RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 05-Jul-2021 15:54:44 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q496M5/2_msa/Q496M5_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q496M5/3_mltree/Q496M5 --seed 2 --threads 1 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), NONE/sequential

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q496M5/2_msa/Q496M5_trimmed_msa.fasta
[00:00:00] Loaded alignment with 791 taxa and 63 sites

WARNING: Sequences tr_V7AN33_V7AN33_PHAVU_3885 and tr_A0A1S3TFE5_A0A1S3TFE5_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_E9GCT1_E9GCT1_DAPPU_6669 and tr_A0A164XS43_A0A164XS43_9CRUS_35525 are exactly identical!
WARNING: Sequences tr_E2AVU3_E2AVU3_CAMFO_104421 and tr_E2BKT1_E2BKT1_HARSA_610380 are exactly identical!
WARNING: Sequences sp_Q60806_PLK3_MOUSE_10090 and sp_Q9R011_PLK3_RAT_10116 are exactly identical!
WARNING: Sequences tr_M3YL84_M3YL84_MUSPF_9669 and tr_A0A2Y9LF43_A0A2Y9LF43_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_G1NVX2_G1NVX2_MYOLU_59463 and tr_F6T643_F6T643_HORSE_9796 are exactly identical!
WARNING: Sequences tr_G1NVX2_G1NVX2_MYOLU_59463 and tr_W5NSV9_W5NSV9_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_G1NVX2_G1NVX2_MYOLU_59463 and tr_Q0VCE7_Q0VCE7_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_G1NVX2_G1NVX2_MYOLU_59463 and tr_L5KPA5_L5KPA5_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_G1NVX2_G1NVX2_MYOLU_59463 and tr_M3WCG5_M3WCG5_FELCA_9685 are exactly identical!
WARNING: Sequences tr_G3RAW2_G3RAW2_GORGO_9595 and tr_H2NWU6_H2NWU6_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G3RWF2_G3RWF2_GORGO_9595 and tr_G1U4Y9_G1U4Y9_RABIT_9986 are exactly identical!
WARNING: Sequences tr_G3RWF2_G3RWF2_GORGO_9595 and tr_H2PYW5_H2PYW5_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3RWF2_G3RWF2_GORGO_9595 and tr_H0WV81_H0WV81_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_G3RWF2_G3RWF2_GORGO_9595 and tr_H0UXX0_H0UXX0_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_G3RWF2_G3RWF2_GORGO_9595 and sp_Q9H4B4_PLK3_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3RWF2_G3RWF2_GORGO_9595 and tr_F7HPN1_F7HPN1_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G3RWF2_G3RWF2_GORGO_9595 and tr_G7NUZ1_G7NUZ1_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G3RWF2_G3RWF2_GORGO_9595 and tr_A0A2I3MXI7_A0A2I3MXI7_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G3RWF2_G3RWF2_GORGO_9595 and tr_A0A0D9S7H0_A0A0D9S7H0_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G3RWF2_G3RWF2_GORGO_9595 and tr_A0A3Q0EBX5_A0A3Q0EBX5_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G3RWF2_G3RWF2_GORGO_9595 and tr_A0A2K5NJU4_A0A2K5NJU4_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G3RWF2_G3RWF2_GORGO_9595 and tr_A0A2K6D852_A0A2K6D852_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G3RWF2_G3RWF2_GORGO_9595 and tr_A0A2K6A0H5_A0A2K6A0H5_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G3RWF2_G3RWF2_GORGO_9595 and tr_A0A2R9BEM8_A0A2R9BEM8_PANPA_9597 are exactly identical!
WARNING: Sequences tr_E2RGK9_E2RGK9_CANLF_9615 and tr_D2HUP1_D2HUP1_AILME_9646 are exactly identical!
WARNING: Sequences tr_E2RGK9_E2RGK9_CANLF_9615 and tr_A0A2U3XC49_A0A2U3XC49_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_E2RGK9_E2RGK9_CANLF_9615 and tr_A0A384CT19_A0A384CT19_URSMA_29073 are exactly identical!
WARNING: Sequences tr_K4C201_K4C201_SOLLC_4081 and tr_M1CL76_M1CL76_SOLTU_4113 are exactly identical!
WARNING: Sequences tr_K4DCA0_K4DCA0_SOLLC_4081 and tr_M1ADH3_M1ADH3_SOLTU_4113 are exactly identical!
WARNING: Sequences tr_K4DHR4_K4DHR4_SOLLC_4081 and tr_M1A014_M1A014_SOLTU_4113 are exactly identical!
WARNING: Sequences tr_A0A088A214_A0A088A214_APIME_7460 and tr_A0A2A3ENH2_A0A2A3ENH2_APICC_94128 are exactly identical!
WARNING: Sequences tr_H9ISA9_H9ISA9_BOMMO_7091 and tr_A0A2A4K5G1_A0A2A4K5G1_HELVI_7102 are exactly identical!
WARNING: Sequences tr_A0A158NX55_A0A158NX55_ATTCE_12957 and tr_A0A195BKD0_A0A195BKD0_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A0E0FIB4_A0A0E0FIB4_ORYNI_4536 and tr_A0A0E0MSW4_A0A0E0MSW4_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0E0FIB4_A0A0E0FIB4_ORYNI_4536 and tr_A0A0D9Y506_A0A0D9Y506_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_A0A0E0FKE5_A0A0E0FKE5_ORYNI_4536 and tr_I1NME1_I1NME1_ORYGL_4538 are exactly identical!
WARNING: Sequences tr_A0A0E0FKE5_A0A0E0FKE5_ORYNI_4536 and tr_A0A0E0MUZ3_A0A0E0MUZ3_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0E0FKE5_A0A0E0FKE5_ORYNI_4536 and tr_A0A0D3EMR6_A0A0D3EMR6_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_A0A0E0FKE5_A0A0E0FKE5_ORYNI_4536 and tr_A0A0D9Y737_A0A0D9Y737_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_A0A0E0FKE5_A0A0E0FKE5_ORYNI_4536 and sp_Q9LGV5_CIPK1_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_A0A0E0GLN2_A0A0E0GLN2_ORYNI_4536 and tr_I1PAS3_I1PAS3_ORYGL_4538 are exactly identical!
WARNING: Sequences tr_A0A0E0GLN2_A0A0E0GLN2_ORYNI_4536 and tr_A0A0E0CZS3_A0A0E0CZS3_9ORYZ_40149 are exactly identical!
WARNING: Sequences tr_A0A0E0GLN2_A0A0E0GLN2_ORYNI_4536 and tr_A0A0E0NUA7_A0A0E0NUA7_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0E0GLN2_A0A0E0GLN2_ORYNI_4536 and tr_A0A0D3FHU1_A0A0D3FHU1_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_A0A0E0GLN2_A0A0E0GLN2_ORYNI_4536 and tr_A0A0D9Z6H7_A0A0D9Z6H7_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_A0A0E0GLN2_A0A0E0GLN2_ORYNI_4536 and sp_Q6X4A2_CIPKV_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_A0A0E0HB04_A0A0E0HB04_ORYNI_4536 and tr_A2Y1H9_A2Y1H9_ORYSI_39946 are exactly identical!
WARNING: Sequences tr_A0A0E0HB04_A0A0E0HB04_ORYNI_4536 and tr_I1PT97_I1PT97_ORYGL_4538 are exactly identical!
WARNING: Sequences tr_A0A0E0HB04_A0A0E0HB04_ORYNI_4536 and tr_A0A0E0PIV5_A0A0E0PIV5_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0E0HB04_A0A0E0HB04_ORYNI_4536 and tr_A0A0D3G4E2_A0A0D3G4E2_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_A0A0E0HB04_A0A0E0HB04_ORYNI_4536 and tr_A0A0D9ZVM3_A0A0D9ZVM3_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_A0A0E0HB04_A0A0E0HB04_ORYNI_4536 and sp_Q60EY8_CIPKK_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_A0A0E0I5W8_A0A0E0I5W8_ORYNI_4536 and tr_A2YQ36_A2YQ36_ORYSI_39946 are exactly identical!
WARNING: Sequences tr_A0A0E0I5W8_A0A0E0I5W8_ORYNI_4536 and tr_I1QDD6_I1QDD6_ORYGL_4538 are exactly identical!
WARNING: Sequences tr_A0A0E0I5W8_A0A0E0I5W8_ORYNI_4536 and tr_A0A0E0EGD3_A0A0E0EGD3_9ORYZ_40149 are exactly identical!
WARNING: Sequences tr_A0A0E0I5W8_A0A0E0I5W8_ORYNI_4536 and tr_A0A0E0QCZ0_A0A0E0QCZ0_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0E0I5W8_A0A0E0I5W8_ORYNI_4536 and tr_A0A0D3GV65_A0A0D3GV65_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_A0A0E0I5W8_A0A0E0I5W8_ORYNI_4536 and tr_A0A0E0APH3_A0A0E0APH3_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_A0A0E0I5W8_A0A0E0I5W8_ORYNI_4536 and sp_Q8LIG4_CIPK3_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_A0A0E0IJL7_A0A0E0IJL7_ORYNI_4536 and tr_A2Z1A6_A2Z1A6_ORYSI_39946 are exactly identical!
WARNING: Sequences tr_A0A0E0IJL7_A0A0E0IJL7_ORYNI_4536 and tr_A0A0E0QRG8_A0A0E0QRG8_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0E0IJL7_A0A0E0IJL7_ORYNI_4536 and sp_Q6ERS4_CIPKG_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_D0NEA4_D0NEA4_PHYIT_403677 and tr_W2QAX1_W2QAX1_PHYPN_761204 are exactly identical!
WARNING: Sequences tr_D0NEA4_D0NEA4_PHYIT_403677 and tr_A0A0W8BVV9_A0A0W8BVV9_PHYNI_4790 are exactly identical!
WARNING: Sequences tr_D0NEA4_D0NEA4_PHYIT_403677 and tr_W2L8X5_W2L8X5_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_D0NEA4_D0NEA4_PHYIT_403677 and tr_A0A329T4Z5_A0A329T4Z5_9STRA_29920 are exactly identical!
WARNING: Sequences tr_A0A1D5QW90_A0A1D5QW90_MACMU_9544 and tr_A0A2K5LQR4_A0A2K5LQR4_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2K1WZ69_A0A2K1WZ69_POPTR_3694 and tr_A0MNJ4_A0MNJ4_POPTR_3694 are exactly identical!
WARNING: Sequences tr_I1QNY7_I1QNY7_ORYGL_4538 and tr_A0A0E0ES93_A0A0E0ES93_9ORYZ_40149 are exactly identical!
WARNING: Sequences tr_I1QNY7_I1QNY7_ORYGL_4538 and tr_A0A0D3H6X1_A0A0D3H6X1_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_I1QNY7_I1QNY7_ORYGL_4538 and tr_A0A0E0B303_A0A0E0B303_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_F4X6B9_F4X6B9_ACREC_103372 and tr_A0A195FVL4_A0A195FVL4_9HYME_34720 are exactly identical!
