RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 19-Jul-2021 23:18:32 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q32MH5/2_msa/Q32MH5_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q32MH5/3_mltree/Q32MH5 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q32MH5/2_msa/Q32MH5_trimmed_msa.fasta
[00:00:00] Loaded alignment with 560 taxa and 344 sites

WARNING: Sequences tr_J3K917_J3K917_COCIM_246410 and tr_A0A0J6YB46_A0A0J6YB46_COCIT_404692 are exactly identical!
WARNING: Sequences tr_G3QL21_G3QL21_GORGO_9595 and sp_Q7L5A3_F214B_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_I6L5C6_I6L5C6_PONAB_9601 and sp_Q5RBA3_F214B_PONAB_9601 are exactly identical!
WARNING: Sequences tr_Q291I2_Q291I2_DROPS_46245 and tr_B4GAP2_B4GAP2_DROPE_7234 are exactly identical!
WARNING: Sequences tr_A0A179UAZ4_A0A179UAZ4_BLAGS_559298 and tr_C5GIG2_C5GIG2_AJEDR_559297 are exactly identical!
WARNING: Sequences tr_A0A2I3RMW2_A0A2I3RMW2_PANTR_9598 and tr_A0A2R9BIM4_A0A2R9BIM4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2QX80_H2QX80_PANTR_9598 and tr_A0A2R9AZQ6_A0A2R9AZQ6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F9FFL5_F9FFL5_FUSOF_660025 and tr_A0A2H3TSM4_A0A2H3TSM4_FUSOX_5507 are exactly identical!
WARNING: Sequences tr_F9FFL5_F9FFL5_FUSOF_660025 and tr_A0A2H3HNU2_A0A2H3HNU2_FUSOX_327505 are exactly identical!
WARNING: Sequences tr_E9F2F0_E9F2F0_METRA_655844 and tr_A0A0D9P2H0_A0A0D9P2H0_METAN_1291518 are exactly identical!
WARNING: Sequences tr_A0A1D5Q6B7_A0A1D5Q6B7_MACMU_9544 and tr_G7PBI3_G7PBI3_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A1D5Q6B7_A0A1D5Q6B7_MACMU_9544 and tr_A0A096NM50_A0A096NM50_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A1D5Q6B7_A0A1D5Q6B7_MACMU_9544 and tr_A0A2K6D1H8_A0A2K6D1H8_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A1D5Q6B7_A0A1D5Q6B7_MACMU_9544 and tr_A0A2K5ZJG7_A0A2K5ZJG7_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F7H2R0_F7H2R0_MACMU_9544 and tr_A0A2K6DWY9_A0A2K6DWY9_MACNE_9545 are exactly identical!
WARNING: Sequences tr_I1QLH1_I1QLH1_ORYGL_4538 and tr_A0A0D3H2L4_A0A0D3H2L4_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_I1QLH1_I1QLH1_ORYGL_4538 and tr_A0A0P0XIG8_A0A0P0XIG8_ORYSJ_39947 are exactly identical!
WARNING: Sequences tr_S0DN60_S0DN60_GIBF5_1279085 and tr_A0A365N9D3_A0A365N9D3_GIBIN_948311 are exactly identical!
WARNING: Sequences tr_A0A015KA59_A0A015KA59_9GLOM_1432141 and tr_A0A2I1FVE2_A0A2I1FVE2_9GLOM_588596 are exactly identical!
WARNING: Sequences tr_A0A1S4DEL1_A0A1S4DEL1_TOBAC_4097 and tr_A0A1U7VP35_A0A1U7VP35_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A2U3ZEN6_A0A2U3ZEN6_ODORO_9708 and tr_A0A2U3Y683_A0A2U3Y683_LEPWE_9713 are exactly identical!
WARNING: Duplicate sequences found: 21

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q32MH5/3_mltree/Q32MH5.raxml.reduced.phy

