RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 02-Jul-2021 21:06:41 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q3ZCQ8/2_msa/Q3ZCQ8_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q3ZCQ8/3_mltree/Q3ZCQ8 --seed 2 --threads 3 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (3 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q3ZCQ8/2_msa/Q3ZCQ8_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 164 sites

WARNING: Sequences tr_B4Q4V6_B4Q4V6_DROSI_7240 and tr_B4III7_B4III7_DROSE_7238 are exactly identical!
WARNING: Sequences sp_Q9D880_TIM50_MOUSE_10090 and tr_D3ZJX5_D3ZJX5_RAT_10116 are exactly identical!
WARNING: Sequences tr_M3Z1Z7_M3Z1Z7_MUSPF_9669 and tr_D2HX74_D2HX74_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3Z1Z7_M3Z1Z7_MUSPF_9669 and tr_A0A2U3VMZ9_A0A2U3VMZ9_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3Z1Z7_M3Z1Z7_MUSPF_9669 and tr_A0A2U3YIP0_A0A2U3YIP0_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_M3Z1Z7_M3Z1Z7_MUSPF_9669 and tr_A0A2Y9L448_A0A2Y9L448_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3Z1Z7_M3Z1Z7_MUSPF_9669 and tr_A0A384BWP4_A0A384BWP4_URSMA_29073 are exactly identical!
WARNING: Sequences tr_G1RW11_G1RW11_NOMLE_61853 and tr_G3REU9_G3REU9_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1RW11_G1RW11_NOMLE_61853 and tr_A0A2J8QFJ6_A0A2J8QFJ6_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1RW11_G1RW11_NOMLE_61853 and sp_Q3ZCQ8_TIM50_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1RW11_G1RW11_NOMLE_61853 and tr_A0A1D5QRG0_A0A1D5QRG0_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1RW11_G1RW11_NOMLE_61853 and tr_F7ITE1_F7ITE1_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G1RW11_G1RW11_NOMLE_61853 and tr_A0A2I3N0U8_A0A2I3N0U8_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1RW11_G1RW11_NOMLE_61853 and tr_A0A3Q0DXY9_A0A3Q0DXY9_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G1RW11_G1RW11_NOMLE_61853 and tr_A0A2K5LII2_A0A2K5LII2_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1RW11_G1RW11_NOMLE_61853 and tr_A0A2K6BB05_A0A2K6BB05_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1RW11_G1RW11_NOMLE_61853 and tr_A0A2K5XYP8_A0A2K5XYP8_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1RW11_G1RW11_NOMLE_61853 and tr_A0A2R9CGD7_A0A2R9CGD7_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1Q4Z7_G1Q4Z7_MYOLU_59463 and tr_G1SGY8_G1SGY8_RABIT_9986 are exactly identical!
WARNING: Sequences tr_G1Q4Z7_G1Q4Z7_MYOLU_59463 and tr_W5P8B3_W5P8B3_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_G1Q4Z7_G1Q4Z7_MYOLU_59463 and tr_I3LC09_I3LC09_PIG_9823 are exactly identical!
WARNING: Sequences tr_G1Q4Z7_G1Q4Z7_MYOLU_59463 and tr_F6PR67_F6PR67_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_G1Q4Z7_G1Q4Z7_MYOLU_59463 and sp_Q3SZB3_TIM50_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_G1Q4Z7_G1Q4Z7_MYOLU_59463 and tr_L5L387_L5L387_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_J3KDP0_J3KDP0_COCIM_246410 and tr_E9D967_E9D967_COCPS_443226 are exactly identical!
WARNING: Sequences tr_J3KDP0_J3KDP0_COCIM_246410 and tr_A0A0J6YCR3_A0A0J6YCR3_COCIT_404692 are exactly identical!
WARNING: Sequences tr_B6QP66_B6QP66_TALMQ_441960 and tr_A0A093VE15_A0A093VE15_TALMA_1077442 are exactly identical!
WARNING: Sequences tr_B2WKX7_B2WKX7_PYRTR_426418 and tr_A0A2W1H9Q1_A0A2W1H9Q1_9PLEO_45151 are exactly identical!
WARNING: Sequences tr_G2X8T0_G2X8T0_VERDV_498257 and tr_A0A0G4LI57_A0A0G4LI57_9PEZI_100787 are exactly identical!
WARNING: Sequences tr_Q29HQ7_Q29HQ7_DROPS_46245 and tr_B4GYG7_B4GYG7_DROPE_7234 are exactly identical!
WARNING: Sequences tr_B8NLL7_B8NLL7_ASPFN_332952 and tr_Q2U6G6_Q2U6G6_ASPOR_510516 are exactly identical!
WARNING: Sequences tr_B8NLL7_B8NLL7_ASPFN_332952 and tr_A0A1S9D8S5_A0A1S9D8S5_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_C5FSH5_C5FSH5_ARTOC_554155 and tr_F2SWA9_F2SWA9_TRIRC_559305 are exactly identical!
WARNING: Sequences tr_C5FSH5_C5FSH5_ARTOC_554155 and tr_D4AVT3_D4AVT3_ARTBC_663331 are exactly identical!
