RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 14:11:20 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16671/2_msa/Q16671_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16671/3_mltree/Q16671.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16671/4_raxmlng_ancestral/Q16671 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622805080 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16671/2_msa/Q16671_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 573 sites WARNING: Sequences tr_F1NCI7_F1NCI7_CHICK_9031 and sp_Q90670_AVR2B_CHICK_9031 are exactly identical! WARNING: Sequences sp_P27040_AVR2B_MOUSE_10090 and sp_P38445_AVR2B_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XMQ1_M3XMQ1_MUSPF_9669 and tr_F1PCC1_F1PCC1_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XMQ1_M3XMQ1_MUSPF_9669 and tr_A0A2U3VFL6_A0A2U3VFL6_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XMQ1_M3XMQ1_MUSPF_9669 and tr_A0A2Y9IQ32_A0A2Y9IQ32_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YBS0_M3YBS0_MUSPF_9669 and tr_E2QW66_E2QW66_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YBS0_M3YBS0_MUSPF_9669 and tr_G1LTU6_G1LTU6_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YBS0_M3YBS0_MUSPF_9669 and tr_A0A2U3WMM9_A0A2U3WMM9_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YBS0_M3YBS0_MUSPF_9669 and tr_A0A2Y9J3I8_A0A2Y9J3I8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YBS0_M3YBS0_MUSPF_9669 and tr_A0A384CHL7_A0A384CHL7_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3HEB5_A0A2I3HEB5_NOMLE_61853 and tr_A0A2I2YY32_A0A2I2YY32_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HEB5_A0A2I3HEB5_NOMLE_61853 and sp_Q13873_BMPR2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RVC0_G1RVC0_NOMLE_61853 and tr_A0A2R8ZLH8_A0A2R8ZLH8_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2Y6J8_A0A2I2Y6J8_GORGO_9595 and tr_A0A2R9BFF9_A0A2R9BFF9_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2YVY6_A0A2I2YVY6_GORGO_9595 and tr_A0A0D9RTS1_A0A0D9RTS1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2ZVD2_A0A2I2ZVD2_GORGO_9595 and tr_A0A2I3S7X1_A0A2I3S7X1_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZVD2_A0A2I2ZVD2_GORGO_9595 and tr_A0A2R9AE23_A0A2R9AE23_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QMC3_G3QMC3_GORGO_9595 and tr_A0A2J8XW64_A0A2J8XW64_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QMC3_G3QMC3_GORGO_9595 and tr_H2Q272_H2Q272_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QMC3_G3QMC3_GORGO_9595 and sp_P36894_BMR1A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QMC3_G3QMC3_GORGO_9595 and tr_F7H4T8_F7H4T8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QMC3_G3QMC3_GORGO_9595 and tr_A0A2I3N1X1_A0A2I3N1X1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QMC3_G3QMC3_GORGO_9595 and tr_A0A2K5M2A7_A0A2K5M2A7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QMC3_G3QMC3_GORGO_9595 and tr_A0A2K6C2T9_A0A2K6C2T9_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QMC3_G3QMC3_GORGO_9595 and tr_A0A2K5Z0L3_A0A2K5Z0L3_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QMC3_G3QMC3_GORGO_9595 and tr_A0A2R9BVX7_A0A2R9BVX7_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2J8SXN2_A0A2J8SXN2_PONAB_9601 and tr_A0A0D9R0J5_A0A0D9R0J5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2PB53_H2PB53_PONAB_9601 and tr_A0A2I3SJM1_A0A2I3SJM1_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2PB53_H2PB53_PONAB_9601 and sp_Q13705_AVR2B_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PB53_H2PB53_PONAB_9601 and tr_A0A2I3LN25_A0A2I3LN25_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2PB53_H2PB53_PONAB_9601 and