RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jun-2021 18:49:19 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15583/2_msa/Q15583_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15583/3_mltree/Q15583.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15583/4_raxmlng_ancestral/Q15583 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622648959 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15583/2_msa/Q15583_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 401 sites WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and sp_O46339_HTH_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_B4HIS7_B4HIS7_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_I5ANA3_I5ANA3_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4QV74_B4QV74_DROSI_7240 and tr_B3LVY3_B3LVY3_DROAN_7217 are exactly identical! WARNING: Sequences sp_O70477_PKNX1_MOUSE_10090 and tr_G3HLE6_G3HLE6_CRIGR_10029 are exactly identical! WARNING: Sequences sp_O70477_PKNX1_MOUSE_10090 and tr_Q5BJP1_Q5BJP1_RAT_10116 are exactly identical! WARNING: Sequences sp_O70477_PKNX1_MOUSE_10090 and tr_A0A1U7QC18_A0A1U7QC18_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YE40_M3YE40_MUSPF_9669 and tr_F1PIZ8_F1PIZ8_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YE40_M3YE40_MUSPF_9669 and tr_G1L4U5_G1L4U5_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YE40_M3YE40_MUSPF_9669 and tr_A0A2U3WDK8_A0A2U3WDK8_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YE40_M3YE40_MUSPF_9669 and tr_A0A2U3YZH6_A0A2U3YZH6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YE40_M3YE40_MUSPF_9669 and tr_A0A2Y9KF89_A0A2Y9KF89_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YE40_M3YE40_MUSPF_9669 and tr_A0A384DN41_A0A384DN41_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1R795_G1R795_NOMLE_61853 and tr_G1TU50_G1TU50_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1R795_G1R795_NOMLE_61853 and tr_F7D6U6_F7D6U6_MONDO_13616 are exactly identical! WARNING: Sequences tr_G1R795_G1R795_NOMLE_61853 and tr_G3WWV9_G3WWV9_SARHA_9305 are exactly identical! WARNING: Sequences tr_B6QI96_B6QI96_TALMQ_441960 and tr_A0A093V4F7_A0A093V4F7_TALMA_1077442 are exactly identical! WARNING: Sequences tr_G3RD54_G3RD54_GORGO_9595 and tr_H2RAH8_H2RAH8_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RD54_G3RD54_GORGO_9595 and sp_P55347_PKNX1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RD54_G3RD54_GORGO_9595 and tr_A0A096NIR5_A0A096NIR5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RD54_G3RD54_GORGO_9595 and tr_A0A2K5M4J9_A0A2K5M4J9_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RD54_G3RD54_GORGO_9595 and tr_A0A2K6CKF2_A0A2K6CKF2_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3RD54_G3RD54_GORGO_9595 and tr_A0A2K5ZDI6_A0A2K5ZDI6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2J8VJK1_A0A2J8VJK1_PONAB_9601 and tr_H2QKA4_H2QKA4_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2J8VJK1_A0A2J8VJK1_PONAB_9601 and sp_Q9GZN2_TGIF2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2J8VJK1_A0A2J8VJK1_PONAB_9601 and tr_A0A2R9B1M5_A0A2R9B1M5_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2NFS2_H2NFS2_PONAB_9601 and tr_F6Z692_F6Z692_CALJA_9483 are exactly identical! WARNING: Sequences tr_H2NFS2_H2NFS2_PONAB_9601 and tr_A0A2K5MSF1_A0A2K5MSF1_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2NFS2_H2NFS2_PONAB_9601 