WARNING: Sequences tr_C5FSH5_C5FSH5_ARTOC_554155 and tr_A0A178EZE9_A0A178EZE9_TRIRU_5551 are exactly identical!
WARNING: Sequences tr_A0A179UM23_A0A179UM23_BLAGS_559298 and tr_C5GBX2_C5GBX2_AJEDR_559297 are exactly identical!
WARNING: Sequences tr_A0A125YKD3_A0A125YKD3_TOXGV_432359 and tr_A0A074TLR4_A0A074TLR4_HAMHA_99158 are exactly identical!
WARNING: Sequences tr_E2RFI6_E2RFI6_CANLF_9615 and tr_A0A2I2UH56_A0A2I2UH56_FELCA_9685 are exactly identical!
WARNING: Sequences tr_F9FXM9_F9FXM9_FUSOF_660025 and tr_N4U2V5_N4U2V5_FUSC1_1229664 are exactly identical!
WARNING: Sequences tr_F9FXM9_F9FXM9_FUSOF_660025 and tr_X0C0M0_X0C0M0_FUSOX_1089458 are exactly identical!
WARNING: Sequences tr_F9FXM9_F9FXM9_FUSOF_660025 and tr_A0A2H3TAN6_A0A2H3TAN6_FUSOX_5507 are exactly identical!
WARNING: Sequences tr_F9FXM9_F9FXM9_FUSOF_660025 and tr_A0A2H3HKY1_A0A2H3HKY1_FUSOX_327505 are exactly identical!
WARNING: Sequences tr_C6H9P4_C6H9P4_AJECH_544712 and tr_F0UKK5_F0UKK5_AJEC8_544711 are exactly identical!
WARNING: Sequences tr_J4W3P0_J4W3P0_BEAB2_655819 and tr_A0A0A2WGZ0_A0A0A2WGZ0_BEABA_1245745 are exactly identical!
WARNING: Sequences tr_J4W3P0_J4W3P0_BEAB2_655819 and tr_A0A2N6NQA9_A0A2N6NQA9_BEABA_176275 are exactly identical!
WARNING: Sequences tr_A0A088AJ70_A0A088AJ70_APIME_7460 and tr_A0A2A3EU14_A0A2A3EU14_APICC_94128 are exactly identical!
WARNING: Sequences tr_I3LX99_I3LX99_ICTTR_43179 and tr_H0VW11_H0VW11_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_A0A0E0FTH7_A0A0E0FTH7_ORYNI_4536 and tr_B8A9U4_B8A9U4_ORYSI_39946 are exactly identical!
WARNING: Sequences tr_A0A0E0FTH7_A0A0E0FTH7_ORYNI_4536 and tr_A0A0E0N2T3_A0A0E0N2T3_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0E0FTH7_A0A0E0FTH7_ORYNI_4536 and tr_A0A0D9YFA9_A0A0D9YFA9_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_A0A0E0FTH7_A0A0E0FTH7_ORYNI_4536 and tr_A0A0P0V8I5_A0A0P0V8I5_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_A0A0E0HGV2_A0A0E0HGV2_ORYNI_4536 and tr_A2Y6G4_A2Y6G4_ORYSI_39946 are exactly identical!
WARNING: Sequences tr_A0A0E0HGV2_A0A0E0HGV2_ORYNI_4536 and tr_I1PX75_I1PX75_ORYGL_4538 are exactly identical!
WARNING: Sequences tr_A0A0E0HGV2_A0A0E0HGV2_ORYNI_4536 and tr_A0A0D3G9P8_A0A0D3G9P8_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_A0A0H5S8D3_A0A0H5S8D3_BRUMA_6279 and tr_A0A0N4SXW3_A0A0N4SXW3_BRUPA_6280 are exactly identical!
WARNING: Sequences tr_A0A0H5S8D3_A0A0H5S8D3_BRUMA_6279 and tr_A0A0R3QMJ5_A0A0R3QMJ5_9BILA_42155 are exactly identical!
WARNING: Sequences tr_A5AAY9_A5AAY9_ASPNC_425011 and tr_G7XE26_G7XE26_ASPKW_1033177 are exactly identical!
WARNING: Sequences tr_A5AAY9_A5AAY9_ASPNC_425011 and tr_G3XZB1_G3XZB1_ASPNA_380704 are exactly identical!
WARNING: Sequences tr_A5AAY9_A5AAY9_ASPNC_425011 and tr_A0A146F2C4_A0A146F2C4_9EURO_1069201 are exactly identical!
WARNING: Sequences tr_A5AAY9_A5AAY9_ASPNC_425011 and tr_A0A317W3W3_A0A317W3W3_9EURO_1448314 are exactly identical!
WARNING: Sequences tr_A5AAY9_A5AAY9_ASPNC_425011 and tr_A0A319B2Y5_A0A319B2Y5_9EURO_1450533 are exactly identical!
WARNING: Sequences tr_E5S5D3_E5S5D3_TRISP_6334 and tr_A0A0V1CWW3_A0A0V1CWW3_TRIBR_45882 are exactly identical!
WARNING: Sequences tr_E5S5D3_E5S5D3_TRISP_6334 and tr_A0A0V0X119_A0A0V0X119_9BILA_92179 are exactly identical!
WARNING: Sequences tr_E5S5D3_E5S5D3_TRISP_6334 and tr_A0A0V0VNP7_A0A0V0VNP7_9BILA_181606 are exactly identical!
WARNING: Sequences tr_E5S5D3_E5S5D3_TRISP_6334 and tr_A0A0V1KYN7_A0A0V1KYN7_9BILA_6335 are exactly identical!
WARNING: Sequences tr_E5S5D3_E5S5D3_TRISP_6334 and tr_A0A0V0ZNN8_A0A0V0ZNN8_9BILA_990121 are exactly identical!
WARNING: Sequences tr_E5S5D3_E5S5D3_TRISP_6334 and tr_A0A0V1PGG0_A0A0V1PGG0_9BILA_92180 are exactly identical!
WARNING: Sequences tr_E5S5D3_E5S5D3_TRISP_6334 and tr_A0A0V0TZW3_A0A0V0TZW3_9BILA_144512 are exactly identical!
WARNING: Sequences tr_W4YIC0_W4YIC0_STRPU_7668 and tr_W4Z8E4_W4Z8E4_STRPU_7668 are exactly identical!
WARNING: Sequences tr_H1W423_H1W423_COLHI_759273 and tr_A0A166UMU6_A0A166UMU6_9PEZI_708197 are exactly identical!
WARNING: Sequences tr_H1W423_H1W423_COLHI_759273 and tr_A0A166ZJW5_A0A166ZJW5_9PEZI_1573173 are exactly identical!
