RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 15-Jul-2021 07:47:27 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14839/2_msa/Q14839_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14839/3_mltree/Q14839 --seed 2 --threads 9 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (9 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14839/2_msa/Q14839_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 858 sites WARNING: Sequences tr_F1QWV5_F1QWV5_DANRE_7955 and tr_F1RBT2_F1RBT2_DANRE_7955 are exactly identical! WARNING: Sequences tr_F1NH79_F1NH79_CHICK_9031 and tr_G1NMS5_G1NMS5_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NH79_F1NH79_CHICK_9031 and tr_A0A093I3V1_A0A093I3V1_STRCA_441894 are exactly identical! WARNING: Sequences tr_F1NH79_F1NH79_CHICK_9031 and tr_A0A091GGJ8_A0A091GGJ8_9AVES_55661 are exactly identical! WARNING: Sequences tr_F1NH79_F1NH79_CHICK_9031 and tr_A0A218VD67_A0A218VD67_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NH79_F1NH79_CHICK_9031 and tr_A0A226MYT2_A0A226MYT2_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q06A37_CHD7_CHICK_9031 and tr_G1NF51_G1NF51_MELGA_9103 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_M3YZJ4_M3YZJ4_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_G1PPV0_G1PPV0_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_G3RRA9_G3RRA9_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_J9NW81_J9NW81_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_K7B9Z5_K7B9Z5_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_F7B896_F7B896_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_W5PC02_W5PC02_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_E9PU01_E9PU01_RAT_10116 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_I3MA51_I3MA51_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_H0X1S9_H0X1S9_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_H0VCI4_H0VCI4_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and sp_Q14839_CHD4_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_F6ZS61_F6ZS61_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_G5CAQ0_G5CAQ0_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_F7FFV5_F7FFV5_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_F1SLR5_F1SLR5_PIG_9823 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_G1M6Q8_G1M6Q8_AILME_9646 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_F1N3F6_F1N3F6_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A337STL3_A0A337STL3_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A2I3LYY7_A0A2I3LYY7_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A091CMZ7_A0A091CMZ7_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A0D9RDH2_A0A0D9RDH2_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A1S3A1J3_A0A1S3A1J3_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A1S3FSS6_A0A1S3FSS6_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A2K5KML3_A0A2K5KML3_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A2R9A4P1_A0A2R9A4P1_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A2U3WWY2_A0A2U3WWY2_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A2U3Y2N2_A0A2U3Y2N2_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A2Y9RQJ1_A0A2Y9RQJ1_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A2Y9L8Z4_A0A2Y9L8Z4_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A2Y9NDV6_A0A2Y9NDV6_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A2Y9T5A1_A0A2Y9T5A1_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A384BGQ1_A0A384BGQ1_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q6PDQ2_CHD4_MOUSE_10090 and tr_A0A383Z5R8_A0A383Z5R8_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3XXC0_M3XXC0_MUSPF_9669 and tr_J9P6Y8_J9P6Y8_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XXC0_M3XXC0_MUSPF_9669 and tr_A0A2U3ZLY1_A0A2U3ZLY1_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XXC0_M3XXC0_MUSPF_9669 and tr_A0A2U3X8Q8_A0A2U3X8Q8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XXC0_M3XXC0_MUSPF_9669 and tr_A0A2Y9JRM9_A0A2Y9JRM9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XXC0_M3XXC0_MUSPF_9669 and tr_A0A384CXB1_A0A384CXB1_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Z1K2_M3Z1K2_MUSPF_9669 and tr_A0A2U3WHW2_A0A2U3WHW2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z1K2_M3Z1K2_MUSPF_9669 and tr_A0A2U3Y6D2_A0A2U3Y6D2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3Z1K2_M3Z1K2_MUSPF_9669 and tr_A0A2Y9K0Q8_A0A2Y9K0Q8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_D8SK03_D8SK03_SELML_88036 and tr_D8T4M1_D8T4M1_SELML_88036 are exactly identical! WARNING: Sequences tr_A0A2I2Y9R3_A0A2I2Y9R3_GORGO_9595 and tr_H2N9B8_H2N9B8_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2Y9R3_A0A2I2Y9R3_GORGO_9595 