RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 14:00:11 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16676/2_msa/Q16676_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16676/3_mltree/Q16676.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16676/4_raxmlng_ancestral/Q16676 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622804411 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16676/2_msa/Q16676_nogap_msa.fasta [00:00:00] Loaded alignment with 1000 taxa and 465 sites WARNING: Sequences tr_B4QYR8_B4QYR8_DROSI_7240 and sp_P14734_FKH_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QYR8_B4QYR8_DROSI_7240 and tr_B4IH17_B4IH17_DROSE_7238 are exactly identical! WARNING: Sequences tr_A0A1D5NX62_A0A1D5NX62_CHICK_9031 and tr_A0A226MTE7_A0A226MTE7_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5NX62_A0A1D5NX62_CHICK_9031 and tr_A0A226P490_A0A226P490_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_M3Z6V5_M3Z6V5_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_G1RLU0_G1RLU0_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_G3GRN3_G3GRN3_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_E2R277_E2R277_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_H2Q9J4_H2Q9J4_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_F6WWP4_F6WWP4_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_I3NDG9_I3NDG9_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_H0XYS0_H0XYS0_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and sp_Q99853_FOXB1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_F7D628_F7D628_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_G5AWC3_G5AWC3_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_F7DU19_F7DU19_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_D2HLR1_D2HLR1_AILME_9646 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_E1B7H0_E1B7H0_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_L5K224_L5K224_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_M3XBW1_M3XBW1_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A096NEC7_A0A096NEC7_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A0D9SEE6_A0A0D9SEE6_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A3Q0D0R3_A0A3Q0D0R3_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A2K5L201_A0A2K5L201_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A2K6AW98_A0A2K6AW98_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A2U3WEA6_A0A2U3WEA6_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A2U3YUG8_A0A2U3YUG8_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A2Y9K7L1_A0A2Y9K7L1_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A2Y9NVG0_A0A2Y9NVG0_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A2Y9FBI2_A0A2Y9FBI2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YXU1_M3YXU1_MUSPF_9669 and tr_A0A2U3VWQ0_A0A2U3VWQ0_ODORO_9708 are exactly identical! WARNING: Sequences sp_P32028_FD4_DROME_7227 and tr_B4IJF7_B4IJF7_DROSE_7238 are exactly identical! WARNING: Sequences tr_G3RYD0_G3RYD0_GORGO_9595 and sp_Q9Y261_FOXA2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_Q28X48_Q28X48_DROPS_46245 and tr_B4H512_B4H512_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A2I3RDC3_A0A2I3RDC3_PANTR_9598 and sp_P55317_FOXA1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M4AV22_M4AV22_XIPMA_8083 and tr_A0A087XTC8_A0A087XTC8_POEFO_48698 are exactly identical! WARNING: Sequences tr_H9J6F9_H9J6F9_BOMMO_7091 and sp_Q17241_SGF1_BOMMO_7091 are exactly identical! WARNING: Sequences tr_A0A158NCG0_A0A158NCG0_ATTCE_12957 and tr_A0A195BXA0_A0A195BXA0_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158ND77_A0A158ND77_ATTCE_12957 and tr_A0A195B0T4_A0A195B0T4_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NJ79_A0A158NJ79_ATTCE_12957 and tr_A0A195B6K2_A0A195B6K2_9HYME_520822 are exactly identical! WARNING: Sequences tr_F6Q3J5_F6Q3J5_MACMU_9544 and tr_A0A2I3NEP0_A0A2I3NEP0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6Q3J5_F6Q3J5_MACMU_9544 and tr_A0A0D9S242_A0A0D9S242_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6Q3J5_F6Q3J5_MACMU_9544 and tr_A0A2K6DF64_A0A2K6DF64_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6Q3J5_F6Q3J5_MACMU_9544 and tr_A0A2K5Z9S7_A0A2K5Z9S7_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6YQ64_F6YQ64_MACMU_9544 and tr_A0A096NUN4_A0A096NUN4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6YQ64_F6YQ64_MACMU_9544 and tr_A0A0D9RSE6_A0A0D9RSE6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6YQ64_F6YQ64_MACMU_9544 and tr_A0A2K5N716_A0A2K5N716_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6YQ64_F6YQ64_MACMU_9544 and tr_A0A2K6CVT5_A0A2K6CVT5_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7D2T8_F7D2T8_MACMU_9544 and