RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 03-Jul-2021 02:11:01 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q330K2/2_msa/Q330K2_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q330K2/3_mltree/Q330K2 --seed 2 --threads 6 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (6 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q330K2/2_msa/Q330K2_trimmed_msa.fasta
[00:00:00] Loaded alignment with 695 taxa and 275 sites

WARNING: Sequences tr_J3K232_J3K232_COCIM_246410 and tr_E9D2R1_E9D2R1_COCPS_443226 are exactly identical!
WARNING: Sequences tr_D8QXA7_D8QXA7_SELML_88036 and tr_D8SY49_D8SY49_SELML_88036 are exactly identical!
WARNING: Sequences tr_B8NKW4_B8NKW4_ASPFN_332952 and tr_Q2U644_Q2U644_ASPOR_510516 are exactly identical!
WARNING: Sequences tr_B8NKW4_B8NKW4_ASPFN_332952 and tr_A0A1S9D8H0_A0A1S9D8H0_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_B8NKW4_B8NKW4_ASPFN_332952 and tr_A0A2G7G264_A0A2G7G264_9EURO_656916 are exactly identical!
WARNING: Sequences tr_A0A179UY11_A0A179UY11_BLAGS_559298 and tr_C5GL90_C5GL90_AJEDR_559297 are exactly identical!
WARNING: Sequences sp_Q330K2_NDUF6_HUMAN_9606 and tr_A0A2R8ZCF7_A0A2R8ZCF7_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A0E0HJL8_A0A0E0HJL8_ORYNI_4536 and tr_B8B1A3_B8B1A3_ORYSI_39946 are exactly identical!
WARNING: Sequences tr_A0A0E0HJL8_A0A0E0HJL8_ORYNI_4536 and tr_A0A0E0DVH1_A0A0E0DVH1_9ORYZ_40149 are exactly identical!
WARNING: Sequences tr_A0A0E0HJL8_A0A0E0HJL8_ORYNI_4536 and tr_A0A0E0PSD9_A0A0E0PSD9_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_A0A0E0HJL8_A0A0E0HJL8_ORYNI_4536 and tr_Q8H625_Q8H625_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_G7XZQ7_G7XZQ7_ASPKW_1033177 and tr_A0A146F4R4_A0A146F4R4_9EURO_1069201 are exactly identical!
WARNING: Sequences tr_G7XZQ7_G7XZQ7_ASPKW_1033177 and tr_A0A1L9NEE6_A0A1L9NEE6_ASPTU_767770 are exactly identical!
WARNING: Sequences tr_G3XMH1_G3XMH1_ASPNA_380704 and tr_A0A319ALP7_A0A319ALP7_9EURO_1450533 are exactly identical!
WARNING: Sequences tr_M4EE13_M4EE13_BRARP_51351 and tr_A0A078I7L6_A0A078I7L6_BRANA_3708 are exactly identical!
WARNING: Sequences tr_A0A015M418_A0A015M418_9GLOM_1432141 and tr_A0A2H5RSG4_A0A2H5RSG4_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A067DZI9_A0A067DZI9_CITSI_2711 and tr_V4TPJ5_V4TPJ5_9ROSI_85681 are exactly identical!
WARNING: Sequences tr_A0A096NDH6_A0A096NDH6_PAPAN_9555 and tr_A0A2K5LG73_A0A2K5LG73_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A078H227_A0A078H227_BRANA_3708 and tr_A0A0D3E4P9_A0A0D3E4P9_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_A0A0V0W5Y7_A0A0V0W5Y7_9BILA_92179 and tr_A0A0V0TD26_A0A0V0TD26_9BILA_144512 are exactly identical!
WARNING: Sequences tr_A0A1S4CJ47_A0A1S4CJ47_TOBAC_4097 and tr_A0A1U7Y775_A0A1U7Y775_NICSY_4096 are exactly identical!
WARNING: Duplicate sequences found: 21

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q330K2/3_mltree/Q330K2.raxml.reduced.phy