and tr_A0A2I3SB75_A0A2I3SB75_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2Y9R3_A0A2I2Y9R3_GORGO_9595 and sp_Q8TDI0_CHD5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2Y9R3_A0A2I2Y9R3_GORGO_9595 and tr_A0A096N0D3_A0A096N0D3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I2Y9R3_A0A2I2Y9R3_GORGO_9595 and tr_A0A0D9S8T5_A0A0D9S8T5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2Y9R3_A0A2I2Y9R3_GORGO_9595 and tr_A0A2K6DCZ2_A0A2K6DCZ2_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I2Y9R3_A0A2I2Y9R3_GORGO_9595 and tr_A0A2R9B2T3_A0A2R9B2T3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_H2QC61_H2QC61_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_I3MTW5_I3MTW5_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_H0W109_H0W109_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and sp_Q12873_CHD3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_F7E9J1_F7E9J1_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_A0A091CJU8_A0A091CJU8_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_A0A0D9RFE3_A0A0D9RFE3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_A0A3Q0E7Q2_A0A3Q0E7Q2_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_A0A2K5NL31_A0A2K5NL31_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RCF2_G3RCF2_GORGO_9595 and tr_A0A2K5YLF9_A0A2K5YLF9_MANLE_9568 are exactly identical! WARNING: Sequences tr_Q29KH0_Q29KH0_DROPS_46245 and tr_B4GSA0_B4GSA0_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_F7CN25_F7CN25_HORSE_9796 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_G3SLZ2_G3SLZ2_LOXAF_9785 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_A0A286ZJL1_A0A286ZJL1_PIG_9823 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_L5JZA2_L5JZA2_PTEAL_9402 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_A0A2U3ZDU7_A0A2U3ZDU7_ODORO_9708 are exactly identical! WARNING: Sequences tr_E2RTI2_E2RTI2_CANLF_9615 and tr_A0A2Y9DK95_A0A2Y9DK95_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A0A2I3RQ86_A0A2I3RQ86_PANTR_9598 and tr_I3LYB3_I3LYB3_ICTTR_43179 are exactly identical! WARNING: Sequences tr_A0A2I3RQ86_A0A2I3RQ86_PANTR_9598 and sp_O14647_CHD2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3RQ86_A0A2I3RQ86_PANTR_9598 and tr_G7MW02_G7MW02_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3RQ86_A0A2I3RQ86_PANTR_9598 and tr_G7P9H9_G7P9H9_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3RQ86_A0A2I3RQ86_PANTR_9598 and tr_A0A0D9RWR2_A0A0D9RWR2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3RQ86_A0A2I3RQ86_PANTR_9598 and tr_A0A2K5LN76_A0A2K5LN76_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2J8KJR8_A0A2J8KJR8_PANTR_9598 and sp_O14646_CHD1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2J8KJR8_A0A2J8KJR8_PANTR_9598 and tr_G7P802_G7P802_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2J8KJR8_A0A2J8KJR8_PANTR_9598 and tr_A0A096MMS1_A0A096MMS1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2J8KJR8_A0A2J8KJR8_PANTR_9598 and tr_A0A0D9RS42_A0A0D9RS42_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2J8KJR8_A0A2J8KJR8_PANTR_9598 and tr_A0A2K5LU02_A0A2K5LU02_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2J8KJR8_A0A2J8KJR8_PANTR_9598 and tr_A0A2K6EAC4_A0A2K6EAC4_MACNE_9545 are exactly identical! WARNING: Sequences tr_W5PKZ0_W5PKZ0_SHEEP_9940 and tr_G3MXX3_G3MXX3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A087ZSL5_A0A087ZSL5_APIME_7460 and tr_A0A0N0BJI5_A0A0N0BJI5_9HYME_166423 are exactly identical! WARNING: Sequences tr_A0A158N917_A0A158N917_ATTCE_12957 and tr_A0A195BVQ5_A0A195BVQ5_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A0E0HLU3_A0A0E0HLU3_ORYNI_4536 and tr_A0A0D3GDJ7_A0A0D3GDJ7_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0I582_A0A0E0I582_ORYNI_4536 and tr_B8B5J6_B8B5J6_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0I582_A0A0E0I582_ORYNI_4536 and tr_I1QCW0_I1QCW0_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0I582_A0A0E0I582_ORYNI_4536 and tr_A0A0E0QC99_A0A0E0QC99_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A1P6BYH3_A0A1P6BYH3_BRUMA_6279 and tr_A0A0N4TMU4_A0A0N4TMU4_BRUPA_6280 are exactly identical! WARNING: Sequences tr_I1QAU8_I1QAU8_ORYGL_4538 and tr_I1QWL9_I1QWL9_ORYGL_4538 are exactly identical! WARNING: Sequences tr_H0YSJ9_H0YSJ9_TAEGU_59729 and tr_U3K7H4_U3K7H4_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0YSJ9_H0YSJ9_TAEGU_59729 and tr_A0A093PR00_A0A093PR00_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0YSJ9_H0YSJ9_TAEGU_59729 and tr_A0A087QHX5_A0A087QHX5_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A0E0PUC5_A0A0E0PUC5_ORYRU_4529 and tr_A0A0E0A5X8_A0A0E0A5X8_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_M3W5P4_M3W5P4_FELCA_9685 and