Alignment comprises 1 partitions and 344 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 344 / 344
Gaps: 16.09 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q32MH5/3_mltree/Q32MH5.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 560 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 344 / 27520
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -324216.302328] Initial branch length optimization
[00:00:06 -268996.207092] Model parameter optimization (eps = 10.000000)
[00:00:46 -268499.401553] AUTODETECT spr round 1 (radius: 5)
[00:02:23 -183221.361815] AUTODETECT spr round 2 (radius: 10)
[00:04:09 -137462.596567] AUTODETECT spr round 3 (radius: 15)
[00:06:16 -120620.786983] AUTODETECT spr round 4 (radius: 20)
[00:08:53 -108299.276550] AUTODETECT spr round 5 (radius: 25)
[00:11:54 -105832.703565] SPR radius for FAST iterations: 25 (autodetect)
[00:11:54 -105832.703565] Model parameter optimization (eps = 3.000000)
[00:12:29 -105647.249961] FAST spr round 1 (radius: 25)
[00:14:30 -93207.076499] FAST spr round 2 (radius: 25)
[00:16:00 -92780.614205] FAST spr round 3 (radius: 25)
[00:17:13 -92769.001491] FAST spr round 4 (radius: 25)
[00:18:20 -92765.046467] FAST spr round 5 (radius: 25)
[00:19:24 -92765.045935] Model parameter optimization (eps = 1.000000)
[00:19:36 -92762.943309] SLOW spr round 1 (radius: 5)
[00:21:24 -92731.108143] SLOW spr round 2 (radius: 5)
[00:23:15 -92725.087715] SLOW spr round 3 (radius: 5)
[00:24:59 -92721.410104] SLOW spr round 4 (radius: 5)
[00:26:40 -92720.149730] SLOW spr round 5 (radius: 5)
[00:28:20 -92720.149585] SLOW spr round 6 (radius: 10)
[00:30:02 -92718.792608] SLOW spr round 7 (radius: 5)
[00:32:18 -92718.642442] SLOW spr round 8 (radius: 5)
[00:34:13 -92718.642392] SLOW spr round 9 (radius: 10)
[00:36:01 -92718.642345] SLOW spr round 10 (radius: 15)
[00:38:58 -92718.642298] SLOW spr round 11 (radius: 20)
[00:42:52 -92718.642251] SLOW spr round 12 (radius: 25)
[00:47:23] [worker #1] ML tree search #2, logLikelihood: -92735.325134
[00:48:06 -92718.642204] Model parameter optimization (eps = 0.100000)

[00:48:15] [worker #0] ML tree search #1, logLikelihood: -92718.467789

[00:48:15 -317358.070475] Initial branch length optimization
[00:48:20 -265094.647490] Model parameter optimization (eps = 10.000000)
[00:48:55 -264680.367740] AUTODETECT spr round 1 (radius: 5)
[00:50:29 -179881.352748] AUTODETECT spr round 2 (radius: 10)
[00:52:21 -136404.991108] AUTODETECT spr round 3 (radius: 15)
[00:52:52] [worker #4] ML tree search #5, logLikelihood: -92719.720897
[00:54:26] [worker #3] ML tree search #4, logLikelihood: -92712.239849
[00:54:33 -109838.406672] AUTODETECT spr round 4 (radius: 20)
[00:57:07 -105711.341939] AUTODETECT spr round 5 (radius: 25)
[00:58:45] [worker #2] ML tree search #3, logLikelihood: -92731.252774
[01:00:14 -105046.840738] SPR radius for FAST iterations: 25 (autodetect)
[01:00:14 -105046.840738] Model parameter optimization (eps = 3.000000)
[01:00:43 -104901.874462] FAST spr round 1 (radius: 25)
[01:02:45 -93078.998725] FAST spr round 2 (radius: 25)
[01:04:18 -92771.675043] FAST spr round 3 (radius: 25)
[01:05:35 -92755.869492] FAST spr round 4 (radius: 25)
[01:06:43 -92752.617295] FAST spr round 5 (radius: 25)
[01:07:48 -92752.617270] Model parameter optimization (eps = 1.000000)
[01:08:04 -92738.961517] SLOW spr round 1 (radius: 5)
[01:09:55 -92722.068700] SLOW spr round 2 (radius: 5)
[01:11:40 -92722.068432] SLOW spr round 3 (radius: 10)
[01:13:26 -92717.804939] SLOW spr round 4 (radius: 5)
[01:15:45 -92716.543249] SLOW spr round 5 (radius: 5)
[01:17:42 -92716.543122] SLOW spr round 6 (radius: 10)
[01:19:32 -92716.543096] SLOW spr round 7 (radius: 15)
[01:22:31 -92716.543072] SLOW spr round 8 (radius: 20)
[01:26:35 -92716.543047] SLOW spr round 9 (radius: 25)
[01:31:59 -92716.543023] Model parameter optimization (eps = 0.100000)

