RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 05-Jul-2021 22:24:02 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q2KJY2/2_msa/Q2KJY2_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q2KJY2/3_mltree/Q2KJY2 --seed 2 --threads 5 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q2KJY2/2_msa/Q2KJY2_trimmed_msa.fasta [00:00:00] Loaded alignment with 987 taxa and 358 sites WARNING: Sequences tr_B4QRJ6_B4QRJ6_DROSI_7240 and tr_Q9VRK9_Q9VRK9_DROME_7227 are exactly identical! WARNING: Sequences tr_F1NIP3_F1NIP3_CHICK_9031 and tr_G1NA87_G1NA87_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NIP3_F1NIP3_CHICK_9031 and tr_U3IW15_U3IW15_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NIP3_F1NIP3_CHICK_9031 and tr_A0A091IP41_A0A091IP41_EGRGA_188379 are exactly identical! WARNING: Sequences tr_F1NIP3_F1NIP3_CHICK_9031 and tr_A0A087RF52_A0A087RF52_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1NIP3_F1NIP3_CHICK_9031 and tr_A0A093GVX0_A0A093GVX0_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1NIP3_F1NIP3_CHICK_9031 and tr_A0A091VYA0_A0A091VYA0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_F1NIP3_F1NIP3_CHICK_9031 and tr_A0A0A0A1U0_A0A0A0A1U0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_F1NIP3_F1NIP3_CHICK_9031 and tr_A0A2I0LT71_A0A2I0LT71_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1NIP3_F1NIP3_CHICK_9031 and tr_A0A093GCJ8_A0A093GCJ8_DRYPU_118200 are exactly identical! WARNING: Sequences tr_F1NIP3_F1NIP3_CHICK_9031 and tr_A0A226MHI2_A0A226MHI2_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NIP3_F1NIP3_CHICK_9031 and tr_A0A226P9V5_A0A226P9V5_COLVI_9014 are exactly identical! WARNING: Sequences tr_Q5F423_Q5F423_CHICK_9031 and tr_G1N6G9_G1N6G9_MELGA_9103 are exactly identical! WARNING: Sequences tr_Q5F423_Q5F423_CHICK_9031 and tr_U3IAB0_U3IAB0_ANAPL_8839 are exactly identical! WARNING: Sequences tr_Q5F423_Q5F423_CHICK_9031 and tr_A0A091J8C0_A0A091J8C0_EGRGA_188379 are exactly identical! WARNING: Sequences tr_Q5F423_Q5F423_CHICK_9031 and tr_A0A091WS06_A0A091WS06_NIPNI_128390 are exactly identical! WARNING: Sequences tr_Q5F423_Q5F423_CHICK_9031 and tr_A0A087R2P0_A0A087R2P0_APTFO_9233 are exactly identical! WARNING: Sequences tr_Q5F423_Q5F423_CHICK_9031 and tr_A0A093J170_A0A093J170_STRCA_441894 are exactly identical! WARNING: Sequences tr_Q5F423_Q5F423_CHICK_9031 and tr_A0A091X975_A0A091X975_OPIHO_30419 are exactly identical! WARNING: Sequences tr_Q5F423_Q5F423_CHICK_9031 and tr_A0A0A0B3W6_A0A0A0B3W6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_Q5F423_Q5F423_CHICK_9031 and tr_A0A226NJV1_A0A226NJV1_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q5F423_Q5F423_CHICK_9031 and tr_A0A226PII5_A0A226PII5_COLVI_9014 are exactly identical! WARNING: Sequences tr_R4GFP1_R4GFP1_CHICK_9031 and tr_A0A226MF24_A0A226MF24_CALSU_9009 are exactly identical! WARNING: Sequences tr_R4GFP1_R4GFP1_CHICK_9031 and tr_A0A226PF49_A0A226PF49_COLVI_9014 are exactly identical! WARNING: Sequences sp_P28741_KIF3A_MOUSE_10090 and tr_F1LQZ3_F1LQZ3_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_A0A2I3HFJ1_A0A2I3HFJ1_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_G1PUY5_G1PUY5_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_F1PSQ4_F1PSQ4_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_F6SR05_F6SR05_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_W5PZN5_W5PZN5_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_I3MEY6_I3MEY6_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_F7BR30_F7BR30_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_F7EXN8_F7EXN8_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