RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 05-Jul-2021 00:53:39 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q15043/2_msa/Q15043_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q15043/3_mltree/Q15043 --seed 2 --threads 2 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q15043/2_msa/Q15043_trimmed_msa.fasta
[00:00:00] Loaded alignment with 995 taxa and 102 sites

WARNING: Sequences tr_B4Q9E9_B4Q9E9_DROSI_7240 and sp_Q9V3A4_CSUP_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4Q9E9_B4Q9E9_DROSI_7240 and tr_B4I5Q0_B4I5Q0_DROSE_7238 are exactly identical!
WARNING: Sequences tr_B4QM41_B4QM41_DROSI_7240 and sp_Q9VSL7_FOI_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4QM41_B4QM41_DROSI_7240 and tr_B4HJK1_B4HJK1_DROSE_7238 are exactly identical!
WARNING: Sequences tr_E9G3D9_E9G3D9_DAPPU_6669 and tr_A0A0P5XQ09_A0A0P5XQ09_9CRUS_35525 are exactly identical!
WARNING: Sequences tr_E9H733_E9H733_DAPPU_6669 and tr_A0A0P5XVA5_A0A0P5XVA5_9CRUS_35525 are exactly identical!
WARNING: Sequences sp_A0A0G2KQY6_S39AE_DANRE_7955 and tr_A0A3B5Q574_A0A3B5Q574_XIPMA_8083 are exactly identical!
WARNING: Sequences sp_A0A0G2KQY6_S39AE_DANRE_7955 and tr_I3K9C6_I3K9C6_ORENI_8128 are exactly identical!
WARNING: Sequences sp_A0A0G2KQY6_S39AE_DANRE_7955 and tr_A0A087XLN7_A0A087XLN7_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A2R8Q6G1_A0A2R8Q6G1_DANRE_7955 and tr_F8W5D4_F8W5D4_DANRE_7955 are exactly identical!
WARNING: Sequences tr_A0A1D5P3D2_A0A1D5P3D2_CHICK_9031 and tr_H9H0Q2_H9H0Q2_MELGA_9103 are exactly identical!
WARNING: Sequences tr_A0A1D5P3D2_A0A1D5P3D2_CHICK_9031 and tr_H0ZXT4_H0ZXT4_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_A0A1D5P3D2_A0A1D5P3D2_CHICK_9031 and tr_U3JJC1_U3JJC1_FICAL_59894 are exactly identical!
WARNING: Sequences tr_A0A1D5P3D2_A0A1D5P3D2_CHICK_9031 and tr_U3J267_U3J267_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_A0A1D5P3D2_A0A1D5P3D2_CHICK_9031 and tr_A0A087RFE2_A0A087RFE2_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A1D5P3D2_A0A1D5P3D2_CHICK_9031 and tr_A0A093K769_A0A093K769_STRCA_441894 are exactly identical!
WARNING: Sequences tr_A0A1D5P3D2_A0A1D5P3D2_CHICK_9031 and tr_A0A1V4KHS9_A0A1V4KHS9_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A1D5P3D2_A0A1D5P3D2_CHICK_9031 and tr_A0A218UAM7_A0A218UAM7_9PASE_299123 are exactly identical!
WARNING: Sequences tr_E1BQJ5_E1BQJ5_CHICK_9031 and tr_G1N669_G1N669_MELGA_9103 are exactly identical!
WARNING: Sequences tr_E1BQJ5_E1BQJ5_CHICK_9031 and tr_G1K9Y6_G1K9Y6_ANOCA_28377 are exactly identical!
WARNING: Sequences tr_E1BQJ5_E1BQJ5_CHICK_9031 and tr_H0ZE71_H0ZE71_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_E1BQJ5_E1BQJ5_CHICK_9031 and tr_U3IP40_U3IP40_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_E1BQJ5_E1BQJ5_CHICK_9031 and tr_A0A091FBE3_A0A091FBE3_CORBR_85066 are exactly identical!
WARNING: Sequences tr_E1BQJ5_E1BQJ5_CHICK_9031 and tr_A0A091JJ57_A0A091JJ57_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_E1BQJ5_E1BQJ5_CHICK_9031 and tr_A0A093PTJ0_A0A093PTJ0_9PASS_328815 are exactly identical!
WARNING: Sequences tr_E1BQJ5_E1BQJ5_CHICK_9031 and tr_A0A091VKV6_A0A091VKV6_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_E1BQJ5_E1BQJ5_CHICK_9031 and tr_A0A087QWX9_A0A087QWX9_APTFO_9233 are exactly identical!
WARNING: Sequences tr_E1BQJ5_E1BQJ5_CHICK_9031 and tr_A0A091VG86_A0A091VG86_OPIHO_30419 are exactly identical!
WARNING: Sequences tr_E1BQJ5_E1BQJ5_CHICK_9031 and tr_A0A091FKC1_A0A091FKC1_9AVES_55661 are exactly identical!
WARNING: Sequences tr_E1BQJ5_E1BQJ5_CHICK_9031 and tr_A0A2I0MX24_A0A2I0MX24_COLLI_8932 are exactly identical!
WARNING: Sequences tr_E1BQJ5_E1BQJ5_CHICK_9031 and tr_A0A1V4J882_A0A1V4J882_PATFA_372326 are exactly identical!
WARNING: Sequences tr_E1BQJ5_E1BQJ5_CHICK_9031 and tr_A0A218VAP5_A0A218VAP5_9PASE_299123 are exactly identical!
WARNING: Sequences tr_E1BQJ5_E1BQJ5_CHICK_9031 and tr_A0A226MP11_A0A226MP11_CALSU_9009 are exactly identical!
WARNING: Sequences tr_E1BQJ5_E1BQJ5_CHICK_9031 and tr_A0A226PKJ7_A0A226PKJ7_COLVI_9014 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_G1R502_G1R502_NOMLE_61853 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_A0A2I2YX43_A0A2I2YX43_GORGO_9595 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_A0A2J8WVN7_A0A2J8WVN7_PONAB_9601 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_A0A2I3T5U1_A0A2I3T5U1_PANTR_9598 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_I3NCB8_I3NCB8_ICTTR_43179 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and sp_Q9ULF5_S39AA_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_F6WDC7_F6WDC7_MACMU_9544 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_H0ZKB9_H0ZKB9_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_D2H628_D2H628_AILME_9646 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_G7PL28_G7PL28_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_U3JP03_U3JP03_FICAL_59894 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_U3J209_U3J209_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_A0A096N0A4_A0A096N0A4_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_A0A0D9RHV8_A0A0D9RHV8_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_A0A093QAJ3_A0A093QAJ3_9PASS_328815 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_A0A218UYR6_A0A218UYR6_9PASE_299123 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_A0A226N6L2_A0A226N6L2_CALSU_9009 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_A0A2K5KJ54_A0A2K5KJ54_CERAT_9531 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_A0A2K6CA44_A0A2K6CA44_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_A0A2K5ZZQ0_A0A2K5ZZQ0_MANLE_9568 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_A0A2R9CCD6_A0A2R9CCD6_PANPA_9597 are exactly identical!
WARNING: Sequences tr_F1NP59_F1NP59_CHICK_9031 and tr_A0A384BSE7_A0A384BSE7_URSMA_29073 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_G3IDU1_G3IDU1_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_G1TES5_G1TES5_RABIT_9986 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_F1PA89_F1PA89_CANLF_9615 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_F7ALF5_F7ALF5_MONDO_13616 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_F7A8U5_F7A8U5_HORSE_9796 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_D4A517_D4A517_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_H0WM34_H0WM34_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_G3T8G8_G3T8G8_LOXAF_9785 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_G3WJ14_G3WJ14_SARHA_9305 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_U3C2X2_U3C2X2_CALJA_9483 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_A0A287A4F6_A0A287A4F6_PIG_9823 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_F1MM82_F1MM82_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_L5K0D8_L5K0D8_PTEAL_9402 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_A0A0Q3MJA8_A0A0Q3MJA8_AMAAE_12930 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_A0A091K7W8_A0A091K7W8_EGRGA_188379 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_A0A091VYU9_A0A091VYU9_NIPNI_128390 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_A0A087RCK9_A0A087RCK9_APTFO_9233 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_A0A093H2V0_A0A093H2V0_STRCA_441894 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_A0A091GL98_A0A091GL98_9AVES_55661 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_A0A0A0AU01_A0A0A0AU01_CHAVO_50402 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_A0A1S3ELZ2_A0A1S3ELZ2_DIPOR_10020 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_A0A3Q0D885_A0A3Q0D885_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_A0A2U4BNL3_A0A2U4BNL3_TURTR_9739 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_A0A2U3VFQ3_A0A2U3VFQ3_ODORO_9708 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_A0A2Y9RAU9_A0A2Y9RAU9_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_A0A2Y9MVE1_A0A2Y9MVE1_DELLE_9749 are exactly identical!
WARNING: Sequences sp_Q6P5F6_S39AA_MOUSE_10090 and tr_A0A2Y9F6A5_A0A2Y9F6A5_PHYCD_9755 are exactly identical!
WARNING: Sequences sp_Q75N73_S39AE_MOUSE_10090 and tr_F7FZM5_F7FZM5_MONDO_13616 are exactly identical!