WARNING: Sequences tr_E6QXY8_E6QXY8_CRYGW_367775 and tr_A0A095D2C8_A0A095D2C8_CRYGR_294750 are exactly identical!
WARNING: Sequences tr_A0A0E0PPW2_A0A0E0PPW2_ORYRU_4529 and tr_Q0DGT4_Q0DGT4_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_F9WYP4_F9WYP4_ZYMTI_336722 and tr_A0A0F4GTM5_A0A0F4GTM5_9PEZI_1047168 are exactly identical!
WARNING: Sequences tr_F9WYP4_F9WYP4_ZYMTI_336722 and tr_A0A1X7RCS7_A0A1X7RCS7_ZYMTR_1276538 are exactly identical!
WARNING: Sequences tr_G2YPR4_G2YPR4_BOTF4_999810 and tr_M7TT16_M7TT16_BOTF1_1290391 are exactly identical!
WARNING: Sequences tr_E3MQW3_E3MQW3_CAERE_31234 and tr_A0A1I7U715_A0A1I7U715_9PELO_1561998 are exactly identical!
WARNING: Sequences tr_E3MQW3_E3MQW3_CAERE_31234 and tr_A0A261BW34_A0A261BW34_9PELO_1503980 are exactly identical!
WARNING: Sequences tr_E3MQW3_E3MQW3_CAERE_31234 and tr_A0A2G5TID9_A0A2G5TID9_9PELO_1611254 are exactly identical!
WARNING: Sequences tr_E3K2P1_E3K2P1_PUCGT_418459 and tr_E3NXP7_E3NXP7_PUCGT_418459 are exactly identical!
WARNING: Sequences tr_A0A0R0G7K6_A0A0R0G7K6_SOYBN_3847 and tr_I1JJI9_I1JJI9_SOYBN_3847 are exactly identical!
WARNING: Sequences tr_A0A3Q0KDE5_A0A3Q0KDE5_SCHMA_6183 and tr_G4VQ87_G4VQ87_SCHMA_6183 are exactly identical!
WARNING: Sequences tr_G0R8Q0_G0R8Q0_HYPJQ_431241 and tr_A0A2T4CBU1_A0A2T4CBU1_TRILO_983965 are exactly identical!
WARNING: Sequences tr_B3S0K7_B3S0K7_TRIAD_10228 and tr_A0A369SD43_A0A369SD43_9METZ_287889 are exactly identical!
WARNING: Sequences tr_F2PI65_F2PI65_TRIEC_559882 and tr_A0A059JFU6_A0A059JFU6_9EURO_1215338 are exactly identical!
WARNING: Sequences tr_K9FIK0_K9FIK0_PEND2_1170229 and tr_A0A0A2KYF0_A0A0A2KYF0_PENIT_40296 are exactly identical!
WARNING: Sequences tr_K9FIK0_K9FIK0_PEND2_1170229 and tr_A0A0A2I9D6_A0A0A2I9D6_PENEN_27334 are exactly identical!
WARNING: Sequences tr_K9FIK0_K9FIK0_PEND2_1170229 and tr_A0A0G4NTA0_A0A0G4NTA0_PENCA_1429867 are exactly identical!
WARNING: Sequences tr_K9FIK0_K9FIK0_PEND2_1170229 and tr_A0A117NSM1_A0A117NSM1_9EURO_48697 are exactly identical!
WARNING: Sequences tr_K9FIK0_K9FIK0_PEND2_1170229 and tr_A0A135LDU3_A0A135LDU3_PENPA_5078 are exactly identical!
WARNING: Sequences tr_K9FIK0_K9FIK0_PEND2_1170229 and tr_A0A1V6NQC6_A0A1V6NQC6_9EURO_60169 are exactly identical!
WARNING: Sequences tr_K9FIK0_K9FIK0_PEND2_1170229 and tr_A0A1V6RHW9_A0A1V6RHW9_9EURO_60172 are exactly identical!
WARNING: Sequences tr_L0PCK8_L0PCK8_PNEJ8_1209962 and tr_A0A0W4ZKZ4_A0A0W4ZKZ4_PNEJ7_1408657 are exactly identical!
WARNING: Sequences tr_L8G028_L8G028_PSED2_658429 and tr_A0A094DS74_A0A094DS74_9PEZI_1420910 are exactly identical!
WARNING: Sequences tr_L8G028_L8G028_PSED2_658429 and tr_A0A094H636_A0A094H636_9PEZI_1420912 are exactly identical!
WARNING: Sequences tr_L8G028_L8G028_PSED2_658429 and tr_A0A1B8GQ43_A0A1B8GQ43_9PEZI_342668 are exactly identical!
WARNING: Sequences tr_L8G028_L8G028_PSED2_658429 and tr_A0A1B8C944_A0A1B8C944_9PEZI_1622147 are exactly identical!
WARNING: Sequences tr_L8G028_L8G028_PSED2_658429 and tr_A0A1B8ELE6_A0A1B8ELE6_9PEZI_1622149 are exactly identical!
WARNING: Sequences tr_M4EPV6_M4EPV6_BRARP_51351 and tr_A0A078FEN0_A0A078FEN0_BRANA_3708 are exactly identical!
WARNING: Sequences tr_M4EPV6_M4EPV6_BRARP_51351 and tr_A0A078HYH4_A0A078HYH4_BRANA_3708 are exactly identical!
WARNING: Sequences tr_M4EPV6_M4EPV6_BRARP_51351 and tr_A0A0D3BND3_A0A0D3BND3_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_M7YE38_M7YE38_TRIUA_4572 and tr_A0A3B6ELD8_A0A3B6ELD8_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_M7YE38_M7YE38_TRIUA_4572 and tr_A0A3B6GZ87_A0A3B6GZ87_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_T1LFI1_T1LFI1_TRIUA_4572 and tr_A0A3B5Y442_A0A3B5Y442_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_M2UPW3_M2UPW3_COCH5_701091 and tr_W6YKB6_W6YKB6_COCCA_930089 are exactly identical!
WARNING: Sequences tr_W9VHZ7_W9VHZ7_9EURO_1182544 and tr_A0A1C1C773_A0A1C1C773_9EURO_86049 are exactly identical!
WARNING: Sequences tr_A0A017SM31_A0A017SM31_9EURO_1388766 and tr_A0A1L9VSR7_A0A1L9VSR7_ASPGL_1160497 are exactly identical!