_F1RJV1_F1RJV1_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_G1MHB0_G1MHB0_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_G7P888_G7P888_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_E1B999_E1B999_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_L5JUX6_L5JUX6_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_A0A2I2U4Q8_A0A2I2U4Q8_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_A0A0D9RMN6_A0A0D9RMN6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_A0A1S2ZIQ7_A0A1S2ZIQ7_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_A0A2K6BIR9_A0A2K6BIR9_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_A0A2U3WHS7_A0A2U3WHS7_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_A0A2U3XTG2_A0A2U3XTG2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_A0A2Y9RJZ0_A0A2Y9RJZ0_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_A0A2Y9IKY8_A0A2Y9IKY8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YGG2_M3YGG2_MUSPF_9669 and tr_A0A2Y9PF20_A0A2Y9PF20_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Z2F0_M3Z2F0_MUSPF_9669 and tr_E2QUS2_E2QUS2_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z2F0_M3Z2F0_MUSPF_9669 and tr_F7CYC1_F7CYC1_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3Z2F0_M3Z2F0_MUSPF_9669 and tr_I3MN46_I3MN46_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3Z2F0_M3Z2F0_MUSPF_9669 and tr_H0WS85_H0WS85_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3Z2F0_M3Z2F0_MUSPF_9669 and tr_F1S519_F1S519_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Z2F0_M3Z2F0_MUSPF_9669 and tr_G1M429_G1M429_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Z2F0_M3Z2F0_MUSPF_9669 and tr_M3X169_M3X169_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Z2F0_M3Z2F0_MUSPF_9669 and tr_A0A1S2ZPY9_A0A1S2ZPY9_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3Z2F0_M3Z2F0_MUSPF_9669 and tr_A0A1U7QU83_A0A1U7QU83_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3Z2F0_M3Z2F0_MUSPF_9669 and tr_A0A2U3VEH3_A0A2U3VEH3_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z2F0_M3Z2F0_MUSPF_9669 and tr_A0A2U3YBQ2_A0A2U3YBQ2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Z2F0_M3Z2F0_MUSPF_9669 and tr_A0A2Y9IP43_A0A2Y9IP43_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z2F0_M3Z2F0_MUSPF_9669 and tr_A0A2Y9PT69_A0A2Y9PT69_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Z2F0_M3Z2F0_MUSPF_9669 and tr_A0A2Y9FGM5_A0A2Y9FGM5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3Z2F0_M3Z2F0_MUSPF_9669 and tr_A0A384D2Z6_A0A384D2Z6_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Z2F0_M3Z2F0_MUSPF_9669 and tr_A0A384B241_A0A384B241_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1RFC6_G1RFC6_NOMLE_61853 and tr_G3RAF7_G3RAF7_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RFC6_G1RFC6_NOMLE_61853 and tr_H2QK62_H2QK62_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RFC6_G1RFC6_NOMLE_61853 and sp_O15066_KIF3B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RFC6_G1RFC6_NOMLE_61853 and tr_F6S877_F6S877_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RFC6_G1RFC6_NOMLE_61853 and tr_G7PGM8_G7PGM8_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RFC6_G1RFC6_NOMLE_61853 and tr_A0A096NUY3_A0A096NUY3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RFC6_G1RFC6_NOMLE_61853 and tr_A0A2K5L083_A0A2K5L083_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RFC6_G1RFC6_NOMLE_61853 and tr_A0A2K6D218_A0A2K6D218_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RFC6_G1RFC6_NOMLE_61853 and tr_A0A2R9BB24_A0A2R9BB24_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1NUN0_G1NUN0_MYOLU_59463 and