RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 02-Jul-2021 16:04:14 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5T440/2_msa/Q5T440_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5T440/3_mltree/Q5T440 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5T440/2_msa/Q5T440_trimmed_msa.fasta
[00:00:00] Loaded alignment with 774 taxa and 328 sites

WARNING: Sequences sp_Q1DK38_CAF17_COCIM_246410 and tr_A0A0J7BFI2_A0A0J7BFI2_COCIT_404692 are exactly identical!
WARNING: Sequences tr_B6QA66_B6QA66_TALMQ_441960 and tr_A0A093V8Q4_A0A093V8Q4_TALMA_1077442 are exactly identical!
WARNING: Sequences tr_B2W6W6_B2W6W6_PYRTR_426418 and tr_A0A2W1D7W9_A0A2W1D7W9_9PLEO_45151 are exactly identical!
WARNING: Sequences tr_A0A179UYN6_A0A179UYN6_BLAGS_559298 and tr_C5GLB0_C5GLB0_AJEDR_559297 are exactly identical!
WARNING: Sequences tr_F9G3K8_F9G3K8_FUSOF_660025 and tr_N4TNQ8_N4TNQ8_FUSC1_1229664 are exactly identical!
WARNING: Sequences tr_F9G3K8_F9G3K8_FUSOF_660025 and tr_X0DBY7_X0DBY7_FUSOX_1089458 are exactly identical!
WARNING: Sequences tr_A0A0E0HKJ4_A0A0E0HKJ4_ORYNI_4536 and tr_A0A0E0PT46_A0A0E0PT46_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0E0HKJ4_A0A0E0HKJ4_ORYNI_4536 and tr_Q5VNV1_Q5VNV1_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_A0A0K0JCI2_A0A0K0JCI2_BRUMA_6279 and tr_A0A0R3QZQ2_A0A0R3QZQ2_9BILA_42155 are exactly identical!
WARNING: Sequences sp_A2R472_CAF17_ASPNC_425011 and tr_A0A319A493_A0A319A493_9EURO_1450533 are exactly identical!
WARNING: Sequences tr_G7XWT4_G7XWT4_ASPKW_1033177 and tr_A0A146EYQ8_A0A146EYQ8_9EURO_1069201 are exactly identical!
WARNING: Sequences tr_F2SSD1_F2SSD1_TRIRC_559305 and tr_A0A178EV08_A0A178EV08_TRIRU_5551 are exactly identical!
WARNING: Sequences tr_A0A0D2XDY3_A0A0D2XDY3_FUSO4_426428 and tr_A0A2H3HNQ2_A0A2H3HNQ2_FUSOX_327505 are exactly identical!
WARNING: Sequences tr_L0P9E5_L0P9E5_PNEJ8_1209962 and tr_A0A0W4ZWI6_A0A0W4ZWI6_PNEJ7_1408657 are exactly identical!
WARNING: Sequences tr_V2Z119_V2Z119_MONRO_1381753 and tr_A0A0W0FCN1_A0A0W0FCN1_9AGAR_221103 are exactly identical!
WARNING: Sequences tr_A0A078K145_A0A078K145_BRANA_3708 and tr_A0A0D3D990_A0A0D3D990_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_A0A094EP58_A0A094EP58_9PEZI_1420912 and tr_A0A1B8G892_A0A1B8G892_9PEZI_342668 are exactly identical!
WARNING: Sequences tr_A0A0W8DVY9_A0A0W8DVY9_PHYNI_4790 and tr_W2L573_W2L573_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_A0A164ZR24_A0A164ZR24_9HOMO_1314777 and tr_A0A166BWD2_A0A166BWD2_9HOMO_1314776 are exactly identical!
WARNING: Sequences tr_A0A1S3Z0F7_A0A1S3Z0F7_TOBAC_4097 and tr_A0A1U7VX53_A0A1U7VX53_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1V8U3I7_A0A1V8U3I7_9PEZI_1974281 and tr_A0A1V8TFY0_A0A1V8TFY0_9PEZI_1507870 are exactly identical!
WARNING: Duplicate sequences found: 21