WARNING: Sequences tr_U3D713_U3D713_CALJA_9483 and tr_A0A091CRL6_A0A091CRL6_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_A8X8A2_A8X8A2_CAEBR_6238 and tr_A0A2G5UFU3_A0A2G5UFU3_9PELO_1611254 are exactly identical!
WARNING: Sequences tr_L0P7J6_L0P7J6_PNEJ8_1209962 and tr_M7NW50_M7NW50_PNEMU_1069680 are exactly identical!
WARNING: Sequences tr_M7YG84_M7YG84_TRIUA_4572 and tr_A0A0D3R0R8_A0A0D3R0R8_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_M7YG84_M7YG84_TRIUA_4572 and tr_A0A3B6C1W3_A0A3B6C1W3_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_M7YND7_M7YND7_TRIUA_4572 and tr_A0A3B6HS18_A0A3B6HS18_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_M7ZDG1_M7ZDG1_TRIUA_4572 and tr_A0A3B6EGN7_A0A3B6EGN7_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_M7ZDG1_M7ZDG1_TRIUA_4572 and tr_A0A3B6GTD2_A0A3B6GTD2_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_M7ZFG2_M7ZFG2_TRIUA_4572 and tr_A0A0D3R0R3_A0A0D3R0R3_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_M7ZFG2_M7ZFG2_TRIUA_4572 and tr_A0A3B6HRJ8_A0A3B6HRJ8_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_M7ZFG2_M7ZFG2_TRIUA_4572 and tr_K7SGP0_K7SGP0_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_M7ZWR8_M7ZWR8_TRIUA_4572 and tr_W5ET91_W5ET91_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_U5HA27_U5HA27_USTV1_683840 and tr_A0A238F8Y6_A0A238F8Y6_9BASI_269621 are exactly identical!
WARNING: Sequences tr_U5HA27_U5HA27_USTV1_683840 and tr_A0A2X0LWP3_A0A2X0LWP3_9BASI_796604 are exactly identical!
WARNING: Sequences tr_V2WNV1_V2WNV1_MONRO_1381753 and tr_A0A0W0GC98_A0A0W0GC98_9AGAR_221103 are exactly identical!
WARNING: Sequences tr_A0A3B6BZY9_A0A3B6BZY9_WHEAT_4565 and tr_W5C7Z8_W5C7Z8_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_A0A061GJH5_A0A061GJH5_THECC_3641 and tr_A0A1R3GUI2_A0A1R3GUI2_COCAP_210143 are exactly identical!
WARNING: Sequences tr_A0A067DRW6_A0A067DRW6_CITSI_2711 and tr_V4TC11_V4TC11_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A067DRW6_A0A067DRW6_CITSI_2711 and tr_A0A2H5NK66_A0A2H5NK66_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A067F884_A0A067F884_CITSI_2711 and tr_V4WJF1_V4WJF1_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A067F884_A0A067F884_CITSI_2711 and tr_A0A2H5PWI0_A0A2H5PWI0_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A067FT18_A0A067FT18_CITSI_2711 and tr_V4W1D3_V4W1D3_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A067FT18_A0A067FT18_CITSI_2711 and tr_A0A2H5PER3_A0A2H5PER3_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A067R110_A0A067R110_ZOONE_136037 and tr_A0A2P8Y7M8_A0A2P8Y7M8_BLAGE_6973 are exactly identical!
WARNING: Sequences tr_A0A078FBE0_A0A078FBE0_BRANA_3708 and tr_A0A0D3CH06_A0A0D3CH06_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_A0A0D9R331_A0A0D9R331_CHLSB_60711 and tr_A0A2K5Z4L7_A0A2K5Z4L7_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A0A0D2R728_A0A0D2R728_GOSRA_29730 and tr_A0A1U8J4A7_A0A1U8J4A7_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2R728_A0A0D2R728_GOSRA_29730 and tr_A0A1U8MET8_A0A1U8MET8_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2R732_A0A0D2R732_GOSRA_29730 and tr_A0A1U8JAA7_A0A1U8JAA7_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2STT8_A0A0D2STT8_GOSRA_29730 and tr_A0A1U8IUQ0_A0A1U8IUQ0_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2TE66_A0A0D2TE66_GOSRA_29730 and tr_A0A1U8JMK7_A0A1U8JMK7_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2TE66_A0A0D2TE66_GOSRA_29730 and tr_A0A1U8PGI2_A0A1U8PGI2_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2TE66_A0A0D2TE66_GOSRA_29730 and tr_A0A1U8PN46_A0A1U8PN46_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2UGU4_A0A0D2UGU4_GOSRA_29730 and tr_A0A1U8PV51_A0A1U8PV51_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2UTE8_A0A0D2UTE8_GOSRA_29730 and tr_A0A1U8INW9_A0A1U8INW9_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0L9T602_A0A0L9T602_PHAAN_3914 and tr_A0A1S3VUQ0_A0A1S3VUQ0_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_A0A0N0PDM7_A0A0N0PDM7_PAPMA_76193 and tr_A0A0N0PA08_A0A0N0PA08_PAPXU_66420 are exactly identical!
WARNING: Sequences tr_A0A0C9WQZ8_A0A0C9WQZ8_9AGAR_1095629 and tr_A0A0C9X0W7_A0A0C9X0W7_9AGAR_1095629 are exactly identical!
WARNING: Sequences tr_A0A0P1BQN8_A0A0P1BQN8_9BASI_401625 and tr_A0A316VWD0_A0A316VWD0_9BASI_1522189 are exactly identical!
WARNING: Sequences tr_A0A137Q767_A0A137Q767_9AGAR_1714833 and tr_A0A137R080_A0A137R080_9AGAR_1714833 are exactly identical!
WARNING: Sequences tr_A0A164XT77_A0A164XT77_9HOMO_1314777 and tr_A0A165XQ67_A0A165XQ67_9HOMO_1314776 are exactly identical!
WARNING: Sequences tr_A0A3Q0J7T7_A0A3Q0J7T7_DIACI_121845 and tr_A0A3Q0JM80_A0A3Q0JM80_DIACI_121845 are exactly identical!
WARNING: Sequences tr_A0A1S3XW98_A0A1S3XW98_TOBAC_4097 and tr_A0A1S4BDW4_A0A1S4BDW4_TOBAC_4097 are exactly identical!
WARNING: Sequences tr_A0A1S3XW98_A0A1S3XW98_TOBAC_4097 and tr_A0A1J6HWI6_A0A1J6HWI6_NICAT_49451 are exactly identical!
WARNING: Sequences tr_A0A1S3XW98_A0A1S3XW98_TOBAC_4097 and tr_A0A1U7XE03_A0A1U7XE03_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S3YJE7_A0A1S3YJE7_TOBAC_4097 and tr_A0A1U7VZ00_A0A1U7VZ00_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S3YSI0_A0A1S3YSI0_TOBAC_4097 and tr_A0A1U7WTI2_A0A1U7WTI2_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S3Z0Y9_A0A1S3Z0Y9_TOBAC_4097 and tr_A0A314L6H2_A0A314L6H2_NICAT_49451 are exactly identical!
WARNING: Sequences tr_A0A1S3Z9L4_A0A1S3Z9L4_TOBAC_4097 and tr_A0A1J6I657_A0A1J6I657_NICAT_49451 are exactly identical!
WARNING: Sequences tr_A0A1S3Z9L4_A0A1S3Z9L4_TOBAC_4097 and tr_A0A1U7X3D4_A0A1U7X3D4_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S4AXQ0_A0A1S4AXQ0_TOBAC_4097 and tr_A0A1U7Y9W5_A0A1U7Y9W5_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S4AXR2_A0A1S4AXR2_TOBAC_4097 and tr_A0A1S4CPW5_A0A1S4CPW5_TOBAC_4097 are exactly identical!
WARNING: Sequences tr_A0A1S4AXR2_A0A1S4AXR2_TOBAC_4097 and tr_A0A314KJQ2_A0A314KJQ2_NICAT_49451 are exactly identical!
WARNING: Sequences tr_A0A1S4AXR2_A0A1S4AXR2_TOBAC_4097 and tr_A0A1U7Y7A4_A0A1U7Y7A4_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S4B5T3_A0A1S4B5T3_TOBAC_4097 and tr_A0A1J6HUS9_A0A1J6HUS9_NICAT_49451 are exactly identical!
WARNING: Sequences tr_A0A1S4B5T3_A0A1S4B5T3_TOBAC_4097 and tr_A0A1U7VU62_A0A1U7VU62_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S4CAL1_A0A1S4CAL1_TOBAC_4097 and tr_A0A314KQ80_A0A314KQ80_NICAT_49451 are exactly identical!
WARNING: Sequences tr_A0A1S4CAL1_A0A1S4CAL1_TOBAC_4097 and tr_A0A1U7W360_A0A1U7W360_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S3TA53_A0A1S3TA53_VIGRR_3916 and tr_A0A3Q0EQA1_A0A3Q0EQA1_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_A0A1S3TA53_A0A1S3TA53_VIGRR_3916 and tr_A0A3Q0ERZ7_A0A3Q0ERZ7_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_A0A1S3TA53_A0A1S3TA53_VIGRR_3916 and tr_A0A3Q0ESL8_A0A3Q0ESL8_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_A0A1S3ULL0_A0A1S3ULL0_VIGRR_3916 and tr_A0A3Q0FBJ8_A0A3Q0FBJ8_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_A0A1B9IWU8_A0A1B9IWU8_9TREE_1331196 and tr_A0A1B9G8K5_A0A1B9G8K5_9TREE_1296100 are exactly identical!
WARNING: Sequences tr_A0A1U8JLY9_A0A1U8JLY9_GOSHI_3635 and tr_A0A1U8PKP0_A0A1U8PKP0_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A1U8KN35_A0A1U8KN35_GOSHI_3635 and tr_A0A1U8P0Q3_A0A1U8P0Q3_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A1U8FKW3_A0A1U8FKW3_CAPAN_4072 and tr_A0A2G3DF55_A0A2G3DF55_CAPCH_80379 are exactly identical!
WARNING: Sequences tr_A0A2G2ZJR3_A0A2G2ZJR3_CAPAN_4072 and tr_A0A2G3CHV0_A0A2G3CHV0_CAPCH_80379 are exactly identical!
WARNING: Sequences tr_A0A2G8S8H0_A0A2G8S8H0_9APHY_1077348 and tr_A0A2G8S8X9_A0A2G8S8X9_9APHY_1077348 are exactly identical!
WARNING: Sequences tr_A0A2G8JF31_A0A2G8JF31_STIJA_307972 and tr_A0A2G8L5Z2_A0A2G8L5Z2_STIJA_307972 are exactly identical!
WARNING: Sequences tr_A0A2I1G798_A0A2I1G798_9GLOM_588596 and tr_A0A2H5QZC6_A0A2H5QZC6_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A2I4GQZ1_A0A2I4GQZ1_JUGRE_51240 and tr_A0A2I4HBX0_A0A2I4HBX0_JUGRE_51240 are exactly identical!
WARNING: Sequences tr_A0A2P5F3B3_A0A2P5F3B3_TREOI_63057 and tr_A0A2P5C0H2_A0A2P5C0H2_PARAD_3476 are exactly identical!
WARNING: Sequences tr_A0A2P5A783_A0A2P5A783_PARAD_3476 and tr_A0A2P5B796_A0A2P5B796_PARAD_3476 are exactly identical!
WARNING: Sequences tr_A0A2Y9NE73_A0A2Y9NE73_DELLE_9749 and tr_A0A2Y9EX55_A0A2Y9EX55_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2Y9NE73_A0A2Y9NE73_DELLE_9749 and tr_A0A383YP33_A0A383YP33_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 148