tr_A0A1U7T1A1_A0A1U7T1A1_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G3QY97_G3QY97_GORGO_9595 and sp_Q5R4H3_KIF3A_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QY97_G3QY97_GORGO_9595 and tr_A0A2I3RF17_A0A2I3RF17_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QY97_G3QY97_GORGO_9595 and sp_Q9Y496_KIF3A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QY97_G3QY97_GORGO_9595 and tr_A0A2R9BCA2_A0A2R9BCA2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1U854_G1U854_RABIT_9986 and tr_H0VIR4_H0VIR4_CAVPO_10141 are exactly identical! WARNING: Sequences tr_H2R7Y5_H2R7Y5_PANTR_9598 and tr_A0A2R9BC10_A0A2R9BC10_PANPA_9597 are exactly identical! WARNING: Sequences tr_W5NZV7_W5NZV7_SHEEP_9940 and tr_F1N020_F1N020_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A158NZT6_A0A158NZT6_ATTCE_12957 and tr_A0A195BMG4_A0A195BMG4_9HYME_520822 are exactly identical! WARNING: Sequences tr_H0XDE4_H0XDE4_OTOGA_30611 and tr_A0A3Q0DT28_A0A3Q0DT28_TARSY_1868482 are exactly identical! WARNING: Sequences tr_H0XDE4_H0XDE4_OTOGA_30611 and tr_A0A384C5Y5_A0A384C5Y5_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A1D5QF70_A0A1D5QF70_MACMU_9544 and tr_A0A096MRZ2_A0A096MRZ2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5QF70_A0A1D5QF70_MACMU_9544 and tr_A0A0D9R9V8_A0A0D9R9V8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5QF70_A0A1D5QF70_MACMU_9544 and tr_A0A2K5YQV5_A0A2K5YQV5_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6YUV1_F6YUV1_MACMU_9544 and tr_A0A0D9RBJ8_A0A0D9RBJ8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6YUV1_F6YUV1_MACMU_9544 and tr_A0A2K6CXD8_A0A2K6CXD8_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7ES46_F7ES46_MACMU_9544 and tr_A0A096MZW0_A0A096MZW0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7ES46_F7ES46_MACMU_9544 and tr_A0A0D9S8C0_A0A0D9S8C0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7ES46_F7ES46_MACMU_9544 and tr_A0A2K6BA34_A0A2K6BA34_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7XM93_G7XM93_ASPKW_1033177 and tr_A0A100IPV7_A0A100IPV7_ASPNG_5061 are exactly identical! WARNING: Sequences tr_G7XM93_G7XM93_ASPKW_1033177 and tr_A0A146FAM8_A0A146FAM8_9EURO_1069201 are exactly identical! WARNING: Sequences tr_G7XM93_G7XM93_ASPKW_1033177 and tr_A0A1L9NQF7_A0A1L9NQF7_ASPTU_767770 are exactly identical! WARNING: Sequences tr_G7XM93_G7XM93_ASPKW_1033177 and tr_A0A317UWU6_A0A317UWU6_9EURO_1448314 are exactly identical! WARNING: Sequences tr_E5S1E3_E5S1E3_TRISP_6334 and tr_A0A0V1CHN2_A0A0V1CHN2_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5S1E3_E5S1E3_TRISP_6334 and tr_A0A0V0X9T9_A0A0V0X9T9_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5S1E3_E5S1E3_TRISP_6334 and tr_A0A0V1KUC4_A0A0V1KUC4_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5S1E3_E5S1E3_TRISP_6334 and tr_A0A0V1P260_A0A0V1P260_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5S1E3_E5S1E3_TRISP_6334 and tr_A0A0V0TJ09_A0A0V0TJ09_9BILA_144512 are exactly identical! WARNING: Sequences tr_A2WSD1_A2WSD1_ORYSI_39946 and tr_A0A0D9YBG4_A0A0D9YBG4_9ORYZ_40148 are exactly identical! WARNING: Sequences sp_Q9GYZ0_KIF15_STRPU_7668 and tr_W4YZN7_W4YZN7_STRPU_7668 are exactly identical! WARNING: Sequences tr_I1NPG8_I1NPG8_ORYGL_4538 and tr_A0A0D3ER10_A0A0D3ER10_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_G3T0G8_G3T0G8_LOXAF_9785 and tr_A0A2Y9QI24_A0A2Y9QI24_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G3T4C1_G3T4C1_LOXAF_9785 and tr_A0A2Y9EQJ6_A0A2Y9EQJ6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G3T4C1_G3T4C1_LOXAF_9785 and tr_A0A384AMM3_A0A384AMM3_BALAS_310752 are exactly identical! WARNING: Sequences