RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 18:17:51 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5T442/2_msa/Q5T442_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5T442/3_mltree/Q5T442.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5T442/4_raxmlng_ancestral/Q5T442 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622647071 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5T442/2_msa/Q5T442_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 439 sites WARNING: Sequences tr_Q8UVE3_Q8UVE3_CHICK_9031 and tr_U3JT30_U3JT30_FICAL_59894 are exactly identical! WARNING: Sequences tr_Q8UVE3_Q8UVE3_CHICK_9031 and tr_R0M753_R0M753_ANAPL_8839 are exactly identical! WARNING: Sequences tr_Q8UVE3_Q8UVE3_CHICK_9031 and tr_A0A2I0MPP5_A0A2I0MPP5_COLLI_8932 are exactly identical! WARNING: Sequences tr_Q8UVE3_Q8UVE3_CHICK_9031 and tr_A0A1V4KFK4_A0A1V4KFK4_PATFA_372326 are exactly identical! WARNING: Sequences tr_Q8UVE3_Q8UVE3_CHICK_9031 and tr_A0A218V7V3_A0A218V7V3_9PASE_299123 are exactly identical! WARNING: Sequences tr_Q8UVE3_Q8UVE3_CHICK_9031 and tr_A0A226NEP6_A0A226NEP6_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q8UVE3_Q8UVE3_CHICK_9031 and tr_A0A226PW15_A0A226PW15_COLVI_9014 are exactly identical! WARNING: Sequences sp_P28229_CXG1_MOUSE_10090 and tr_G3HLL1_G3HLL1_CRIGR_10029 are exactly identical! WARNING: Sequences sp_P28229_CXG1_MOUSE_10090 and sp_A4GG66_CXG1_RAT_10116 are exactly identical! WARNING: Sequences sp_P28229_CXG1_MOUSE_10090 and tr_A0A1U7Q267_A0A1U7Q267_MESAU_10036 are exactly identical! WARNING: Sequences sp_P28229_CXG1_MOUSE_10090 and sp_Q6PYT3_CXG1_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3Y9U0_M3Y9U0_MUSPF_9669 and tr_G1LEY5_G1LEY5_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Y9U0_M3Y9U0_MUSPF_9669 and tr_A0A2U3WJR5_A0A2U3WJR5_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Y9U0_M3Y9U0_MUSPF_9669 and tr_A0A2U3XFW5_A0A2U3XFW5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Y9U0_M3Y9U0_MUSPF_9669 and tr_A0A2Y9IJV7_A0A2Y9IJV7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y9U0_M3Y9U0_MUSPF_9669 and tr_A0A384D163_A0A384D163_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_A0A2I2ZQJ3_A0A2I2ZQJ3_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_A0A2J8UYM8_A0A2J8UYM8_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_H2QD76_H2QD76_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and sp_P36383_CXG1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_F7G5P0_F7G5P0_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_G7PV07_G7PV07_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_A0A096MKN0_A0A096MKN0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_A0A0D9SCE4_A0A0D9SCE4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_A0A2K5KX84_A0A2K5KX84_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_A0A2K6APT8_A0A2K6APT8_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_A0A2K5XTJ5_A0A2K5XTJ5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3GNA1_A0A2I3GNA1_NOMLE_61853 and tr_A0A2R8ZCV4_A0A2R8ZCV4_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3H5Q1_G3H5Q1_CRIGR_10029 and tr_A0A1U7QXH5_A0A1U7QXH5_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3H8J4_G3H8J4_CRIGR_10029 and tr_A0A1U7QV52_A0A1U7QV52_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A2I2ZC67_A0A2I2ZC67_GORGO_9595 and sp_P36382_CXA5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RDV7_G3RDV7_GORGO_9595 and tr_H2QTE9_H2QTE9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3S404_G3S404_GORGO_9595 and tr_H2NMR2_H2NMR2_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3S404_G3S404_GORGO_9595 and tr_H2Q942_H2Q942_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3S404_G3S404_GORGO_9595 and