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q496M5/3_mltree/Q496M5.raxml.reduced.phy

Alignment comprises 1 partitions and 63 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 63 / 63
Gaps: 0.07 %
Invariant sites: 3.17 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q496M5/3_mltree/Q496M5.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 791 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 63 / 5040
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -92482.404516] Initial branch length optimization
[00:00:01 -76074.521935] Model parameter optimization (eps = 10.000000)
[00:00:13 -75773.335424] AUTODETECT spr round 1 (radius: 5)
[00:00:54 -54263.628675] AUTODETECT spr round 2 (radius: 10)
[00:01:44 -40046.958250] AUTODETECT spr round 3 (radius: 15)
[00:02:43 -33864.305861] AUTODETECT spr round 4 (radius: 20)
[00:03:48 -32406.329750] AUTODETECT spr round 5 (radius: 25)
[00:04:54 -32155.817603] SPR radius for FAST iterations: 25 (autodetect)
[00:04:54 -32155.817603] Model parameter optimization (eps = 3.000000)
[00:05:04 -32138.028981] FAST spr round 1 (radius: 25)
[00:06:02 -28230.256397] FAST spr round 2 (radius: 25)
[00:06:53 -27318.159743] FAST spr round 3 (radius: 25)
[00:07:40 -27156.558112] FAST spr round 4 (radius: 25)
[00:08:26 -27124.137065] FAST spr round 5 (radius: 25)
[00:09:08 -27112.528666] FAST spr round 6 (radius: 25)
[00:09:49 -27112.527965] Model parameter optimization (eps = 1.000000)
[00:09:55 -27111.637457] SLOW spr round 1 (radius: 5)
[00:10:49 -27108.198179] SLOW spr round 2 (radius: 5)
[00:11:42 -27106.866082] SLOW spr round 3 (radius: 5)
[00:12:34 -27106.605835] SLOW spr round 4 (radius: 5)
[00:13:24 -27106.603747] SLOW spr round 5 (radius: 10)
[00:14:14 -27105.303759] SLOW spr round 6 (radius: 5)
[00:15:16 -27105.302510] SLOW spr round 7 (radius: 10)
[00:16:09 -27105.301863] SLOW spr round 8 (radius: 15)
[00:17:13 -27103.268585] SLOW spr round 9 (radius: 5)
[00:18:18 -27099.433437] SLOW spr round 10 (radius: 5)
[00:19:15 -27099.257222] SLOW spr round 11 (radius: 5)
[00:20:08 -27099.257222] SLOW spr round 12 (radius: 10)
[00:20:57 -27097.935536] SLOW spr round 13 (radius: 5)
[00:21:59 -27097.935192] SLOW spr round 14 (radius: 10)
[00:22:52 -27097.935177] SLOW spr round 15 (radius: 15)
[00:23:56 -27097.689242] SLOW spr round 16 (radius: 5)
[00:25:00 -27097.689210] SLOW spr round 17 (radius: 10)
[00:25:54 -27097.689209] SLOW spr round 18 (radius: 15)
[00:26:56 -27097.689208] SLOW spr round 19 (radius: 20)
[00:28:10 -27097.689208] SLOW spr round 20 (radius: 25)
[00:29:31 -27097.689208] Model parameter optimization (eps = 0.100000)

[00:29:34] ML tree search #1, logLikelihood: -27097.604109

[00:29:34 -92413.975625] Initial branch length optimization
[00:29:36 -76016.084634] Model parameter optimization (eps = 10.000000)
[00:29:48 -75722.294032] AUTODETECT spr round 1 (radius: 5)
[00:30:39 -53842.660235] AUTODETECT spr round 2 (radius: 10)
[00:31:35 -40180.181162] AUTODETECT spr round 3 (radius: 15)
[00:32:32 -35230.868464] AUTODETECT spr round 4 (radius: 20)
[00:33:36 -31985.009600] AUTODETECT spr round 5 (radius: 25)
[00:34:40 -31109.467169] SPR radius for FAST iterations: 25 (autodetect)
[00:34:40 -31109.467169] Model parameter optimization (eps = 3.000000)
[00:34:51 -31099.454647] FAST spr round 1 (radius: 25)
[00:35:45 -26299.802423] FAST spr round 2 (radius: 25)
[00:36:32 -25404.405237] FAST spr round 3 (radius: 25)
[00:37:18 -24660.636722] FAST spr round 4 (radius: 25)
[00:38:03 -24227.313214] FAST spr round 5 (radius: 25)
[00:38:48 -24173.748002] FAST spr round 6 (radius: 25)
[00:39:29 -24172.249831] FAST spr round 7 (radius: 25)
[00:40:10 -24172.249110] Model parameter optimization (eps = 1.000000)
[00:40:14 -24171.626162] SLOW spr round 1 (radius: 5)
[00:41:07 -24162.793221] SLOW spr round 2 (radius: 5)
[00:41:57 -24162.778636] SLOW spr round 3 (radius: 10)
[00:42:45 -24161.754738] SLOW spr round 4 (radius: 5)
[00:43:46 -24161.753626] SLOW spr round 5 (radius: 10)
[00:44:38 -24161.753185] SLOW spr round 6 (radius: 15)
[00:45:43 -24161.434873] SLOW spr round 7 (radius: 5)
[00:46:46 -24159.494265] SLOW spr round 8 (radius: 5)
[00:47:41 -24158.782253] SLOW spr round 9 (radius: 5)
[00:48:33 -24158.293410] SLOW spr round 10 (radius: 5)
[00:49:23 -24158.293226] SLOW spr round 11 (radius: 10)
[00:50:11 -24158.293226] SLOW spr round 12 (radius: 15)
[00:51:20 -24157.955679] SLOW spr round 13 (radius: 5)
[00:52:23 -24157.628536] SLOW spr round 14 (radius: 5)
[00:53:19 -24157.627325] SLOW spr round 15 (radius: 10)
[00:54:10 -24157.627290] SLOW spr round 16 (radius: 15)
[00:55:16 -24157.627286] SLOW spr round 17 (radius: 20)
[00:56:29 -24157.627286] SLOW spr round 18 (radius: 25)
[00:57:55 -24157.627286] Model parameter optimization (eps = 0.100000)

[00:57:58] ML tree search #2, logLikelihood: -24157.596337

[00:57:58 -92590.518934] Initial branch length optimization
[00:58:00 -75752.160304] Model parameter optimization (eps = 10.000000)
[00:58:15 -75456.888656] AUTODETECT spr round 1 (radius: 5)
[00:59:05 -55004.781487] AUTODETECT spr round 2 (radius: 10)
[01:00:00 -43198.842807] AUTODETECT spr round 3 (radius: 15)
[01:01:03 -35973.842074] AUTODETECT spr round 4 (radius: 20)
[01:02:07 -32058.545624] AUTODETECT spr round 5 (radius: 25)
[01:03:18 -31583.721962] SPR radius for FAST iterations: 25 (autodetect)
[01:03:18 -31583.721962] Model parameter optimization (eps = 3.000000)
[01:03:29 -31570.264606] FAST spr round 1 (radius: 25)
[01:04:28 -27503.593580] FAST spr round 2 (radius: 25)
[01:05:19 -27106.122960] FAST spr round 3 (radius: 25)
[01:06:07 -26771.506845] FAST spr round 4 (radius: 25)
[01:06:57 -25645.537074] FAST spr round 5 (radius: 25)
[01:07:45 -24952.984161] FAST spr round 6 (radius: 25)
[01:08:32 -24499.013264] FAST spr round 7 (radius: 25)
[01:09:17 -24172.222661] FAST spr round 8 (radius: 25)
[01:10:01 -24159.789142] FAST spr round 9 (radius: 25)
[01:10:44 -24155.637355] FAST spr round 10 (radius: 25)
[01:11:25 -24154.510555] FAST spr round 11 (radius: 25)
[01:12:05 -24154.510331] Model parameter optimization (eps = 1.000000)
[01:12:13 -24151.831164] SLOW spr round 1 (radius: 5)
[01:13:08 -24142.154141] SLOW spr round 2 (radius: 5)
[01:13:59 -24141.997089] SLOW spr round 3 (radius: 5)
[01:14:50 -24141.996992] SLOW spr round 4 (radius: 10)
[01:15:39 -24141.389356] SLOW spr round 5 (radius: 5)
[01:16:44 -24141.389355] SLOW spr round 6 (radius: 10)
[01:17:42 -24141.113691] SLOW spr round 7 (radius: 5)
[01:18:47 -24141.113688] SLOW spr round 8 (radius: 10)
[01:19:45 -24141.113688] SLOW spr round 9 (radius: 15)
[01:20:54 -24138.122439] SLOW spr round 10 (radius: 5)
[01:22:03 -24132.462335] SLOW spr round 11 (radius: 5)
[01:23:05 -24131.328339] SLOW spr round 12 (radius: 5)
[01:24:02 -24131.328337] SLOW spr round 13 (radius: 10)
[01:24:56 -24131.328337] SLOW spr round 14 (radius: 15)
[01:26:06 -24131.328337] SLOW spr round 15 (radius: 20)
[01:27:26 -24130.690404] SLOW spr round 16 (radius: 5)
[01:28:35 -24130.689856] SLOW spr round 17 (radius: 10)
[01:29:37 -24130.689785] SLOW spr round 18 (radius: 15)
[01:30:42 -24130.689774] SLOW spr round 19 (radius: 20)
[01:32:04 -24130.689772] SLOW spr round 20 (radius: 25)
[01:33:30 -24130.581876] SLOW spr round 21 (radius: 5)
[01:34:42 -24129.394657] SLOW spr round 22 (radius: 5)
[01:35:44 -24129.392054] SLOW spr round 23 (radius: 10)
[01:36:41 -24129.391142] SLOW spr round 24 (radius: 15)
[01:37:50 -24128.700334] SLOW spr round 25 (radius: 5)
[01:38:59 -24127.713694] SLOW spr round 26 (radius: 5)
[01:40:00 -24127.713512] SLOW spr round 27 (radius: 10)
[01:40:56 -24127.713512] SLOW spr round 28 (radius: 15)
[01:42:05 -24127.291065] SLOW spr round 29 (radius: 5)
[01:43:13 -24127.289326] SLOW spr round 30 (radius: 10)
[01:44:13 -24127.288880] SLOW spr round 31 (radius: 15)
[01:45:20 -24127.288867] SLOW spr round 32 (radius: 20)
[01:46:40 -24127.288867] SLOW spr round 33 (radius: 25)
[01:48:09 -24127.288867] Model parameter optimization (eps = 0.100000)