tr_A0A2K5MTS0_A0A2K5MTS0_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2PB53_H2PB53_PONAB_9601 and tr_A0A2K6C802_A0A2K6C802_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2PSV9_H2PSV9_PONAB_9601 and tr_A0A0D9RF96_A0A0D9RF96_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2PSV9_H2PSV9_PONAB_9601 and tr_A0A3Q0DSX6_A0A3Q0DSX6_TARSY_1868482 are exactly identical! WARNING: Sequences tr_Q299T8_Q299T8_DROPS_46245 and tr_B4G5Q5_B4G5Q5_DROPE_7234 are exactly identical! WARNING: Sequences tr_H2QIU8_H2QIU8_PANTR_9598 and tr_A0A2R9BBB6_A0A2R9BBB6_PANPA_9597 are exactly identical! WARNING: Sequences tr_H0WPB6_H0WPB6_OTOGA_30611 and tr_G7PRU8_G7PRU8_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A286XCP6_A0A286XCP6_CAVPO_10141 and tr_F7HJS7_F7HJS7_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A286XCP6_A0A286XCP6_CAVPO_10141 and tr_A7YWG6_A7YWG6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F7H249_F7H249_MACMU_9544 and tr_G7PL79_G7PL79_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7H249_F7H249_MACMU_9544 and tr_A0A096MZD4_A0A096MZD4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7H249_F7H249_MACMU_9544 and tr_A0A0D9RDM2_A0A0D9RDM2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7H249_F7H249_MACMU_9544 and tr_A0A2K6C0I0_A0A2K6C0I0_MACNE_9545 are exactly identical! WARNING: Sequences tr_Q7PDC5_Q7PDC5_ANOGA_7165 and tr_Q7Q466_Q7Q466_ANOGA_7165 are exactly identical! WARNING: Sequences tr_G3UDV2_G3UDV2_LOXAF_9785 and tr_D3K5N5_D3K5N5_PIG_9823 are exactly identical! WARNING: Sequences tr_G3UDV2_G3UDV2_LOXAF_9785 and tr_F1MSQ2_F1MSQ2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_H0ZIM1_H0ZIM1_TAEGU_59729 and tr_A0A091EPQ5_A0A091EPQ5_CORBR_85066 are exactly identical! WARNING: Sequences tr_F6REM9_F6REM9_CALJA_9483 and tr_G7P5Y0_G7P5Y0_MACFA_9541 are exactly identical! WARNING: Sequences tr_F1MCE7_F1MCE7_BOVIN_9913 and tr_A0A2Y9TA35_A0A2Y9TA35_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F1MCE7_F1MCE7_BOVIN_9913 and tr_A0A383ZHP5_A0A383ZHP5_BALAS_310752 are exactly identical! WARNING: Sequences tr_F1MH84_F1MH84_BOVIN_9913 and sp_Q95126_AVR2B_BOVIN_9913 are exactly identical! WARNING: Sequences tr_L5L6H2_L5L6H2_PTEAL_9402 and tr_A0A384D7R6_A0A384D7R6_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3VZT9_M3VZT9_FELCA_9685 and tr_A0A2U3WSP8_A0A2U3WSP8_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3VZT9_M3VZT9_FELCA_9685 and tr_A0A2Y9KTY4_A0A2Y9KTY4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3VZT9_M3VZT9_FELCA_9685 and tr_A0A2Y9TAV5_A0A2Y9TAV5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_U3JBE7_U3JBE7_FICAL_59894 and tr_A0A218U9E3_A0A218U9E3_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A096MTD0_A0A096MTD0_PAPAN_9555 and tr_A0A2K6AS21_A0A2K6AS21_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A096MTD0_A0A096MTD0_PAPAN_9555 and tr_A0A2K5YZ50_A0A2K5YZ50_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A096NRY2_A0A096NRY2_PAPAN_9555 and tr_A0A2K5MZP9_A0A2K5MZP9_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3LDV3_A0A2I3LDV3_PAPAN_9555 and tr_A0A2K5LBZ9_A0A2K5LBZ9_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3LDV3_A0A2I3LDV3_PAPAN_9555 and tr_A0A2K5YT67_A0A2K5YT67_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A151MRQ1_A0A151MRQ1_ALLMI_8496 and tr_A0A1U7SFB6_A0A1U7SFB6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151N9A5_A0A151N9A5_ALLMI_8496 and tr_A0A1U8D3Y9_A0A1U8D3Y9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091ED58_A0A091ED58_CORBR_85066 and tr_A0A087QSP6_A0A087QSP6_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091ED58_A0A091ED58_CORBR_85066 and