tr_H0YT24_H0YT24_TAEGU_59729 and tr_A0A091EC39_A0A091EC39_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0YT24_H0YT24_TAEGU_59729 and tr_A0A093SAU9_A0A093SAU9_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0YT24_H0YT24_TAEGU_59729 and tr_A0A218V2Z9_A0A218V2Z9_9PASE_299123 are exactly identical! WARNING: Sequences tr_G0MP98_G0MP98_CAEBE_135651 and tr_G0MPA0_G0MPA0_CAEBE_135651 are exactly identical! WARNING: Sequences tr_B3SAV1_B3SAV1_TRIAD_10228 and tr_A0A369S885_A0A369S885_9METZ_287889 are exactly identical! WARNING: Sequences tr_U3JJV1_U3JJV1_FICAL_59894 and tr_A0A218UR71_A0A218UR71_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3JS97_U3JS97_FICAL_59894 and tr_A0A218UT41_A0A218UT41_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3IY78_U3IY78_ANAPL_8839 and tr_A0A091WM33_A0A091WM33_OPIHO_30419 are exactly identical! WARNING: Sequences tr_U3IY78_U3IY78_ANAPL_8839 and tr_A0A0A0B2X0_A0A0A0B2X0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_W2PPA8_W2PPA8_PHYPN_761204 and tr_A0A0W8D6C7_A0A0W8D6C7_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2PPA8_W2PPA8_PHYPN_761204 and tr_W2KCI8_W2KCI8_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W2PZR3_W2PZR3_PHYPN_761204 and tr_A0A0W8DX40_A0A0W8DX40_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2PZR3_W2PZR3_PHYPN_761204 and tr_W2KWP2_W2KWP2_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W2Q0C1_W2Q0C1_PHYPN_761204 and tr_A0A0W8BPJ0_A0A0W8BPJ0_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2Q0C1_W2Q0C1_PHYPN_761204 and tr_A0A0W8DVX0_A0A0W8DVX0_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2QBR8_W2QBR8_PHYPN_761204 and tr_W2LCC9_W2LCC9_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A067FQ15_A0A067FQ15_CITSI_2711 and tr_V4TW75_V4TW75_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067FQ15_A0A067FQ15_CITSI_2711 and tr_A0A2H5Q7C1_A0A2H5Q7C1_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A067CMC3_A0A067CMC3_SAPPC_695850 and tr_T0PUW9_T0PUW9_9STRA_1156394 are exactly identical! WARNING: Sequences tr_A0A0K0FGM0_A0A0K0FGM0_STRVS_75913 and tr_A0A0N5CB28_A0A0N5CB28_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A151MH60_A0A151MH60_ALLMI_8496 and tr_A0A3Q0GRZ9_A0A3Q0GRZ9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A194RDQ9_A0A194RDQ9_PAPMA_76193 and tr_A0A194PV48_A0A194PV48_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A093PZ78_A0A093PZ78_9PASS_328815 and tr_A0A091V876_A0A091V876_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A093PZ78_A0A093PZ78_9PASS_328815 and tr_A0A0A0A8F0_A0A0A0A8F0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2I0LMX4_A0A2I0LMX4_COLLI_8932 and tr_A0A1V4KKQ3_A0A1V4KKQ3_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0MVM5_A0A2I0MVM5_COLLI_8932 and tr_A0A1V4JKT1_A0A1V4JKT1_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1DI03_A0A0V1DI03_TRIBR_45882 and tr_A0A0V0XAG9_A0A0V0XAG9_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1DI03_A0A0V1DI03_TRIBR_45882 and tr_A0A0V1L999_A0A0V1L999_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1DI03_A0A0V1DI03_TRIBR_45882 and tr_A0A0V1P7K1_A0A0V1P7K1_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1MT27_A0A0V1MT27_9BILA_268474 and tr_A0A0V1H0W5_A0A0V1H0W5_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A195E6E6_A0A195E6E6_9HYME_471704 and tr_A0A151IB55_A0A151IB55_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A1S4BDX3_A0A1S4BDX3_TOBAC_4097 and tr_A0A1U7VQJ6_A0A1U7VQJ6_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A226MLX6_A0A226MLX6_CALSU_9009 and tr_A0A226P0M9_A0A226P0M9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NH88_A0A226NH88_CALSU_9009 