[01:48:16] ML tree search #3, logLikelihood: -24127.177388

[01:48:16 -93471.467725] Initial branch length optimization
[01:48:17 -76477.411894] Model parameter optimization (eps = 10.000000)
[01:48:32 -76190.818497] AUTODETECT spr round 1 (radius: 5)
[01:49:28 -54545.619873] AUTODETECT spr round 2 (radius: 10)
[01:50:33 -40827.504871] AUTODETECT spr round 3 (radius: 15)
[01:51:40 -36023.553402] AUTODETECT spr round 4 (radius: 20)
[01:52:53 -33213.999672] AUTODETECT spr round 5 (radius: 25)
[01:54:11 -31252.044855] SPR radius for FAST iterations: 25 (autodetect)
[01:54:11 -31252.044855] Model parameter optimization (eps = 3.000000)
[01:54:22 -31244.213470] FAST spr round 1 (radius: 25)
[01:55:26 -25101.118579] FAST spr round 2 (radius: 25)
[01:56:18 -24189.765259] FAST spr round 3 (radius: 25)
[01:57:07 -24146.406604] FAST spr round 4 (radius: 25)
[01:57:53 -24138.439681] FAST spr round 5 (radius: 25)
[01:58:39 -24136.385824] FAST spr round 6 (radius: 25)
[01:59:24 -24135.324913] FAST spr round 7 (radius: 25)
[02:00:09 -24135.324869] Model parameter optimization (eps = 1.000000)
[02:00:20 -24128.247398] SLOW spr round 1 (radius: 5)
[02:01:19 -24123.548062] SLOW spr round 2 (radius: 5)
[02:02:15 -24123.475952] SLOW spr round 3 (radius: 10)
[02:03:10 -24121.089978] SLOW spr round 4 (radius: 5)
[02:04:18 -24119.684620] SLOW spr round 5 (radius: 5)
[02:05:19 -24119.683558] SLOW spr round 6 (radius: 10)
[02:06:14 -24119.682945] SLOW spr round 7 (radius: 15)
[02:07:25 -24117.401145] SLOW spr round 8 (radius: 5)
[02:08:27 -24117.400145] SLOW spr round 9 (radius: 10)
[02:09:20 -24116.191466] SLOW spr round 10 (radius: 5)
[02:10:19 -24116.191029] SLOW spr round 11 (radius: 10)
[02:11:11 -24116.190883] SLOW spr round 12 (radius: 15)
[02:12:15 -24115.662542] SLOW spr round 13 (radius: 5)
[02:13:17 -24115.263415] SLOW spr round 14 (radius: 5)
[02:14:12 -24115.263151] SLOW spr round 15 (radius: 10)
[02:15:03 -24115.263113] SLOW spr round 16 (radius: 15)
[02:16:10 -24115.263086] SLOW spr round 17 (radius: 20)
[02:17:28 -24112.533900] SLOW spr round 18 (radius: 5)
[02:18:32 -24106.731500] SLOW spr round 19 (radius: 5)
[02:19:30 -24106.467353] SLOW spr round 20 (radius: 5)
[02:20:22 -24106.466933] SLOW spr round 21 (radius: 10)
[02:21:08 -24106.466840] SLOW spr round 22 (radius: 15)
[02:22:18 -24106.466817] SLOW spr round 23 (radius: 20)
[02:23:36 -24106.466809] SLOW spr round 24 (radius: 25)
[02:25:09 -24106.466806] Model parameter optimization (eps = 0.100000)

[02:25:12] ML tree search #4, logLikelihood: -24106.418535

[02:25:12 -91787.363496] Initial branch length optimization
[02:25:13 -75757.587366] Model parameter optimization (eps = 10.000000)
[02:25:28 -75521.827541] AUTODETECT spr round 1 (radius: 5)
[02:26:18 -53900.016312] AUTODETECT spr round 2 (radius: 10)
[02:27:13 -41458.946633] AUTODETECT spr round 3 (radius: 15)
[02:28:13 -34293.053497] AUTODETECT spr round 4 (radius: 20)
[02:29:18 -31525.866875] AUTODETECT spr round 5 (radius: 25)
[02:30:27 -30438.089097] SPR radius for FAST iterations: 25 (autodetect)
[02:30:27 -30438.089097] Model parameter optimization (eps = 3.000000)
[02:30:44 -30417.115951] FAST spr round 1 (radius: 25)
[02:31:42 -26727.420445] FAST spr round 2 (radius: 25)
[02:32:31 -26354.199050] FAST spr round 3 (radius: 25)
[02:33:17 -26171.303278] FAST spr round 4 (radius: 25)
[02:34:05 -25831.404680] FAST spr round 5 (radius: 25)
[02:34:52 -24549.609248] FAST spr round 6 (radius: 25)
[02:35:37 -24189.512243] FAST spr round 7 (radius: 25)
[02:36:21 -24169.028482] FAST spr round 8 (radius: 25)
[02:37:02 -24167.717513] FAST spr round 9 (radius: 25)
[02:37:44 -24167.715031] Model parameter optimization (eps = 1.000000)
[02:37:51 -24166.439271] SLOW spr round 1 (radius: 5)
[02:38:43 -24161.872053] SLOW spr round 2 (radius: 5)
[02:39:36 -24160.333321] SLOW spr round 3 (radius: 5)
[02:40:27 -24159.186671] SLOW spr round 4 (radius: 5)
[02:41:17 -24159.186296] SLOW spr round 5 (radius: 10)
[02:42:10 -24130.093709] SLOW spr round 6 (radius: 5)
[02:43:12 -24128.242069] SLOW spr round 7 (radius: 5)
[02:44:06 -24128.242040] SLOW spr round 8 (radius: 10)
[02:44:56 -24128.242033] SLOW spr round 9 (radius: 15)
[02:46:03 -24128.071993] SLOW spr round 10 (radius: 5)
[02:47:05 -24128.071991] SLOW spr round 11 (radius: 10)
[02:48:00 -24128.071991] SLOW spr round 12 (radius: 15)
[02:49:05 -24128.071990] SLOW spr round 13 (radius: 20)
[02:50:26 -24125.243317] SLOW spr round 14 (radius: 5)
[02:51:30 -24124.422829] SLOW spr round 15 (radius: 5)
[02:52:28 -24123.335210] SLOW spr round 16 (radius: 5)
[02:53:20 -24123.335003] SLOW spr round 17 (radius: 10)
[02:54:10 -24123.334949] SLOW spr round 18 (radius: 15)
[02:55:19 -24123.334930] SLOW spr round 19 (radius: 20)
[02:56:42 -24123.334925] SLOW spr round 20 (radius: 25)
[02:58:25 -24123.334923] Model parameter optimization (eps = 0.100000)

[02:58:28] ML tree search #5, logLikelihood: -24123.301876

[02:58:28 -92781.904513] Initial branch length optimization
[02:58:29 -76470.222290] Model parameter optimization (eps = 10.000000)
[02:58:42 -76196.762096] AUTODETECT spr round 1 (radius: 5)
[02:59:32 -54233.215902] AUTODETECT spr round 2 (radius: 10)
[03:00:27 -43071.774837] AUTODETECT spr round 3 (radius: 15)
[03:01:28 -36674.769484] AUTODETECT spr round 4 (radius: 20)
[03:02:35 -31558.529485] AUTODETECT spr round 5 (radius: 25)
[03:03:45 -30244.415052] SPR radius for FAST iterations: 25 (autodetect)
[03:03:45 -30244.415052] Model parameter optimization (eps = 3.000000)
[03:03:48 -30243.303544] FAST spr round 1 (radius: 25)
[03:04:45 -24739.189210] FAST spr round 2 (radius: 25)
[03:05:35 -24199.590081] FAST spr round 3 (radius: 25)
[03:06:21 -24156.004076] FAST spr round 4 (radius: 25)
[03:07:04 -24151.821830] FAST spr round 5 (radius: 25)
[03:07:44 -24151.821088] Model parameter optimization (eps = 1.000000)
[03:07:52 -24139.427171] SLOW spr round 1 (radius: 5)
[03:08:46 -24128.240900] SLOW spr round 2 (radius: 5)
[03:09:38 -24125.918949] SLOW spr round 3 (radius: 5)
[03:10:30 -24125.290092] SLOW spr round 4 (radius: 5)
[03:11:20 -24125.288352] SLOW spr round 5 (radius: 10)
[03:12:09 -24125.288175] SLOW spr round 6 (radius: 15)
[03:13:20 -24125.034512] SLOW spr round 7 (radius: 5)
[03:14:22 -24125.034497] SLOW spr round 8 (radius: 10)
[03:15:17 -24119.498596] SLOW spr round 9 (radius: 5)
[03:16:17 -24119.497214] SLOW spr round 10 (radius: 10)
[03:17:10 -24119.497134] SLOW spr round 11 (radius: 15)
[03:18:18 -24119.497128] SLOW spr round 12 (radius: 20)
[03:19:40 -24118.762181] SLOW spr round 13 (radius: 5)
[03:20:46 -24114.830655] SLOW spr round 14 (radius: 5)
[03:21:43 -24114.599799] SLOW spr round 15 (radius: 5)
[03:22:37 -24110.190558] SLOW spr round 16 (radius: 5)
[03:23:29 -24110.186912] SLOW spr round 17 (radius: 10)
[03:24:19 -24110.185837] SLOW spr round 18 (radius: 15)
[03:25:28 -24110.185479] SLOW spr round 19 (radius: 20)
[03:26:47 -24110.185354] SLOW spr round 20 (radius: 25)
[03:28:19 -24109.591185] SLOW spr round 21 (radius: 5)
[03:29:24 -24109.410589] SLOW spr round 22 (radius: 5)
[03:30:21 -24109.410196] SLOW spr round 23 (radius: 10)
[03:31:13 -24109.410178] SLOW spr round 24 (radius: 15)
[03:32:21 -24109.410176] SLOW spr round 25 (radius: 20)
[03:33:41 -24109.410176] SLOW spr round 26 (radius: 25)
[03:35:14 -24109.410176] Model parameter optimization (eps = 0.100000)

[03:35:17] ML tree search #6, logLikelihood: -24109.325852

[03:35:17 -92289.655043] Initial branch length optimization
[03:35:18 -75787.843789] Model parameter optimization (eps = 10.000000)
[03:35:30 -75528.623026] AUTODETECT spr round 1 (radius: 5)
[03:36:20 -55362.298222] AUTODETECT spr round 2 (radius: 10)
[03:37:18 -43508.912252] AUTODETECT spr round 3 (radius: 15)
[03:38:20 -35844.459156] AUTODETECT spr round 4 (radius: 20)
[03:39:29 -32881.585261] AUTODETECT spr round 5 (radius: 25)
[03:40:43 -30474.095664] SPR radius for FAST iterations: 25 (autodetect)
[03:40:43 -30474.095664] Model parameter optimization (eps = 3.000000)
[03:40:51 -30456.963208] FAST spr round 1 (radius: 25)
[03:41:49 -25559.431976] FAST spr round 2 (radius: 25)
[03:42:40 -24475.917738] FAST spr round 3 (radius: 25)
[03:43:28 -24330.767744] FAST spr round 4 (radius: 25)
[03:44:14 -24320.746255] FAST spr round 5 (radius: 25)
[03:44:55 -24320.327793] FAST spr round 6 (radius: 25)
[03:45:36 -24296.779722] FAST spr round 7 (radius: 25)
[03:46:17 -24296.779583] Model parameter optimization (eps = 1.000000)
[03:46:25 -24294.676645] SLOW spr round 1 (radius: 5)
[03:47:18 -24290.771382] SLOW spr round 2 (radius: 5)
[03:48:09 -24290.155495] SLOW spr round 3 (radius: 5)
[03:48:59 -24290.155480] SLOW spr round 4 (radius: 10)
[03:49:49 -24289.362537] SLOW spr round 5 (radius: 5)
[03:50:50 -24289.361654] SLOW spr round 6 (radius: 10)
[03:51:43 -24289.277854] SLOW spr round 7 (radius: 15)
[03:52:48 -24289.277853] SLOW spr round 8 (radius: 20)
[03:54:04 -24289.277853] SLOW spr round 9 (radius: 25)
[03:55:29 -24288.658861] SLOW spr round 10 (radius: 5)
[03:56:33 -24288.650217] SLOW spr round 11 (radius: 10)
[03:57:30 -24288.649448] SLOW spr round 12 (radius: 15)
[03:58:33 -24288.649375] SLOW spr round 13 (radius: 20)
[03:59:48 -24288.649368] SLOW spr round 14 (radius: 25)
[04:01:13 -24288.649367] Model parameter optimization (eps = 0.100000)