sp_Q9UKL4_CXD2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3S404_G3S404_GORGO_9595 and tr_F7F204_F7F204_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3S404_G3S404_GORGO_9595 and tr_F7H014_F7H014_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3S404_G3S404_GORGO_9595 and tr_G7PAP6_G7PAP6_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3S404_G3S404_GORGO_9595 and tr_A0A0D9R475_A0A0D9R475_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3S404_G3S404_GORGO_9595 and tr_A0A2K5L679_A0A2K5L679_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3S404_G3S404_GORGO_9595 and tr_A0A2K6E2G9_A0A2K6E2G9_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3S404_G3S404_GORGO_9595 and tr_A0A2K6AF19_A0A2K6AF19_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3S404_G3S404_GORGO_9595 and tr_A0A2R8ZQX9_A0A2R8ZQX9_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q8MHW5_CXB2_GORGO_9595 and tr_H2RAA6_H2RAA6_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q8MHW5_CXB2_GORGO_9595 and sp_P29033_CXB2_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q8MHW5_CXB2_GORGO_9595 and tr_A0A2R8ZIA2_A0A2R8ZIA2_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A140T8E4_A0A140T8E4_CANLF_9615 and tr_A0A2I2U189_A0A2I2U189_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A2J8IZT7_A0A2J8IZT7_PANTR_9598 and tr_A0A2R8ZBI8_A0A2R8ZBI8_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7A2N1_F7A2N1_HORSE_9796 and tr_W5QFG4_W5QFG4_SHEEP_9940 are exactly identical! WARNING: Sequences tr_F7A2N1_F7A2N1_HORSE_9796 and tr_A0A287AL56_A0A287AL56_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A3B5QZX4_A0A3B5QZX4_XIPMA_8083 and tr_I3IYR0_I3IYR0_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B5QZX4_A0A3B5QZX4_XIPMA_8083 and tr_A0A2I4CRP9_A0A2I4CRP9_9TELE_52670 are exactly identical! WARNING: Sequences tr_I3MJH3_I3MJH3_ICTTR_43179 and tr_A0A286XZP9_A0A286XZP9_CAVPO_10141 are exactly identical! WARNING: Sequences tr_I3MJH3_I3MJH3_ICTTR_43179 and tr_A0A091DRJ6_A0A091DRJ6_FUKDA_885580 are exactly identical! WARNING: Sequences tr_H2SK18_H2SK18_TAKRU_31033 and tr_H3DA05_H3DA05_TETNG_99883 are exactly identical! WARNING: Sequences tr_H2UIE6_H2UIE6_TAKRU_31033 and tr_Q4RMJ5_Q4RMJ5_TETNG_99883 are exactly identical! WARNING: Sequences tr_F6VTH7_F6VTH7_MACMU_9544 and tr_G7P419_G7P419_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7D0V5_F7D0V5_MACMU_9544 and tr_A0A2K6BDF7_A0A2K6BDF7_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GSB4_F7GSB4_MACMU_9544 and tr_G7NTQ9_G7NTQ9_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7GSB4_F7GSB4_MACMU_9544 and tr_A0A096NXH7_A0A096NXH7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7GSB4_F7GSB4_MACMU_9544 and tr_A0A0D9SDN2_A0A0D9SDN2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7GSB4_F7GSB4_MACMU_9544 and tr_A0A2K5KLQ6_A0A2K5KLQ6_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q8MIT8_CXB2_MACMU_9544 and tr_G7PVU0_G7PVU0_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q8MIT8_CXB2_MACMU_9544 and tr_A0A096NEK9_A0A096NEK9_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q8MIT8_CXB2_MACMU_9544 and tr_A0A2K5KWG7_A0A2K5KWG7_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q8MIT8_CXB2_MACMU_9544 and tr_A0A2K6B8A4_A0A2K6B8A4_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q8MIT8_CXB2_MACMU_9544 and tr_A0A2K5XKN6_A0A2K5XKN6_MANLE_9568 are exactly identical! WARNING: Sequences tr_H0ZNN0_H0ZNN0_TAEGU_59729 and tr_U3KLL1_U3KLL1_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZNN0_H0ZNN0_TAEGU_59729 and tr_A0A091F0I3_A0A091F0I3_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZNN0_H0ZNN0_TAEGU_59729 and tr_A0A091JNA7_A0A091JNA7_EGRGA_188379 are exactly identical! WARNING: Sequences tr_H0ZNN0_H0ZNN0_TAEGU_59729 and tr_A0A093PIW7_A0A093PIW7_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZNN0_H0ZNN0_TAEGU_59729 