WARNING: Sequences sp_Q75N73_S39AE_MOUSE_10090 and tr_G3X209_G3X209_SARHA_9305 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_M3XPX1_M3XPX1_MUSPF_9669 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_G1R2Y1_G1R2Y1_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_G1NWH5_G1NWH5_MYOLU_59463 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_G3H9N6_G3H9N6_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_G3R4A7_G3R4A7_GORGO_9595 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_H2NW72_H2NW72_PONAB_9601 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and sp_Q5R9M9_S39A6_PONAB_9601 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_G1SDV2_G1SDV2_RABIT_9986 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_E2RMA6_E2RMA6_CANLF_9615 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_H2QEG0_H2QEG0_PANTR_9598 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_F6UAP6_F6UAP6_MONDO_13616 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_F6W4B0_F6W4B0_HORSE_9796 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_W5P6A4_W5P6A4_SHEEP_9940 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and sp_Q4V887_S39A6_RAT_10116 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_I3M245_I3M245_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_H0WXX1_H0WXX1_OTOGA_30611 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_H0V5W0_H0V5W0_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and sp_Q13433_S39A6_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_F6ZQI3_F6ZQI3_MACMU_9544 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_G5C758_G5C758_HETGA_10181 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_G3UL87_G3UL87_LOXAF_9785 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_G3WU64_G3WU64_SARHA_9305 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_I3LTT7_I3LTT7_PIG_9823 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_D2HQD5_D2HQD5_AILME_9646 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_G7PWN6_G7PWN6_MACFA_9541 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_E1B8W8_E1B8W8_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_L5K2T2_L5K2T2_PTEAL_9402 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_M3X7N5_M3X7N5_FELCA_9685 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A096MUA8_A0A096MUA8_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A091DAV0_A0A091DAV0_FUKDA_885580 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A0D9RZ98_A0A0D9RZ98_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A1S3AQ25_A0A1S3AQ25_ERIEU_9365 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A1S3F3N6_A0A1S3F3N6_DIPOR_10020 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A3Q0DXQ4_A0A3Q0DXQ4_TARSY_1868482 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A1U7QG54_A0A1U7QG54_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A2K5MXG4_A0A2K5MXG4_CERAT_9531 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A2K6CGA2_A0A2K6CGA2_MACNE_9545 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A2R9A211_A0A2R9A211_PANPA_9597 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A2U3W879_A0A2U3W879_ODORO_9708 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A2U3YDJ3_A0A2U3YDJ3_LEPWE_9713 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A2Y9DTM2_A0A2Y9DTM2_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A2Y9J0Q2_A0A2Y9J0Q2_ENHLU_391180 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A2Y9PBT2_A0A2Y9PBT2_DELLE_9749 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A2Y9SJW2_A0A2Y9SJW2_PHYCD_9755 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A384C522_A0A384C522_URSMA_29073 are exactly identical!
WARNING: Sequences sp_Q8C145_S39A6_MOUSE_10090 and tr_A0A383YWT9_A0A383YWT9_BALAS_310752 are exactly identical!
WARNING: Sequences sp_Q91W10_S39A8_MOUSE_10090 and tr_A0A2I3HST6_A0A2I3HST6_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_Q91W10_S39A8_MOUSE_10090 and tr_G3IM89_G3IM89_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_Q91W10_S39A8_MOUSE_10090 and tr_G3QK74_G3QK74_GORGO_9595 are exactly identical!
WARNING: Sequences sp_Q91W10_S39A8_MOUSE_10090 and tr_H2R2F5_H2R2F5_PANTR_9598 are exactly identical!
WARNING: Sequences sp_Q91W10_S39A8_MOUSE_10090 and tr_H0V1W7_H0V1W7_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_Q91W10_S39A8_MOUSE_10090 and sp_Q9C0K1_S39A8_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_Q91W10_S39A8_MOUSE_10090 and tr_F7HKH5_F7HKH5_MACMU_9544 are exactly identical!
WARNING: Sequences sp_Q91W10_S39A8_MOUSE_10090 and tr_G7P603_G7P603_MACFA_9541 are exactly identical!
WARNING: Sequences sp_Q91W10_S39A8_MOUSE_10090 and tr_A0A096MX81_A0A096MX81_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_Q91W10_S39A8_MOUSE_10090 and tr_A0A091DSV4_A0A091DSV4_FUKDA_885580 are exactly identical!
WARNING: Sequences sp_Q91W10_S39A8_MOUSE_10090 and tr_A0A0D9QVM1_A0A0D9QVM1_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_Q91W10_S39A8_MOUSE_10090 and tr_A0A3Q0DA10_A0A3Q0DA10_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q91W10_S39A8_MOUSE_10090 and tr_A0A2K5N828_A0A2K5N828_CERAT_9531 are exactly identical!
WARNING: Sequences sp_Q91W10_S39A8_MOUSE_10090 and tr_A0A2K6B2Q1_A0A2K6B2Q1_MACNE_9545 are exactly identical!
WARNING: Sequences sp_Q91W10_S39A8_MOUSE_10090 and tr_A0A2K5XP66_A0A2K5XP66_MANLE_9568 are exactly identical!
WARNING: Sequences sp_Q91W10_S39A8_MOUSE_10090 and tr_A0A2R9B8F3_A0A2R9B8F3_PANPA_9597 are exactly identical!
WARNING: Sequences tr_M3XQE6_M3XQE6_MUSPF_9669 and tr_F6QZE6_F6QZE6_HORSE_9796 are exactly identical!
WARNING: Sequences tr_M3XQE6_M3XQE6_MUSPF_9669 and tr_A0A2Y9L5D6_A0A2Y9L5D6_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3XT52_M3XT52_MUSPF_9669 and tr_F6SL61_F6SL61_HORSE_9796 are exactly identical!
WARNING: Sequences tr_M3XT52_M3XT52_MUSPF_9669 and tr_A0A2U3WGB4_A0A2U3WGB4_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3XT52_M3XT52_MUSPF_9669 and tr_A0A2Y9K3R1_A0A2Y9K3R1_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3XX11_M3XX11_MUSPF_9669 and tr_G3GUY2_G3GUY2_CRIGR_10029 are exactly identical!
WARNING: Sequences tr_M3XX11_M3XX11_MUSPF_9669 and tr_G1SVM9_G1SVM9_RABIT_9986 are exactly identical!
WARNING: Sequences tr_M3XX11_M3XX11_MUSPF_9669 and tr_F1PMK4_F1PMK4_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3XX11_M3XX11_MUSPF_9669 and tr_D3ZZM0_D3ZZM0_RAT_10116 are exactly identical!
WARNING: Sequences tr_M3XX11_M3XX11_MUSPF_9669 and tr_G5B9Q5_G5B9Q5_HETGA_10181 are exactly identical!
WARNING: Sequences tr_M3XX11_M3XX11_MUSPF_9669 and tr_G1L8W1_G1L8W1_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3XX11_M3XX11_MUSPF_9669 and tr_A0A2I2V0X3_A0A2I2V0X3_FELCA_9685 are exactly identical!
WARNING: Sequences tr_M3XX11_M3XX11_MUSPF_9669 and tr_A0A091E5X0_A0A091E5X0_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_M3XX11_M3XX11_MUSPF_9669 and tr_A0A1S3A4I1_A0A1S3A4I1_ERIEU_9365 are exactly identical!
WARNING: Sequences tr_M3XX11_M3XX11_MUSPF_9669 and tr_A0A3Q0CRZ7_A0A3Q0CRZ7_MESAU_10036 are exactly identical!
WARNING: Sequences tr_M3XX11_M3XX11_MUSPF_9669 and tr_A0A2U3W2K7_A0A2U3W2K7_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3XX11_M3XX11_MUSPF_9669 and tr_A0A2U3YV62_A0A2U3YV62_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_M3XX11_M3XX11_MUSPF_9669 and tr_A0A2Y9KN71_A0A2Y9KN71_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3XX11_M3XX11_MUSPF_9669 and tr_A0A384CZQ9_A0A384CZQ9_URSMA_29073 are exactly identical!
WARNING: Sequences tr_M3Y7Y7_M3Y7Y7_MUSPF_9669 and tr_A0A286XS95_A0A286XS95_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_M3Y7Y7_M3Y7Y7_MUSPF_9669 and tr_A0A384AT01_A0A384AT01_BALAS_310752 are exactly identical!
WARNING: Sequences tr_M3YDF2_M3YDF2_MUSPF_9669 and tr_F1PPR9_F1PPR9_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3YDF2_M3YDF2_MUSPF_9669 and tr_H0WYA1_H0WYA1_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_M3YDF2_M3YDF2_MUSPF_9669 and tr_G1LQK4_G1LQK4_AILME_9646 are exactly identical!
WARNING: Sequences tr_M3YDF2_M3YDF2_MUSPF_9669 and tr_A0A2U3W1S6_A0A2U3W1S6_ODORO_9708 are exactly identical!
WARNING: Sequences tr_M3YDF2_M3YDF2_MUSPF_9669 and tr_A0A2U3YLX1_A0A2U3YLX1_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_M3YDF2_M3YDF2_MUSPF_9669 and tr_A0A2Y9KU24_A0A2Y9KU24_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3YDF2_M3YDF2_MUSPF_9669 and tr_A0A384DEP3_A0A384DEP3_URSMA_29073 are exactly identical!
WARNING: Sequences tr_A0A3B3H4G4_A0A3B3H4G4_ORYLA_8090 and tr_H2UNS0_H2UNS0_TAKRU_31033 are exactly identical!
WARNING: Sequences tr_A0A3B3H4G4_A0A3B3H4G4_ORYLA_8090 and tr_G3PMU6_G3PMU6_GASAC_69293 are exactly identical!
WARNING: Sequences tr_B4IWM5_B4IWM5_DROGR_7222 and tr_B4K038_B4K038_DROGR_7222 are exactly identical!
WARNING: Sequences tr_B4IWM5_B4IWM5_DROGR_7222 and tr_B4LEJ6_B4LEJ6_DROVI_7244 are exactly identical!
WARNING: Sequences tr_B4IWM5_B4IWM5_DROGR_7222 and tr_B4KZ51_B4KZ51_DROMO_7230 are exactly identical!
WARNING: Sequences tr_A0A2I3GVX1_A0A2I3GVX1_NOMLE_61853 and tr_A0A2I2YLD7_A0A2I2YLD7_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A2I3GVX1_A0A2I3GVX1_NOMLE_61853 and tr_H2PPS0_H2PPS0_PONAB_9601 are exactly identical!
WARNING: Sequences tr_A0A2I3GVX1_A0A2I3GVX1_NOMLE_61853 and sp_Q5RAB7_S39AE_PONAB_9601 are exactly identical!
WARNING: Sequences tr_A0A2I3GVX1_A0A2I3GVX1_NOMLE_61853 and tr_A0A2I3RHN9_A0A2I3RHN9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I3GVX1_A0A2I3GVX1_NOMLE_61853 and tr_H0X2Z1_H0X2Z1_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_A0A2I3GVX1_A0A2I3GVX1_NOMLE_61853 and sp_Q15043_S39AE_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3GVX1_A0A2I3GVX1_NOMLE_61853 and tr_A0A1D5Q778_A0A1D5Q778_MACMU_9544 are exactly identical!