WARNING: Sequences tr_A0A010QWE7_A0A010QWE7_9PEZI_1445577 and tr_A0A135UDK6_A0A135UDK6_9PEZI_1209931 are exactly identical!
WARNING: Sequences tr_A0A015IWV7_A0A015IWV7_9GLOM_1432141 and tr_A0A2I1G768_A0A2I1G768_9GLOM_588596 are exactly identical!
WARNING: Sequences tr_A0A015IWV7_A0A015IWV7_9GLOM_1432141 and tr_A0A2H5SWN1_A0A2H5SWN1_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A044UE74_A0A044UE74_ONCVO_6282 and tr_A0A183GZ25_A0A183GZ25_9BILA_387005 are exactly identical!
WARNING: Sequences tr_A0A044UE74_A0A044UE74_ONCVO_6282 and tr_A0A182E9S1_A0A182E9S1_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A067EYZ3_A0A067EYZ3_CITSI_2711 and tr_V4WGL3_V4WGL3_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_V4S6S1_V4S6S1_9ROSI_85681 and tr_A0A2H5N630_A0A2H5N630_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A0D2Q3C3_A0A0D2Q3C3_GOSRA_29730 and tr_A0A1U8KZ62_A0A1U8KZ62_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2QR48_A0A0D2QR48_GOSRA_29730 and tr_A0A1U8KMT9_A0A1U8KMT9_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2QR48_A0A0D2QR48_GOSRA_29730 and tr_A0A1U8LGB7_A0A1U8LGB7_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2STY3_A0A0D2STY3_GOSRA_29730 and tr_A0A1U8IYT7_A0A1U8IYT7_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2U4Y4_A0A0D2U4Y4_GOSRA_29730 and tr_A0A1U8KVH0_A0A1U8KVH0_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0F0IRD1_A0A0F0IRD1_ASPPU_1403190 and tr_A0A2G7FRI5_A0A2G7FRI5_9EURO_656916 are exactly identical!
WARNING: Sequences tr_A0A0G0AJZ0_A0A0G0AJZ0_TRIHA_5544 and tr_A0A2T4AJ16_A0A2T4AJ16_TRIHA_983964 are exactly identical!
WARNING: Sequences tr_A0A0F8UYM2_A0A0F8UYM2_9EURO_308745 and tr_A0A2T5M938_A0A2T5M938_9EURO_1392256 are exactly identical!
WARNING: Sequences tr_A0A0W8DY62_A0A0W8DY62_PHYNI_4790 and tr_W2K108_W2K108_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_A0A0L0RW26_A0A0L0RW26_ALLMA_578462 and tr_A0A0L0SS66_A0A0L0SS66_ALLMA_578462 are exactly identical!
WARNING: Sequences tr_A0A100ID22_A0A100ID22_ASPNG_5061 and tr_A0A1L9MZ95_A0A1L9MZ95_ASPTU_767770 are exactly identical!
WARNING: Sequences tr_A0A164NZY7_A0A164NZY7_9HOMO_1314777 and tr_A0A165Z1N1_A0A165Z1N1_9HOMO_1314776 are exactly identical!
WARNING: Sequences tr_A0A1S4CGG2_A0A1S4CGG2_TOBAC_4097 and tr_A0A1U7VIA5_A0A1U7VIA5_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1L9X445_A0A1L9X445_ASPAC_690307 and tr_A0A319DYX0_A0A319DYX0_9EURO_1448315 are exactly identical!
WARNING: Sequences tr_A0A1R3RNI1_A0A1R3RNI1_ASPC5_602072 and tr_A0A317VKL6_A0A317VKL6_9EURO_1450535 are exactly identical!
WARNING: Sequences tr_A0A1V8TSH8_A0A1V8TSH8_9PEZI_1507870 and tr_A0A1V8TUH7_A0A1V8TUH7_9PEZI_1507870 are exactly identical!
WARNING: Sequences tr_A0A2H3BUZ7_A0A2H3BUZ7_9AGAR_1076256 and tr_A0A284REY2_A0A284REY2_9AGAR_47428 are exactly identical!
WARNING: Sequences tr_A0A1U8EN68_A0A1U8EN68_CAPAN_4072 and tr_A0A2G3BC84_A0A2G3BC84_CAPCH_80379 are exactly identical!
WARNING: Sequences tr_A0A2G5H811_A0A2G5H811_CERBT_122368 and tr_A0A2S6BRD8_A0A2S6BRD8_9PEZI_357750 are exactly identical!
WARNING: Sequences tr_A0A2N5SJA1_A0A2N5SJA1_9BASI_200324 and tr_A0A2N5UW37_A0A2N5UW37_9BASI_200324 are exactly identical!
WARNING: Sequences tr_A0A2S7Q1A8_A0A2S7Q1A8_9HELO_2070414 and tr_A0A2S7Q928_A0A2S7Q928_9HELO_2070412 are exactly identical!
WARNING: Sequences tr_A0A2U4BU27_A0A2U4BU27_TURTR_9739 and tr_A0A2Y9P5M9_A0A2Y9P5M9_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4BU27_A0A2U4BU27_TURTR_9739 and tr_A0A2Y9F3R6_A0A2Y9F3R6_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2U4BU27_A0A2U4BU27_TURTR_9739 and tr_A0A383ZY36_A0A383ZY36_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A318ZBS1_A0A318ZBS1_9EURO_1450539 and tr_A0A2V5IRQ2_A0A2V5IRQ2_9EURO_1450541 are exactly identical!
WARNING: Sequences tr_A0A318ZBS1_A0A318ZBS1_9EURO_1450539 and tr_A0A395HV55_A0A395HV55_9EURO_1450537 are exactly identical!
WARNING: Sequences tr_A0A318ZBS1_A0A318ZBS1_9EURO_1450539 and tr_A0A2V5GQ22_A0A2V5GQ22_9EURO_1450538 are exactly identical!
WARNING: Duplicate sequences found: 141

