.589658] SLOW spr round 13 (radius: 5) [08:31:53 -5297.444811] SLOW spr round 14 (radius: 5) [08:32:27 -5296.759279] SLOW spr round 15 (radius: 5) [08:33:01 -5296.759209] SLOW spr round 16 (radius: 10) [08:33:37 -5296.759209] SLOW spr round 17 (radius: 15) [08:34:22 -5295.892093] SLOW spr round 18 (radius: 5) [08:35:01 -5295.892093] SLOW spr round 19 (radius: 10) [08:35:38 -5295.759202] SLOW spr round 20 (radius: 5) [08:36:15 -5295.759201] SLOW spr round 21 (radius: 10) [08:36:51 -5295.759201] SLOW spr round 22 (radius: 15) [08:37:36 -5290.253956] SLOW spr round 23 (radius: 5) [08:38:16 -5289.823843] SLOW spr round 24 (radius: 5) [08:38:51 -5289.823835] SLOW spr round 25 (radius: 10) [08:39:27 -5289.823835] SLOW spr round 26 (radius: 15) [08:40:12 -5289.823835] SLOW spr round 27 (radius: 20) [08:41:05 -5288.781472] SLOW spr round 28 (radius: 5) [08:41:45 -5288.779581] SLOW spr round 29 (radius: 10) [08:42:22 -5288.779381] SLOW spr round 30 (radius: 15) [08:43:07 -5288.779357] SLOW spr round 31 (radius: 20) [08:44:01 -5288.779354] SLOW spr round 32 (radius: 25) [08:45:02 -5261.021776] SLOW spr round 33 (radius: 5) [08:45:45 -5239.677995] SLOW spr round 34 (radius: 5) [08:46:23 -5231.025091] SLOW spr round 35 (radius: 5) [08:46:57 -5226.430572] SLOW spr round 36 (radius: 5) [08:47:31 -5219.503610] SLOW spr round 37 (radius: 5) [08:48:05 -5219.503563] SLOW spr round 38 (radius: 10) [08:48:40 -5219.503562] SLOW spr round 39 (radius: 15) [08:49:26 -5216.831027] SLOW spr round 40 (radius: 5) [08:50:05 -5215.602487] SLOW spr round 41 (radius: 5) [08:50:40 -5215.602487] SLOW spr round 42 (radius: 10) [08:51:16 -5215.602487] SLOW spr round 43 (radius: 15) [08:52:01 -5215.602487] SLOW spr round 44 (radius: 20) [08:52:54 -5215.602487] SLOW spr round 45 (radius: 25) [08:53:53 -5215.602487] Model parameter optimization (eps = 0.100000) [08:53:59] ML tree search #18, logLikelihood: -5214.509128 [08:53:59 -30461.971479] Initial branch length optimization [08:54:00 -24517.017134] Model parameter optimization (eps = 10.000000) [08:54:11 -24296.745250] AUTODETECT spr round 1 (radius: 5) [08:54:47 -16168.228489] AUTODETECT spr round 2 (radius: 10) [08:55:25 -11777.075744] AUTODETECT spr round 3 (radius: 15) [08:56:05 -9642.863671] AUTODETECT spr round 4 (radius: 20) [08:56:53 -7879.959324] AUTODETECT spr round 5 (radius: 25) [08:57:44 -6985.171213] SPR radius for FAST iterations: 25 (autodetect) [08:57:44 -6985.171213] Model parameter optimization (eps = 3.000000) [08:57:53 -6965.499748] FAST spr round 1 (radius: 25) [08:58:31 -5310.637943] FAST spr round 2 (radius: 25) [08:59:05 -5228.515989] FAST spr round 3 (radius: 25) [08:59:39 -5213.783531] FAST spr round 4 (radius: 25) [09:00:10 -5213.783467] Model parameter optimization (eps = 1.000000) [09:00:18 -5209.986945] SLOW spr round 1 (radius: 5) [09:00:53 -5208.219081] SLOW spr round 2 (radius: 5) [09:01:27 -5208.217924] SLOW spr round 3 (radius: 10) [09:02:03 -5206.589741] SLOW spr round 4 (radius: 5) [09:02:41 -5205.950885] SLOW spr round 5 (radius: 5) [09:03:16 -5205.656013] SLOW spr round 6 (radius: 5) [09:03:50 -5205.655706] SLOW spr round 7 (radius: 10) [09:04:25 -5203.178111] SLOW spr round 8 (radius: 5) [09:05:03 -5202.954726] SLOW spr round 9 (radius: 5) [09:05:37 -5202.954725] SLOW spr round 10 (radius: 10) [09:06:12 -5202.954725] SLOW spr round 11 (radius: 15) [09:06:55 -5161.421891] SLOW spr round 12 (radius: 5) [09:07:36 -5159.765284] SLOW spr round 13 (radius: 5) [09:08:12 -5159.345906] SLOW spr round 14 (radius: 5) [09:08:46 -5159.341364] SLOW spr round 15 (radius: 10) [09:09:21 -5159.340872] SLOW spr round 16 (radius: 15) [09:10:03 -5156.969740] SLOW spr round 17 (radius: 5) [09:10:43 -5153.164088] SLOW spr round 18 (radius: 5) [09:11:19 -5151.213655] SLOW spr round 19 (radius: 5) [09:11:53 -5151.213463] SLOW spr round 20 (radius: 10) [09:12:28 -5151.213462] SLOW spr round 21 (radius: 15) [09:13:10 -5151.213462] SLOW spr round 22 (radius: 20) [09:14:03 -5150.392838] SLOW spr round 23 (radius: 5) [09:14:43 -5150.392836] SLOW spr round 24 (radius: 10) [09:15:20 -5150.392836] SLOW spr round 25 (radius: 15) [09:16:01 -5150.392836] SLOW spr round 26 (radius: 20) [09:16:55 -5150.392836] SLOW spr round 27 (radius: 25) [09:17:58 -5101.251448] SLOW spr round 28 (radius: 5) [09:18:40 -5075.850077] SLOW spr round 29 (radius: 5) [09:19:17 -5075.849488] SLOW spr round 30 (radius: 10) [09:19:52 -5074.871068] SLOW spr round 31 (radius: 5) [09:20:30 -5074.871052] SLOW spr round 32 (radius: 10) [09:21:05 -5074.871052] SLOW spr round 33 (radius: 15) [09:21:47 -5074.871052] SLOW spr round 34 (radius: 20) [09:22:44 -5074.871052] SLOW spr round 35 (radius: 25) [09:23:53 -5074.871052] Model parameter optimization (eps = 0.100000) [09:23:57] ML tree search #19, logLikelihood: -5074.757347 [09:23:57 -30798.824858] Initial branch length optimization [09:23:58 -24625.999479] Model parameter optimization (eps = 10.000000) [09:24:10 -24409.390059] AUTODETECT spr round 1 (radius: 5) [09:24:45 -15646.185715] AUTODETECT spr round 2 (radius: 10) [09:25:23 -11487.411184] AUTODETECT spr round 3 (radius: 15) [09:26:07 -8528.968825] AUTODETECT spr round 4 (radius: 20) [09:26:54 -7415.388065] AUTODETECT spr round 5 (radius: 25) [09:27:45 -6902.777106] SPR radius for FAST iterations: 25 (autodetect) [09:27:45 -6902.777106] Model parameter optimization (eps = 3.000000) [09:27:54 -6889.688138] FAST spr round 1 (radius: 25) [09:28:33 -5753.997185] FAST spr round 2 (radius: 25) [09:29:08 -5531.263563] FAST spr round 3 (radius: 25) [09:29:42 -5376.790988] FAST spr round 4 (radius: 25) [09:30:16 -5320.435817] FAST spr round 5 (radius: 25) [09:30:49 -5314.896387] FAST spr round 6 (radius: 25) [09:31:21 -5314.895315] Model parameter optimization (eps = 1.000000) [09:31:26 -5314.555040] SLOW spr round 1 (radius: 5) [09:32:01 -5313.638159] SLOW spr round 2 (radius: 5) [09:32:35 -5313.637083] SLOW spr round 3 (radius: 10) [09:33:11 -5312.718073] SLOW spr round 4 (radius: 5) [09:33:50 -5312.334545] SLOW spr round 5 (radius: 5) [09:34:25 -5312.333742] SLOW spr round 6 (radius: 10) [09:35:00 -5312.333689] SLOW spr round 7 (radius: 15) [09:35:44 -5302.499993] SLOW spr round 8 (radius: 5) [09:36:25 -5300.764270] SLOW spr round 9 (radius: 5) [09:37:01 -5300.763023] SLOW spr round 10 (radius: 10) [09:37:37 -5300.762897] SLOW spr round 11 (radius: 15) [09:38:21 -5299.805513] SLOW spr round 12 (radius: 5) [09:39:01 -5299.805466] SLOW spr round 13 (radius: 10) [09:39:38 -5299.805465] SLOW spr round 14 (radius: 15) [09:40:22 -5299.805465] SLOW spr round 15 (radius: 20) [09:41:16 -5291.045350] SLOW spr round 16 (radius: 5) [09:41:58 -5285.351608] SLOW spr round 17 (radius: 5) [09:42:34 -5285.351608] SLOW spr round 18 (radius: 10) [09:43:10 -5285.351598] SLOW spr round 19 (radius: 15) [09:43:53 -5285.351598] SLOW spr round 20 (radius: 20) [09:44:46 -5285.351598] SLOW spr round 21 (radius: 25) [09:45:43 -5285.351598] Model parameter optimization (eps = 0.100000) [09:45:47] ML tree search #20, logLikelihood: -5285.315694 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.327292,0.137231) (0.318325,0.361254) (0.187662,1.308549) (0.166721,3.565977) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -5074.757347 AIC score: 12939.514694 / AICc score: 3907779.514694 / BIC score: 15363.563812 Free parameters (model + branch lengths): 1395 WARNING: Number of free parameters (K=1395) is larger than alignment size (n=42). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TGS1/3_mltree/Q5TGS1.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TGS1/3_mltree/Q5TGS1.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TGS1/3_mltree/Q5TGS1.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q5TGS1/3_mltree/Q5TGS1.raxml.log Analysis started: 01-Jul-2021 10:39:30 / finished: 01-Jul-2021 20:25:18 Elapsed time: 35147.644 seconds