RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 02:28:24 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q16828/2_msa/Q16828_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q16828/3_mltree/Q16828.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q16828/4_raxmlng_ancestral/Q16828 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622676504 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q16828/2_msa/Q16828_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 381 sites WARNING: Sequences tr_F1NCC5_F1NCC5_CHICK_9031 and tr_A0A226PX45_A0A226PX45_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q8BFV3_DUS4_MOUSE_10090 and sp_Q62767_DUS4_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YJZ3_M3YJZ3_MUSPF_9669 and tr_A0A2Y9ITU0_A0A2Y9ITU0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3HLJ1_A0A2I3HLJ1_NOMLE_61853 and tr_G3SCU3_G3SCU3_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HLJ1_A0A2I3HLJ1_NOMLE_61853 and tr_H2NI77_H2NI77_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3HLJ1_A0A2I3HLJ1_NOMLE_61853 and tr_E2R8S3_E2R8S3_CANLF_9615 are exactly identical! WARNING: Sequences tr_A0A2I3HLJ1_A0A2I3HLJ1_NOMLE_61853 and tr_H2Q6K9_H2Q6K9_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HLJ1_A0A2I3HLJ1_NOMLE_61853 and tr_F7HDH0_F7HDH0_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3HLJ1_A0A2I3HLJ1_NOMLE_61853 and tr_A0A287AJD2_A0A287AJD2_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A2I3HLJ1_A0A2I3HLJ1_NOMLE_61853 and tr_A0A096N5Z1_A0A096N5Z1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3HLJ1_A0A2I3HLJ1_NOMLE_61853 and tr_A0A0D9QUV6_A0A0D9QUV6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3HLJ1_A0A2I3HLJ1_NOMLE_61853 and tr_A0A2K5NJ58_A0A2K5NJ58_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3HLJ1_A0A2I3HLJ1_NOMLE_61853 and tr_A0A2K6DTX1_A0A2K6DTX1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3HLJ1_A0A2I3HLJ1_NOMLE_61853 and tr_A0A2K5Y6B2_A0A2K5Y6B2_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3HLJ1_A0A2I3HLJ1_NOMLE_61853 and tr_A0A2R9A2G0_A0A2R9A2G0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RSB9_G1RSB9_NOMLE_61853 and tr_G3RGY6_G3RGY6_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RSB9_G1RSB9_NOMLE_61853 and tr_A0A2I3SPQ6_A0A2I3SPQ6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RSB9_G1RSB9_NOMLE_61853 and tr_A0A2R9CJK5_A0A2R9CJK5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1S474_G1S474_NOMLE_61853 and tr_G3QSY8_G3QSY8_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1S474_G1S474_NOMLE_61853 and tr_H2PPY9_H2PPY9_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1S474_G1S474_NOMLE_61853 and tr_H2QVZ4_H2QVZ4_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S474_G1S474_NOMLE_61853 and tr_A0A2R9BJD9_A0A2R9BJD9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3H622_G3H622_CRIGR_10029 and tr_A0A1U7Q3U1_A0A1U7Q3U1_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3H9Q0_G3H9Q0_CRIGR_10029 and tr_A0A1U7R3Y4_A0A1U7R3Y4_MESAU_10036 are exactly identical! WARNING: Sequences tr_G3QW32_G3QW32_GORGO_9595 and tr_H2PHD7_H2PHD7_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QW32_G3QW32_GORGO_9595 and tr_H2QS06_H2QS06_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QW32_G3QW32_GORGO_9595 and sp_P28562_DUS1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QW32_G3QW32_GORGO_9595 and tr_A0A2R9A4E5_A0A2R9A4E5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RWC6_G3RWC6_GORGO_9595 and tr_H2Q5H0_H2Q5H0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RWC6_G3RWC6_GORGO_9595 and sp_Q9BY84_DUS16_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RWC6_G3RWC6_GORGO_9595 and tr_A0A0D9R8C3_A0A0D9R8C3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3RWC6_G3RWC6_GORGO_9595 and tr_A0A2R9AY57_A0A2R9AY57_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2N3N1_H2N3N1_PONAB_9601 and tr_A0A2I3TAP3_A0A2I3TAP3_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2N3N1_H2N3N1_PONAB_9601 