Alignment comprises 1 partitions and 275 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 275 / 275
Gaps: 5.81 %
Invariant sites: 0.36 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q330K2/3_mltree/Q330K2.raxml.rba

Parallelization scheme autoconfig: 6 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 695 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 275 / 22000
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -342493.275039] Initial branch length optimization
[00:00:05 -294037.082708] Model parameter optimization (eps = 10.000000)
[00:00:43 -292903.975402] AUTODETECT spr round 1 (radius: 5)
[00:02:38 -203945.045139] AUTODETECT spr round 2 (radius: 10)
[00:04:42 -149330.117818] AUTODETECT spr round 3 (radius: 15)
[00:07:04 -135381.811479] AUTODETECT spr round 4 (radius: 20)
[00:10:15 -126634.046909] AUTODETECT spr round 5 (radius: 25)
[00:14:18 -126142.603961] SPR radius for FAST iterations: 25 (autodetect)
[00:14:18 -126142.603961] Model parameter optimization (eps = 3.000000)
[00:14:46 -126067.343158] FAST spr round 1 (radius: 25)
[00:17:27 -112773.193052] FAST spr round 2 (radius: 25)
[00:19:28 -112138.560642] FAST spr round 3 (radius: 25)
[00:21:15 -112105.545265] FAST spr round 4 (radius: 25)
[00:22:40 -112105.163725] FAST spr round 5 (radius: 25)
[00:24:02 -112105.161816] Model parameter optimization (eps = 1.000000)
[00:24:21 -112088.034894] SLOW spr round 1 (radius: 5)
[00:26:37 -112038.605577] SLOW spr round 2 (radius: 5)
[00:28:43 -112025.802584] SLOW spr round 3 (radius: 5)
[00:30:43 -112024.840857] SLOW spr round 4 (radius: 5)
[00:32:37 -112024.840639] SLOW spr round 5 (radius: 10)
[00:34:40 -112024.840633] SLOW spr round 6 (radius: 15)
[00:38:13 -112020.748659] SLOW spr round 7 (radius: 5)
[00:40:54 -112019.821792] SLOW spr round 8 (radius: 5)
[00:43:10 -112019.821686] SLOW spr round 9 (radius: 10)
[00:45:16 -112019.821681] SLOW spr round 10 (radius: 15)
[00:48:37 -112019.821681] SLOW spr round 11 (radius: 20)
[00:48:55] [worker #4] ML tree search #5, logLikelihood: -112027.103188
[00:49:04] [worker #5] ML tree search #6, logLikelihood: -112009.392045
[00:50:47] [worker #2] ML tree search #3, logLikelihood: -112010.459591
[00:53:53 -112019.821681] SLOW spr round 12 (radius: 25)
[00:54:59] [worker #3] ML tree search #4, logLikelihood: -112007.935390
[00:55:27] [worker #1] ML tree search #2, logLikelihood: -112016.373679
[01:00:14 -112019.821681] Model parameter optimization (eps = 0.100000)