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q3ZCQ8/3_mltree/Q3ZCQ8.raxml.reduced.phy

Alignment comprises 1 partitions and 164 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 164 / 164
Gaps: 1.49 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q3ZCQ8/3_mltree/Q3ZCQ8.raxml.rba

Parallelization scheme autoconfig: 3 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 164 / 13120
[00:00:00] Data distribution: max. searches per worker: 7

Starting ML tree search with 20 distinct starting trees

[00:00:00 -264694.232882] Initial branch length optimization
[00:00:03 -223826.007835] Model parameter optimization (eps = 10.000000)
[00:00:37 -223360.049118] AUTODETECT spr round 1 (radius: 5)
[00:03:01 -157814.010141] AUTODETECT spr round 2 (radius: 10)
[00:05:47 -111462.983265] AUTODETECT spr round 3 (radius: 15)
[00:08:31 -95611.872944] AUTODETECT spr round 4 (radius: 20)
[00:11:40 -87524.781116] AUTODETECT spr round 5 (radius: 25)
[00:15:39 -85126.162187] SPR radius for FAST iterations: 25 (autodetect)
[00:15:39 -85126.162187] Model parameter optimization (eps = 3.000000)
[00:16:01 -85040.540135] FAST spr round 1 (radius: 25)
[00:18:39 -71496.043424] FAST spr round 2 (radius: 25)
[00:20:43 -69645.933996] FAST spr round 3 (radius: 25)
[00:22:39 -68675.838462] FAST spr round 4 (radius: 25)
[00:24:29 -68453.974392] FAST spr round 5 (radius: 25)
[00:26:09 -68436.242102] FAST spr round 6 (radius: 25)
[00:27:45 -68436.242033] Model parameter optimization (eps = 1.000000)
[00:28:00 -68432.511411] SLOW spr round 1 (radius: 5)
[00:30:09 -68416.784273] SLOW spr round 2 (radius: 5)
[00:32:14 -68414.222497] SLOW spr round 3 (radius: 5)
[00:34:18 -68412.978822] SLOW spr round 4 (radius: 5)
[00:36:21 -68408.586244] SLOW spr round 5 (radius: 5)
[00:38:21 -68408.067811] SLOW spr round 6 (radius: 5)
[00:40:20 -68406.533947] SLOW spr round 7 (radius: 5)
[00:42:19 -68406.533932] SLOW spr round 8 (radius: 10)
[00:44:21 -68406.533922] SLOW spr round 9 (radius: 15)
[00:47:21 -68406.533922] SLOW spr round 10 (radius: 20)
[00:51:17 -68406.533922] SLOW spr round 11 (radius: 25)
[00:54:23] [worker #1] ML tree search #2, logLikelihood: -68394.220886
[00:56:26 -68406.533922] Model parameter optimization (eps = 0.100000)