WARNING: Sequences tr_A0A2I3GVX1_A0A2I3GVX1_NOMLE_61853 and tr_A0A2R8MFK4_A0A2R8MFK4_CALJA_9483 are exactly identical!
WARNING: Sequences tr_A0A2I3GVX1_A0A2I3GVX1_NOMLE_61853 and tr_A0A2I3MNE2_A0A2I3MNE2_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_A0A2I3GVX1_A0A2I3GVX1_NOMLE_61853 and tr_A0A0D9RV94_A0A0D9RV94_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A2I3GVX1_A0A2I3GVX1_NOMLE_61853 and tr_A0A2K5NFZ2_A0A2K5NFZ2_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I3GVX1_A0A2I3GVX1_NOMLE_61853 and tr_A0A2K6CZW5_A0A2K6CZW5_MACNE_9545 are exactly identical!
WARNING: Sequences tr_A0A2I3GVX1_A0A2I3GVX1_NOMLE_61853 and tr_A0A2R8Z750_A0A2R8Z750_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1R529_G1R529_NOMLE_61853 and tr_G3R2Y9_G3R2Y9_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1R529_G1R529_NOMLE_61853 and tr_A0A2J8Y2U9_A0A2J8Y2U9_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1R529_G1R529_NOMLE_61853 and sp_Q5RFD5_S39A7_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1R529_G1R529_NOMLE_61853 and tr_K7CJL9_K7CJL9_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1R529_G1R529_NOMLE_61853 and sp_Q92504_S39A7_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1R529_G1R529_NOMLE_61853 and tr_F7HA72_F7HA72_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1R529_G1R529_NOMLE_61853 and tr_G7P2S2_G7P2S2_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G1R529_G1R529_NOMLE_61853 and tr_A0A096NHG1_A0A096NHG1_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1R529_G1R529_NOMLE_61853 and tr_A0A0D9RAY7_A0A0D9RAY7_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1R529_G1R529_NOMLE_61853 and tr_A0A1U7TKY3_A0A1U7TKY3_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G1R529_G1R529_NOMLE_61853 and tr_A0A2K5L7X8_A0A2K5L7X8_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1R529_G1R529_NOMLE_61853 and tr_A0A2K6CE02_A0A2K6CE02_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1R529_G1R529_NOMLE_61853 and tr_A0A2K5XAU8_A0A2K5XAU8_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1R529_G1R529_NOMLE_61853 and tr_A0A2R8ZZI2_A0A2R8ZZI2_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1RIF0_G1RIF0_NOMLE_61853 and tr_G3RJC4_G3RJC4_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1RIF0_G1RIF0_NOMLE_61853 and tr_H2PRH0_H2PRH0_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1RIF0_G1RIF0_NOMLE_61853 and tr_H2R9M1_H2R9M1_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1RIF0_G1RIF0_NOMLE_61853 and tr_A0A2R9BKS8_A0A2R9BKS8_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1S6Y5_G1S6Y5_NOMLE_61853 and tr_G3R109_G3R109_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1S6Y5_G1S6Y5_NOMLE_61853 and tr_A0A2J8Q1N0_A0A2J8Q1N0_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1S6Y5_G1S6Y5_NOMLE_61853 and sp_Q6ZMH5_S39A5_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1S6Y5_G1S6Y5_NOMLE_61853 and tr_G7PIH1_G7PIH1_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G1S6Y5_G1S6Y5_NOMLE_61853 and tr_A0A096MPW9_A0A096MPW9_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1S6Y5_G1S6Y5_NOMLE_61853 and tr_A0A0D9QYS2_A0A0D9QYS2_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1S6Y5_G1S6Y5_NOMLE_61853 and tr_A0A2K5NDM6_A0A2K5NDM6_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1S6Y5_G1S6Y5_NOMLE_61853 and tr_A0A2K6BSA1_A0A2K6BSA1_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1S6Y5_G1S6Y5_NOMLE_61853 and tr_A0A2K6AEP0_A0A2K6AEP0_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1S6Y5_G1S6Y5_NOMLE_61853 and tr_A0A2R9CDT9_A0A2R9CDT9_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1P9G6_G1P9G6_MYOLU_59463 and tr_A0A091E3R6_A0A091E3R6_CORBR_85066 are exactly identical!
WARNING: Sequences tr_G1PIY1_G1PIY1_MYOLU_59463 and tr_G1SL93_G1SL93_RABIT_9986 are exactly identical!
WARNING: Sequences tr_G1PIY1_G1PIY1_MYOLU_59463 and tr_W5PUQ1_W5PUQ1_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_G1PIY1_G1PIY1_MYOLU_59463 and tr_F6UHS9_F6UHS9_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G1PIY1_G1PIY1_MYOLU_59463 and tr_E1BQ28_E1BQ28_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_G1PIY1_G1PIY1_MYOLU_59463 and tr_L5K6J2_L5K6J2_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_G1PIY1_G1PIY1_MYOLU_59463 and tr_A0A1S3FTV6_A0A1S3FTV6_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_G1PIY1_G1PIY1_MYOLU_59463 and tr_A0A1U7U0K7_A0A1U7U0K7_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G1PIY1_G1PIY1_MYOLU_59463 and tr_A0A2U3V3C6_A0A2U3V3C6_TURTR_9739 are exactly identical!
WARNING: Sequences tr_G1PIY1_G1PIY1_MYOLU_59463 and tr_A0A2Y9NVT9_A0A2Y9NVT9_DELLE_9749 are exactly identical!
WARNING: Sequences tr_G1PIY1_G1PIY1_MYOLU_59463 and tr_A0A2Y9FDF5_A0A2Y9FDF5_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_G1PIY1_G1PIY1_MYOLU_59463 and tr_A0A383ZD86_A0A383ZD86_BALAS_310752 are exactly identical!
WARNING: Sequences tr_G1PUZ8_G1PUZ8_MYOLU_59463 and tr_A0A2U3VW10_A0A2U3VW10_ODORO_9708 are exactly identical!
WARNING: Sequences tr_G3HQS0_G3HQS0_CRIGR_10029 and tr_A0A1U7R690_A0A1U7R690_MESAU_10036 are exactly identical!
WARNING: Sequences tr_B2WJ09_B2WJ09_PYRTR_426418 and tr_B2WLX8_B2WLX8_PYRTR_426418 are exactly identical!
WARNING: Sequences tr_B2WJ09_B2WJ09_PYRTR_426418 and tr_A0A2W1DE50_A0A2W1DE50_9PLEO_45151 are exactly identical!
WARNING: Sequences tr_G1N4K1_G1N4K1_MELGA_9103 and tr_G5APK7_G5APK7_HETGA_10181 are exactly identical!
WARNING: Sequences tr_G1N4K1_G1N4K1_MELGA_9103 and tr_A0A091DHK1_A0A091DHK1_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_G1N4K1_G1N4K1_MELGA_9103 and tr_A0A093FYM3_A0A093FYM3_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_G1N4K1_G1N4K1_MELGA_9103 and tr_A0A091I4Y6_A0A091I4Y6_CALAN_9244 are exactly identical!
WARNING: Sequences tr_G1N4K1_G1N4K1_MELGA_9103 and tr_A0A2Y9IUE7_A0A2Y9IUE7_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_G1N6D0_G1N6D0_MELGA_9103 and tr_U3J012_U3J012_ANAPL_8839 are exactly identical!
WARNING: Sequences tr_G1N6D0_G1N6D0_MELGA_9103 and tr_A0A2I0MQJ0_A0A2I0MQJ0_COLLI_8932 are exactly identical!
WARNING: Sequences tr_G1N6D0_G1N6D0_MELGA_9103 and tr_A0A1V4KBH1_A0A1V4KBH1_PATFA_372326 are exactly identical!
WARNING: Sequences tr_B5DPX3_B5DPX3_DROPS_46245 and tr_A0A1W4UTS5_A0A1W4UTS5_DROFC_30025 are exactly identical!
WARNING: Sequences tr_Q29N95_Q29N95_DROPS_46245 and tr_B4G828_B4G828_DROPE_7234 are exactly identical!
WARNING: Sequences tr_Q22395_Q22395_CAEEL_6239 and tr_A0A1I7UAX2_A0A1I7UAX2_9PELO_1561998 are exactly identical!
WARNING: Sequences tr_F6X456_F6X456_ORNAN_9258 and tr_A0A2I0LIU1_A0A2I0LIU1_COLLI_8932 are exactly identical!
WARNING: Sequences tr_F7CII5_F7CII5_MONDO_13616 and tr_F7FJW7_F7FJW7_MONDO_13616 are exactly identical!
WARNING: Sequences tr_F7DLB3_F7DLB3_MONDO_13616 and tr_G3VI77_G3VI77_SARHA_9305 are exactly identical!
WARNING: Sequences tr_F6TXV7_F6TXV7_HORSE_9796 and tr_G3TGZ5_G3TGZ5_LOXAF_9785 are exactly identical!
WARNING: Sequences tr_F6TXV7_F6TXV7_HORSE_9796 and tr_A0A1S3GM01_A0A1S3GM01_DIPOR_10020 are exactly identical!
WARNING: Sequences tr_F6TXV7_F6TXV7_HORSE_9796 and tr_A0A2U4BFA2_A0A2U4BFA2_TURTR_9739 are exactly identical!
WARNING: Sequences tr_F6TXV7_F6TXV7_HORSE_9796 and tr_A0A2Y9DW08_A0A2Y9DW08_TRIMA_127582 are exactly identical!
WARNING: Sequences tr_F6TXV7_F6TXV7_HORSE_9796 and tr_A0A2Y9MC25_A0A2Y9MC25_DELLE_9749 are exactly identical!
WARNING: Sequences tr_F6TXV7_F6TXV7_HORSE_9796 and tr_A0A2Y9FLS2_A0A2Y9FLS2_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_F6TXV7_F6TXV7_HORSE_9796 and tr_A0A383YYJ7_A0A383YYJ7_BALAS_310752 are exactly identical!
WARNING: Sequences tr_W5PKV0_W5PKV0_SHEEP_9940 and sp_A5D7L5_S39AE_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_W5PKV0_W5PKV0_SHEEP_9940 and tr_L5L6I7_L5L6I7_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_A0A088AC68_A0A088AC68_APIME_7460 and tr_A0A2A3EMP4_A0A2A3EMP4_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A158NA85_A0A158NA85_ATTCE_12957 and tr_A0A195BKP4_A0A195BKP4_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A158NA85_A0A158NA85_ATTCE_12957 and tr_A0A195FRA8_A0A195FRA8_9HYME_34720 are exactly identical!
WARNING: Sequences tr_A0A158NU01_A0A158NU01_ATTCE_12957 and tr_A0A151WNG3_A0A151WNG3_9HYME_64791 are exactly identical!
WARNING: Sequences tr_A0A158NU01_A0A158NU01_ATTCE_12957 and tr_A0A195DJG1_A0A195DJG1_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A158NU01_A0A158NU01_ATTCE_12957 and tr_A0A151I5J1_A0A151I5J1_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A158NU01_A0A158NU01_ATTCE_12957 and tr_A0A195C9I3_A0A195C9I3_9HYME_456900 are exactly identical!
WARNING: Sequences tr_K7H136_K7H136_CAEJA_281687 and tr_E3MCG4_E3MCG4_CAERE_31234 are exactly identical!