and tr_A0A2K6ADK1_A0A2K6ADK1_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A179UTN7_A0A179UTN7_BLAGS_559298 and tr_C5GNZ4_C5GNZ4_AJEDR_559297 are exactly identical! WARNING: Sequences tr_E2R867_E2R867_CANLF_9615 and tr_K7BFH4_K7BFH4_PANTR_9598 are exactly identical! WARNING: Sequences tr_E2R867_E2R867_CANLF_9615 and tr_F6ZFA5_F6ZFA5_HORSE_9796 are exactly identical! WARNING: Sequences tr_E2R867_E2R867_CANLF_9615 and tr_W5PP21_W5PP21_SHEEP_9940 are exactly identical! WARNING: Sequences tr_E2R867_E2R867_CANLF_9615 and tr_H0WLI8_H0WLI8_OTOGA_30611 are exactly identical! WARNING: Sequences tr_E2R867_E2R867_CANLF_9615 and sp_Q96KN3_PKNX2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_E2R867_E2R867_CANLF_9615 and tr_G7NCW8_G7NCW8_MACMU_9544 are exactly identical! WARNING: Sequences tr_E2R867_E2R867_CANLF_9615 and tr_G3TWD4_G3TWD4_LOXAF_9785 are exactly identical! WARNING: Sequences tr_E2R867_E2R867_CANLF_9615 and tr_D2HNK9_D2HNK9_AILME_9646 are exactly identical! WARNING: Sequences tr_E2R867_E2R867_CANLF_9615 and tr_G7PPL8_G7PPL8_MACFA_9541 are exactly identical! WARNING: Sequences tr_E2R867_E2R867_CANLF_9615 and tr_E1BCL1_E1BCL1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_E2R867_E2R867_CANLF_9615 and tr_L5KG81_L5KG81_PTEAL_9402 are exactly identical! WARNING: Sequences tr_E2R867_E2R867_CANLF_9615 and tr_A0A1U7UB01_A0A1U7UB01_TARSY_1868482 are exactly identical! WARNING: Sequences tr_E2R867_E2R867_CANLF_9615 and tr_A0A2K6CLS7_A0A2K6CLS7_MACNE_9545 are exactly identical! WARNING: Sequences tr_E2R867_E2R867_CANLF_9615 and tr_A0A2R9CF88_A0A2R9CF88_PANPA_9597 are exactly identical! WARNING: Sequences tr_E2R867_E2R867_CANLF_9615 and tr_A0A2Y9KHC6_A0A2Y9KHC6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_E2R867_E2R867_CANLF_9615 and tr_A0A2Y9ER97_A0A2Y9ER97_PHYCD_9755 are exactly identical! WARNING: Sequences tr_E2R867_E2R867_CANLF_9615 and tr_A0A384BWF4_A0A384BWF4_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3RTT0_A0A2I3RTT0_PANTR_9598 and tr_A0A2R9ABC4_A0A2R9ABC4_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q5IS58_TGIF1_PANTR_9598 and tr_A0A2R9AXU2_A0A2R9AXU2_PANPA_9597 are exactly identical! WARNING: Sequences tr_F9FRS7_F9FRS7_FUSOF_660025 and tr_A0A0D2XZJ5_A0A0D2XZJ5_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9FRS7_F9FRS7_FUSOF_660025 and tr_N4USS9_N4USS9_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9FRS7_F9FRS7_FUSOF_660025 and tr_A0A2H3GZ65_A0A2H3GZ65_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F9FRS7_F9FRS7_FUSOF_660025 and tr_A0A2K0WI06_A0A2K0WI06_GIBNY_42673 are exactly identical! WARNING: Sequences tr_F9FRS7_F9FRS7_FUSOF_660025 and tr_A0A365MXE5_A0A365MXE5_GIBIN_948311 are exactly identical! WARNING: Sequences tr_E9EU39_E9EU39_METRA_655844 and tr_E9E569_E9E569_METAQ_655827 are exactly identical! WARNING: Sequences tr_E9EU39_E9EU39_METRA_655844 and tr_A0A0D9NRV1_A0A0D9NRV1_METAN_1291518 are exactly identical! WARNING: Sequences tr_C6HQZ8_C6HQZ8_AJECH_544712 and tr_F0ULS9_F0ULS9_AJEC8_544711 are exactly identical! WARNING: Sequences tr_I3M3T9_I3M3T9_ICTTR_43179 and tr_A0A1S3EM44_A0A1S3EM44_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A2QJG0_A2QJG0_ASPNC_425011 and tr_A0A1L9UGV0_A0A1L9UGV0_9EURO_767769 are exactly identical! WARNING: Sequences