[00:56:32] [worker #0] ML tree search #1, logLikelihood: -68406.523380

[00:56:32 -264299.664040] Initial branch length optimization
[00:56:35 -224257.059457] Model parameter optimization (eps = 10.000000)
[00:57:05 -223746.640743] AUTODETECT spr round 1 (radius: 5)
[00:59:30 -159302.804155] AUTODETECT spr round 2 (radius: 10)
[01:02:20 -114276.254562] AUTODETECT spr round 3 (radius: 15)
[01:05:05 -90211.781746] AUTODETECT spr round 4 (radius: 20)
[01:05:25] [worker #2] ML tree search #3, logLikelihood: -68392.162216
[01:07:59 -85068.653399] AUTODETECT spr round 5 (radius: 25)
[01:11:42 -82752.257650] SPR radius for FAST iterations: 25 (autodetect)
[01:11:42 -82752.257650] Model parameter optimization (eps = 3.000000)
[01:12:02 -82632.314670] FAST spr round 1 (radius: 25)
[01:14:34 -69170.807638] FAST spr round 2 (radius: 25)
[01:16:29 -68497.851130] FAST spr round 3 (radius: 25)
[01:18:19 -68452.784715] FAST spr round 4 (radius: 25)
[01:20:00 -68446.291449] FAST spr round 5 (radius: 25)
[01:21:37 -68446.291429] Model parameter optimization (eps = 1.000000)
[01:21:49 -68444.133891] SLOW spr round 1 (radius: 5)
[01:23:59 -68423.292269] SLOW spr round 2 (radius: 5)
[01:26:05 -68419.820808] SLOW spr round 3 (radius: 5)
[01:28:11 -68419.530692] SLOW spr round 4 (radius: 5)
[01:30:12 -68419.530660] SLOW spr round 5 (radius: 10)
[01:32:16 -68417.827090] SLOW spr round 6 (radius: 5)
[01:34:48 -68417.825219] SLOW spr round 7 (radius: 10)
[01:37:00 -68417.825055] SLOW spr round 8 (radius: 15)
[01:39:55 -68417.825041] SLOW spr round 9 (radius: 20)
[01:43:48 -68413.232082] SLOW spr round 10 (radius: 5)
[01:45:26] [worker #1] ML tree search #5, logLikelihood: -68417.705479
[01:46:27 -68413.232069] SLOW spr round 11 (radius: 10)
[01:48:43 -68413.232069] SLOW spr round 12 (radius: 15)
[01:51:34 -68413.232069] SLOW spr round 13 (radius: 20)
[01:55:26 -68413.232069] SLOW spr round 14 (radius: 25)
[02:00:19 -68413.232069] Model parameter optimization (eps = 0.100000)

[02:00:25] [worker #0] ML tree search #4, logLikelihood: -68413.159262

[02:00:25 -262710.790291] Initial branch length optimization
[02:00:28 -221804.936673] Model parameter optimization (eps = 10.000000)
[02:00:56 -221354.152176] AUTODETECT spr round 1 (radius: 5)
[02:03:14 -160271.248784] AUTODETECT spr round 2 (radius: 10)
[02:05:54 -111824.270541] AUTODETECT spr round 3 (radius: 15)
[02:07:41] [worker #2] ML tree search #6, logLikelihood: -68392.560954
[02:08:32 -90544.124436] AUTODETECT spr round 4 (radius: 20)
[02:11:48 -82167.575881] AUTODETECT spr round 5 (radius: 25)
[02:15:39 -81462.590532] SPR radius for FAST iterations: 25 (autodetect)
[02:15:39 -81462.590532] Model parameter optimization (eps = 3.000000)
[02:16:09 -81391.777326] FAST spr round 1 (radius: 25)
[02:18:45 -69534.651815] FAST spr round 2 (radius: 25)
[02:20:51 -68795.490862] FAST spr round 3 (radius: 25)
[02:22:39 -68503.005838] FAST spr round 4 (radius: 25)
[02:24:24 -68431.331298] FAST spr round 5 (radius: 25)
[02:26:00 -68431.331228] Model parameter optimization (eps = 1.000000)
[02:26:15 -68424.035886] SLOW spr round 1 (radius: 5)
[02:28:26 -68410.389704] SLOW spr round 2 (radius: 5)
[02:30:29 -68408.100280] SLOW spr round 3 (radius: 5)
[02:32:28 -68408.100193] SLOW spr round 4 (radius: 10)
[02:34:28 -68408.100192] SLOW spr round 5 (radius: 15)
[02:36:01] [worker #1] ML tree search #8, logLikelihood: -68419.222377
[02:37:28 -68407.474122] SLOW spr round 6 (radius: 5)
[02:40:03 -68407.474073] SLOW spr round 7 (radius: 10)
[02:42:19 -68407.474073] SLOW spr round 8 (radius: 15)
[02:45:08 -68407.474073] SLOW spr round 9 (radius: 20)
[02:49:14 -68407.474073] SLOW spr round 10 (radius: 25)
[02:54:34 -68407.474073] Model parameter optimization (eps = 0.100000)