[01:32:11] [worker #0] ML tree search #6, logLikelihood: -92715.996845

[01:32:11 -319593.475189] Initial branch length optimization
[01:32:17 -266560.428075] Model parameter optimization (eps = 10.000000)
[01:32:27] [worker #1] ML tree search #7, logLikelihood: -92726.202056
[01:32:54 -266188.884550] AUTODETECT spr round 1 (radius: 5)
[01:34:29 -179228.819315] AUTODETECT spr round 2 (radius: 10)
[01:36:18 -137349.459948] AUTODETECT spr round 3 (radius: 15)
[01:36:40] [worker #3] ML tree search #9, logLikelihood: -92731.063665
[01:37:20] [worker #4] ML tree search #10, logLikelihood: -92722.618875
[01:38:27 -116213.957430] AUTODETECT spr round 4 (radius: 20)
[01:40:53 -108774.341741] AUTODETECT spr round 5 (radius: 25)
[01:43:40 -107756.728579] SPR radius for FAST iterations: 25 (autodetect)
[01:43:40 -107756.728579] Model parameter optimization (eps = 3.000000)
[01:44:05 -107562.339182] FAST spr round 1 (radius: 25)
[01:46:07 -93335.260304] FAST spr round 2 (radius: 25)
[01:47:34 -92807.453529] FAST spr round 3 (radius: 25)
[01:47:46] [worker #2] ML tree search #8, logLikelihood: -92717.709702
[01:48:52 -92772.338890] FAST spr round 4 (radius: 25)
[01:50:03 -92753.938326] FAST spr round 5 (radius: 25)
[01:51:09 -92746.831846] FAST spr round 6 (radius: 25)
[01:52:19 -92741.849102] FAST spr round 7 (radius: 25)
[01:53:22 -92741.849043] Model parameter optimization (eps = 1.000000)
[01:53:33 -92741.162854] SLOW spr round 1 (radius: 5)
[01:55:23 -92721.405292] SLOW spr round 2 (radius: 5)
[01:57:11 -92720.685882] SLOW spr round 3 (radius: 5)
[01:58:51 -92720.685621] SLOW spr round 4 (radius: 10)
[02:00:37 -92719.877742] SLOW spr round 5 (radius: 5)
[02:02:54 -92719.770720] SLOW spr round 6 (radius: 5)
[02:04:50 -92719.770670] SLOW spr round 7 (radius: 10)
[02:06:43 -92719.218770] SLOW spr round 8 (radius: 5)
[02:08:58 -92718.620409] SLOW spr round 9 (radius: 5)
[02:10:55 -92718.505101] SLOW spr round 10 (radius: 5)
[02:12:42 -92717.902010] SLOW spr round 11 (radius: 5)
[02:13:35] [worker #1] ML tree search #12, logLikelihood: -92740.385176
[02:14:25 -92717.901973] SLOW spr round 12 (radius: 10)
[02:16:11 -92717.901972] SLOW spr round 13 (radius: 15)
[02:19:22 -92717.901972] SLOW spr round 14 (radius: 20)
[02:23:32 -92717.901972] SLOW spr round 15 (radius: 25)
[02:29:19 -92717.901972] Model parameter optimization (eps = 0.100000)