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5T440/3_mltree/Q5T440.raxml.reduced.phy

Alignment comprises 1 partitions and 328 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 328 / 328
Gaps: 13.69 %
Invariant sites: 0.30 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5T440/3_mltree/Q5T440.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 774 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 328 / 26240
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -429625.847053] Initial branch length optimization
[00:00:05 -367155.429954] Model parameter optimization (eps = 10.000000)
[00:01:20 -366555.570590] AUTODETECT spr round 1 (radius: 5)
[00:03:48 -287660.288561] AUTODETECT spr round 2 (radius: 10)
[00:06:46 -216015.798187] AUTODETECT spr round 3 (radius: 15)
[00:09:53 -193491.579978] AUTODETECT spr round 4 (radius: 20)
[00:13:57 -184553.660191] AUTODETECT spr round 5 (radius: 25)
[00:18:05 -183737.399713] SPR radius for FAST iterations: 25 (autodetect)
[00:18:05 -183737.399713] Model parameter optimization (eps = 3.000000)
[00:18:25 -183677.358362] FAST spr round 1 (radius: 25)
[00:22:10 -169711.045943] FAST spr round 2 (radius: 25)
[00:25:00 -168990.719161] FAST spr round 3 (radius: 25)
[00:27:26 -168912.937711] FAST spr round 4 (radius: 25)
[00:29:21 -168905.720317] FAST spr round 5 (radius: 25)
[00:31:10 -168904.166139] FAST spr round 6 (radius: 25)
[00:32:55 -168904.166037] Model parameter optimization (eps = 1.000000)
[00:33:19 -168902.031055] SLOW spr round 1 (radius: 5)
[00:36:17 -168864.769377] SLOW spr round 2 (radius: 5)
[00:38:55 -168864.312485] SLOW spr round 3 (radius: 5)
[00:41:26 -168864.312437] SLOW spr round 4 (radius: 10)
[00:44:08 -168861.336649] SLOW spr round 5 (radius: 5)
[00:47:20 -168861.335927] SLOW spr round 6 (radius: 10)
[00:50:24 -168860.309005] SLOW spr round 7 (radius: 5)
[00:53:31 -168860.308949] SLOW spr round 8 (radius: 10)
[00:56:30 -168859.419849] SLOW spr round 9 (radius: 5)
[00:59:41 -168857.194304] SLOW spr round 10 (radius: 5)
[01:02:27 -168857.194244] SLOW spr round 11 (radius: 10)
[01:02:45] [worker #2] ML tree search #3, logLikelihood: -168895.167490
[01:05:13 -168857.194238] SLOW spr round 12 (radius: 15)
[01:09:51 -168857.194236] SLOW spr round 13 (radius: 20)
[01:13:52] [worker #4] ML tree search #5, logLikelihood: -168957.439531
[01:16:12 -168857.194236] SLOW spr round 14 (radius: 25)
[01:23:56 -168857.194236] Model parameter optimization (eps = 0.100000)