and sp_Q9Y6W6_DUS10_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2N3N1_H2N3N1_PONAB_9601 and tr_A0A1U7TX94_A0A1U7TX94_TARSY_1868482 are exactly identical! WARNING: Sequences tr_E2R7G4_E2R7G4_CANLF_9615 and tr_F6S237_F6S237_HORSE_9796 are exactly identical! WARNING: Sequences tr_E2R7G4_E2R7G4_CANLF_9615 and tr_A0A2U3WI12_A0A2U3WI12_ODORO_9708 are exactly identical! WARNING: Sequences tr_J9NZB8_J9NZB8_CANLF_9615 and tr_F1SIY1_F1SIY1_PIG_9823 are exactly identical! WARNING: Sequences tr_J9NZB8_J9NZB8_CANLF_9615 and tr_M3WAW5_M3WAW5_FELCA_9685 are exactly identical! WARNING: Sequences tr_K7CSV8_K7CSV8_PANTR_9598 and sp_Q16829_DUS7_HUMAN_9606 are exactly identical! WARNING: Sequences tr_W5PKP4_W5PKP4_SHEEP_9940 and tr_F1MM08_F1MM08_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A3B5R2J4_A0A3B5R2J4_XIPMA_8083 and tr_A0A087YLX2_A0A087YLX2_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A158NUJ4_A0A158NUJ4_ATTCE_12957 and tr_A0A151I2K5_A0A151I2K5_9HYME_520822 are exactly identical! WARNING: Sequences tr_H0XL47_H0XL47_OTOGA_30611 and tr_A0A1U7T7H7_A0A1U7T7H7_TARSY_1868482 are exactly identical! WARNING: Sequences tr_F6YFQ2_F6YFQ2_MACMU_9544 and tr_G7PJV9_G7PJV9_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6YFQ2_F6YFQ2_MACMU_9544 and tr_A0A096NCT6_A0A096NCT6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6YFQ2_F6YFQ2_MACMU_9544 and tr_A0A2K5LG25_A0A2K5LG25_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7DFT5_F7DFT5_MACMU_9544 and tr_A0A2K5P134_A0A2K5P134_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7DFT5_F7DFT5_MACMU_9544 and tr_A0A2K6BWA3_A0A2K6BWA3_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7FRM2_F7FRM2_MACMU_9544 and tr_G7NTY0_G7NTY0_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7FRM2_F7FRM2_MACMU_9544 and tr_A0A096N7I5_A0A096N7I5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7FRM2_F7FRM2_MACMU_9544 and tr_A0A0D9RTM1_A0A0D9RTM1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7FRM2_F7FRM2_MACMU_9544 and tr_A0A2K5MY37_A0A2K5MY37_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7FRM2_F7FRM2_MACMU_9544 and tr_A0A2K6BFX0_A0A2K6BFX0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7FRM2_F7FRM2_MACMU_9544 and tr_A0A2K5Z753_A0A2K5Z753_MANLE_9568 are exactly identical! WARNING: Sequences tr_H0YWV8_H0YWV8_TAEGU_59729 and tr_A0A218UVL8_A0A218UVL8_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZCI9_H0ZCI9_TAEGU_59729 and tr_A0A0Q3UQ52_A0A0Q3UQ52_AMAAE_12930 are exactly identical! WARNING: Sequences tr_H0ZCI9_H0ZCI9_TAEGU_59729 and tr_A0A1V4KN06_A0A1V4KN06_PATFA_372326 are exactly identical! WARNING: Sequences tr_H0ZCI9_H0ZCI9_TAEGU_59729 and tr_A0A218VBB3_A0A218VBB3_9PASE_299123 are exactly identical! WARNING: Sequences tr_D2H873_D2H873_AILME_9646 and tr_A0A384DDY0_A0A384DDY0_URSMA_29073 are exactly identical! WARNING: Sequences tr_L5L2B0_L5L2B0_PTEAL_9402 and tr_A0A384C7Z9_A0A384C7Z9_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A096MP15_A0A096MP15_PAPAN_9555 and tr_A0A0D9RN33_A0A0D9RN33_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096MP15_A0A096MP15_PAPAN_9555 and tr_A0A2K5MDT8_A0A2K5MDT8_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096N045_A0A096N045_PAPAN_9555 and tr_A0A0D9R3M5_A0A0D9R3M5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096N045_A0A096N045_PAPAN_9555 and tr_A0A2K5KMU3_A0A2K5KMU3_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096N045_A0A096N045_PAPAN_9555 and tr_A0A2K6DCR2_A0A2K6DCR2_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096N3B1_A0A096N3B1_PAPAN_9555 and tr_A0A0D9RTJ0_A0A0D9RTJ0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A096N3B1_A0A096N3B1_PAPAN_9555 and tr_A0A2K6DAU1_A0A2K6DAU1_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096N3B1_A0A096N3B1_PAPAN_9555 and tr_A0A2K6AIU6_A0A2K6AIU6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A096NAU6_A0A096NAU6_PAPAN_9555 and