WARNING: Sequences tr_K7H136_K7H136_CAEJA_281687 and sp_A8X482_ZPT72_CAEBR_6238 are exactly identical!
WARNING: Sequences tr_K7H136_K7H136_CAEJA_281687 and tr_A0A1I7U4N8_A0A1I7U4N8_9PELO_1561998 are exactly identical!
WARNING: Sequences tr_K7H136_K7H136_CAEJA_281687 and tr_A0A261CN49_A0A261CN49_9PELO_1503980 are exactly identical!
WARNING: Sequences tr_K7H136_K7H136_CAEJA_281687 and tr_A0A2G5T018_A0A2G5T018_9PELO_1611254 are exactly identical!
WARNING: Sequences tr_K1Q820_K1Q820_CRAGI_29159 and tr_K1RJB3_K1RJB3_CRAGI_29159 are exactly identical!
WARNING: Sequences tr_J3MTP4_J3MTP4_ORYBR_4533 and tr_A0A0E0EMB5_A0A0E0EMB5_9ORYZ_40149 are exactly identical!
WARNING: Sequences tr_J3MTP4_J3MTP4_ORYBR_4533 and tr_A0A0E0QK41_A0A0E0QK41_ORYRU_4529 are exactly identical!
WARNING: Sequences tr_J3MTP4_J3MTP4_ORYBR_4533 and tr_A0A0D3H174_A0A0D3H174_9ORYZ_65489 are exactly identical!
WARNING: Sequences tr_J3MTP4_J3MTP4_ORYBR_4533 and tr_A0A0E0AWE9_A0A0E0AWE9_9ORYZ_40148 are exactly identical!
WARNING: Sequences tr_J3MTP4_J3MTP4_ORYBR_4533 and tr_A0A0D9X8Q7_A0A0D9X8Q7_9ORYZ_77586 are exactly identical!
WARNING: Sequences tr_A0A0E0ID48_A0A0E0ID48_ORYNI_4536 and tr_B8BBJ5_B8BBJ5_ORYSI_39946 are exactly identical!
WARNING: Sequences tr_D0MQS0_D0MQS0_PHYIT_403677 and tr_D0P3N3_D0P3N3_PHYIT_403677 are exactly identical!
WARNING: Sequences tr_A0A0K0J280_A0A0K0J280_BRUMA_6279 and tr_A0A0N4T4X3_A0A0N4T4X3_BRUPA_6280 are exactly identical!
WARNING: Sequences tr_A0A0K0J680_A0A0K0J680_BRUMA_6279 and tr_A0A0N4T8A6_A0A0N4T8A6_BRUPA_6280 are exactly identical!
WARNING: Sequences tr_A0A0K0JPY3_A0A0K0JPY3_BRUMA_6279 and tr_A0A0N4SZF3_A0A0N4SZF3_BRUPA_6280 are exactly identical!
WARNING: Sequences tr_A0A158PWI4_A0A158PWI4_BRUMA_6279 and tr_A0A0N4TU84_A0A0N4TU84_BRUPA_6280 are exactly identical!
WARNING: Sequences tr_F7GXH0_F7GXH0_MACMU_9544 and tr_G7PEH0_G7PEH0_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7GXH0_F7GXH0_MACMU_9544 and tr_A0A096P3N0_A0A096P3N0_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_F7GXH0_F7GXH0_MACMU_9544 and tr_A0A2K6DS42_A0A2K6DS42_MACNE_9545 are exactly identical!
WARNING: Sequences tr_E5S814_E5S814_TRISP_6334 and tr_A0A0V0SEX1_A0A0V0SEX1_9BILA_6336 are exactly identical!
WARNING: Sequences tr_E5S814_E5S814_TRISP_6334 and tr_A0A0V1D9B2_A0A0V1D9B2_TRIBR_45882 are exactly identical!
WARNING: Sequences tr_E5S814_E5S814_TRISP_6334 and tr_A0A0V0X0M6_A0A0V0X0M6_9BILA_92179 are exactly identical!
WARNING: Sequences tr_E5S814_E5S814_TRISP_6334 and tr_A0A0V0VX55_A0A0V0VX55_9BILA_181606 are exactly identical!
WARNING: Sequences tr_E5S814_E5S814_TRISP_6334 and tr_A0A0V1L744_A0A0V1L744_9BILA_6335 are exactly identical!
WARNING: Sequences tr_E5S814_E5S814_TRISP_6334 and tr_A0A0V1A0T0_A0A0V1A0T0_9BILA_990121 are exactly identical!
WARNING: Sequences tr_E5S814_E5S814_TRISP_6334 and tr_A0A0V1PGR2_A0A0V1PGR2_9BILA_92180 are exactly identical!
WARNING: Sequences tr_Q7Q2X7_Q7Q2X7_ANOGA_7165 and tr_Q7QLH2_Q7QLH2_ANOGA_7165 are exactly identical!
WARNING: Sequences tr_W4Y6X2_W4Y6X2_STRPU_7668 and tr_W4Y9T4_W4Y9T4_STRPU_7668 are exactly identical!
WARNING: Sequences tr_H0YZF8_H0YZF8_TAEGU_59729 and tr_U3K093_U3K093_FICAL_59894 are exactly identical!
WARNING: Sequences tr_F2UKK4_F2UKK4_SALR5_946362 and tr_F2UL31_F2UL31_SALR5_946362 are exactly identical!
WARNING: Sequences tr_A0A1B8XWR3_A0A1B8XWR3_XENTR_8364 and tr_F6U687_F6U687_XENTR_8364 are exactly identical!
WARNING: Sequences tr_F7DCB2_F7DCB2_XENTR_8364 and tr_A0A1L8FS10_A0A1L8FS10_XENLA_8355 are exactly identical!
WARNING: Sequences tr_A8XIW1_A8XIW1_CAEBR_6238 and tr_A0A2G5UBV9_A0A2G5UBV9_9PELO_1611254 are exactly identical!
WARNING: Sequences tr_A8Y4G3_A8Y4G3_CAEBR_6238 and tr_A0A2G5TH80_A0A2G5TH80_9PELO_1611254 are exactly identical!
WARNING: Sequences tr_Q16H51_Q16H51_AEDAE_7159 and tr_Q16ZM6_Q16ZM6_AEDAE_7159 are exactly identical!
WARNING: Sequences tr_B3RLE1_B3RLE1_TRIAD_10228 and tr_A0A369S4E7_A0A369S4E7_9METZ_287889 are exactly identical!
WARNING: Sequences tr_B3RNS4_B3RNS4_TRIAD_10228 and tr_A0A369S907_A0A369S907_9METZ_287889 are exactly identical!
WARNING: Sequences tr_U3JY87_U3JY87_FICAL_59894 and tr_A0A218UF25_A0A218UF25_9PASE_299123 are exactly identical!
WARNING: Sequences tr_W2PC75_W2PC75_PHYPN_761204 and tr_A0A0W8C150_A0A0W8C150_PHYNI_4790 are exactly identical!
WARNING: Sequences tr_W2PC75_W2PC75_PHYPN_761204 and tr_W2LTN4_W2LTN4_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_A0A044TGY9_A0A044TGY9_ONCVO_6282 and tr_A0A183I1S6_A0A183I1S6_9BILA_387005 are exactly identical!
WARNING: Sequences tr_A0A044TGY9_A0A044TGY9_ONCVO_6282 and tr_A0A182EAY4_A0A182EAY4_ONCOC_42157 are exactly identical!
WARNING: Sequences tr_A0A016UHN5_A0A016UHN5_9BILA_53326 and tr_A0A016UJ45_A0A016UJ45_9BILA_53326 are exactly identical!
WARNING: Sequences tr_V4UG95_V4UG95_9ROSI_85681 and tr_A0A2H5PHI5_A0A2H5PHI5_CITUN_55188 are exactly identical!
WARNING: Sequences tr_A0A0R3X2S9_A0A0R3X2S9_HYDTA_6205 and tr_A0A0R3W8Z8_A0A0R3W8Z8_TAEAS_60517 are exactly identical!
WARNING: Sequences tr_A0A151NA92_A0A151NA92_ALLMI_8496 and tr_A0A1U7SAV1_A0A1U7SAV1_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151NCS4_A0A151NCS4_ALLMI_8496 and tr_A0A3Q0GCE3_A0A3Q0GCE3_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A151NMS6_A0A151NMS6_ALLMI_8496 and tr_A0A1U7S9T0_A0A1U7S9T0_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A194QMC1_A0A194QMC1_PAPMA_76193 and tr_A0A194PRI5_A0A194PRI5_PAPXU_66420 are exactly identical!
WARNING: Sequences tr_A0A093PUK4_A0A093PUK4_9PASS_328815 and tr_A0A091FRV2_A0A091FRV2_9AVES_55661 are exactly identical!
WARNING: Sequences tr_A0A091V3E2_A0A091V3E2_NIPNI_128390 and tr_A0A087QV90_A0A087QV90_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A091V3E2_A0A091V3E2_NIPNI_128390 and tr_A0A091HUN8_A0A091HUN8_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A093ICE7_A0A093ICE7_STRCA_441894 and tr_A0A099Z7Y6_A0A099Z7Y6_TINGU_94827 are exactly identical!
WARNING: Sequences tr_A0A2I0M902_A0A2I0M902_COLLI_8932 and tr_A0A1V4JTY8_A0A1V4JTY8_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A2I0MIC6_A0A2I0MIC6_COLLI_8932 and tr_A0A1V4K6X8_A0A1V4K6X8_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A0V1MMV5_A0A0V1MMV5_9BILA_268474 and tr_A0A0V1HTG9_A0A0V1HTG9_9BILA_268475 are exactly identical!
WARNING: Sequences tr_A0A151X7K7_A0A151X7K7_9HYME_64791 and tr_A0A195DLZ8_A0A195DLZ8_9HYME_471704 are exactly identical!
WARNING: Sequences tr_A0A163JRV5_A0A163JRV5_ABSGL_4829 and tr_A0A1X2IR36_A0A1X2IR36_9FUNG_90262 are exactly identical!
WARNING: Sequences tr_A0A1S3A0K8_A0A1S3A0K8_ERIEU_9365 and tr_A0A2U3V7Z4_A0A2U3V7Z4_TURTR_9739 are exactly identical!
WARNING: Sequences tr_A0A1S3A0K8_A0A1S3A0K8_ERIEU_9365 and tr_A0A2Y9NWH9_A0A2Y9NWH9_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A1S3A0K8_A0A1S3A0K8_ERIEU_9365 and tr_A0A2Y9ERZ5_A0A2Y9ERZ5_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A1S3A0K8_A0A1S3A0K8_ERIEU_9365 and tr_A0A384CA06_A0A384CA06_URSMA_29073 are exactly identical!
WARNING: Sequences tr_A0A1S3A0K8_A0A1S3A0K8_ERIEU_9365 and tr_A0A384AHZ6_A0A384AHZ6_BALAS_310752 are exactly identical!
WARNING: Sequences tr_A0A1S4BEJ3_A0A1S4BEJ3_TOBAC_4097 and tr_A0A1U7XC61_A0A1U7XC61_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S3K965_A0A1S3K965_LINUN_7574 and tr_A0A1S3KCK7_A0A1S3KCK7_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3LUJ5_A0A1S3LUJ5_SALSA_8030 and tr_A0A060XNR4_A0A060XNR4_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1S3Q2A3_A0A1S3Q2A3_SALSA_8030 and tr_A0A1S3Q3R1_A0A1S3Q3R1_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1S3Q2A3_A0A1S3Q2A3_SALSA_8030 and tr_A0A1S3QVZ0_A0A1S3QVZ0_SALSA_8030 are exactly identical!
WARNING: Sequences tr_A0A1D1UYB3_A0A1D1UYB3_RAMVA_947166 and tr_A0A1D1V737_A0A1D1V737_RAMVA_947166 are exactly identical!
WARNING: Sequences tr_A0A1R1X062_A0A1R1X062_9FUNG_133412 and tr_A0A1R1XN01_A0A1R1XN01_9FUNG_133412 are exactly identical!
WARNING: Sequences tr_A0A1U7R7X6_A0A1U7R7X6_MESAU_10036 and tr_A0A3Q0CBF5_A0A3Q0CBF5_MESAU_10036 are exactly identical!
WARNING: Sequences tr_A0A2A2JPU7_A0A2A2JPU7_9BILA_2018661 and tr_A0A2A2KAF3_A0A2A2KAF3_9BILA_2018661 are exactly identical!
WARNING: Sequences tr_A0A2D0QNR5_A0A2D0QNR5_ICTPU_7998 and tr_A0A2D0QR47_A0A2D0QR47_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0R477_A0A2D0R477_ICTPU_7998 and tr_A0A2D0R498_A0A2D0R498_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0R477_A0A2D0R477_ICTPU_7998 and tr_A0A2D0R5R9_A0A2D0R5R9_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0R477_A0A2D0R477_ICTPU_7998 and tr_A0A2D0R5S9_A0A2D0R5S9_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0R477_A0A2D0R477_ICTPU_7998 and tr_A0A2D0R6G6_A0A2D0R6G6_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A1U8GMT9_A0A1U8GMT9_CAPAN_4072 and tr_A0A2G3CF52_A0A2G3CF52_CAPCH_80379 are exactly identical!
WARNING: Duplicate sequences found: 346