[01:24:15] [worker #0] ML tree search #1, logLikelihood: -168856.871365

[01:24:15 -428198.816433] Initial branch length optimization
[01:24:22 -365363.890794] Model parameter optimization (eps = 10.000000)
[01:25:24 -364747.721076] AUTODETECT spr round 1 (radius: 5)
[01:27:54 -285871.475879] AUTODETECT spr round 2 (radius: 10)
[01:30:50 -226986.034814] AUTODETECT spr round 3 (radius: 15)
[01:33:52 -195055.322825] AUTODETECT spr round 4 (radius: 20)
[01:34:09] [worker #3] ML tree search #4, logLikelihood: -168955.495771
[01:37:39 -184148.560892] AUTODETECT spr round 5 (radius: 25)
[01:41:53 -183721.850160] SPR radius for FAST iterations: 25 (autodetect)
[01:41:53 -183721.850160] Model parameter optimization (eps = 3.000000)
[01:42:20 -183655.237188] FAST spr round 1 (radius: 25)
[01:46:08 -169611.123014] FAST spr round 2 (radius: 25)
[01:46:33] [worker #1] ML tree search #2, logLikelihood: -168873.510847
[01:48:57 -169089.330499] FAST spr round 3 (radius: 25)
[01:51:23 -169022.550788] FAST spr round 4 (radius: 25)
[01:53:25 -169006.675726] FAST spr round 5 (radius: 25)
[01:55:15 -169005.350799] FAST spr round 6 (radius: 25)
[01:57:02 -169005.348039] Model parameter optimization (eps = 1.000000)
[01:57:20 -168995.361557] SLOW spr round 1 (radius: 5)
[02:00:18 -168953.562746] SLOW spr round 2 (radius: 5)
[02:03:09 -168929.638988] SLOW spr round 3 (radius: 5)
[02:05:57 -168910.218580] SLOW spr round 4 (radius: 5)
[02:08:34 -168906.297007] SLOW spr round 5 (radius: 5)
[02:11:05 -168906.296262] SLOW spr round 6 (radius: 10)
[02:13:46 -168900.418970] SLOW spr round 7 (radius: 5)
[02:17:05 -168892.025269] SLOW spr round 8 (radius: 5)
[02:19:21] [worker #2] ML tree search #8, logLikelihood: -168881.432291
[02:19:54 -168892.024279] SLOW spr round 9 (radius: 10)
[02:22:42 -168892.024220] SLOW spr round 10 (radius: 15)
[02:27:34 -168892.024208] SLOW spr round 11 (radius: 20)
[02:29:16] [worker #4] ML tree search #10, logLikelihood: -168884.492272
[02:34:19 -168892.024205] SLOW spr round 12 (radius: 25)
[02:42:32 -168892.024205] Model parameter optimization (eps = 0.100000)

[02:42:40] [worker #0] ML tree search #6, logLikelihood: -168891.735561

[02:42:40 -428839.076825] Initial branch length optimization
[02:42:46 -368226.769046] Model parameter optimization (eps = 10.000000)
[02:44:01 -367636.011174] AUTODETECT spr round 1 (radius: 5)
[02:46:31 -283542.268637] AUTODETECT spr round 2 (radius: 10)
[02:49:20 -219269.926850] AUTODETECT spr round 3 (radius: 15)
[02:52:32 -190741.991888] AUTODETECT spr round 4 (radius: 20)
[02:56:22 -184462.670113] AUTODETECT spr round 5 (radius: 25)
[03:00:00] [worker #3] ML tree search #9, logLikelihood: -168870.530234
[03:00:08] [worker #1] ML tree search #7, logLikelihood: -168874.251114
[03:01:04 -183555.898633] SPR radius for FAST iterations: 25 (autodetect)
[03:01:04 -183555.898633] Model parameter optimization (eps = 3.000000)
[03:01:33 -183426.354803] FAST spr round 1 (radius: 25)
[03:05:24 -169627.388911] FAST spr round 2 (radius: 25)
[03:08:16 -169031.695827] FAST spr round 3 (radius: 25)
[03:10:36 -168980.022606] FAST spr round 4 (radius: 25)
[03:12:37 -168953.306265] FAST spr round 5 (radius: 25)
[03:14:36 -168928.437947] FAST spr round 6 (radius: 25)
[03:16:23 -168927.333415] FAST spr round 7 (radius: 25)
[03:18:08 -168927.333378] Model parameter optimization (eps = 1.000000)
[03:18:48 -168921.631680] SLOW spr round 1 (radius: 5)
[03:21:42 -168882.358112] SLOW spr round 2 (radius: 5)
[03:24:25 -168873.011516] SLOW spr round 3 (radius: 5)
[03:26:59 -168872.935510] SLOW spr round 4 (radius: 10)
[03:29:37 -168872.308947] SLOW spr round 5 (radius: 5)
[03:32:54 -168864.266927] SLOW spr round 6 (radius: 5)
[03:33:55] [worker #2] ML tree search #13, logLikelihood: -168884.279381
[03:34:29] [worker #4] ML tree search #15, logLikelihood: -168892.785944
[03:35:43 -168864.266841] SLOW spr round 7 (radius: 10)
[03:38:27 -168864.266840] SLOW spr round 8 (radius: 15)
[03:43:02 -168864.266840] SLOW spr round 9 (radius: 20)
[03:49:15 -168864.266840] SLOW spr round 10 (radius: 25)
[03:56:45 -168864.266840] Model parameter optimization (eps = 0.100000)