and tr_A0A226PLD1_A0A226PLD1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0PJ80_A0A2D0PJ80_ICTPU_7998 and tr_A0A2D0PKU9_A0A2D0PKU9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PJ80_A0A2D0PJ80_ICTPU_7998 and tr_A0A2D0PKW6_A0A2D0PKW6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PJ80_A0A2D0PJ80_ICTPU_7998 and tr_A0A2D0PMJ4_A0A2D0PMJ4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PJ80_A0A2D0PJ80_ICTPU_7998 and tr_A0A2D0PMJ7_A0A2D0PMJ7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PJ80_A0A2D0PJ80_ICTPU_7998 and tr_A0A2D0PNK2_A0A2D0PNK2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RPD0_A0A2D0RPD0_ICTPU_7998 and tr_A0A2D0RPD1_A0A2D0RPD1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RPD0_A0A2D0RPD0_ICTPU_7998 and tr_A0A2D0RQC0_A0A2D0RQC0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SK08_A0A2D0SK08_ICTPU_7998 and tr_A0A2D0SL80_A0A2D0SL80_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SK08_A0A2D0SK08_ICTPU_7998 and tr_W5UG62_W5UG62_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5MD51_A0A2K5MD51_CERAT_9531 and tr_A0A2K6A7N6_A0A2K6A7N6_MANLE_9568 are exactly identical! WARNING: Duplicate sequences found: 150 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q2KJY2/3_mltree/Q2KJY2.raxml.reduced.phy Alignment comprises 1 partitions and 358 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 358 / 358 Gaps: 4.63 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q2KJY2/3_mltree/Q2KJY2.raxml.rba Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 987 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 358 / 28640 [00:00:00] Data distribution: max. searches per worker: 4 Starting ML tree search with 20 distinct starting trees [00:00:00 -593778.456680] Initial branch length optimization [00:00:09 -478246.769184] Model parameter optimization (eps = 10.000000) [00:01:25 -477658.063520] AUTODETECT spr round 1 (radius: 5) [00:06:17 -304082.139719] AUTODETECT spr round 2 (radius: 10) [00:11:28 -216100.389470] AUTODETECT spr round 3 (radius: 15) [00:16:52 -162094.341088] AUTODETECT spr round 4 (radius: 20) [00:22:55 -146001.409263] AUTODETECT spr round 5 (radius: 25) [00:30:48 -139743.980684] SPR radius for FAST iterations: 25 (autodetect) [00:30:48 -139743.980684] Model parameter optimization (eps = 3.000000) [00:31:24 -139441.440911] FAST spr round 1 (radius: 25) [00:36:52 -118296.912018] FAST spr round 2 (radius: 25) [00:40:38 -116462.375525] FAST spr round 3 (radius: 25) [00:43:50 -116342.109777] FAST spr round 4 (radius: 25) [00:46:38 -116330.325205] FAST spr round 5 (radius: 25) [00:49:16 -116327.701958] FAST spr round 6 (radius: 25) [00:51:49 -116327.487532] FAST spr round 7 (radius: 25) [00:54:18 -116327.486900] Model parameter optimization (eps = 1.000000) [00:54:42 -116314.411462] SLOW spr round 1 (radius: 5) [00:58:07 -116299.728492] SLOW spr round 2 (radius: 5) [01:01:39 -116291.195988] SLOW spr round 3 (radius: 5) [01:05:05 -116288.309533] SLOW spr round 4 (radius: 5) [01:08:24 -116288.309144] SLOW spr round 5 (radius: 10) [01:11:59 -116287.760547] SLOW spr round 6 (radius: 5) [01:16:29 -116287.759411] SLOW spr round 7 (radius: 10) [01:20:35 -116287.759192] SLOW spr round 8 (radius: 15) [01:26:37 -116287.759150] SLOW spr round 9 (radius: 20) [01:35:38 -116287.759141] SLOW spr round 10 (radius: 25) [01:39:06] [worker #2] ML tree search #3, logLikelihood: -117268.849267 [01:47:22 -116287.759136] Model parameter optimization (eps = 0.100000) [01:47:37] [worker #0] ML tree search #1, logLikelihood: -116287.383923 [01:47:37 -587947.119368] Initial branch length optimization [01:47:47 -474630.218191] Model parameter optimization (eps = 10.000000) [01:49:01 -474091.534837] AUTODETECT spr round 1 (radius: 5) [01:53:42] [worker #1] ML tree search #2, logLikelihood: -116283.114415 [01:53:46 -308022.885935] AUTODETECT spr round 2 (radius: 10) [01:59:01 -220035.624460] AUTODETECT spr round 3 (radius: 15) [02:04:15 -176059.191087] AUTODETECT spr round 4 (radius: 20) [02:10:30 -143649.554249] AUTODETECT spr round 5 (radius: 25) [02:16:06] [worker #4] ML tree search #5, logLikelihood: -116282.216453 [02:17:48 -136432.192220] SPR radius for FAST iterations: 25 (autodetect) [02:17:48 -136432.192220] Model parameter optimization (eps = 3.000000) [02:18:24 -136212.249783] FAST spr round 1 (radius: 25) [02:23:35 -117209.247252] FAST spr round 2 (radius: 25) [02:27:19 -116374.509850] FAST spr round 3 (radius: 25) [02:27:20] [worker #3] ML tree search #4, logLikelihood: -116289.146134 [02:30:32 -116333.086837] FAST spr round 4 (radius: 25) [02:33:20 -116325.628998] FAST spr round 5 (radius: 25) [02:35:56 -116325.628906] Model parameter optimization (eps = 1.000000) [02:36:20 -116319.594273] SLOW spr round 1 (radius: 5) [02:39:49 -116295.630789] SLOW spr round 2 (radius: 5) [02:43:19 -116291.605105] SLOW spr round 3 (radius: 5) [02:46:40 -116290.838363] SLOW spr round 4 (radius: 5) [02:49:59 -116290.838248] SLOW spr round 5 (radius: 10) [02:53:39 -116288.495059] SLOW spr round 6 (radius: 5) [02:58:09 -116288.492498] SLOW spr round 7 (radius: 10) [03:02:18 -116288.492252] SLOW spr round 8 (radius: 15) [03:08:27 -116281.014639] SLOW spr round 9 (radius: 5) [03:13:24 -116279.028665] SLOW spr round 10 (radius: 5) [03:17:31 -116279.028399] SLOW spr round 11 (radius: 10) [03:18:45] [worker #2] ML tree search #8, logLikelihood: -116280.669476 [03:21:27 -116279.028384] SLOW spr round 12 (radius: 15) [03:27:35 -116279.028380] SLOW spr round 13 (radius: 20) [03:36:16 -116279.028378] SLOW spr round 14 (radius: 25) [03:47:43 -116279.028377] Model parameter optimization (eps = 0.100000) [03:47:58] [worker #0] ML tree search #6, logLikelihood: -116278.870130 [03:47:59 -588111.491709] Initial branch length optimization [03:48:08 -474309.176942] Model parameter optimization (eps = 10.000000) [03:49:23 -473812.137911] AUTODETECT spr round 1 (radius: 5) [03:54:11 -311549.665732] AUTODETECT spr round 2 (radius: 10) [03:59:25 -215185.513438] AUTODETECT spr round 3 (radius: 15) [03:59:59] [worker #4] ML tree search #10, logLikelihood: -116278.712716 [04:04:34 -173813.612956] AUTODETECT spr round 4 (radius: 20) [04:10:50 -148247.919323] AUTODETECT spr round 5 (radius: 25) [04:10:53] [worker #3] ML tree search #9, logLikelihood: -116284.332446 [04:18:22 -138492.990478] SPR radius for FAST iterations: 25 (autodetect) [04:18:22 -138492.990478] Model parameter optimization (eps = 3.000000) [04:19:04 -138239.704354] FAST spr round 1 (radius: 25) [04:24:17 -119029.786556] FAST spr round 2 (radius: 25) [04:27:39 -116599.435375] FAST spr round 3 (radius: 25) [04:30:56 -116331.226692] FAST spr round 4 (radius: 25) [04:33:48 -116301.028320] FAST spr round 5 (radius: 25) [04:36:24 -116297.715633] FAST spr round 6 (radius: 25) [04:38:54 -116297.715210] Model parameter optimization (eps = 1.000000) [04:39:17 -116292.694110] SLOW spr round 1 (radius: 5) [04:42:44 -116279.921519] SLOW spr round 2 (radius: 5) [04:46:08 -116279.774807] SLOW spr round 3 (radius: 5) [04:49:27 -116279.774372] SLOW spr round 4 (radius: 10) [04:52:39] [worker #1] ML tree search #7, logLikelihood: -116295.805820 [04:53:08 -116279.241937] SLOW spr round 5 (radius: 5) [04:57:36 -116279.240475] SLOW spr round 6 (radius: 10) [05:01:47 -116279.240234] SLOW spr round 7 (radius: 15) [05:02:51] [worker #2] ML tree search #13, logLikelihood: -116303.904721 [05:07:53 -116279.240195] SLOW spr round 8 (radius: 20) [05:17:25 -116279.240187] SLOW spr round 9 (radius: 25) [05:29:31 -116279.240186] Model parameter optimization (eps = 0.100000) [05:29:41] [worker #0] ML tree search #11, logLikelihood: -116279.134348 [05:29:42 -589661.830395] Initial branch length optimization [05:29:51 -474473.782652] Model parameter optimization (eps = 10.000000) [05:31:13 -473997.647050] AUTODETECT spr round 1 (radius: 5) [05:36:01 -318199.464560] AUTODETECT spr round 2 (radius: 10) [05:38:00] [worker #4] ML tree search #15, logLikelihood: -116273.124749 [05:41:14 -221281.314056] AUTODETECT spr round 3 (radius: 15) [05:46:43 -171787.184029] AUTODETECT spr round 4 (radius: 20) [05:52:48 -150769.679024] AUTODETECT spr round 5 (radius: 25) [05:54:00] [worker #3] ML tree search #14, logLikelihood: -116304.826527 [06:00:28 -141074.119970] SPR radius for FAST iterations: 25 (autodetect) [06:00:28 -141074.119970] Model parameter optimization (eps = 3.000000) [06:01:02 -140764.148704] FAST spr round 1 (radius: 25) [06:06:17 -118770.613699] FAST spr round 2 (radius: 25) [06:10:18 -117658.668743] FAST spr round 3 (radius: 25) [06:13:48 -117576.545978] FAST spr round 4 (radius: 25) [06:16:47 -117570.933110] FAST spr round 5 (radius: 25) [06:19:40 -117565.669323] FAST spr round 6 (radius: 25) [06:22:21 -117565.387370] FAST spr round 7 (radius: 25) [06:25:01 -117565.387357] Model parameter optimization (eps = 1.000000) [06:25:24 -117550.183542] SLOW spr round 1 (radius: 5) [06:29:02 -117535.560787] SLOW spr round 2 (radius: 5) [06:32:39 -117532.225504] SLOW spr round 3 (radius: 5) [06:36:10 -117532.225196] SLOW spr round 4 (radius: 10) [06:39:59 -117529.754285] SLOW spr round 5 (radius: 5) [06:44:41 -117529.754037] SLOW spr round 6 (radius: 10) [06:49:01 -117529.754036] SLOW spr round 7 (radius: 15) [06:49:17] [worker #1] ML tree search #12, logLikelihood: -116320.612815 [06:55:05 -117529.754035] SLOW spr round 8 (radius: 20) [07:03:54 -117529.754035] SLOW spr round 9 (radius: 25) [07:11:27] [worker #2] ML tree search #18, logLikelihood: -116273.249774 [07:14:50 -117529.754035] Model parameter optimization (eps = 0.100000) [07:14:58] [worker #0] ML tree search #16, logLikelihood: -117529.734775 [07:47:48] [worker #3] ML tree search #19, logLikelihood: -116279.666756 [08:00:03] [worker #4] ML tree search #20, logLikelihood: -116304.347550 [09:07:21] [worker #1] ML tree search #17, logLikelihood: -116291.266062 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.242625,0.391938) (0.232819,0.491488) (0.274687,0.993979) (0.249869,2.070862) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -116273.124749 AIC score: 236500.249499 / AICc score: 8057512.249499 / BIC score: 244172.063213 Free parameters (model + branch lengths): 1977 WARNING: Number of free parameters (K=1977) is larger than alignment size (n=358). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 231 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q2KJY2/3_mltree/Q2KJY2.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q2KJY2/3_mltree/Q2KJY2.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q2KJY2/3_mltree/Q2KJY2.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q2KJY2/3_mltree/Q2KJY2.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q2KJY2/3_mltree/Q2KJY2.raxml.log Analysis started: 05-Jul-2021 22:24:02 / finished: 06-Jul-2021 07:31:24 Elapsed time: 32841.737 seconds Consumed energy: 2488.262 Wh (= 12 km in an electric car, or 62 km with an e-scooter!)