tr_A0A091WNP7_A0A091WNP7_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091ED58_A0A091ED58_CORBR_85066 and tr_A0A0A0AEB0_A0A0A0AEB0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JK81_A0A091JK81_EGRGA_188379 and tr_A0A0A0AM36_A0A0A0AM36_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A087RIF6_A0A087RIF6_APTFO_9233 and tr_A0A091WQQ1_A0A091WQQ1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A0V1CME1_A0A0V1CME1_TRIBR_45882 and tr_A0A0V0VC13_A0A0V0VC13_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CME1_A0A0V1CME1_TRIBR_45882 and tr_A0A0V1PC28_A0A0V1PC28_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CME1_A0A0V1CME1_TRIBR_45882 and tr_A0A0V0TV85_A0A0V0TV85_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1CNZ1_A0A0V1CNZ1_TRIBR_45882 and tr_A0A0V0UZF4_A0A0V0UZF4_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CNZ1_A0A0V1CNZ1_TRIBR_45882 and tr_A0A0V1L356_A0A0V1L356_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1CNZ1_A0A0V1CNZ1_TRIBR_45882 and tr_A0A0V1NRZ1_A0A0V1NRZ1_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CNZ1_A0A0V1CNZ1_TRIBR_45882 and tr_A0A0V0UD44_A0A0V0UD44_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1L499_A0A0V1L499_9BILA_6335 and tr_A0A0V1A0R2_A0A0V1A0R2_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A1S3LKB8_A0A1S3LKB8_SALSA_8030 and tr_C0HBI7_C0HBI7_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A0M4E870_A0A0M4E870_DROBS_30019 and tr_A0A0M4EJB0_A0A0M4EJB0_DROBS_30019 are exactly identical! WARNING: Sequences tr_A0A226MK05_A0A226MK05_CALSU_9009 and tr_A0A226NPT9_A0A226NPT9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2U4AKH7_A0A2U4AKH7_TURTR_9739 and tr_A0A2Y9M7N1_A0A2Y9M7N1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4ALZ8_A0A2U4ALZ8_TURTR_9739 and tr_A0A384A9X1_A0A384A9X1_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4BNC6_A0A2U4BNC6_TURTR_9739 and tr_A0A2Y9MMB7_A0A2Y9MMB7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CBD2_A0A2U4CBD2_TURTR_9739 and tr_A0A2Y9SMU5_A0A2Y9SMU5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4CGK0_A0A2U4CGK0_TURTR_9739 and tr_A0A2U3ZET6_A0A2U3ZET6_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A2U4CGK0_A0A2U4CGK0_TURTR_9739 and tr_A0A2Y9QES0_A0A2Y9QES0_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2Y9SPM8_A0A2Y9SPM8_PHYCD_9755 and tr_A0A384ATI5_A0A384ATI5_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 86 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16671/4_raxmlng_ancestral/Q16671.raxml.reduced.phy Alignment comprises 1 partitions and 573 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 573 Gaps: 30.06 % Invariant sites: 1.22 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16671/4_raxmlng_ancestral/Q16671.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16671/3_mltree/Q16671.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 144 / 11520 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -180271.626501 [00:00:00 -180271.626501] Initial branch length optimization [00:00:01 -163878.066240] Model parameter optimization (eps = 0.100000) [00:00:47] Tree #1, final logLikelihood: -163335.695195 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.197331,0.249892) (0.157582,0.306804) (0.399392,0.924163) (0.245695,2.170327) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16671/4_raxmlng_ancestral/Q16671.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16671/4_raxmlng_ancestral/Q16671.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16671/4_raxmlng_ancestral/Q16671.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q16671/4_raxmlng_ancestral/Q16671.raxml.log Analysis started: 04-Jun-2021 14:11:20 / finished: 04-Jun-2021 14:12:13 Elapsed time: 52.626 seconds