RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 17:52:21 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15831/2_msa/Q15831_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15831/3_mltree/Q15831.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15831/4_raxmlng_ancestral/Q15831 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622645541 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15831/2_msa/Q15831_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 433 sites WARNING: Sequences tr_Q2PUH1_Q2PUH1_CHICK_9031 and tr_H0YVD1_H0YVD1_TAEGU_59729 are exactly identical! WARNING: Sequences tr_Q2PUH1_Q2PUH1_CHICK_9031 and tr_U3JH39_U3JH39_FICAL_59894 are exactly identical! WARNING: Sequences tr_Q2PUH1_Q2PUH1_CHICK_9031 and tr_A0A091G1U3_A0A091G1U3_9AVES_55661 are exactly identical! WARNING: Sequences tr_Q2PUH1_Q2PUH1_CHICK_9031 and tr_A0A2I0LTY0_A0A2I0LTY0_COLLI_8932 are exactly identical! WARNING: Sequences tr_Q2PUH1_Q2PUH1_CHICK_9031 and tr_A0A226PAG8_A0A226PAG8_COLVI_9014 are exactly identical! WARNING: Sequences tr_C4P7R3_C4P7R3_SELML_88036 and tr_D8RUW4_D8RUW4_SELML_88036 are exactly identical! WARNING: Sequences tr_C4P7R6_C4P7R6_SELML_88036 and tr_D8TDQ2_D8TDQ2_SELML_88036 are exactly identical! WARNING: Sequences tr_H2PFE9_H2PFE9_PONAB_9601 and sp_Q13131_AAPK1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PFE9_H2PFE9_PONAB_9601 and tr_G3TJJ9_G3TJJ9_LOXAF_9785 are exactly identical! WARNING: Sequences tr_H2PFE9_H2PFE9_PONAB_9601 and tr_A0A3Q0CDP0_A0A3Q0CDP0_MESAU_10036 are exactly identical! WARNING: Sequences tr_H2PFE9_H2PFE9_PONAB_9601 and tr_A0A2U4AXF2_A0A2U4AXF2_TURTR_9739 are exactly identical! WARNING: Sequences tr_H2PFE9_H2PFE9_PONAB_9601 and tr_A0A2Y9SM69_A0A2Y9SM69_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F7BFG2_F7BFG2_MONDO_13616 and tr_G3WMJ5_G3WMJ5_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A158P322_A0A158P322_ATTCE_12957 and tr_A0A195BBZ2_A0A195BBZ2_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A0E0GL17_A0A0E0GL17_ORYNI_4536 and tr_A0A0E0CZ52_A0A0E0CZ52_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0GL17_A0A0E0GL17_ORYNI_4536 and tr_A0A0D3FH66_A0A0D3FH66_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0GL17_A0A0E0GL17_ORYNI_4536 and tr_A0A0D9Z5S1_A0A0D9Z5S1_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0GND8_A0A0E0GND8_ORYNI_4536 and sp_B8BBT7_OSK4_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0GND8_A0A0E0GND8_ORYNI_4536 and tr_I1QJL0_I1QJL0_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0GND8_A0A0E0GND8_ORYNI_4536 and tr_A0A0E0QKF9_A0A0E0QKF9_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0GND8_A0A0E0GND8_ORYNI_4536 and tr_A0A0E0AWT1_A0A0E0AWT1_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0GND8_A0A0E0GND8_ORYNI_4536 and sp_Q852Q1_OSK4_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_E5SK16_E5SK16_TRISP_6334 and tr_A0A0V0RPG2_A0A0V0RPG2_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5SK16_E5SK16_TRISP_6334 and tr_A0A0V0VE24_A0A0V0VE24_9BILA_181606 are exactly identical! WARNING: Sequences sp_A2XFF4_OSK3_ORYSI_39946 and sp_Q852Q0_OSK3_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A2ZAR9_A2ZAR9_ORYSI_39946 and tr_I1QX69_I1QX69_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A2ZAR9_A2ZAR9_ORYSI_39946 and sp_Q2RBF0_CIPKF_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_I1NME1_I1NME1_ORYGL_4538 and tr_A0A0D3EMR6_A0A0D3EMR6_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_I1Q837_I1Q837_ORYGL_4538 and sp_Q6ZLP5_CIPKN_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_I1R3E9_I1R3E9_ORYGL_4538 and tr_A0A0E0RCV3_A0A0E0RCV3_ORYRU_4529 are exactly identical! WARNING: Sequences tr_I1R3E9_I1R3E9_ORYGL_4538 and tr_A0A0D3HQM1_A0A0D3HQM1_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_I1R3E9_I1R3E9_ORYGL_4538 and tr_A0A0E0BMX9_A0A0E0BMX9_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_I1R3E9_I1R3E9_ORYGL_4538 and sp_Q2QYM3_CIPKE_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0PQB0_A0A0E0PQB0_ORYRU_4529 and tr_A0A0D3GA30_A0A0D3GA30_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0PQB0_A0A0E0PQB0_ORYRU_4529 and tr_A0A0E0A1Y2_A0A0E0A1Y2_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0PQB0_A0A0E0PQB0_ORYRU_4529 and sp_Q852Q2_OSK1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0Q426_A0A0E0Q426_ORYRU_4529 and tr_A0A0D3GMC1_A0A0D3GMC1_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0Q426_A0A0E0Q426_ORYRU_4529 and tr_A0A0E0AFS7_A0A0E0AFS7_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_M4DUG3_M4DUG3_BRARP_51351 and tr_A0A078F7N4_A0A078F7N4_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4DZP5_M4DZP5_BRARP_51351 and tr_A0A078GMA4_A0A078GMA4_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4FDH5_M4FDH5_BRARP_51351 and tr_A0A078HGW6_A0A078HGW6_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4FDH5_M4FDH5_BRARP_51351 and