[02:54:40] [worker #0] ML tree search #7, logLikelihood: -68407.464152

[02:54:40 -266317.197642] Initial branch length optimization
[02:54:43 -224786.261802] Model parameter optimization (eps = 10.000000)
[02:55:29 -224292.863239] AUTODETECT spr round 1 (radius: 5)
[02:57:50 -156328.668902] AUTODETECT spr round 2 (radius: 10)
[03:00:36 -114044.310019] AUTODETECT spr round 3 (radius: 15)
[03:01:52] [worker #2] ML tree search #9, logLikelihood: -68429.012710
[03:03:19 -95405.547184] AUTODETECT spr round 4 (radius: 20)
[03:06:33 -88849.751303] AUTODETECT spr round 5 (radius: 25)
[03:10:56 -84415.993049] SPR radius for FAST iterations: 25 (autodetect)
[03:10:56 -84415.993049] Model parameter optimization (eps = 3.000000)
[03:11:26 -84324.371409] FAST spr round 1 (radius: 25)
[03:14:07 -69404.097064] FAST spr round 2 (radius: 25)
[03:16:13 -68500.251852] FAST spr round 3 (radius: 25)
[03:18:03 -68461.626318] FAST spr round 4 (radius: 25)
[03:19:46 -68448.263627] FAST spr round 5 (radius: 25)
[03:21:23 -68445.396085] FAST spr round 6 (radius: 25)
[03:23:00 -68438.816045] FAST spr round 7 (radius: 25)
[03:24:34 -68438.816029] Model parameter optimization (eps = 1.000000)
[03:24:47 -68437.263346] SLOW spr round 1 (radius: 5)
[03:26:59 -68413.644231] SLOW spr round 2 (radius: 5)
[03:29:02 -68411.698097] SLOW spr round 3 (radius: 5)
[03:31:01 -68411.697179] SLOW spr round 4 (radius: 10)
[03:33:02 -68411.697152] SLOW spr round 5 (radius: 15)
[03:36:09 -68410.597200] SLOW spr round 6 (radius: 5)
[03:38:48 -68406.842021] SLOW spr round 7 (radius: 5)
[03:41:03 -68406.841727] SLOW spr round 8 (radius: 10)
[03:43:06 -68401.438115] SLOW spr round 9 (radius: 5)
[03:45:33 -68400.686751] SLOW spr round 10 (radius: 5)
[03:47:44 -68400.686658] SLOW spr round 11 (radius: 10)
[03:49:03] [worker #1] ML tree search #11, logLikelihood: -68447.332362
[03:49:44 -68400.686658] SLOW spr round 12 (radius: 15)
[03:52:46 -68400.686658] SLOW spr round 13 (radius: 20)
[03:57:10 -68400.686658] SLOW spr round 14 (radius: 25)
[03:58:40] [worker #2] ML tree search #12, logLikelihood: -68421.194348
[04:02:48 -68400.686658] Model parameter optimization (eps = 0.100000)

[04:02:59] [worker #0] ML tree search #10, logLikelihood: -68399.172523

[04:02:59 -265555.461832] Initial branch length optimization
[04:03:02 -225238.720105] Model parameter optimization (eps = 10.000000)
[04:03:31 -224819.069032] AUTODETECT spr round 1 (radius: 5)
[04:05:56 -155151.665996] AUTODETECT spr round 2 (radius: 10)
[04:08:37 -120831.576226] AUTODETECT spr round 3 (radius: 15)
[04:11:34 -101472.443407] AUTODETECT spr round 4 (radius: 20)
[04:14:49 -88746.407420] AUTODETECT spr round 5 (radius: 25)
[04:18:16 -84922.973209] SPR radius for FAST iterations: 25 (autodetect)
[04:18:16 -84922.973209] Model parameter optimization (eps = 3.000000)
[04:18:37 -84867.050416] FAST spr round 1 (radius: 25)
[04:21:13 -69224.505253] FAST spr round 2 (radius: 25)
[04:23:08 -68478.784370] FAST spr round 3 (radius: 25)
[04:24:55 -68457.332719] FAST spr round 4 (radius: 25)
[04:26:33 -68444.778117] FAST spr round 5 (radius: 25)
[04:28:06 -68444.777368] Model parameter optimization (eps = 1.000000)
[04:28:33 -68440.656650] SLOW spr round 1 (radius: 5)
[04:30:38 -68418.626372] SLOW spr round 2 (radius: 5)
[04:32:42 -68412.878519] SLOW spr round 3 (radius: 5)
[04:34:45 -68412.117697] SLOW spr round 4 (radius: 5)
[04:36:43 -68412.117368] SLOW spr round 5 (radius: 10)
[04:37:30] [worker #1] ML tree search #14, logLikelihood: -68379.185494
[04:38:52 -68412.117357] SLOW spr round 6 (radius: 15)
[04:41:58 -68412.117357] SLOW spr round 7 (radius: 20)
[04:46:01 -68412.117357] SLOW spr round 8 (radius: 25)
[04:48:08] [worker #2] ML tree search #15, logLikelihood: -68398.172059
[04:51:07 -68412.117357] Model parameter optimization (eps = 0.100000)