tr_A2QJG0_A2QJG0_ASPNC_425011 and tr_A0A1R3RUS2_A0A1R3RUS2_ASPC5_602072 are exactly identical! WARNING: Sequences tr_A2QJG0_A2QJG0_ASPNC_425011 and tr_A0A319AWR2_A0A319AWR2_9EURO_1450533 are exactly identical! WARNING: Sequences tr_A2QJG0_A2QJG0_ASPNC_425011 and tr_A0A319FBC5_A0A319FBC5_9EURO_1448318 are exactly identical! WARNING: Sequences tr_F7GYI0_F7GYI0_MACMU_9544 and tr_G7PGG9_G7PGG9_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7GYI0_F7GYI0_MACMU_9544 and tr_A0A096NUK5_A0A096NUK5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7GYI0_F7GYI0_MACMU_9544 and tr_A0A0D9RCA7_A0A0D9RCA7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7GYI0_F7GYI0_MACMU_9544 and tr_A0A2K5KZ29_A0A2K5KZ29_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7GYI0_F7GYI0_MACMU_9544 and tr_A0A2K6BLE3_A0A2K6BLE3_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GYI0_F7GYI0_MACMU_9544 and tr_A0A2K5YSL8_A0A2K5YSL8_MANLE_9568 are exactly identical! WARNING: Sequences tr_G7XXN8_G7XXN8_ASPKW_1033177 and tr_A0A100IBH0_A0A100IBH0_ASPNG_5061 are exactly identical! WARNING: Sequences tr_G7XXN8_G7XXN8_ASPKW_1033177 and tr_A0A1L9MVC1_A0A1L9MVC1_ASPTU_767770 are exactly identical! WARNING: Sequences tr_G7XXN8_G7XXN8_ASPKW_1033177 and tr_A0A317VC38_A0A317VC38_9EURO_1448314 are exactly identical! WARNING: Sequences tr_K7GI85_K7GI85_PELSI_13735 and tr_H0Z5T8_H0Z5T8_TAEGU_59729 are exactly identical! WARNING: Sequences tr_K7GI85_K7GI85_PELSI_13735 and tr_U3IP03_U3IP03_ANAPL_8839 are exactly identical! WARNING: Sequences tr_K7GI85_K7GI85_PELSI_13735 and tr_A0A2I0M5J9_A0A2I0M5J9_COLLI_8932 are exactly identical! WARNING: Sequences tr_K7GI85_K7GI85_PELSI_13735 and tr_A0A218UAL7_A0A218UAL7_9PASE_299123 are exactly identical! WARNING: Sequences tr_K7GI85_K7GI85_PELSI_13735 and tr_A0A226MTP3_A0A226MTP3_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A2R8MN04_A0A2R8MN04_CALJA_9483 and tr_F7IBT3_F7IBT3_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A0Q9WPM1_A0A0Q9WPM1_DROVI_7244 and tr_B4K5K2_B4K5K2_DROMO_7230 are exactly identical! WARNING: Sequences tr_D2H465_D2H465_AILME_9646 and tr_A0A384CPF5_A0A384CPF5_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q2HJ84_PKNX1_BOVIN_9913 and tr_A0A2Y9LGK2_A0A2Y9LGK2_DELLE_9749 are exactly identical! WARNING: Sequences tr_L2GAL3_L2GAL3_COLFN_1213859 and tr_T0JUM8_T0JUM8_COLGC_1237896 are exactly identical! WARNING: Sequences tr_A0A017SSE7_A0A017SSE7_9EURO_1388766 and tr_A0A1L9VYS4_A0A1L9VYS4_ASPGL_1160497 are exactly identical! WARNING: Sequences tr_A0A015JLZ1_A0A015JLZ1_9GLOM_1432141 and tr_A0A2H5UG19_A0A2H5UG19_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A2I3MF20_A0A2I3MF20_PAPAN_9555 and tr_A0A2K6AJE6_A0A2K6AJE6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A0A1ND70_A0A0A1ND70_9FUNG_58291 and tr_A0A0A1P608_A0A0A1P608_9FUNG_58291 are exactly identical! WARNING: Sequences tr_A0A0A1ND70_A0A0A1ND70_9FUNG_58291 and tr_A0A367KBW4_A0A367KBW4_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A091EN84_A0A091EN84_CORBR_85066 and tr_A0A091JD51_A0A091JD51_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A091EN84_A0A091EN84_CORBR_85066 and tr_A0A093PPW9_A0A093PPW9_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EN84_A0A091EN84_CORBR_85066 and tr_A0A091VX50_A0A091VX50_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091EN84_A0A091EN84_CORBR_85066 