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q15043/3_mltree/Q15043.raxml.reduced.phy

Alignment comprises 1 partitions and 102 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 102 / 102
Gaps: 2.28 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q15043/3_mltree/Q15043.raxml.rba

Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 995 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 102 / 8160
[00:00:00] Data distribution: max. searches per worker: 10

Starting ML tree search with 20 distinct starting trees

[00:00:00 -147864.413337] Initial branch length optimization
[00:00:02 -119497.716142] Model parameter optimization (eps = 10.000000)
[00:00:33 -118563.594934] AUTODETECT spr round 1 (radius: 5)
[00:02:15 -77586.862802] AUTODETECT spr round 2 (radius: 10)
[00:04:05 -57680.832789] AUTODETECT spr round 3 (radius: 15)
[00:06:28 -43773.797123] AUTODETECT spr round 4 (radius: 20)
[00:08:36 -38652.576525] AUTODETECT spr round 5 (radius: 25)
[00:11:00 -36783.037956] SPR radius for FAST iterations: 25 (autodetect)
[00:11:00 -36783.037956] Model parameter optimization (eps = 3.000000)
[00:11:20 -36754.464876] FAST spr round 1 (radius: 25)
[00:13:10 -30435.486236] FAST spr round 2 (radius: 25)
[00:14:39 -29593.514274] FAST spr round 3 (radius: 25)
[00:16:02 -29352.239556] FAST spr round 4 (radius: 25)
[00:17:19 -29343.517673] FAST spr round 5 (radius: 25)
[00:18:31 -29343.517612] Model parameter optimization (eps = 1.000000)
[00:18:46 -29332.117060] SLOW spr round 1 (radius: 5)
[00:20:09 -29317.931543] SLOW spr round 2 (radius: 5)
[00:21:33 -29316.922471] SLOW spr round 3 (radius: 5)
[00:22:58 -29316.921512] SLOW spr round 4 (radius: 10)
[00:24:27 -29316.798102] SLOW spr round 5 (radius: 5)
[00:26:10 -29316.455125] SLOW spr round 6 (radius: 5)
[00:27:42 -29316.455084] SLOW spr round 7 (radius: 10)
[00:29:17 -29316.455032] SLOW spr round 8 (radius: 15)
[00:31:15 -29316.455009] SLOW spr round 9 (radius: 20)
[00:33:49 -29316.454987] SLOW spr round 10 (radius: 25)
[00:37:00 -29315.046958] SLOW spr round 11 (radius: 5)
[00:38:51 -29315.042697] SLOW spr round 12 (radius: 10)
[00:40:34 -29311.708363] SLOW spr round 13 (radius: 5)
[00:42:15 -29307.278691] SLOW spr round 14 (radius: 5)
[00:43:44 -29307.278656] SLOW spr round 15 (radius: 10)
[00:45:15 -29307.278638] SLOW spr round 16 (radius: 15)
[00:46:10] [worker #1] ML tree search #2, logLikelihood: -29316.183314
[00:47:17 -29307.278628] SLOW spr round 17 (radius: 20)
[00:49:58 -29307.278620] SLOW spr round 18 (radius: 25)
[00:53:28 -29307.278612] Model parameter optimization (eps = 0.100000)

[00:53:34] [worker #0] ML tree search #1, logLikelihood: -29307.079499

[00:53:34 -149053.008306] Initial branch length optimization
[00:53:36 -120792.107781] Model parameter optimization (eps = 10.000000)
[00:54:09 -119957.755199] AUTODETECT spr round 1 (radius: 5)
[00:55:49 -77121.383914] AUTODETECT spr round 2 (radius: 10)
[00:57:38 -59592.681057] AUTODETECT spr round 3 (radius: 15)
[00:59:44 -49036.007848] AUTODETECT spr round 4 (radius: 20)
[01:01:46 -42334.064621] AUTODETECT spr round 5 (radius: 25)
[01:04:10 -39644.022986] SPR radius for FAST iterations: 25 (autodetect)
[01:04:10 -39644.022986] Model parameter optimization (eps = 3.000000)
[01:04:27 -39606.805035] FAST spr round 1 (radius: 25)
[01:06:19 -29995.964301] FAST spr round 2 (radius: 25)
[01:07:51 -29390.098365] FAST spr round 3 (radius: 25)
[01:09:14 -29332.232829] FAST spr round 4 (radius: 25)
[01:10:35 -29316.022514] FAST spr round 5 (radius: 25)
[01:11:49 -29316.020525] Model parameter optimization (eps = 1.000000)
[01:12:03 -29306.309640] SLOW spr round 1 (radius: 5)
[01:13:30 -29297.263017] SLOW spr round 2 (radius: 5)
[01:14:56 -29296.649058] SLOW spr round 3 (radius: 5)
[01:16:19 -29296.648661] SLOW spr round 4 (radius: 10)
[01:17:48 -29294.826253] SLOW spr round 5 (radius: 5)
[01:19:31 -29294.411672] SLOW spr round 6 (radius: 5)
[01:21:05 -29294.411290] SLOW spr round 7 (radius: 10)
[01:22:40 -29290.746107] SLOW spr round 8 (radius: 5)
[01:24:23 -29289.023077] SLOW spr round 9 (radius: 5)
[01:25:55 -29289.023067] SLOW spr round 10 (radius: 10)
[01:27:29 -29289.023067] SLOW spr round 11 (radius: 15)
[01:29:26 -29286.760141] SLOW spr round 12 (radius: 5)
[01:31:12 -29286.759312] SLOW spr round 13 (radius: 10)
[01:32:52 -29286.189586] SLOW spr round 14 (radius: 5)
[01:34:33 -29285.673693] SLOW spr round 15 (radius: 5)
[01:36:05 -29285.673584] SLOW spr round 16 (radius: 10)
[01:37:39 -29285.673512] SLOW spr round 17 (radius: 15)
[01:39:35 -29285.673510] SLOW spr round 18 (radius: 20)
[01:42:00 -29285.673510] SLOW spr round 19 (radius: 25)
[01:44:52 -29284.138712] SLOW spr round 20 (radius: 5)
[01:46:42 -29284.138073] SLOW spr round 21 (radius: 10)
[01:48:24 -29284.138018] SLOW spr round 22 (radius: 15)
[01:50:19 -29284.138013] SLOW spr round 23 (radius: 20)
[01:52:44 -29284.138012] SLOW spr round 24 (radius: 25)
[01:53:26] [worker #1] ML tree search #4, logLikelihood: -29314.452856
[01:55:34 -29284.138012] Model parameter optimization (eps = 0.100000)