[04:01:16] ML tree search #7, logLikelihood: -24288.644608

[04:01:16 -92126.548104] Initial branch length optimization
[04:01:17 -75352.133656] Model parameter optimization (eps = 10.000000)
[04:01:33 -75079.235920] AUTODETECT spr round 1 (radius: 5)
[04:02:23 -55253.728928] AUTODETECT spr round 2 (radius: 10)
[04:03:21 -42181.272023] AUTODETECT spr round 3 (radius: 15)
[04:04:23 -34717.009653] AUTODETECT spr round 4 (radius: 20)
[04:05:31 -31969.815059] AUTODETECT spr round 5 (radius: 25)
[04:06:39 -31836.112047] SPR radius for FAST iterations: 25 (autodetect)
[04:06:39 -31836.112047] Model parameter optimization (eps = 3.000000)
[04:06:46 -31813.707227] FAST spr round 1 (radius: 25)
[04:07:44 -27217.622597] FAST spr round 2 (radius: 25)
[04:08:34 -27028.689918] FAST spr round 3 (radius: 25)
[04:09:19 -26858.256343] FAST spr round 4 (radius: 25)
[04:10:04 -26722.589588] FAST spr round 5 (radius: 25)
[04:10:47 -25485.622424] FAST spr round 6 (radius: 25)
[04:11:31 -24553.323914] FAST spr round 7 (radius: 25)
[04:12:16 -24211.046347] FAST spr round 8 (radius: 25)
[04:13:00 -24153.262528] FAST spr round 9 (radius: 25)
[04:13:42 -24150.171211] FAST spr round 10 (radius: 25)
[04:14:22 -24145.878188] FAST spr round 11 (radius: 25)
[04:15:03 -24145.877548] Model parameter optimization (eps = 1.000000)
[04:15:07 -24145.481768] SLOW spr round 1 (radius: 5)
[04:16:00 -24139.126319] SLOW spr round 2 (radius: 5)
[04:16:52 -24138.141562] SLOW spr round 3 (radius: 5)
[04:17:42 -24138.135393] SLOW spr round 4 (radius: 10)
[04:18:31 -24138.135348] SLOW spr round 5 (radius: 15)
[04:19:40 -24134.270945] SLOW spr round 6 (radius: 5)
[04:20:42 -24133.345508] SLOW spr round 7 (radius: 5)
[04:21:37 -24133.344222] SLOW spr round 8 (radius: 10)
[04:22:28 -24133.094764] SLOW spr round 9 (radius: 5)
[04:23:28 -24133.094355] SLOW spr round 10 (radius: 10)
[04:24:21 -24133.094344] SLOW spr round 11 (radius: 15)
[04:25:24 -24133.094343] SLOW spr round 12 (radius: 20)
[04:26:43 -24132.287502] SLOW spr round 13 (radius: 5)
[04:27:46 -24132.136726] SLOW spr round 14 (radius: 5)
[04:28:43 -24132.135863] SLOW spr round 15 (radius: 10)
[04:29:34 -24132.135812] SLOW spr round 16 (radius: 15)
[04:30:39 -24132.135807] SLOW spr round 17 (radius: 20)
[04:31:58 -24131.866089] SLOW spr round 18 (radius: 5)
[04:33:00 -24131.864806] SLOW spr round 19 (radius: 10)
[04:33:57 -24131.864702] SLOW spr round 20 (radius: 15)
[04:35:00 -24131.864690] SLOW spr round 21 (radius: 20)
[04:36:20 -24131.864687] SLOW spr round 22 (radius: 25)
[04:37:46 -24131.864686] Model parameter optimization (eps = 0.100000)

[04:37:51] ML tree search #8, logLikelihood: -24131.752981

[04:37:51 -91927.166130] Initial branch length optimization
[04:37:52 -75809.356659] Model parameter optimization (eps = 10.000000)
[04:38:05 -75571.336312] AUTODETECT spr round 1 (radius: 5)
[04:38:56 -53950.412506] AUTODETECT spr round 2 (radius: 10)
[04:39:52 -42357.680377] AUTODETECT spr round 3 (radius: 15)
[04:40:54 -35616.325488] AUTODETECT spr round 4 (radius: 20)
[04:42:01 -32479.948730] AUTODETECT spr round 5 (radius: 25)
[04:43:12 -31569.632392] SPR radius for FAST iterations: 25 (autodetect)
[04:43:12 -31569.632392] Model parameter optimization (eps = 3.000000)
[04:43:20 -31551.899389] FAST spr round 1 (radius: 25)
[04:44:16 -26854.801225] FAST spr round 2 (radius: 25)
[04:45:05 -26543.319350] FAST spr round 3 (radius: 25)
[04:45:51 -25921.240950] FAST spr round 4 (radius: 25)
[04:46:39 -24418.546056] FAST spr round 5 (radius: 25)
[04:47:25 -24119.136134] FAST spr round 6 (radius: 25)
[04:48:07 -24116.230425] FAST spr round 7 (radius: 25)
[04:48:48 -24115.845712] FAST spr round 8 (radius: 25)
[04:49:28 -24115.845480] Model parameter optimization (eps = 1.000000)
[04:49:32 -24115.660706] SLOW spr round 1 (radius: 5)
[04:50:27 -24104.450127] SLOW spr round 2 (radius: 5)
[04:51:19 -24102.574084] SLOW spr round 3 (radius: 5)
[04:52:11 -24100.982463] SLOW spr round 4 (radius: 5)
[04:53:02 -24100.003753] SLOW spr round 5 (radius: 5)
[04:53:52 -24100.003357] SLOW spr round 6 (radius: 10)
[04:54:41 -24097.820034] SLOW spr round 7 (radius: 5)
[04:55:41 -24097.587764] SLOW spr round 8 (radius: 5)
[04:56:35 -24097.587694] SLOW spr round 9 (radius: 10)
[04:57:24 -24097.587688] SLOW spr round 10 (radius: 15)
[04:58:31 -24096.639738] SLOW spr round 11 (radius: 5)
[04:59:33 -24096.639565] SLOW spr round 12 (radius: 10)
[05:00:26 -24096.600710] SLOW spr round 13 (radius: 15)
[05:01:30 -24096.600709] SLOW spr round 14 (radius: 20)
[05:02:49 -24096.600709] SLOW spr round 15 (radius: 25)
[05:04:21 -24096.600709] Model parameter optimization (eps = 0.100000)

[05:04:24] ML tree search #9, logLikelihood: -24096.580865

[05:04:24 -92410.666303] Initial branch length optimization
[05:04:25 -76159.871769] Model parameter optimization (eps = 10.000000)
[05:04:40 -75866.626383] AUTODETECT spr round 1 (radius: 5)
[05:05:29 -54723.289542] AUTODETECT spr round 2 (radius: 10)
[05:06:24 -42228.531559] AUTODETECT spr round 3 (radius: 15)
[05:07:24 -35635.284072] AUTODETECT spr round 4 (radius: 20)
[05:08:27 -33264.424046] AUTODETECT spr round 5 (radius: 25)
[05:09:38 -32435.456973] SPR radius for FAST iterations: 25 (autodetect)
[05:09:38 -32435.456973] Model parameter optimization (eps = 3.000000)
[05:09:49 -32419.749478] FAST spr round 1 (radius: 25)
[05:10:51 -28410.168126] FAST spr round 2 (radius: 25)
[05:11:42 -28156.606361] FAST spr round 3 (radius: 25)
[05:12:31 -28018.364409] FAST spr round 4 (radius: 25)
[05:13:21 -27693.171334] FAST spr round 5 (radius: 25)
[05:14:13 -27305.081717] FAST spr round 6 (radius: 25)
[05:15:03 -27233.400686] FAST spr round 7 (radius: 25)
[05:15:50 -27220.938858] FAST spr round 8 (radius: 25)
[05:16:34 -27220.938417] Model parameter optimization (eps = 1.000000)
[05:16:44 -27203.513543] SLOW spr round 1 (radius: 5)
[05:17:43 -27190.610816] SLOW spr round 2 (radius: 5)
[05:18:41 -27188.016656] SLOW spr round 3 (radius: 5)
[05:19:37 -27185.571473] SLOW spr round 4 (radius: 5)
[05:20:31 -27183.447105] SLOW spr round 5 (radius: 5)
[05:21:25 -27183.446998] SLOW spr round 6 (radius: 10)
[05:22:20 -27183.446942] SLOW spr round 7 (radius: 15)
[05:23:35 -27183.126708] SLOW spr round 8 (radius: 5)
[05:24:44 -27181.783793] SLOW spr round 9 (radius: 5)
[05:25:45 -27181.783764] SLOW spr round 10 (radius: 10)
[05:26:41 -27181.783763] SLOW spr round 11 (radius: 15)
[05:27:52 -27181.783762] SLOW spr round 12 (radius: 20)
[05:29:13 -27180.683354] SLOW spr round 13 (radius: 5)
[05:30:24 -27180.683318] SLOW spr round 14 (radius: 10)
[05:31:25 -27180.683317] SLOW spr round 15 (radius: 15)
[05:32:35 -27180.683317] SLOW spr round 16 (radius: 20)
[05:33:56 -27180.683317] SLOW spr round 17 (radius: 25)
[05:35:25 -27179.039012] SLOW spr round 18 (radius: 5)
[05:36:37 -27174.894584] SLOW spr round 19 (radius: 5)
[05:37:42 -27174.894502] SLOW spr round 20 (radius: 10)
[05:38:38 -27174.894499] SLOW spr round 21 (radius: 15)
[05:39:49 -27174.894499] SLOW spr round 22 (radius: 20)
[05:41:08 -27174.894499] SLOW spr round 23 (radius: 25)
[05:42:38 -27174.667704] SLOW spr round 24 (radius: 5)
[05:43:48 -27174.667662] SLOW spr round 25 (radius: 10)
[05:44:51 -27174.667661] SLOW spr round 26 (radius: 15)
[05:46:00 -27174.667661] SLOW spr round 27 (radius: 20)
[05:47:21 -27174.667661] SLOW spr round 28 (radius: 25)
[05:48:50 -27174.667661] Model parameter optimization (eps = 0.100000)