tr_A0A096MMP8_A0A096MMP8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7D2T8_F7D2T8_MACMU_9544 and tr_A0A0D9RF89_A0A0D9RF89_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7D2T8_F7D2T8_MACMU_9544 and tr_A0A2K5M2A1_A0A2K5M2A1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7D2T8_F7D2T8_MACMU_9544 and tr_A0A2K6ATQ4_A0A2K6ATQ4_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7D313_F7D313_MACMU_9544 and tr_A0A2K6CY95_A0A2K6CY95_MACNE_9545 are exactly identical! WARNING: Sequences tr_E5SNE3_E5SNE3_TRISP_6334 and tr_A0A0V0VXB8_A0A0V0VXB8_9BILA_181606 are exactly identical! WARNING: Sequences tr_H0Z4R5_H0Z4R5_TAEGU_59729 and tr_A0A1V4JDA3_A0A1V4JDA3_PATFA_372326 are exactly identical! WARNING: Sequences tr_F4X781_F4X781_ACREC_103372 and tr_A0A195DJ83_A0A195DJ83_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A0D9SAF9_A0A0D9SAF9_CHLSB_60711 and tr_A0A2K6B269_A0A2K6B269_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A091J102_A0A091J102_EGRGA_188379 and tr_A0A091G702_A0A091G702_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091J102_A0A091J102_EGRGA_188379 and tr_A0A091IFM1_A0A091IFM1_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091USI2_A0A091USI2_NIPNI_128390 and tr_A0A087QY64_A0A087QY64_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091W007_A0A091W007_NIPNI_128390 and tr_A0A093HII6_A0A093HII6_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091W007_A0A091W007_NIPNI_128390 and tr_A0A091VBJ0_A0A091VBJ0_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091W007_A0A091W007_NIPNI_128390 and tr_A0A0A0APC4_A0A0A0APC4_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 and tr_A0A0V1CZ04_A0A0V1CZ04_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 and tr_A0A0V0WXU4_A0A0V0WXU4_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 and tr_A0A0V1KXM3_A0A0V1KXM3_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 and tr_A0A0V0ZXJ4_A0A0V0ZXJ4_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 and tr_A0A0V1NSS3_A0A0V1NSS3_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CIE7_A0A0V1CIE7_TRIBR_45882 and tr_A0A0V0U6A9_A0A0V0U6A9_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0WDS8_A0A0V0WDS8_9BILA_92179 and tr_A0A0V1LJX1_A0A0V1LJX1_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A1S3LX54_A0A1S3LX54_SALSA_8030 and tr_A0A060Y253_A0A060Y253_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3T5U4_A0A1S3T5U4_SALSA_8030 and tr_A0A060XBP8_A0A060XBP8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MP36_A0A226MP36_CALSU_9009 and tr_A0A226PQD1_A0A226PQD1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MS78_A0A226MS78_CALSU_9009 and tr_A0A226PFX9_A0A226PFX9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MSD7_A0A226MSD7_CALSU_9009 and tr_A0A226PG57_A0A226PG57_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MSM9_A0A226MSM9_CALSU_9009 and tr_A0A226PPN8_A0A226PPN8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0SWT4_A0A2D0SWT4_ICTPU_7998 and tr_A0A2D0SWU4_A0A2D0SWU4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U3V8N5_A0A2U3V8N5_TURTR_9739 and tr_A0A2Y9N4R7_A0A2Y9N4R7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V8N5_A0A2U3V8N5_TURTR_9739 and tr_A0A2Y9SCQ3_A0A2Y9SCQ3_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4AQS4_A0A2U4AQS4_TURTR_9739 and tr_A0A2Y9PSS8_A0A2Y9PSS8_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BJ79_A0A2U4BJ79_TURTR_9739 and tr_A0A2Y9NCP2_A0A2Y9NCP2_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 81 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16676/4_raxmlng_ancestral/Q16676.raxml.reduced.phy Alignment comprises 1 partitions and 465 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 465 Gaps: 48.37 % Invariant sites: 3.23 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16676/4_raxmlng_ancestral/Q16676.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16676/3_mltree/Q16676.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 117 / 9360 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -279900.980195 [00:00:00 -279900.980195] Initial branch length optimization [00:00:01 -139921.891117] Model parameter optimization (eps = 0.100000) [00:00:47] Tree #1, final logLikelihood: -139568.676600 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.127631,0.038644) (0.095718,0.072574) (0.171394,0.636228) (0.605258,1.452399) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16676/4_raxmlng_ancestral/Q16676.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16676/4_raxmlng_ancestral/Q16676.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16676/4_raxmlng_ancestral/Q16676.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16676/4_raxmlng_ancestral/Q16676.raxml.log Analysis started: 04-Jun-2021 14:00:11 / finished: 04-Jun-2021 14:01:02 Elapsed time: 51.427 seconds