[01:55:37] [worker #0] ML tree search #3, logLikelihood: -29284.136937

[01:55:37 -147712.365540] Initial branch length optimization
[01:55:39 -119784.397299] Model parameter optimization (eps = 10.000000)
[01:56:10 -118901.195318] AUTODETECT spr round 1 (radius: 5)
[01:57:52 -75512.345970] AUTODETECT spr round 2 (radius: 10)
[01:59:40 -56156.715474] AUTODETECT spr round 3 (radius: 15)
[02:01:40 -46929.450861] AUTODETECT spr round 4 (radius: 20)
[02:03:47 -42495.995193] AUTODETECT spr round 5 (radius: 25)
[02:06:06 -39072.391084] SPR radius for FAST iterations: 25 (autodetect)
[02:06:06 -39072.391084] Model parameter optimization (eps = 3.000000)
[02:06:21 -39042.678088] FAST spr round 1 (radius: 25)
[02:08:19 -30782.075369] FAST spr round 2 (radius: 25)
[02:09:52 -29505.301336] FAST spr round 3 (radius: 25)
[02:11:21 -29376.557448] FAST spr round 4 (radius: 25)
[02:12:42 -29347.786975] FAST spr round 5 (radius: 25)
[02:14:00 -29337.716526] FAST spr round 6 (radius: 25)
[02:15:16 -29334.131658] FAST spr round 7 (radius: 25)
[02:16:31 -29333.136773] FAST spr round 8 (radius: 25)
[02:17:46 -29333.136378] Model parameter optimization (eps = 1.000000)
[02:17:59 -29327.855939] SLOW spr round 1 (radius: 5)
[02:19:26 -29318.886558] SLOW spr round 2 (radius: 5)
[02:20:53 -29317.017754] SLOW spr round 3 (radius: 5)
[02:22:21 -29313.404263] SLOW spr round 4 (radius: 5)
[02:23:46 -29313.059934] SLOW spr round 5 (radius: 5)
[02:25:10 -29313.058806] SLOW spr round 6 (radius: 10)
[02:26:39 -29309.826219] SLOW spr round 7 (radius: 5)
[02:28:22 -29309.826154] SLOW spr round 8 (radius: 10)
[02:30:00 -29305.590599] SLOW spr round 9 (radius: 5)
[02:31:43 -29303.498844] SLOW spr round 10 (radius: 5)
[02:33:15 -29303.498624] SLOW spr round 11 (radius: 10)
[02:34:48 -29303.498576] SLOW spr round 12 (radius: 15)
[02:36:46 -29303.412246] SLOW spr round 13 (radius: 20)
[02:39:13 -29300.456365] SLOW spr round 14 (radius: 5)
[02:41:03 -29297.274839] SLOW spr round 15 (radius: 5)
[02:42:41 -29295.556934] SLOW spr round 16 (radius: 5)
[02:44:11 -29295.556830] SLOW spr round 17 (radius: 10)
[02:45:42 -29295.407130] SLOW spr round 18 (radius: 5)
[02:47:23 -29295.216517] SLOW spr round 19 (radius: 5)
[02:48:54 -29295.216319] SLOW spr round 20 (radius: 10)
[02:50:26 -29295.216318] SLOW spr round 21 (radius: 15)
[02:52:22 -29295.216318] SLOW spr round 22 (radius: 20)
[02:54:47 -29295.216318] SLOW spr round 23 (radius: 25)
[02:57:39 -29293.606234] SLOW spr round 24 (radius: 5)
[02:59:28 -29293.605611] SLOW spr round 25 (radius: 10)
[03:01:09 -29293.605540] SLOW spr round 26 (radius: 15)
[03:03:03 -29293.605531] SLOW spr round 27 (radius: 20)
[03:05:28 -29293.605530] SLOW spr round 28 (radius: 25)
[03:08:20 -29293.605530] Model parameter optimization (eps = 0.100000)

[03:08:33] [worker #0] ML tree search #5, logLikelihood: -29289.058955

[03:08:33 -149007.582385] Initial branch length optimization
[03:08:35 -121106.509296] Model parameter optimization (eps = 10.000000)
[03:09:04 -120208.566817] AUTODETECT spr round 1 (radius: 5)
[03:10:46 -79502.044175] AUTODETECT spr round 2 (radius: 10)
[03:12:40 -59760.899982] AUTODETECT spr round 3 (radius: 15)
[03:14:54] [worker #1] ML tree search #6, logLikelihood: -29305.121410
[03:14:58 -47126.421022] AUTODETECT spr round 4 (radius: 20)
[03:17:07 -40016.819909] AUTODETECT spr round 5 (radius: 25)
[03:19:14 -38167.887638] SPR radius for FAST iterations: 25 (autodetect)
[03:19:14 -38167.887638] Model parameter optimization (eps = 3.000000)
[03:19:32 -38131.055234] FAST spr round 1 (radius: 25)
[03:21:18 -31220.905422] FAST spr round 2 (radius: 25)
[03:22:48 -29677.397695] FAST spr round 3 (radius: 25)
[03:24:10 -29389.967667] FAST spr round 4 (radius: 25)
[03:25:32 -29361.597963] FAST spr round 5 (radius: 25)
[03:26:47 -29359.311766] FAST spr round 6 (radius: 25)
[03:28:00 -29359.237880] Model parameter optimization (eps = 1.000000)
[03:28:24 -29339.802381] SLOW spr round 1 (radius: 5)
[03:29:51 -29318.958417] SLOW spr round 2 (radius: 5)
[03:31:17 -29316.760854] SLOW spr round 3 (radius: 5)
[03:32:43 -29316.328269] SLOW spr round 4 (radius: 5)
[03:34:08 -29316.327930] SLOW spr round 5 (radius: 10)
[03:35:40 -29313.176657] SLOW spr round 6 (radius: 5)
[03:37:24 -29305.523926] SLOW spr round 7 (radius: 5)
[03:38:58 -29305.388493] SLOW spr round 8 (radius: 5)
[03:40:27 -29305.337696] SLOW spr round 9 (radius: 10)
[03:41:58 -29303.142787] SLOW spr round 10 (radius: 5)
[03:43:41 -29301.472288] SLOW spr round 11 (radius: 5)
[03:45:13 -29301.472016] SLOW spr round 12 (radius: 10)
[03:46:45 -29301.471994] SLOW spr round 13 (radius: 15)
[03:48:40 -29299.404725] SLOW spr round 14 (radius: 5)
[03:50:27 -29299.389644] SLOW spr round 15 (radius: 10)
[03:52:04 -29297.003931] SLOW spr round 16 (radius: 5)
[03:53:45 -29296.058433] SLOW spr round 17 (radius: 5)
[03:55:16 -29295.607949] SLOW spr round 18 (radius: 5)
[03:56:42 -29294.847191] SLOW spr round 19 (radius: 5)
[03:58:04 -29294.847021] SLOW spr round 20 (radius: 10)
[03:59:32 -29292.545778] SLOW spr round 21 (radius: 5)
[04:01:13 -29292.542927] SLOW spr round 22 (radius: 10)
[04:02:48 -29292.542296] SLOW spr round 23 (radius: 15)
[04:04:43 -29292.542152] SLOW spr round 24 (radius: 20)
[04:07:12 -29291.535053] SLOW spr round 25 (radius: 5)
[04:09:00 -29291.530246] SLOW spr round 26 (radius: 10)
[04:10:41 -29290.630131] SLOW spr round 27 (radius: 5)
[04:12:19 -29290.629851] SLOW spr round 28 (radius: 10)
[04:13:54 -29290.629805] SLOW spr round 29 (radius: 15)
[04:15:48 -29290.629796] SLOW spr round 30 (radius: 20)
[04:18:18 -29290.629795] SLOW spr round 31 (radius: 25)
[04:21:20 -29290.629795] Model parameter optimization (eps = 0.100000)

[04:21:27] [worker #0] ML tree search #7, logLikelihood: -29290.442060

[04:21:27 -147494.095374] Initial branch length optimization
[04:21:30 -119440.929180] Model parameter optimization (eps = 10.000000)
[04:21:57 -118581.511136] AUTODETECT spr round 1 (radius: 5)
[04:23:01] [worker #1] ML tree search #8, logLikelihood: -29331.242013
[04:23:38 -77639.661800] AUTODETECT spr round 2 (radius: 10)
[04:25:30 -58716.452343] AUTODETECT spr round 3 (radius: 15)
[04:27:42 -47731.968827] AUTODETECT spr round 4 (radius: 20)
[04:29:54 -39838.691246] AUTODETECT spr round 5 (radius: 25)
[04:32:10 -37437.377086] SPR radius for FAST iterations: 25 (autodetect)
[04:32:10 -37437.377086] Model parameter optimization (eps = 3.000000)
[04:32:33 -37358.699791] FAST spr round 1 (radius: 25)
[04:34:20 -31480.273953] FAST spr round 2 (radius: 25)
[04:35:53 -30145.519521] FAST spr round 3 (radius: 25)
[04:37:14 -29424.683557] FAST spr round 4 (radius: 25)
[04:38:34 -29341.832404] FAST spr round 5 (radius: 25)
[04:39:52 -29328.929003] FAST spr round 6 (radius: 25)
[04:41:06 -29328.928706] Model parameter optimization (eps = 1.000000)
[04:41:20 -29320.749809] SLOW spr round 1 (radius: 5)
[04:42:46 -29315.691963] SLOW spr round 2 (radius: 5)
[04:44:10 -29315.688225] SLOW spr round 3 (radius: 10)
[04:45:39 -29315.346023] SLOW spr round 4 (radius: 5)
[04:47:20 -29315.345859] SLOW spr round 5 (radius: 10)
[04:49:01 -29315.345819] SLOW spr round 6 (radius: 15)
[04:50:58 -29314.687513] SLOW spr round 7 (radius: 5)
[04:52:44 -29314.687509] SLOW spr round 8 (radius: 10)
[04:54:27 -29314.687506] SLOW spr round 9 (radius: 15)
[04:56:25 -29314.687506] SLOW spr round 10 (radius: 20)
[04:58:50 -29309.206303] SLOW spr round 11 (radius: 5)
[05:00:39 -29308.318787] SLOW spr round 12 (radius: 5)
[05:02:15 -29308.057956] SLOW spr round 13 (radius: 5)
[05:03:46 -29308.057881] SLOW spr round 14 (radius: 10)
[05:05:19 -29308.057879] SLOW spr round 15 (radius: 15)
[05:07:19 -29308.057879] SLOW spr round 16 (radius: 20)
[05:09:41 -29308.057879] SLOW spr round 17 (radius: 25)
[05:12:32 -29308.057879] Model parameter optimization (eps = 0.100000)