tr_A0A0D9RB59_A0A0D9RB59_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A0D9QYP3_A0A0D9QYP3_CHLSB_60711 and tr_A0A2K5N452_A0A2K5N452_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A151P477_A0A151P477_ALLMI_8496 and tr_A0A1U7S0V6_A0A1U7S0V6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091EBZ5_A0A091EBZ5_CORBR_85066 and tr_A0A093GKS7_A0A093GKS7_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091JBZ5_A0A091JBZ5_EGRGA_188379 and tr_A0A091WXQ1_A0A091WXQ1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JBZ5_A0A091JBZ5_EGRGA_188379 and tr_A0A087QXD4_A0A087QXD4_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JBZ5_A0A091JBZ5_EGRGA_188379 and tr_A0A091WCW8_A0A091WCW8_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091JXX8_A0A091JXX8_EGRGA_188379 and tr_A0A093PWX4_A0A093PWX4_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091JXX8_A0A091JXX8_EGRGA_188379 and tr_A0A093H4P2_A0A093H4P2_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091JXX8_A0A091JXX8_EGRGA_188379 and tr_A0A0A0AUI8_A0A0A0AUI8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JXX8_A0A091JXX8_EGRGA_188379 and tr_A0A093GXB8_A0A093GXB8_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091V191_A0A091V191_NIPNI_128390 and tr_A0A091G2V4_A0A091G2V4_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A2I0M4Y4_A0A2I0M4Y4_COLLI_8932 and tr_A0A1V4JKG4_A0A1V4JKG4_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3A0C7_A0A1S3A0C7_ERIEU_9365 and tr_A0A383ZI61_A0A383ZI61_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A1S3L1C5_A0A1S3L1C5_SALSA_8030 and tr_A0A060VZT8_A0A060VZT8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_C0H970_C0H970_SALSA_8030 and tr_A0A060XQJ9_A0A060XQJ9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MRW2_A0A226MRW2_CALSU_9009 and tr_A0A226PLI5_A0A226PLI5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MXE8_A0A226MXE8_CALSU_9009 and tr_A0A226PRQ5_A0A226PRQ5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2U3UYV9_A0A2U3UYV9_TURTR_9739 and tr_A0A2Y9N604_A0A2Y9N604_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3UZS3_A0A2U3UZS3_TURTR_9739 and tr_A0A2Y9LEU5_A0A2Y9LEU5_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3UZS3_A0A2U3UZS3_TURTR_9739 and tr_A0A383YT74_A0A383YT74_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U3V1Y3_A0A2U3V1Y3_TURTR_9739 and tr_A0A2Y9Q5J5_A0A2Y9Q5J5_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3WZ00_A0A2U3WZ00_ODORO_9708 and tr_A0A2U3Y5P3_A0A2U3Y5P3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9N377_A0A2Y9N377_DELLE_9749 and tr_A0A2Y9EP10_A0A2Y9EP10_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 93 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q16828/4_raxmlng_ancestral/Q16828.raxml.reduced.phy Alignment comprises 1 partitions and 381 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 381 Gaps: 18.60 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q16828/4_raxmlng_ancestral/Q16828.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q16828/3_mltree/Q16828.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 96 / 7680 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -138535.770157 [00:00:00 -138535.770157] Initial branch length optimization [00:00:01 -110653.709549] Model parameter optimization (eps = 0.100000) [00:00:42] Tree #1, final logLikelihood: -110329.621669 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.189164,0.249852) (0.110586,0.630398) (0.323565,0.736537) (0.376686,1.711525) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q16828/4_raxmlng_ancestral/Q16828.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q16828/4_raxmlng_ancestral/Q16828.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q16828/4_raxmlng_ancestral/Q16828.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q16828/4_raxmlng_ancestral/Q16828.raxml.log Analysis started: 03-Jun-2021 02:28:24 / finished: 03-Jun-2021 02:29:10 Elapsed time: 45.950 seconds Consumed energy: 3.368 Wh