[04:51:16] [worker #0] ML tree search #13, logLikelihood: -68411.725631

[04:51:16 -266083.963569] Initial branch length optimization
[04:51:19 -224393.054988] Model parameter optimization (eps = 10.000000)
[04:51:53 -223882.101867] AUTODETECT spr round 1 (radius: 5)
[04:54:14 -156216.763023] AUTODETECT spr round 2 (radius: 10)
[04:56:57 -112575.880602] AUTODETECT spr round 3 (radius: 15)
[04:59:36 -92307.478731] AUTODETECT spr round 4 (radius: 20)
[05:03:07 -83826.170824] AUTODETECT spr round 5 (radius: 25)
[05:07:35 -81665.958853] SPR radius for FAST iterations: 25 (autodetect)
[05:07:35 -81665.958853] Model parameter optimization (eps = 3.000000)
[05:07:56 -81603.491044] FAST spr round 1 (radius: 25)
[05:10:29 -69323.089253] FAST spr round 2 (radius: 25)
[05:12:33 -68603.964771] FAST spr round 3 (radius: 25)
[05:14:25 -68436.363133] FAST spr round 4 (radius: 25)
[05:16:06 -68418.884061] FAST spr round 5 (radius: 25)
[05:17:41 -68417.426361] FAST spr round 6 (radius: 25)
[05:19:15 -68417.426359] Model parameter optimization (eps = 1.000000)
[05:19:29 -68415.201629] SLOW spr round 1 (radius: 5)
[05:21:38 -68402.968903] SLOW spr round 2 (radius: 5)
[05:23:41 -68402.930246] SLOW spr round 3 (radius: 10)
[05:25:40 -68402.930063] SLOW spr round 4 (radius: 15)
[05:28:39 -68402.930061] SLOW spr round 5 (radius: 20)
[05:32:51 -68402.930061] SLOW spr round 6 (radius: 25)
[05:33:23] [worker #2] ML tree search #18, logLikelihood: -68441.655715
[05:38:16 -68402.930061] Model parameter optimization (eps = 0.100000)

[05:38:29] [worker #0] ML tree search #16, logLikelihood: -68402.699683

[05:38:29 -263849.815119] Initial branch length optimization
[05:38:32 -222788.037070] Model parameter optimization (eps = 10.000000)
[05:39:01 -222308.530008] AUTODETECT spr round 1 (radius: 5)
[05:41:25 -156774.060511] AUTODETECT spr round 2 (radius: 10)
[05:44:04 -114265.468453] AUTODETECT spr round 3 (radius: 15)
[05:46:56 -93897.856706] AUTODETECT spr round 4 (radius: 20)
[05:50:23 -82738.061926] AUTODETECT spr round 5 (radius: 25)
[05:51:36] [worker #1] ML tree search #17, logLikelihood: -68428.434270
[05:53:54 -81196.096045] SPR radius for FAST iterations: 25 (autodetect)
[05:53:54 -81196.096045] Model parameter optimization (eps = 3.000000)
[05:54:18 -81104.297147] FAST spr round 1 (radius: 25)
[05:56:48 -68968.451579] FAST spr round 2 (radius: 25)
[05:58:47 -68519.000127] FAST spr round 3 (radius: 25)
[06:00:34 -68481.642534] FAST spr round 4 (radius: 25)
[06:02:14 -68476.034040] FAST spr round 5 (radius: 25)
[06:03:51 -68467.066169] FAST spr round 6 (radius: 25)
[06:05:26 -68461.326782] FAST spr round 7 (radius: 25)
[06:06:59 -68461.326483] Model parameter optimization (eps = 1.000000)
[06:07:15 -68458.723439] SLOW spr round 1 (radius: 5)
[06:09:22 -68438.836198] SLOW spr round 2 (radius: 5)
[06:11:27 -68432.120335] SLOW spr round 3 (radius: 5)
[06:13:27 -68428.127548] SLOW spr round 4 (radius: 5)
[06:15:28 -68421.464235] SLOW spr round 5 (radius: 5)
[06:17:28 -68420.669462] SLOW spr round 6 (radius: 5)
[06:19:28 -68419.773468] SLOW spr round 7 (radius: 5)
[06:21:25 -68419.773228] SLOW spr round 8 (radius: 10)
[06:23:25 -68419.773223] SLOW spr round 9 (radius: 15)
[06:26:27 -68419.773222] SLOW spr round 10 (radius: 20)
[06:30:28 -68419.773222] SLOW spr round 11 (radius: 25)
[06:35:29 -68419.773222] Model parameter optimization (eps = 0.100000)

[06:35:44] [worker #0] ML tree search #19, logLikelihood: -68419.265487

[06:39:12] [worker #1] ML tree search #20, logLikelihood: -68419.283070

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.199420,0.353208) (0.261233,0.590407) (0.335152,0.952325) (0.204196,2.233916) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -68379.185494

AIC score: 140768.370989 / AICc score: 8184828.370989 / BIC score: 146983.603177
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=164).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q3ZCQ8/3_mltree/Q3ZCQ8.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q3ZCQ8/3_mltree/Q3ZCQ8.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q3ZCQ8/3_mltree/Q3ZCQ8.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q3ZCQ8/3_mltree/Q3ZCQ8.raxml.log

Analysis started: 02-Jul-2021 21:06:41 / finished: 03-Jul-2021 03:45:53

Elapsed time: 23952.487 seconds

Consumed energy: 2221.228 Wh (= 11 km in an electric car, or 56 km with an e-scooter!)