[05:48:53] ML tree search #10, logLikelihood: -27174.569032

[05:48:53 -93199.802872] Initial branch length optimization
[05:48:54 -76471.599173] Model parameter optimization (eps = 10.000000)
[05:49:08 -76166.982089] AUTODETECT spr round 1 (radius: 5)
[05:50:04 -55248.889645] AUTODETECT spr round 2 (radius: 10)
[05:51:05 -43509.413134] AUTODETECT spr round 3 (radius: 15)
[05:52:10 -38274.051361] AUTODETECT spr round 4 (radius: 20)
[05:53:25 -35463.226515] AUTODETECT spr round 5 (radius: 25)
[05:54:43 -33023.335165] SPR radius for FAST iterations: 25 (autodetect)
[05:54:43 -33023.335165] Model parameter optimization (eps = 3.000000)
[05:54:46 -33022.523836] FAST spr round 1 (radius: 25)
[05:55:51 -24950.857824] FAST spr round 2 (radius: 25)
[05:56:45 -24216.017484] FAST spr round 3 (radius: 25)
[05:57:33 -24160.289572] FAST spr round 4 (radius: 25)
[05:58:18 -24158.681657] FAST spr round 5 (radius: 25)
[05:59:04 -24158.680103] Model parameter optimization (eps = 1.000000)
[05:59:10 -24152.882070] SLOW spr round 1 (radius: 5)
[06:00:11 -24143.637314] SLOW spr round 2 (radius: 5)
[06:01:08 -24140.295749] SLOW spr round 3 (radius: 5)
[06:02:02 -24140.294187] SLOW spr round 4 (radius: 10)
[06:02:57 -24134.912432] SLOW spr round 5 (radius: 5)
[06:04:06 -24128.254714] SLOW spr round 6 (radius: 5)
[06:05:08 -24126.793525] SLOW spr round 7 (radius: 5)
[06:06:05 -24126.791398] SLOW spr round 8 (radius: 10)
[06:07:00 -24126.414030] SLOW spr round 9 (radius: 5)
[06:08:07 -24126.413288] SLOW spr round 10 (radius: 10)
[06:09:06 -24126.089408] SLOW spr round 11 (radius: 5)
[06:10:12 -24125.309667] SLOW spr round 12 (radius: 5)
[06:11:11 -24125.309500] SLOW spr round 13 (radius: 10)
[06:12:05 -24125.309498] SLOW spr round 14 (radius: 15)
[06:13:18 -24125.309496] SLOW spr round 15 (radius: 20)
[06:14:42 -24123.318436] SLOW spr round 16 (radius: 5)
[06:15:52 -24123.312868] SLOW spr round 17 (radius: 10)
[06:16:53 -24123.312307] SLOW spr round 18 (radius: 15)
[06:18:02 -24123.312239] SLOW spr round 19 (radius: 20)
[06:19:27 -24123.312226] SLOW spr round 20 (radius: 25)
[06:21:02 -24123.312222] Model parameter optimization (eps = 0.100000)

[06:21:07] ML tree search #11, logLikelihood: -24123.080840

[06:21:07 -93064.905048] Initial branch length optimization
[06:21:08 -75845.526607] Model parameter optimization (eps = 10.000000)
[06:21:24 -75569.180990] AUTODETECT spr round 1 (radius: 5)
[06:22:19 -55764.575361] AUTODETECT spr round 2 (radius: 10)
[06:23:23 -42959.802126] AUTODETECT spr round 3 (radius: 15)
[06:24:29 -35944.129811] AUTODETECT spr round 4 (radius: 20)
[06:25:40 -32188.185893] AUTODETECT spr round 5 (radius: 25)
[06:26:56 -31600.636321] SPR radius for FAST iterations: 25 (autodetect)
[06:26:56 -31600.636321] Model parameter optimization (eps = 3.000000)
[06:27:07 -31557.836121] FAST spr round 1 (radius: 25)
[06:28:08 -25878.296056] FAST spr round 2 (radius: 25)
[06:29:01 -24686.687422] FAST spr round 3 (radius: 25)
[06:29:50 -24548.235108] FAST spr round 4 (radius: 25)
[06:30:38 -24399.578188] FAST spr round 5 (radius: 25)
[06:31:27 -24310.738317] FAST spr round 6 (radius: 25)
[06:32:13 -24301.933161] FAST spr round 7 (radius: 25)
[06:32:58 -24301.237203] FAST spr round 8 (radius: 25)
[06:33:42 -24301.237046] Model parameter optimization (eps = 1.000000)
[06:33:50 -24298.916992] SLOW spr round 1 (radius: 5)
[06:34:47 -24292.108116] SLOW spr round 2 (radius: 5)
[06:35:42 -24291.824465] SLOW spr round 3 (radius: 5)
[06:36:37 -24289.371258] SLOW spr round 4 (radius: 5)
[06:37:33 -24286.914360] SLOW spr round 5 (radius: 5)
[06:38:27 -24286.913563] SLOW spr round 6 (radius: 10)
[06:39:22 -24286.417782] SLOW spr round 7 (radius: 5)
[06:40:28 -24286.417718] SLOW spr round 8 (radius: 10)
[06:41:27 -24286.417711] SLOW spr round 9 (radius: 15)
[06:42:42 -24275.523972] SLOW spr round 10 (radius: 5)
[06:43:54 -24271.412968] SLOW spr round 11 (radius: 5)
[06:44:55 -24271.376135] SLOW spr round 12 (radius: 10)
[06:45:51 -24268.245956] SLOW spr round 13 (radius: 5)
[06:46:59 -24265.515318] SLOW spr round 14 (radius: 5)
[06:47:58 -24265.500505] SLOW spr round 15 (radius: 10)
[06:48:54 -24263.812607] SLOW spr round 16 (radius: 5)
[06:50:01 -24263.812580] SLOW spr round 17 (radius: 10)
[06:50:59 -24263.800858] SLOW spr round 18 (radius: 15)
[06:52:11 -24263.800857] SLOW spr round 19 (radius: 20)
[06:53:40 -24261.863903] SLOW spr round 20 (radius: 5)
[06:54:49 -24261.863807] SLOW spr round 21 (radius: 10)
[06:55:52 -24261.393648] SLOW spr round 22 (radius: 5)
[06:56:56 -24261.393313] SLOW spr round 23 (radius: 10)
[06:57:53 -24261.393312] SLOW spr round 24 (radius: 15)
[06:59:05 -24261.393312] SLOW spr round 25 (radius: 20)
[07:00:33 -24261.393312] SLOW spr round 26 (radius: 25)
[07:02:08 -24261.393311] Model parameter optimization (eps = 0.100000)

[07:02:13] ML tree search #12, logLikelihood: -24261.186365

[07:02:13 -91803.991616] Initial branch length optimization
[07:02:14 -75769.635055] Model parameter optimization (eps = 10.000000)
[07:02:31 -75520.847625] AUTODETECT spr round 1 (radius: 5)
[07:03:27 -55852.095416] AUTODETECT spr round 2 (radius: 10)
[07:04:30 -43704.311641] AUTODETECT spr round 3 (radius: 15)
[07:05:36 -37347.041687] AUTODETECT spr round 4 (radius: 20)
[07:06:49 -33502.127267] AUTODETECT spr round 5 (radius: 25)
[07:08:03 -32237.276523] SPR radius for FAST iterations: 25 (autodetect)
[07:08:03 -32237.276523] Model parameter optimization (eps = 3.000000)
[07:08:17 -32217.251834] FAST spr round 1 (radius: 25)
[07:09:21 -27842.911687] FAST spr round 2 (radius: 25)
[07:10:17 -27048.152292] FAST spr round 3 (radius: 25)
[07:11:07 -25284.797507] FAST spr round 4 (radius: 25)
[07:11:57 -24391.372273] FAST spr round 5 (radius: 25)
[07:12:47 -24208.081631] FAST spr round 6 (radius: 25)
[07:13:32 -24194.960057] FAST spr round 7 (radius: 25)
[07:14:12 -24192.413413] FAST spr round 8 (radius: 25)
[07:14:52 -24192.413086] Model parameter optimization (eps = 1.000000)
[07:14:59 -24190.508659] SLOW spr round 1 (radius: 5)
[07:15:51 -24185.969023] SLOW spr round 2 (radius: 5)
[07:16:42 -24185.808846] SLOW spr round 3 (radius: 5)
[07:17:32 -24185.808504] SLOW spr round 4 (radius: 10)
[07:18:20 -24185.808409] SLOW spr round 5 (radius: 15)
[07:19:30 -24118.589720] SLOW spr round 6 (radius: 5)
[07:20:33 -24118.084407] SLOW spr round 7 (radius: 5)
[07:21:29 -24118.083760] SLOW spr round 8 (radius: 10)
[07:22:20 -24117.615924] SLOW spr round 9 (radius: 5)
[07:23:19 -24117.615823] SLOW spr round 10 (radius: 10)
[07:24:12 -24117.615821] SLOW spr round 11 (radius: 15)
[07:25:18 -24116.589187] SLOW spr round 12 (radius: 5)
[07:26:21 -24114.418167] SLOW spr round 13 (radius: 5)
[07:27:16 -24113.507083] SLOW spr round 14 (radius: 5)
[07:28:09 -24112.777082] SLOW spr round 15 (radius: 5)
[07:28:55 -24112.766267] SLOW spr round 16 (radius: 10)
[07:29:50 -24112.765698] SLOW spr round 17 (radius: 15)
[07:31:08 -24112.765674] SLOW spr round 18 (radius: 20)
[07:32:36 -24112.765673] SLOW spr round 19 (radius: 25)
[07:34:26 -24104.336766] SLOW spr round 20 (radius: 5)
[07:35:41 -24104.034075] SLOW spr round 21 (radius: 5)
[07:36:45 -24104.033411] SLOW spr round 22 (radius: 10)
[07:37:43 -24104.033388] SLOW spr round 23 (radius: 15)
[07:38:55 -24104.033387] SLOW spr round 24 (radius: 20)
[07:40:23 -24104.033387] SLOW spr round 25 (radius: 25)
[07:42:04 -24103.750150] SLOW spr round 26 (radius: 5)
[07:43:15 -24103.747787] SLOW spr round 27 (radius: 10)
[07:44:19 -24103.747697] SLOW spr round 28 (radius: 15)
[07:45:30 -24103.747694] SLOW spr round 29 (radius: 20)
[07:46:59 -24103.747693] SLOW spr round 30 (radius: 25)
[07:48:40 -24103.747693] Model parameter optimization (eps = 0.100000)