[02:29:30] [worker #0] ML tree search #11, logLikelihood: -92717.775643

[02:29:30 -319814.641075] Initial branch length optimization
[02:29:36 -267802.658966] Model parameter optimization (eps = 10.000000)
[02:30:11 -267440.595294] AUTODETECT spr round 1 (radius: 5)
[02:30:42] [worker #3] ML tree search #14, logLikelihood: -92726.311559
[02:31:47 -181485.845611] AUTODETECT spr round 2 (radius: 10)
[02:33:35 -134110.039977] AUTODETECT spr round 3 (radius: 15)
[02:35:40 -118518.297370] AUTODETECT spr round 4 (radius: 20)
[02:38:32 -108802.478625] AUTODETECT spr round 5 (radius: 25)
[02:40:35] [worker #2] ML tree search #13, logLikelihood: -92730.251860
[02:42:35 -108284.220300] SPR radius for FAST iterations: 25 (autodetect)
[02:42:35 -108284.220300] Model parameter optimization (eps = 3.000000)
[02:42:58 -108107.390403] FAST spr round 1 (radius: 25)
[02:45:01 -93940.171723] FAST spr round 2 (radius: 25)
[02:46:35 -92801.756398] FAST spr round 3 (radius: 25)
[02:46:50] [worker #4] ML tree search #15, logLikelihood: -92722.724445
[02:48:02 -92757.051978] FAST spr round 4 (radius: 25)
[02:49:10 -92755.190142] FAST spr round 5 (radius: 25)
[02:50:16 -92753.788370] FAST spr round 6 (radius: 25)
[02:51:19 -92753.785766] Model parameter optimization (eps = 1.000000)
[02:51:27 -92752.988528] SLOW spr round 1 (radius: 5)
[02:53:20 -92727.568119] SLOW spr round 2 (radius: 5)
[02:55:03 -92726.699810] SLOW spr round 3 (radius: 5)
[02:55:17] [worker #1] ML tree search #17, logLikelihood: -92731.048756
[02:56:45 -92726.320315] SLOW spr round 4 (radius: 5)
[02:58:25 -92726.320299] SLOW spr round 5 (radius: 10)
[03:00:09 -92726.320298] SLOW spr round 6 (radius: 15)
[03:03:19 -92726.320298] SLOW spr round 7 (radius: 20)
[03:07:28 -92726.320298] SLOW spr round 8 (radius: 25)
[03:13:13 -92726.320298] Model parameter optimization (eps = 0.100000)

[03:13:27] [worker #0] ML tree search #16, logLikelihood: -92725.795756

[03:15:46] [worker #3] ML tree search #19, logLikelihood: -92721.908760
[03:27:31] [worker #2] ML tree search #18, logLikelihood: -92716.311598
[03:31:30] [worker #4] ML tree search #20, logLikelihood: -92723.267148

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.195774,0.395398) (0.117697,0.465509) (0.292712,0.798876) (0.393818,1.609786) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -92712.239849

AIC score: 187670.479697 / AICc score: 2712174.479697 / BIC score: 191983.520278
Free parameters (model + branch lengths): 1123

WARNING: Number of free parameters (K=1123) is larger than alignment size (n=344).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q32MH5/3_mltree/Q32MH5.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q32MH5/3_mltree/Q32MH5.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q32MH5/3_mltree/Q32MH5.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/Q32MH5/3_mltree/Q32MH5.raxml.log

Analysis started: 19-Jul-2021 23:18:32 / finished: 20-Jul-2021 02:50:03

Elapsed time: 12690.893 seconds