[01:00:23] [worker #0] ML tree search #1, logLikelihood: -112019.549190

[01:00:23 -343926.249874] Initial branch length optimization
[01:00:28 -294071.861842] Model parameter optimization (eps = 10.000000)
[01:01:02 -293029.538031] AUTODETECT spr round 1 (radius: 5)
[01:02:56 -206324.938668] AUTODETECT spr round 2 (radius: 10)
[01:05:01 -161855.099021] AUTODETECT spr round 3 (radius: 15)
[01:07:23 -141055.692950] AUTODETECT spr round 4 (radius: 20)
[01:10:19 -130743.435259] AUTODETECT spr round 5 (radius: 25)
[01:13:27 -127544.786452] SPR radius for FAST iterations: 25 (autodetect)
[01:13:27 -127544.786452] Model parameter optimization (eps = 3.000000)
[01:13:48 -127487.140448] FAST spr round 1 (radius: 25)
[01:16:23 -112835.580684] FAST spr round 2 (radius: 25)
[01:18:22 -112174.317306] FAST spr round 3 (radius: 25)
[01:20:05 -112107.002362] FAST spr round 4 (radius: 25)
[01:21:33 -112098.868478] FAST spr round 5 (radius: 25)
[01:22:55 -112098.868238] Model parameter optimization (eps = 1.000000)
[01:23:14 -112089.549884] SLOW spr round 1 (radius: 5)
[01:25:32 -112039.543458] SLOW spr round 2 (radius: 5)
[01:27:42 -112018.271218] SLOW spr round 3 (radius: 5)
[01:29:38 -112016.800453] SLOW spr round 4 (radius: 5)
[01:31:33 -112014.147369] SLOW spr round 5 (radius: 5)
[01:33:26 -112014.146934] SLOW spr round 6 (radius: 10)
[01:35:28 -112013.284220] SLOW spr round 7 (radius: 5)
[01:36:16] [worker #5] ML tree search #12, logLikelihood: -112028.638231
[01:38:04 -112012.084282] SLOW spr round 8 (radius: 5)
[01:39:17] [worker #4] ML tree search #11, logLikelihood: -112031.296514
[01:40:16 -112012.083927] SLOW spr round 9 (radius: 10)
[01:42:22 -112012.083910] SLOW spr round 10 (radius: 15)
[01:45:17] [worker #2] ML tree search #9, logLikelihood: -112043.116328
[01:45:43 -112012.083909] SLOW spr round 11 (radius: 20)
[01:50:03] [worker #1] ML tree search #8, logLikelihood: -112029.659626
[01:50:40] [worker #3] ML tree search #10, logLikelihood: -112031.648989
[01:50:42 -112012.083909] SLOW spr round 12 (radius: 25)
[01:56:42 -112012.083909] Model parameter optimization (eps = 0.100000)

[01:56:50] [worker #0] ML tree search #7, logLikelihood: -112011.955757

[01:56:50 -343293.264046] Initial branch length optimization
[01:56:54 -293257.680556] Model parameter optimization (eps = 10.000000)
[01:57:31 -292140.358098] AUTODETECT spr round 1 (radius: 5)
[01:59:28 -206934.591806] AUTODETECT spr round 2 (radius: 10)
[02:01:35 -151685.918097] AUTODETECT spr round 3 (radius: 15)
[02:04:11 -127669.269835] AUTODETECT spr round 4 (radius: 20)
[02:07:03 -125391.980206] AUTODETECT spr round 5 (radius: 25)
[02:10:35 -125391.912479] SPR radius for FAST iterations: 20 (autodetect)
[02:10:35 -125391.912479] Model parameter optimization (eps = 3.000000)
[02:10:56 -125333.664806] FAST spr round 1 (radius: 20)
[02:13:21 -112518.625252] FAST spr round 2 (radius: 20)
[02:15:13 -112152.399922] FAST spr round 3 (radius: 20)
[02:16:58 -112089.273760] FAST spr round 4 (radius: 20)
[02:18:23 -112078.598165] FAST spr round 5 (radius: 20)
[02:19:44 -112078.596883] Model parameter optimization (eps = 1.000000)
[02:19:58 -112075.824871] SLOW spr round 1 (radius: 5)
[02:22:11 -112052.973732] SLOW spr round 2 (radius: 5)
[02:24:19 -112042.919379] SLOW spr round 3 (radius: 5)
[02:26:17 -112042.014484] SLOW spr round 4 (radius: 5)
[02:28:11 -112042.014301] SLOW spr round 5 (radius: 10)
[02:30:10 -112040.680590] SLOW spr round 6 (radius: 5)
[02:30:17] [worker #5] ML tree search #18, logLikelihood: -112016.511909
[02:32:43 -112038.324921] SLOW spr round 7 (radius: 5)
[02:34:54 -112038.324905] SLOW spr round 8 (radius: 10)
[02:35:23] [worker #4] ML tree search #17, logLikelihood: -112011.803106
[02:36:56 -112038.324904] SLOW spr round 9 (radius: 15)
[02:40:07] [worker #1] ML tree search #14, logLikelihood: -112012.757589
[02:40:21 -112037.683986] SLOW spr round 10 (radius: 5)
[02:43:01 -112037.683304] SLOW spr round 11 (radius: 10)
[02:45:22 -112037.683287] SLOW spr round 12 (radius: 15)
[02:48:37 -112037.683286] SLOW spr round 13 (radius: 20)
[02:49:27] [worker #3] ML tree search #16, logLikelihood: -112033.329350
[02:50:53] [worker #2] ML tree search #15, logLikelihood: -112036.231797
[02:53:43 -112037.683286] SLOW spr round 14 (radius: 25)
[02:59:42 -112037.683286] Model parameter optimization (eps = 0.100000)