[07:48:44] ML tree search #13, logLikelihood: -24103.714585

[07:48:44 -92692.215304] Initial branch length optimization
[07:48:45 -75943.361626] Model parameter optimization (eps = 10.000000)
[07:49:01 -75611.135534] AUTODETECT spr round 1 (radius: 5)
[07:49:57 -53410.129257] AUTODETECT spr round 2 (radius: 10)
[07:51:01 -42078.757971] AUTODETECT spr round 3 (radius: 15)
[07:52:06 -36474.403218] AUTODETECT spr round 4 (radius: 20)
[07:53:27 -32484.315339] AUTODETECT spr round 5 (radius: 25)
[07:54:45 -30112.564039] SPR radius for FAST iterations: 25 (autodetect)
[07:54:45 -30112.564039] Model parameter optimization (eps = 3.000000)
[07:55:00 -30086.944350] FAST spr round 1 (radius: 25)
[07:56:07 -24689.582070] FAST spr round 2 (radius: 25)
[07:57:04 -24353.764352] FAST spr round 3 (radius: 25)
[07:57:55 -24315.117134] FAST spr round 4 (radius: 25)
[07:58:45 -24296.878473] FAST spr round 5 (radius: 25)
[07:59:32 -24296.220986] FAST spr round 6 (radius: 25)
[08:00:17 -24296.220931] Model parameter optimization (eps = 1.000000)
[08:00:21 -24295.943860] SLOW spr round 1 (radius: 5)
[08:01:20 -24284.805818] SLOW spr round 2 (radius: 5)
[08:02:18 -24278.641881] SLOW spr round 3 (radius: 5)
[08:03:14 -24278.479509] SLOW spr round 4 (radius: 5)
[08:04:09 -24278.479507] SLOW spr round 5 (radius: 10)
[08:05:05 -24278.479507] SLOW spr round 6 (radius: 15)
[08:06:20 -24278.479507] SLOW spr round 7 (radius: 20)
[08:07:47 -24277.088810] SLOW spr round 8 (radius: 5)
[08:08:57 -24277.088380] SLOW spr round 9 (radius: 10)
[08:10:00 -24277.088372] SLOW spr round 10 (radius: 15)
[08:11:10 -24277.088371] SLOW spr round 11 (radius: 20)
[08:12:40 -24277.088371] SLOW spr round 12 (radius: 25)
[08:14:28 -24272.881608] SLOW spr round 13 (radius: 5)
[08:15:40 -24271.906934] SLOW spr round 14 (radius: 5)
[08:16:45 -24271.905889] SLOW spr round 15 (radius: 10)
[08:17:42 -24271.905546] SLOW spr round 16 (radius: 15)
[08:18:56 -24271.905336] SLOW spr round 17 (radius: 20)
[08:20:23 -24271.905205] SLOW spr round 18 (radius: 25)
[08:22:10 -24271.905123] Model parameter optimization (eps = 0.100000)

[08:22:16] ML tree search #14, logLikelihood: -24271.827266

[08:22:16 -91777.538349] Initial branch length optimization
[08:22:18 -75413.426886] Model parameter optimization (eps = 10.000000)
[08:22:31 -75141.783865] AUTODETECT spr round 1 (radius: 5)
[08:23:27 -53300.057091] AUTODETECT spr round 2 (radius: 10)
[08:24:33 -40621.565309] AUTODETECT spr round 3 (radius: 15)
[08:25:41 -36363.504607] AUTODETECT spr round 4 (radius: 20)
[08:26:54 -34736.538678] AUTODETECT spr round 5 (radius: 25)
[08:28:11 -33438.109335] SPR radius for FAST iterations: 25 (autodetect)
[08:28:11 -33438.109335] Model parameter optimization (eps = 3.000000)
[08:28:21 -33404.006818] FAST spr round 1 (radius: 25)
[08:29:24 -27050.479929] FAST spr round 2 (radius: 25)
[08:30:18 -24652.429340] FAST spr round 3 (radius: 25)
[08:31:08 -24337.261596] FAST spr round 4 (radius: 25)
[08:31:57 -24295.356869] FAST spr round 5 (radius: 25)
[08:32:43 -24294.229727] FAST spr round 6 (radius: 25)
[08:33:28 -24293.335723] FAST spr round 7 (radius: 25)
[08:34:13 -24293.335556] Model parameter optimization (eps = 1.000000)
[08:34:19 -24290.885807] SLOW spr round 1 (radius: 5)
[08:35:16 -24285.622653] SLOW spr round 2 (radius: 5)
[08:36:13 -24284.751688] SLOW spr round 3 (radius: 5)
[08:37:09 -24284.738237] SLOW spr round 4 (radius: 10)
[08:38:04 -24284.157906] SLOW spr round 5 (radius: 5)
[08:39:13 -24283.300897] SLOW spr round 6 (radius: 5)
[08:40:15 -24283.298375] SLOW spr round 7 (radius: 10)
[08:41:12 -24283.297040] SLOW spr round 8 (radius: 15)
[08:42:29 -24282.503025] SLOW spr round 9 (radius: 5)
[08:43:40 -24279.786914] SLOW spr round 10 (radius: 5)
[08:44:44 -24279.117897] SLOW spr round 11 (radius: 5)
[08:45:42 -24279.117496] SLOW spr round 12 (radius: 10)
[08:46:36 -24279.117289] SLOW spr round 13 (radius: 15)
[08:47:55 -24279.117169] SLOW spr round 14 (radius: 20)
[08:49:28 -24275.185597] SLOW spr round 15 (radius: 5)
[08:50:39 -24275.172274] SLOW spr round 16 (radius: 10)
[08:51:43 -24275.170161] SLOW spr round 17 (radius: 15)
[08:52:58 -24275.169830] SLOW spr round 18 (radius: 20)
[08:54:34 -24275.169767] SLOW spr round 19 (radius: 25)
[08:56:23 -24274.955060] SLOW spr round 20 (radius: 5)
[08:57:34 -24274.952662] SLOW spr round 21 (radius: 10)
[08:58:40 -24274.952578] SLOW spr round 22 (radius: 15)
[08:59:54 -24274.952574] SLOW spr round 23 (radius: 20)
[09:01:30 -24274.952573] SLOW spr round 24 (radius: 25)
[09:03:18 -24274.952573] Model parameter optimization (eps = 0.100000)

[09:03:25] ML tree search #15, logLikelihood: -24274.645646

[09:03:25 -92527.040413] Initial branch length optimization
[09:03:26 -75878.486164] Model parameter optimization (eps = 10.000000)
[09:03:42 -75653.136411] AUTODETECT spr round 1 (radius: 5)
[09:04:39 -54791.709058] AUTODETECT spr round 2 (radius: 10)
[09:05:40 -40467.171400] AUTODETECT spr round 3 (radius: 15)
[09:06:49 -34176.921150] AUTODETECT spr round 4 (radius: 20)
[09:07:58 -31245.623834] AUTODETECT spr round 5 (radius: 25)
[09:09:21 -29634.578668] SPR radius for FAST iterations: 25 (autodetect)
[09:09:21 -29634.578668] Model parameter optimization (eps = 3.000000)
[09:09:36 -29598.970422] FAST spr round 1 (radius: 25)
[09:10:40 -24485.505378] FAST spr round 2 (radius: 25)
[09:11:32 -24226.753390] FAST spr round 3 (radius: 25)
[09:12:23 -24202.296578] FAST spr round 4 (radius: 25)
[09:13:10 -24199.763757] FAST spr round 5 (radius: 25)
[09:13:56 -24199.248651] FAST spr round 6 (radius: 25)
[09:14:41 -24199.247307] Model parameter optimization (eps = 1.000000)
[09:14:52 -24195.179767] SLOW spr round 1 (radius: 5)
[09:15:51 -24186.264689] SLOW spr round 2 (radius: 5)
[09:16:47 -24182.434755] SLOW spr round 3 (radius: 5)
[09:17:42 -24182.434593] SLOW spr round 4 (radius: 10)
[09:18:38 -24174.904200] SLOW spr round 5 (radius: 5)
[09:19:46 -24174.252526] SLOW spr round 6 (radius: 5)
[09:20:47 -24174.250608] SLOW spr round 7 (radius: 10)
[09:21:44 -24173.222659] SLOW spr round 8 (radius: 5)
[09:22:53 -24171.969339] SLOW spr round 9 (radius: 5)
[09:23:54 -24171.144107] SLOW spr round 10 (radius: 5)
[09:24:50 -24171.142878] SLOW spr round 11 (radius: 10)
[09:25:45 -24170.750611] SLOW spr round 12 (radius: 5)
[09:26:50 -24170.750608] SLOW spr round 13 (radius: 10)
[09:27:49 -24170.750608] SLOW spr round 14 (radius: 15)
[09:29:02 -24155.151189] SLOW spr round 15 (radius: 5)
[09:30:12 -24149.302660] SLOW spr round 16 (radius: 5)
[09:31:14 -24149.302319] SLOW spr round 17 (radius: 10)
[09:32:09 -24149.302301] SLOW spr round 18 (radius: 15)
[09:33:22 -24149.302299] SLOW spr round 19 (radius: 20)
[09:34:42 -24146.828513] SLOW spr round 20 (radius: 5)
[09:35:56 -24142.067910] SLOW spr round 21 (radius: 5)
[09:37:00 -24138.077530] SLOW spr round 22 (radius: 5)
[09:38:00 -24138.076428] SLOW spr round 23 (radius: 10)
[09:38:57 -24133.324147] SLOW spr round 24 (radius: 5)
[09:40:05 -24127.605660] SLOW spr round 25 (radius: 5)
[09:41:05 -24127.535329] SLOW spr round 26 (radius: 10)
[09:41:59 -24127.534715] SLOW spr round 27 (radius: 15)
[09:43:12 -24126.645166] SLOW spr round 28 (radius: 5)
[09:44:22 -24126.645159] SLOW spr round 29 (radius: 10)
[09:45:22 -24126.645159] SLOW spr round 30 (radius: 15)
[09:46:31 -24124.399131] SLOW spr round 31 (radius: 5)
[09:47:40 -24124.397868] SLOW spr round 32 (radius: 10)
[09:48:41 -24123.663464] SLOW spr round 33 (radius: 5)
[09:49:47 -24121.979494] SLOW spr round 34 (radius: 5)
[09:50:47 -24121.761320] SLOW spr round 35 (radius: 5)
[09:51:44 -24121.760539] SLOW spr round 36 (radius: 10)
[09:52:39 -24121.760526] SLOW spr round 37 (radius: 15)
[09:53:51 -24121.760526] SLOW spr round 38 (radius: 20)
[09:55:13 -24121.702504] SLOW spr round 39 (radius: 25)
[09:56:45 -24121.702479] Model parameter optimization (eps = 0.100000)

[09:56:54] ML tree search #16, logLikelihood: -24121.128477

[09:56:54 -91554.925982] Initial branch length optimization
[09:56:55 -75372.540758] Model parameter optimization (eps = 10.000000)
[09:57:10 -75094.689860] AUTODETECT spr round 1 (radius: 5)
[09:58:06 -53632.145230] AUTODETECT spr round 2 (radius: 10)
[09:59:07 -42259.181150] AUTODETECT spr round 3 (radius: 15)
[10:00:15 -36715.869286] AUTODETECT spr round 4 (radius: 20)
[10:01:34 -32784.679908] AUTODETECT spr round 5 (radius: 25)
[10:02:48 -31458.220558] SPR radius for FAST iterations: 25 (autodetect)
[10:02:49 -31458.220558] Model parameter optimization (eps = 3.000000)
[10:02:56 -31442.948524] FAST spr round 1 (radius: 25)
[10:03:58 -25195.097142] FAST spr round 2 (radius: 25)
[10:04:52 -24277.516124] FAST spr round 3 (radius: 25)
[10:05:46 -24175.526104] FAST spr round 4 (radius: 25)
[10:06:35 -24166.240398] FAST spr round 5 (radius: 25)
[10:07:21 -24164.154519] FAST spr round 6 (radius: 25)
[10:08:05 -24161.935893] FAST spr round 7 (radius: 25)
[10:08:49 -24161.934817] Model parameter optimization (eps = 1.000000)
[10:08:57 -24160.811582] SLOW spr round 1 (radius: 5)
[10:09:55 -24152.617739] SLOW spr round 2 (radius: 5)
[10:10:50 -24152.377165] SLOW spr round 3 (radius: 5)
[10:11:44 -24152.369327] SLOW spr round 4 (radius: 10)
[10:12:38 -24151.900571] SLOW spr round 5 (radius: 5)
[10:13:46 -24151.468636] SLOW spr round 6 (radius: 5)
[10:14:46 -24151.467659] SLOW spr round 7 (radius: 10)
[10:15:40 -24151.467342] SLOW spr round 8 (radius: 15)
[10:16:54 -24151.014122] SLOW spr round 9 (radius: 5)
[10:18:03 -24151.012522] SLOW spr round 10 (radius: 10)
[10:19:03 -24151.012521] SLOW spr round 11 (radius: 15)
[10:20:16 -24151.012521] SLOW spr round 12 (radius: 20)
[10:21:39 -24151.012521] SLOW spr round 13 (radius: 25)
[10:23:17 -24150.243269] SLOW spr round 14 (radius: 5)
[10:24:26 -24150.243263] SLOW spr round 15 (radius: 10)
[10:25:28 -24150.243262] SLOW spr round 16 (radius: 15)
[10:26:37 -24150.243262] SLOW spr round 17 (radius: 20)
[10:28:01 -24150.243262] SLOW spr round 18 (radius: 25)
[10:29:37 -24150.243262] Model parameter optimization (eps = 0.100000)