[05:12:39] [worker #0] ML tree search #9, logLikelihood: -29308.033343

[05:12:40 -149088.944968] Initial branch length optimization
[05:12:42 -121424.816319] Model parameter optimization (eps = 10.000000)
[05:13:18 -120509.506474] AUTODETECT spr round 1 (radius: 5)
[05:15:03 -77795.751473] AUTODETECT spr round 2 (radius: 10)
[05:16:53 -57268.190949] AUTODETECT spr round 3 (radius: 15)
[05:19:00 -47399.727789] AUTODETECT spr round 4 (radius: 20)
[05:21:09 -41084.043928] AUTODETECT spr round 5 (radius: 25)
[05:24:03 -36474.769392] SPR radius for FAST iterations: 25 (autodetect)
[05:24:03 -36474.769392] Model parameter optimization (eps = 3.000000)
[05:24:25 -36432.745283] FAST spr round 1 (radius: 25)
[05:26:18 -29930.020548] FAST spr round 2 (radius: 25)
[05:27:50 -29485.769944] FAST spr round 3 (radius: 25)
[05:29:11 -29459.836462] FAST spr round 4 (radius: 25)
[05:30:28 -29453.512644] FAST spr round 5 (radius: 25)
[05:31:27] [worker #1] ML tree search #10, logLikelihood: -29293.425149
[05:31:43 -29452.595928] FAST spr round 6 (radius: 25)
[05:32:57 -29452.483884] FAST spr round 7 (radius: 25)
[05:34:12 -29452.483492] Model parameter optimization (eps = 1.000000)
[05:34:25 -29440.586606] SLOW spr round 1 (radius: 5)
[05:35:52 -29435.744175] SLOW spr round 2 (radius: 5)
[05:37:18 -29434.475445] SLOW spr round 3 (radius: 5)
[05:38:42 -29434.475049] SLOW spr round 4 (radius: 10)
[05:40:11 -29431.824788] SLOW spr round 5 (radius: 5)
[05:41:53 -29431.480514] SLOW spr round 6 (radius: 5)
[05:43:26 -29431.480367] SLOW spr round 7 (radius: 10)
[05:44:59 -29431.480270] SLOW spr round 8 (radius: 15)
[05:46:53 -29431.126983] SLOW spr round 9 (radius: 5)
[05:48:39 -29431.126967] SLOW spr round 10 (radius: 10)
[05:50:18 -29428.919260] SLOW spr round 11 (radius: 5)
[05:51:58 -29427.842999] SLOW spr round 12 (radius: 5)
[05:53:31 -29426.131728] SLOW spr round 13 (radius: 5)
[05:54:59 -29426.131350] SLOW spr round 14 (radius: 10)
[05:56:29 -29426.131347] SLOW spr round 15 (radius: 15)
[05:58:27 -29425.558442] SLOW spr round 16 (radius: 5)
[06:00:15 -29424.289173] SLOW spr round 17 (radius: 5)
[06:01:50 -29424.289154] SLOW spr round 18 (radius: 10)
[06:03:24 -29424.289154] SLOW spr round 19 (radius: 15)
[06:05:19 -29424.289154] SLOW spr round 20 (radius: 20)
[06:07:43 -29424.289154] SLOW spr round 21 (radius: 25)
[06:10:28 -29417.658073] SLOW spr round 22 (radius: 5)
[06:12:17 -29417.296991] SLOW spr round 23 (radius: 5)
[06:13:54 -29417.296836] SLOW spr round 24 (radius: 10)
[06:15:29 -29416.381831] SLOW spr round 25 (radius: 5)
[06:17:08 -29416.381762] SLOW spr round 26 (radius: 10)
[06:18:42 -29416.381732] SLOW spr round 27 (radius: 15)
[06:20:36 -29416.381713] SLOW spr round 28 (radius: 20)
[06:23:00 -29416.381700] SLOW spr round 29 (radius: 25)
[06:25:43 -29415.715730] SLOW spr round 30 (radius: 5)
[06:27:31 -29415.706772] SLOW spr round 31 (radius: 10)
[06:29:11 -29415.704992] SLOW spr round 32 (radius: 15)
[06:31:04 -29415.704602] SLOW spr round 33 (radius: 20)
[06:31:50] [worker #1] ML tree search #12, logLikelihood: -29447.397948
[06:33:27 -29415.704512] SLOW spr round 34 (radius: 25)
[06:36:10 -29415.704491] Model parameter optimization (eps = 0.100000)

[06:36:15] [worker #0] ML tree search #11, logLikelihood: -29415.612115

[06:36:15 -147389.039799] Initial branch length optimization
[06:36:17 -119179.349004] Model parameter optimization (eps = 10.000000)
[06:36:43 -118264.394081] AUTODETECT spr round 1 (radius: 5)
[06:38:23 -80576.005914] AUTODETECT spr round 2 (radius: 10)
[06:40:12 -61098.264873] AUTODETECT spr round 3 (radius: 15)
[06:42:09 -49699.485825] AUTODETECT spr round 4 (radius: 20)
[06:44:22 -40852.320260] AUTODETECT spr round 5 (radius: 25)
[06:46:40 -36742.258728] SPR radius for FAST iterations: 25 (autodetect)
[06:46:40 -36742.258728] Model parameter optimization (eps = 3.000000)
[06:46:56 -36696.543283] FAST spr round 1 (radius: 25)
[06:48:40 -30334.817881] FAST spr round 2 (radius: 25)
[06:50:13 -29846.090841] FAST spr round 3 (radius: 25)
[06:51:37 -29763.975320] FAST spr round 4 (radius: 25)
[06:52:55 -29749.918271] FAST spr round 5 (radius: 25)
[06:54:12 -29692.041602] FAST spr round 6 (radius: 25)
[06:55:28 -29575.279103] FAST spr round 7 (radius: 25)
[06:56:43 -29565.119450] FAST spr round 8 (radius: 25)
[06:57:57 -29565.119378] Model parameter optimization (eps = 1.000000)
[06:58:08 -29563.367693] SLOW spr round 1 (radius: 5)
[06:59:35 -29554.934349] SLOW spr round 2 (radius: 5)
[07:01:00 -29552.459890] SLOW spr round 3 (radius: 5)
[07:02:24 -29552.322841] SLOW spr round 4 (radius: 5)
[07:03:47 -29551.949833] SLOW spr round 5 (radius: 5)
[07:05:10 -29551.949656] SLOW spr round 6 (radius: 10)
[07:06:37 -29550.932984] SLOW spr round 7 (radius: 5)
[07:08:17 -29550.682750] SLOW spr round 8 (radius: 5)
[07:09:48 -29550.682750] SLOW spr round 9 (radius: 10)
[07:11:21 -29550.372678] SLOW spr round 10 (radius: 5)
[07:12:59 -29550.372678] SLOW spr round 11 (radius: 10)
[07:14:33 -29550.372678] SLOW spr round 12 (radius: 15)
[07:16:29 -29541.430654] SLOW spr round 13 (radius: 5)
[07:18:16 -29536.071567] SLOW spr round 14 (radius: 5)
[07:19:51 -29536.071537] SLOW spr round 15 (radius: 10)
[07:21:26 -29411.439904] SLOW spr round 16 (radius: 5)
[07:23:10 -29352.310206] SLOW spr round 17 (radius: 5)
[07:24:41 -29351.312540] SLOW spr round 18 (radius: 5)
[07:26:07 -29351.281590] SLOW spr round 19 (radius: 10)
[07:27:37 -29345.503111] SLOW spr round 20 (radius: 5)
[07:29:18 -29344.916352] SLOW spr round 21 (radius: 5)
[07:30:49 -29344.276160] SLOW spr round 22 (radius: 5)
[07:32:15 -29344.275858] SLOW spr round 23 (radius: 10)
[07:33:45 -29344.275853] SLOW spr round 24 (radius: 15)
[07:35:44 -29337.755623] SLOW spr round 25 (radius: 5)
[07:37:30 -29334.060609] SLOW spr round 26 (radius: 5)
[07:39:04 -29334.060480] SLOW spr round 27 (radius: 10)
[07:40:38 -29334.060479] SLOW spr round 28 (radius: 15)
[07:42:37 -29333.572851] SLOW spr round 29 (radius: 5)
[07:44:23 -29333.572557] SLOW spr round 30 (radius: 10)
[07:46:04 -29333.572505] SLOW spr round 31 (radius: 15)
[07:48:00 -29333.572496] SLOW spr round 32 (radius: 20)
[07:50:30 -29329.617158] SLOW spr round 33 (radius: 5)
[07:52:18 -29329.616632] SLOW spr round 34 (radius: 10)
[07:52:44] [worker #1] ML tree search #14, logLikelihood: -29308.802731
[07:54:01 -29329.616613] SLOW spr round 35 (radius: 15)
[07:55:57 -29329.616612] SLOW spr round 36 (radius: 20)
[07:58:25 -29329.616612] SLOW spr round 37 (radius: 25)
[08:01:26 -29328.767726] SLOW spr round 38 (radius: 5)
[08:03:15 -29328.767713] SLOW spr round 39 (radius: 10)
[08:05:00 -29328.767700] SLOW spr round 40 (radius: 15)
[08:06:56 -29328.767689] SLOW spr round 41 (radius: 20)
[08:09:25 -29328.767678] SLOW spr round 42 (radius: 25)
[08:12:25 -29328.767667] Model parameter optimization (eps = 0.100000)