tr_A0A078HZG1_A0A078HZG1_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4FDH5_M4FDH5_BRARP_51351 and tr_A0A0D3CNH1_A0A0D3CNH1_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M7YPF8_M7YPF8_TRIUA_4572 and tr_A0A077S3C9_A0A077S3C9_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M7YPF8_M7YPF8_TRIUA_4572 and tr_A0A3B6EJ97_A0A3B6EJ97_WHEAT_4565 are exactly identical! WARNING: Sequences tr_W2QID6_W2QID6_PHYPN_761204 and tr_W2NTH4_W2NTH4_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W2QL78_W2QL78_PHYPN_761204 and tr_A0A0W8BYP6_A0A0W8BYP6_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2QL78_W2QL78_PHYPN_761204 and tr_W2LQ86_W2LQ86_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A0K1YXN8_A0A0K1YXN8_WHEAT_4565 and tr_A0A3B5Y4P9_A0A3B5Y4P9_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A3B6IRU7_A0A3B6IRU7_WHEAT_4565 and tr_A0A3B6JLJ0_A0A3B6JLJ0_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A015JK64_A0A015JK64_9GLOM_1432141 and tr_A0A2H5TTM7_A0A2H5TTM7_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A067E3L7_A0A067E3L7_CITSI_2711 and tr_V4S5R0_V4S5R0_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067GBB0_A0A067GBB0_CITSI_2711 and tr_A0A2H5PK82_A0A2H5PK82_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A078J1F3_A0A078J1F3_BRANA_3708 and tr_A0A0D3AG33_A0A0D3AG33_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078JUJ9_A0A078JUJ9_BRANA_3708 and tr_A0A0D3D9C7_A0A0D3D9C7_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078JX19_A0A078JX19_BRANA_3708 and tr_A0A0D3ECD5_A0A0D3ECD5_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A0A0K9T5_A0A0A0K9T5_CUCSA_3659 and tr_A0A1S3CC88_A0A1S3CC88_CUCME_3656 are exactly identical! WARNING: Sequences tr_V4U9W1_V4U9W1_9ROSI_85681 and tr_A0A2H5N569_A0A2H5N569_CITUN_55188 are exactly identical! WARNING: Sequences tr_V4UKC0_V4UKC0_9ROSI_85681 and tr_A0A2H5N3C4_A0A2H5N3C4_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A0D2PW54_A0A0D2PW54_GOSRA_29730 and tr_A0A1U8N4F0_A0A1U8N4F0_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2Q1M7_A0A0D2Q1M7_GOSRA_29730 and tr_A0A1U8HW88_A0A1U8HW88_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2Q1M7_A0A0D2Q1M7_GOSRA_29730 and tr_A0A1U8I3Z0_A0A1U8I3Z0_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A151MX04_A0A151MX04_ALLMI_8496 and tr_A0A1U7S978_A0A1U7S978_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0L9TK21_A0A0L9TK21_PHAAN_3914 and tr_A0A1S3VYV9_A0A1S3VYV9_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A0V0WN55_A0A0V0WN55_9BILA_92179 and tr_A0A0V1L627_A0A0V1L627_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0WN55_A0A0V0WN55_9BILA_92179 and tr_A0A0V0TTC3_A0A0V0TTC3_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A1S3YSI0_A0A1S3YSI0_TOBAC_4097 and tr_A0A1U7WTI2_A0A1U7WTI2_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3Z9L4_A0A1S3Z9L4_TOBAC_4097 and tr_A0A1U7X3D4_A0A1U7X3D4_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3ZL25_A0A1S3ZL25_TOBAC_4097 and tr_A0A1U7XTQ4_A0A1U7XTQ4_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AXQ0_A0A1S4AXQ0_TOBAC_4097 and tr_A0A1U7Y9W5_A0A1U7Y9W5_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AY09_A0A1S4AY09_TOBAC_4097 and tr_A0A1U7YG40_A0A1U7YG40_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4BI54_A0A1S4BI54_TOBAC_4097 and tr_A0A1J6J123_A0A1J6J123_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A2K6BFK3_A0A2K6BFK3_MACNE_9545 and tr_A0A2K5ZHZ2_A0A2K5ZHZ2_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U1KWL1_A0A2U1KWL1_ARTAN_35608 and tr_A0A2U1LEP2_A0A2U1LEP2_ARTAN_35608 are exactly identical! WARNING: Duplicate sequences found: 74 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15831/4_raxmlng_ancestral/Q15831.raxml.reduced.phy Alignment comprises 1 partitions and 433 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 433 Gaps: 22.44 % Invariant sites: 1.62 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15831/4_raxmlng_ancestral/Q15831.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15831/3_mltree/Q15831.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 109 / 8720 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -156225.851152 [00:00:00 -156225.851152] Initial branch length optimization [00:00:00 -155421.014228] Model parameter optimization (eps = 0.100000) [00:00:31] Tree #1, final logLikelihood: -154831.065232 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.148641,0.265165) (0.192759,0.278012) (0.329584,0.790900) (0.329017,1.964424) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15831/4_raxmlng_ancestral/Q15831.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15831/4_raxmlng_ancestral/Q15831.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15831/4_raxmlng_ancestral/Q15831.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15831/4_raxmlng_ancestral/Q15831.raxml.log Analysis started: 02-Jun-2021 17:52:21 / finished: 02-Jun-2021 17:52:57 Elapsed time: 35.704 seconds Consumed energy: 1.841 Wh