[10:29:45] ML tree search #17, logLikelihood: -24149.973035

[10:29:45 -92987.375471] Initial branch length optimization
[10:29:46 -75969.775505] Model parameter optimization (eps = 10.000000)
[10:30:00 -75660.360198] AUTODETECT spr round 1 (radius: 5)
[10:30:57 -55758.890386] AUTODETECT spr round 2 (radius: 10)
[10:32:03 -40023.412905] AUTODETECT spr round 3 (radius: 15)
[10:33:13 -33551.760125] AUTODETECT spr round 4 (radius: 20)
[10:34:26 -32122.977828] AUTODETECT spr round 5 (radius: 25)
[10:35:47 -30997.496454] SPR radius for FAST iterations: 25 (autodetect)
[10:35:47 -30997.496454] Model parameter optimization (eps = 3.000000)
[10:35:57 -30974.786089] FAST spr round 1 (radius: 25)
[10:37:01 -27334.134964] FAST spr round 2 (radius: 25)
[10:37:55 -26905.730317] FAST spr round 3 (radius: 25)
[10:38:45 -26027.879741] FAST spr round 4 (radius: 25)
[10:39:35 -25251.578940] FAST spr round 5 (radius: 25)
[10:40:25 -24726.102630] FAST spr round 6 (radius: 25)
[10:41:15 -24705.062633] FAST spr round 7 (radius: 25)
[10:42:04 -24512.157822] FAST spr round 8 (radius: 25)
[10:42:54 -24231.745033] FAST spr round 9 (radius: 25)
[10:43:42 -24219.334396] FAST spr round 10 (radius: 25)
[10:44:26 -24212.340836] FAST spr round 11 (radius: 25)
[10:45:11 -24212.285652] Model parameter optimization (eps = 1.000000)
[10:45:20 -24211.025587] SLOW spr round 1 (radius: 5)
[10:46:20 -24202.352428] SLOW spr round 2 (radius: 5)
[10:47:19 -24201.300527] SLOW spr round 3 (radius: 5)
[10:48:15 -24201.132155] SLOW spr round 4 (radius: 5)
[10:49:10 -24201.129643] SLOW spr round 5 (radius: 10)
[10:50:07 -24183.560869] SLOW spr round 6 (radius: 5)
[10:51:16 -24178.419908] SLOW spr round 7 (radius: 5)
[10:52:19 -24178.419901] SLOW spr round 8 (radius: 10)
[10:53:16 -24161.344441] SLOW spr round 9 (radius: 5)
[10:54:25 -24125.866773] SLOW spr round 10 (radius: 5)
[10:55:27 -24125.196945] SLOW spr round 11 (radius: 5)
[10:56:24 -24124.797938] SLOW spr round 12 (radius: 5)
[10:57:20 -24124.797938] SLOW spr round 13 (radius: 10)
[10:58:14 -24124.797938] SLOW spr round 14 (radius: 15)
[10:59:32 -24123.293882] SLOW spr round 15 (radius: 5)
[11:00:43 -24121.222059] SLOW spr round 16 (radius: 5)
[11:01:46 -24121.222053] SLOW spr round 17 (radius: 10)
[11:02:44 -24121.222053] SLOW spr round 18 (radius: 15)
[11:04:00 -24121.222053] SLOW spr round 19 (radius: 20)
[11:05:29 -24120.633371] SLOW spr round 20 (radius: 5)
[11:06:42 -24115.564343] SLOW spr round 21 (radius: 5)
[11:07:45 -24115.286141] SLOW spr round 22 (radius: 5)
[11:08:44 -24114.814432] SLOW spr round 23 (radius: 5)
[11:09:42 -24114.814432] SLOW spr round 24 (radius: 10)
[11:10:38 -24114.814432] SLOW spr round 25 (radius: 15)
[11:11:58 -24114.814432] SLOW spr round 26 (radius: 20)
[11:13:28 -24114.707664] SLOW spr round 27 (radius: 5)
[11:14:41 -24112.208130] SLOW spr round 28 (radius: 5)
[11:15:45 -24112.207930] SLOW spr round 29 (radius: 10)
[11:16:42 -24112.207923] SLOW spr round 30 (radius: 15)
[11:17:57 -24112.207923] SLOW spr round 31 (radius: 20)
[11:19:26 -24112.207923] SLOW spr round 32 (radius: 25)
[11:21:06 -24112.207923] Model parameter optimization (eps = 0.100000)

[11:21:10] ML tree search #18, logLikelihood: -24112.199978

[11:21:10 -92773.355608] Initial branch length optimization
[11:21:11 -75663.513323] Model parameter optimization (eps = 10.000000)
[11:21:28 -75336.086120] AUTODETECT spr round 1 (radius: 5)
[11:22:24 -54070.814237] AUTODETECT spr round 2 (radius: 10)
[11:23:27 -42305.394507] AUTODETECT spr round 3 (radius: 15)
[11:24:34 -37978.074086] AUTODETECT spr round 4 (radius: 20)
[11:25:50 -34270.294325] AUTODETECT spr round 5 (radius: 25)
[11:27:06 -31253.361454] SPR radius for FAST iterations: 25 (autodetect)
[11:27:06 -31253.361454] Model parameter optimization (eps = 3.000000)
[11:27:19 -31232.808089] FAST spr round 1 (radius: 25)
[11:28:26 -24645.463060] FAST spr round 2 (radius: 25)
[11:29:21 -24301.259821] FAST spr round 3 (radius: 25)
[11:30:12 -24270.431443] FAST spr round 4 (radius: 25)
[11:30:59 -24257.092303] FAST spr round 5 (radius: 25)
[11:31:45 -24257.088924] Model parameter optimization (eps = 1.000000)
[11:31:53 -24253.710240] SLOW spr round 1 (radius: 5)
[11:32:52 -24242.398682] SLOW spr round 2 (radius: 5)
[11:33:50 -24240.067770] SLOW spr round 3 (radius: 5)
[11:34:45 -24240.066533] SLOW spr round 4 (radius: 10)
[11:35:38 -24240.066470] SLOW spr round 5 (radius: 15)
[11:36:53 -24239.276451] SLOW spr round 6 (radius: 5)
[11:38:03 -24239.113730] SLOW spr round 7 (radius: 5)
[11:39:05 -24239.112774] SLOW spr round 8 (radius: 10)
[11:40:01 -24239.112702] SLOW spr round 9 (radius: 15)
[11:41:13 -24239.112692] SLOW spr round 10 (radius: 20)
[11:42:38 -24239.112690] SLOW spr round 11 (radius: 25)
[11:44:20 -24236.357978] SLOW spr round 12 (radius: 5)
[11:45:32 -24236.347891] SLOW spr round 13 (radius: 10)
[11:46:35 -24236.345709] SLOW spr round 14 (radius: 15)
[11:47:45 -24236.345100] SLOW spr round 15 (radius: 20)
[11:49:14 -24236.344919] SLOW spr round 16 (radius: 25)
[11:51:00 -24236.344864] Model parameter optimization (eps = 0.100000)

[11:51:03] ML tree search #19, logLikelihood: -24236.319796

[11:51:03 -92635.036187] Initial branch length optimization
[11:51:04 -75736.409228] Model parameter optimization (eps = 10.000000)
[11:51:20 -75482.146552] AUTODETECT spr round 1 (radius: 5)
[11:52:15 -55297.181604] AUTODETECT spr round 2 (radius: 10)
[11:53:19 -41864.969975] AUTODETECT spr round 3 (radius: 15)
[11:54:27 -36784.288891] AUTODETECT spr round 4 (radius: 20)
[11:55:46 -34024.927398] AUTODETECT spr round 5 (radius: 25)
[11:57:04 -31462.389716] SPR radius for FAST iterations: 25 (autodetect)
[11:57:04 -31462.389716] Model parameter optimization (eps = 3.000000)
[11:57:42 -31434.114358] FAST spr round 1 (radius: 25)
[11:58:44 -26834.505731] FAST spr round 2 (radius: 25)
[11:59:37 -26625.441477] FAST spr round 3 (radius: 25)
[12:00:26 -26582.562791] FAST spr round 4 (radius: 25)
[12:01:13 -26574.525862] FAST spr round 5 (radius: 25)
[12:02:01 -26571.613863] FAST spr round 6 (radius: 25)
[12:02:47 -26571.612732] Model parameter optimization (eps = 1.000000)
[12:02:55 -26566.893840] SLOW spr round 1 (radius: 5)
[12:03:55 -26553.406474] SLOW spr round 2 (radius: 5)
[12:04:55 -26542.154757] SLOW spr round 3 (radius: 5)
[12:05:51 -26540.017547] SLOW spr round 4 (radius: 5)
[12:06:45 -26540.017498] SLOW spr round 5 (radius: 10)
[12:07:41 -26540.017498] SLOW spr round 6 (radius: 15)
[12:08:54 -26540.017498] SLOW spr round 7 (radius: 20)
[12:10:18 -26540.017498] SLOW spr round 8 (radius: 25)
[12:11:54 -26540.017498] Model parameter optimization (eps = 0.100000)

[12:11:57] ML tree search #20, logLikelihood: -26540.002842


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.174817,0.315224) (0.250908,0.324422) (0.256972,0.790733) (0.317302,2.080970) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -24096.580865

AIC score: 51363.161730 / AICc score: 5078983.161730 / BIC score: 54760.030272
Free parameters (model + branch lengths): 1585

WARNING: Number of free parameters (K=1585) is larger than alignment size (n=63).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 1 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q496M5/3_mltree/Q496M5.raxml.bestTreeCollapsed
Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q496M5/3_mltree/Q496M5.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q496M5/3_mltree/Q496M5.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q496M5/3_mltree/Q496M5.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q496M5/3_mltree/Q496M5.raxml.log

Analysis started: 05-Jul-2021 15:54:44 / finished: 06-Jul-2021 04:06:42

Elapsed time: 43917.678 seconds

Consumed energy: 2891.754 Wh (= 14 km in an electric car, or 72 km with an e-scooter!)