and tr_A0A087RKV2_A0A087RKV2_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0ZNN0_H0ZNN0_TAEGU_59729 and tr_A0A091X147_A0A091X147_OPIHO_30419 are exactly identical! WARNING: Sequences tr_H0ZNN0_H0ZNN0_TAEGU_59729 and tr_A0A099ZVP1_A0A099ZVP1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_H0ZNN0_H0ZNN0_TAEGU_59729 and tr_A0A2I0MU91_A0A2I0MU91_COLLI_8932 are exactly identical! WARNING: Sequences tr_H0ZNN0_H0ZNN0_TAEGU_59729 and tr_A0A091I4V6_A0A091I4V6_CALAN_9244 are exactly identical! WARNING: Sequences tr_H0ZNN0_H0ZNN0_TAEGU_59729 and tr_A0A1V4JLR1_A0A1V4JLR1_PATFA_372326 are exactly identical! WARNING: Sequences tr_H0ZNN0_H0ZNN0_TAEGU_59729 and tr_A0A218V456_A0A218V456_9PASE_299123 are exactly identical! WARNING: Sequences tr_G7NTG4_G7NTG4_MACFA_9541 and tr_A0A0D9S907_A0A0D9S907_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q866T7_CXD2_BOVIN_9913 and tr_A0A2Y9DTA5_A0A2Y9DTA5_TRIMA_127582 are exactly identical! WARNING: Sequences tr_R0LB91_R0LB91_ANAPL_8839 and tr_A0A226N3V8_A0A226N3V8_CALSU_9009 are exactly identical! WARNING: Sequences tr_R0LB91_R0LB91_ANAPL_8839 and tr_A0A226P471_A0A226P471_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A096N3G0_A0A096N3G0_PAPAN_9555 and tr_A0A2K5YEU8_A0A2K5YEU8_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A151M322_A0A151M322_ALLMI_8496 and tr_A0A1U7S1M8_A0A1U7S1M8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3M936_A0A0Q3M936_AMAAE_12930 and tr_A0A091FFB3_A0A091FFB3_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A093HVL2_A0A093HVL2_STRCA_441894 and tr_A0A099ZV98_A0A099ZV98_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1S3RB36_A0A1S3RB36_SALSA_8030 and tr_A0A060VMF1_A0A060VMF1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226NGN4_A0A226NGN4_CALSU_9009 and tr_A0A226PCQ5_A0A226PCQ5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2K5KKI7_A0A2K5KKI7_CERAT_9531 and tr_A0A2K5YMG1_A0A2K5YMG1_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U3V8T4_A0A2U3V8T4_TURTR_9739 and tr_A0A2Y9N9F1_A0A2Y9N9F1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V952_A0A2U3V952_TURTR_9739 and tr_A0A2Y9P6T6_A0A2Y9P6T6_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V952_A0A2U3V952_TURTR_9739 and tr_A0A2Y9F871_A0A2Y9F871_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3V952_A0A2U3V952_TURTR_9739 and tr_A0A383ZZM0_A0A383ZZM0_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 93 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5T442/4_raxmlng_ancestral/Q5T442.raxml.reduced.phy Alignment comprises 1 partitions and 439 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 439 Gaps: 31.24 % Invariant sites: 0.23 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5T442/4_raxmlng_ancestral/Q5T442.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5T442/3_mltree/Q5T442.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 110 / 8800 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -134003.170803 [00:00:00 -134003.170803] Initial branch length optimization [00:00:01 -121396.669039] Model parameter optimization (eps = 0.100000) [00:00:35] Tree #1, final logLikelihood: -121084.107771 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.152227,0.184771) (0.176591,0.236692) (0.266938,0.800314) (0.404243,1.772300) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5T442/4_raxmlng_ancestral/Q5T442.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5T442/4_raxmlng_ancestral/Q5T442.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5T442/4_raxmlng_ancestral/Q5T442.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q5T442/4_raxmlng_ancestral/Q5T442.raxml.log Analysis started: 02-Jun-2021 18:17:51 / finished: 02-Jun-2021 18:18:31 Elapsed time: 40.017 seconds Consumed energy: 2.575 Wh