[02:59:47] [worker #0] ML tree search #13, logLikelihood: -112037.643164

[02:59:48 -340591.671448] Initial branch length optimization
[02:59:52 -291298.074197] Model parameter optimization (eps = 10.000000)
[03:00:28 -290128.576609] AUTODETECT spr round 1 (radius: 5)
[03:02:25 -212007.506032] AUTODETECT spr round 2 (radius: 10)
[03:04:31 -157109.051000] AUTODETECT spr round 3 (radius: 15)
[03:07:00 -139526.797344] AUTODETECT spr round 4 (radius: 20)
[03:09:54 -128811.910278] AUTODETECT spr round 5 (radius: 25)
[03:13:01 -128021.987116] SPR radius for FAST iterations: 25 (autodetect)
[03:13:01 -128021.987116] Model parameter optimization (eps = 3.000000)
[03:13:21 -127965.132272] FAST spr round 1 (radius: 25)
[03:15:49 -112562.617003] FAST spr round 2 (radius: 25)
[03:17:41 -112163.841392] FAST spr round 3 (radius: 25)
[03:19:20 -112112.644290] FAST spr round 4 (radius: 25)
[03:20:48 -112089.434019] FAST spr round 5 (radius: 25)
[03:22:10 -112083.036106] FAST spr round 6 (radius: 25)
[03:23:29 -112083.036103] Model parameter optimization (eps = 1.000000)
[03:23:44 -112075.968023] SLOW spr round 1 (radius: 5)
[03:25:53 -112042.163937] SLOW spr round 2 (radius: 5)
[03:27:51 -112040.631174] SLOW spr round 3 (radius: 5)
[03:29:45 -112040.312566] SLOW spr round 4 (radius: 5)
[03:29:54] [worker #1] ML tree search #20, logLikelihood: -112041.262616
[03:31:38 -112040.312549] SLOW spr round 5 (radius: 10)
[03:33:39 -112038.147673] SLOW spr round 6 (radius: 5)
[03:36:16 -112034.578137] SLOW spr round 7 (radius: 5)
[03:38:31 -112031.185131] SLOW spr round 8 (radius: 5)
[03:40:32 -112031.184579] SLOW spr round 9 (radius: 10)
[03:42:35 -112031.184542] SLOW spr round 10 (radius: 15)
[03:45:54 -112031.184539] SLOW spr round 11 (radius: 20)
[03:50:43 -112031.184538] SLOW spr round 12 (radius: 25)
[03:56:25 -112031.184538] Model parameter optimization (eps = 0.100000)

[03:56:45] [worker #0] ML tree search #19, logLikelihood: -112028.566300


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.156623,0.476766) (0.228973,0.562239) (0.349919,0.874821) (0.264485,1.854445) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -112007.935390

AIC score: 226801.870780 / AICc score: 4110485.870780 / BIC score: 231840.032919
Free parameters (model + branch lengths): 1393

WARNING: Number of free parameters (K=1393) is larger than alignment size (n=275).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q330K2/3_mltree/Q330K2.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q330K2/3_mltree/Q330K2.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q330K2/3_mltree/Q330K2.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q330K2/3_mltree/Q330K2.raxml.log

Analysis started: 03-Jul-2021 02:11:01 / finished: 03-Jul-2021 06:07:46

Elapsed time: 14205.190 seconds

Consumed energy: 1198.991 Wh (= 6 km in an electric car, or 30 km with an e-scooter!)