[08:12:28] [worker #0] ML tree search #13, logLikelihood: -29328.753567

[08:12:28 -148165.653439] Initial branch length optimization
[08:12:30 -120073.061563] Model parameter optimization (eps = 10.000000)
[08:13:16 -119118.228117] AUTODETECT spr round 1 (radius: 5)
[08:14:59 -78427.253409] AUTODETECT spr round 2 (radius: 10)
[08:16:50 -58097.098649] AUTODETECT spr round 3 (radius: 15)
[08:18:58 -46579.465448] AUTODETECT spr round 4 (radius: 20)
[08:21:14 -36417.568436] AUTODETECT spr round 5 (radius: 25)
[08:23:29 -35565.039627] SPR radius for FAST iterations: 25 (autodetect)
[08:23:29 -35565.039627] Model parameter optimization (eps = 3.000000)
[08:23:47 -35523.805771] FAST spr round 1 (radius: 25)
[08:25:30 -30072.815561] FAST spr round 2 (radius: 25)
[08:27:02 -29640.078483] FAST spr round 3 (radius: 25)
[08:28:26 -29413.219990] FAST spr round 4 (radius: 25)
[08:29:49 -29354.138494] FAST spr round 5 (radius: 25)
[08:31:07 -29342.557534] FAST spr round 6 (radius: 25)
[08:32:22 -29341.900811] FAST spr round 7 (radius: 25)
[08:33:37 -29341.900803] Model parameter optimization (eps = 1.000000)
[08:33:49 -29337.978613] SLOW spr round 1 (radius: 5)
[08:35:17 -29323.982395] SLOW spr round 2 (radius: 5)
[08:36:45 -29321.776488] SLOW spr round 3 (radius: 5)
[08:38:09 -29321.775207] SLOW spr round 4 (radius: 10)
[08:39:40 -29320.678476] SLOW spr round 5 (radius: 5)
[08:41:24 -29320.402446] SLOW spr round 6 (radius: 5)
[08:42:58 -29320.402410] SLOW spr round 7 (radius: 10)
[08:44:36 -29318.301015] SLOW spr round 8 (radius: 5)
[08:46:26 -29318.300654] SLOW spr round 9 (radius: 10)
[08:48:04 -29317.406523] SLOW spr round 10 (radius: 5)
[08:49:46 -29315.946059] SLOW spr round 11 (radius: 5)
[08:51:19 -29315.946044] SLOW spr round 12 (radius: 10)
[08:52:53 -29315.946040] SLOW spr round 13 (radius: 15)
[08:54:55 -29314.486446] SLOW spr round 14 (radius: 5)
[08:56:43 -29314.485793] SLOW spr round 15 (radius: 10)
[08:58:23 -29314.485713] SLOW spr round 16 (radius: 15)
[09:00:22 -29314.485700] SLOW spr round 17 (radius: 20)
[09:02:58 -29314.485694] SLOW spr round 18 (radius: 25)
[09:06:01 -29314.485691] Model parameter optimization (eps = 0.100000)

[09:06:05] [worker #0] ML tree search #15, logLikelihood: -29314.429587

[09:06:05 -148291.491460] Initial branch length optimization
[09:06:07 -120272.826183] Model parameter optimization (eps = 10.000000)
[09:06:37 -119337.105145] AUTODETECT spr round 1 (radius: 5)
[09:08:17 -76597.176482] AUTODETECT spr round 2 (radius: 10)
[09:10:08 -58255.458802] AUTODETECT spr round 3 (radius: 15)
[09:12:21 -49593.784312] AUTODETECT spr round 4 (radius: 20)
[09:15:04 -40087.387149] AUTODETECT spr round 5 (radius: 25)
[09:17:46 -37963.626269] SPR radius for FAST iterations: 25 (autodetect)
[09:17:46 -37963.626269] Model parameter optimization (eps = 3.000000)
[09:18:09 -37898.927022] FAST spr round 1 (radius: 25)
[09:19:58 -30681.476176] FAST spr round 2 (radius: 25)
[09:21:32 -29618.385877] FAST spr round 3 (radius: 25)
[09:22:59 -29410.117065] FAST spr round 4 (radius: 25)
[09:23:30] [worker #1] ML tree search #16, logLikelihood: -29294.186007
[09:24:26 -29325.706217] FAST spr round 5 (radius: 25)
[09:25:45 -29323.949478] FAST spr round 6 (radius: 25)
[09:27:03 -29323.948051] Model parameter optimization (eps = 1.000000)
[09:27:12 -29322.096521] SLOW spr round 1 (radius: 5)
[09:28:44 -29314.527336] SLOW spr round 2 (radius: 5)
[09:30:13 -29314.525981] SLOW spr round 3 (radius: 10)
[09:31:48 -29313.574237] SLOW spr round 4 (radius: 5)
[09:33:35 -29313.256342] SLOW spr round 5 (radius: 5)
[09:35:10 -29312.679927] SLOW spr round 6 (radius: 5)
[09:36:39 -29312.679847] SLOW spr round 7 (radius: 10)
[09:38:10 -29312.679844] SLOW spr round 8 (radius: 15)
[09:40:14 -29307.656279] SLOW spr round 9 (radius: 5)
[09:42:01 -29307.654403] SLOW spr round 10 (radius: 10)
[09:43:41 -29307.654044] SLOW spr round 11 (radius: 15)
[09:45:36 -29307.653960] SLOW spr round 12 (radius: 20)
[09:48:05 -29303.884522] SLOW spr round 13 (radius: 5)
[09:49:56 -29303.814663] SLOW spr round 14 (radius: 10)
[09:51:38 -29303.814514] SLOW spr round 15 (radius: 15)
[09:53:35 -29303.814372] SLOW spr round 16 (radius: 20)
[09:56:09 -29303.814293] SLOW spr round 17 (radius: 25)
[09:59:17 -29302.051802] SLOW spr round 18 (radius: 5)
[10:01:09 -29301.932180] SLOW spr round 19 (radius: 5)
[10:02:46 -29301.931970] SLOW spr round 20 (radius: 10)
[10:04:21 -29300.514193] SLOW spr round 21 (radius: 5)
[10:06:01 -29300.514191] SLOW spr round 22 (radius: 10)
[10:07:38 -29300.514191] SLOW spr round 23 (radius: 15)
[10:09:42 -29300.514191] SLOW spr round 24 (radius: 20)
[10:12:30 -29300.514191] SLOW spr round 25 (radius: 25)
[10:15:54 -29299.465723] SLOW spr round 26 (radius: 5)
[10:17:53 -29299.464800] SLOW spr round 27 (radius: 10)
[10:19:46 -29297.402702] SLOW spr round 28 (radius: 5)
[10:21:34 -29297.402585] SLOW spr round 29 (radius: 10)
[10:23:14 -29297.402585] SLOW spr round 30 (radius: 15)
[10:25:13 -29297.402585] SLOW spr round 31 (radius: 20)
[10:27:49 -29297.402585] SLOW spr round 32 (radius: 25)
[10:31:01 -29297.402585] Model parameter optimization (eps = 0.100000)

[10:31:13] [worker #0] ML tree search #17, logLikelihood: -29297.259137

[10:31:13 -148781.521152] Initial branch length optimization
[10:31:15 -119902.901106] Model parameter optimization (eps = 10.000000)
[10:31:49 -119005.758766] AUTODETECT spr round 1 (radius: 5)
[10:33:35 -79014.686645] AUTODETECT spr round 2 (radius: 10)
[10:35:29 -57961.347673] AUTODETECT spr round 3 (radius: 15)
[10:37:44 -46934.959217] AUTODETECT spr round 4 (radius: 20)
[10:39:57 -41163.810467] AUTODETECT spr round 5 (radius: 25)
[10:42:36 -37146.795170] SPR radius for FAST iterations: 25 (autodetect)
[10:42:36 -37146.795170] Model parameter optimization (eps = 3.000000)
[10:43:00 -37095.031928] FAST spr round 1 (radius: 25)
[10:44:42] [worker #1] ML tree search #18, logLikelihood: -29314.051916
[10:44:48 -30080.659298] FAST spr round 2 (radius: 25)
[10:46:22 -29488.848071] FAST spr round 3 (radius: 25)
[10:47:50 -29450.981135] FAST spr round 4 (radius: 25)
[10:49:13 -29434.963175] FAST spr round 5 (radius: 25)
[10:50:29 -29434.416105] FAST spr round 6 (radius: 25)
[10:51:45 -29434.414587] Model parameter optimization (eps = 1.000000)
[10:51:57 -29431.361322] SLOW spr round 1 (radius: 5)
[10:53:24 -29425.880577] SLOW spr round 2 (radius: 5)
[10:54:49 -29425.879592] SLOW spr round 3 (radius: 10)
[10:56:19 -29422.433889] SLOW spr round 4 (radius: 5)
[10:58:03 -29419.710676] SLOW spr round 5 (radius: 5)
[10:59:37 -29419.169962] SLOW spr round 6 (radius: 5)
[11:01:06 -29419.169918] SLOW spr round 7 (radius: 10)
[11:02:37 -29419.169900] SLOW spr round 8 (radius: 15)
[11:04:43 -29417.192149] SLOW spr round 9 (radius: 5)
[11:06:30 -29417.192134] SLOW spr round 10 (radius: 10)
[11:08:10 -29417.192120] SLOW spr round 11 (radius: 15)
[11:10:11 -29417.192107] SLOW spr round 12 (radius: 20)
[11:12:54 -29415.315146] SLOW spr round 13 (radius: 5)
[11:14:46 -29412.729138] SLOW spr round 14 (radius: 5)
[11:16:24 -29412.729023] SLOW spr round 15 (radius: 10)
[11:17:59 -29412.729006] SLOW spr round 16 (radius: 15)
[11:20:01 -29412.728992] SLOW spr round 17 (radius: 20)
[11:22:42 -29412.728979] SLOW spr round 18 (radius: 25)
[11:26:00 -29409.764100] SLOW spr round 19 (radius: 5)
[11:27:51 -29409.652971] SLOW spr round 20 (radius: 5)
[11:29:30 -29409.652964] SLOW spr round 21 (radius: 10)
[11:31:12 -29409.652957] SLOW spr round 22 (radius: 15)
[11:33:20 -29409.652952] SLOW spr round 23 (radius: 20)
[11:36:10 -29409.652946] SLOW spr round 24 (radius: 25)
[11:39:41 -29409.652941] Model parameter optimization (eps = 0.100000)

[11:39:46] [worker #0] ML tree search #19, logLikelihood: -29409.605538

[11:47:34] [worker #1] ML tree search #20, logLikelihood: -29310.045537

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.411713,0.697953) (0.431432,1.086441) (0.147053,1.482141) (0.009803,2.648819) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -29284.136937

AIC score: 62554.273874 / AICc score: 8010638.273874 / BIC score: 67785.844690
Free parameters (model + branch lengths): 1993

WARNING: Number of free parameters (K=1993) is larger than alignment size (n=102).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 56 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q15043/3_mltree/Q15043.raxml.bestTreeCollapsed
Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q15043/3_mltree/Q15043.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q15043/3_mltree/Q15043.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q15043/3_mltree/Q15043.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q15043/3_mltree/Q15043.raxml.log

Analysis started: 05-Jul-2021 00:53:39 / finished: 05-Jul-2021 12:41:13

Elapsed time: 42454.803 seconds

Consumed energy: 3946.242 Wh (= 20 km in an electric car, or 99 km with an e-scooter!)