and tr_A0A087R991_A0A087R991_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091EN84_A0A091EN84_CORBR_85066 and tr_A0A091X4S1_A0A091X4S1_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091EN84_A0A091EN84_CORBR_85066 and tr_A0A091G4P3_A0A091G4P3_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091EN84_A0A091EN84_CORBR_85066 and tr_A0A0A0AYZ9_A0A0A0AYZ9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091EN84_A0A091EN84_CORBR_85066 and tr_A0A093GX73_A0A093GX73_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A0V0ZWZ8_A0A0V0ZWZ8_9BILA_990121 and tr_A0A0V0YHZ3_A0A0V0YHZ3_TRIPS_6337 are exactly identical! WARNING: Sequences tr_A0A0V0ZWZ8_A0A0V0ZWZ8_9BILA_990121 and tr_A0A0V1MS97_A0A0V1MS97_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A101MM27_A0A101MM27_9EURO_48697 and tr_A0A1V6NLT7_A0A1V6NLT7_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A166Y3G0_A0A166Y3G0_9PEZI_708197 and tr_A0A161VYR8_A0A161VYR8_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_A0A195FW59_A0A195FW59_9HYME_34720 and tr_A0A195D4G5_A0A195D4G5_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A1S3MBU2_A0A1S3MBU2_SALSA_8030 and tr_A0A060WFP9_A0A060WFP9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MQB6_A0A1S3MQB6_SALSA_8030 and tr_B5X4G6_B5X4G6_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3RLH2_A0A1S3RLH2_SALSA_8030 and tr_A0A060VU39_A0A060VU39_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1L9X6X7_A0A1L9X6X7_ASPAC_690307 and tr_A0A2V5HH56_A0A2V5HH56_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A2D0R5C6_A0A2D0R5C6_ICTPU_7998 and tr_A0A2D0R6Y0_A0A2D0R6Y0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0R5C6_A0A2D0R5C6_ICTPU_7998 and tr_W5UGR2_W5UGR2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4CLM0_A0A2U4CLM0_TURTR_9739 and tr_A0A2Y9PYG7_A0A2Y9PYG7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2Y9T5X2_A0A2Y9T5X2_PHYCD_9755 and tr_A0A384B0S0_A0A384B0S0_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 107 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15583/4_raxmlng_ancestral/Q15583.raxml.reduced.phy Alignment comprises 1 partitions and 401 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 401 Gaps: 58.08 % Invariant sites: 0.25 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15583/4_raxmlng_ancestral/Q15583.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15583/3_mltree/Q15583.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 101 / 8080 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -191073.294120 [00:00:00 -191073.294120] Initial branch length optimization [00:00:01 -110251.478293] Model parameter optimization (eps = 0.100000) [00:00:35] Tree #1, final logLikelihood: -109912.370081 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.063505,0.058550) (0.062720,0.099955) (0.247464,0.523185) (0.626312,1.373986) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15583/4_raxmlng_ancestral/Q15583.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15583/4_raxmlng_ancestral/Q15583.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15583/4_raxmlng_ancestral/Q15583.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q15583/4_raxmlng_ancestral/Q15583.raxml.log Analysis started: 02-Jun-2021 18:49:19 / finished: 02-Jun-2021 18:49:58 Elapsed time: 38.963 seconds Consumed energy: 3.001 Wh