[03:56:51] [worker #0] ML tree search #11, logLikelihood: -168864.195931

[03:56:51 -425214.744581] Initial branch length optimization
[03:56:57 -363646.727394] Model parameter optimization (eps = 10.000000)
[03:57:50 -363059.986665] AUTODETECT spr round 1 (radius: 5)
[04:00:19 -287941.406626] AUTODETECT spr round 2 (radius: 10)
[04:03:18 -230984.969402] AUTODETECT spr round 3 (radius: 15)
[04:06:27 -196984.101139] AUTODETECT spr round 4 (radius: 20)
[04:10:21 -188937.802039] AUTODETECT spr round 5 (radius: 25)
[04:15:14 -185701.952689] SPR radius for FAST iterations: 25 (autodetect)
[04:15:14 -185701.952689] Model parameter optimization (eps = 3.000000)
[04:15:16] [worker #1] ML tree search #12, logLikelihood: -168891.603935
[04:15:36 -185686.065132] FAST spr round 1 (radius: 25)
[04:19:41 -169535.672619] FAST spr round 2 (radius: 25)
[04:22:39 -169037.900275] FAST spr round 3 (radius: 25)
[04:25:06 -168990.250540] FAST spr round 4 (radius: 25)
[04:27:00 -168987.771017] FAST spr round 5 (radius: 25)
[04:28:49 -168987.770602] Model parameter optimization (eps = 1.000000)
[04:29:09 -168953.825484] SLOW spr round 1 (radius: 5)
[04:29:58] [worker #3] ML tree search #14, logLikelihood: -168865.415577
[04:32:13 -168895.529107] SLOW spr round 2 (radius: 5)
[04:35:05 -168884.747837] SLOW spr round 3 (radius: 5)
[04:37:40 -168884.483628] SLOW spr round 4 (radius: 5)
[04:40:12 -168884.483618] SLOW spr round 5 (radius: 10)
[04:42:54 -168883.793188] SLOW spr round 6 (radius: 5)
[04:43:59] [worker #2] ML tree search #18, logLikelihood: -168912.688565
[04:46:08 -168883.792945] SLOW spr round 7 (radius: 10)
[04:49:11 -168883.792940] SLOW spr round 8 (radius: 15)
[04:53:51 -168883.792939] SLOW spr round 9 (radius: 20)
[04:55:33] [worker #4] ML tree search #20, logLikelihood: -168923.074603
[05:00:47 -168883.792939] SLOW spr round 10 (radius: 25)
[05:08:49 -168883.792939] Model parameter optimization (eps = 0.100000)

[05:09:04] [worker #0] ML tree search #16, logLikelihood: -168883.643621

[05:31:03] [worker #1] ML tree search #17, logLikelihood: -168915.046136
[05:41:28] [worker #3] ML tree search #19, logLikelihood: -168886.041843

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.134169,0.334770) (0.247190,0.459850) (0.257805,0.862778) (0.360836,1.715421) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -168856.871365

AIC score: 340815.742730 / AICc score: 5155119.742730 / BIC score: 346698.706837
Free parameters (model + branch lengths): 1551

WARNING: Number of free parameters (K=1551) is larger than alignment size (n=328).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5T440/3_mltree/Q5T440.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5T440/3_mltree/Q5T440.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5T440/3_mltree/Q5T440.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q5T440/3_mltree/Q5T440.raxml.log

Analysis started: 02-Jul-2021 16:04:14 / finished: 02-Jul-2021 21:45:43

Elapsed time: 20488.228 seconds

Consumed energy: 1723.044 Wh (= 9 km in an electric car, or 43 km with an e-scooter!)