tr_A0A2U3WPL5_A0A2U3WPL5_ODORO_9708 are exactly identical! WARNING: Sequences tr_M4F7Z7_M4F7Z7_BRARP_51351 and tr_A0A078HIM5_A0A078HIM5_BRANA_3708 are exactly identical! WARNING: Sequences tr_A0A2I3MAB0_A0A2I3MAB0_PAPAN_9555 and tr_A0A2K6AMM4_A0A2K6AMM4_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3MAB0_A0A2I3MAB0_PAPAN_9555 and tr_A0A2R9AVH2_A0A2R9AVH2_PANPA_9597 are exactly identical! WARNING: Sequences tr_V4UCK9_V4UCK9_9ROSI_85681 and tr_A0A2H5P9M3_A0A2H5P9M3_CITUN_55188 are exactly identical! WARNING: Sequences tr_V4UCK9_V4UCK9_9ROSI_85681 and tr_A0A2H5P9N9_A0A2H5P9N9_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A151MCQ8_A0A151MCQ8_ALLMI_8496 and tr_A0A3Q0H7X5_A0A3Q0H7X5_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091IZ23_A0A091IZ23_EGRGA_188379 and tr_A0A099ZXZ2_A0A099ZXZ2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2I0MDG8_A0A2I0MDG8_COLLI_8932 and tr_A0A1V4JED6_A0A1V4JED6_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1D6T8_A0A0V1D6T8_TRIBR_45882 and tr_A0A0V0WK91_A0A0V0WK91_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1D6T8_A0A0V1D6T8_TRIBR_45882 and tr_A0A0V0VYM5_A0A0V0VYM5_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1D6T8_A0A0V1D6T8_TRIBR_45882 and tr_A0A0V1LNA2_A0A0V1LNA2_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1D6T8_A0A0V1D6T8_TRIBR_45882 and tr_A0A0V1AF14_A0A0V1AF14_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1D6T8_A0A0V1D6T8_TRIBR_45882 and tr_A0A0V0UE67_A0A0V0UE67_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1N729_A0A0V1N729_9BILA_268474 and tr_A0A0V1HWE3_A0A0V1HWE3_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A151X8W2_A0A151X8W2_9HYME_64791 and tr_A0A151JSY6_A0A151JSY6_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A1S4AIJ4_A0A1S4AIJ4_TOBAC_4097 and tr_A0A1U7YBE1_A0A1U7YBE1_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1I7T7X0_A0A1I7T7X0_9PELO_1561998 and tr_A0A1I7T7X1_A0A1I7T7X1_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A0A060Y1B6_A0A060Y1B6_ONCMY_8022 and tr_A0A060YQY4_A0A060YQY4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MWH2_A0A226MWH2_CALSU_9009 and tr_A0A226PF01_A0A226PF01_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2H3C893_A0A2H3C893_9AGAR_1076256 and tr_A0A284QM25_A0A284QM25_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A2D0SQV4_A0A2D0SQV4_ICTPU_7998 and tr_A0A2D0SQV7_A0A2D0SQV7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4C6X5_A0A2U4C6X5_TURTR_9739 and tr_A0A2Y9Q649_A0A2Y9Q649_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4C6X5_A0A2U4C6X5_TURTR_9739 and tr_A0A2Y9TH35_A0A2Y9TH35_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 123 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14839/3_mltree/Q14839.raxml.reduced.phy Alignment comprises 1 partitions and 857 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 858 / 857 Gaps: 4.66 % Invariant sites: 1.17 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14839/3_mltree/Q14839.raxml.rba Parallelization scheme autoconfig: 3 worker(s) x 3 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 286 / 22880 [00:00:00] Data distribution: max. searches per worker: 7 Starting ML tree search with 20 distinct starting trees [00:00:00 -1286498.103208] Initial branch length optimization [00:00:09 -1016505.929551] Model parameter optimization (eps = 10.000000) [00:01:02 -1013859.874608] AUTODETECT spr round 1 (radius: 5) [00:04:39 -621192.861164] AUTODETECT spr round 2 (radius: 10) [00:08:20 -432720.523954] AUTODETECT spr round 3 (radius: 15) [00:12:00 -325694.146920] AUTODETECT spr round 4 (radius: 20) [00:16:24 -298571.973377] AUTODETECT spr round 5 (radius: 25) [00:22:13 -295205.379032] SPR radius for FAST iterations: 25 (autodetect) [00:22:13 -295205.379032] Model parameter optimization (eps = 3.000000) [00:22:33 -295148.093831] FAST spr round 1 (radius: 25) [00:26:17 -254626.999426] FAST spr round 2 (radius: 25) [00:29:17 -232012.388417] FAST spr round 3 (radius: 25) [00:31:43 -215473.205445] FAST spr round 4 (radius: 25) [00:34:06 -212965.445877] FAST spr round 5 (radius: 25) [00:36:14 -212929.677764] FAST spr round 6 (radius: 25) [00:38:11 -212928.396511] FAST spr round 7 (radius: 25) [00:40:04 -212928.396494] Model parameter optimization (eps = 1.000000) [00:40:20 -212925.144403] SLOW spr round 1 (radius: 5) [00:42:54 -212871.184439] SLOW spr round 2 (radius: 5) [00:45:29 -212868.871845] SLOW spr round 3 (radius: 5) [00:48:04 -212868.869245] SLOW spr round 4 (radius: 10) [00:50:55 -212866.389642] SLOW spr round 5 (radius: 5) [00:54:08 -212866.389525] SLOW spr round 6 (radius: 10) [00:57:07 -212866.389499] SLOW spr round 7 (radius: 15) [01:01:01 -212863.514633] SLOW spr round 8 (radius: 5) [01:03:26] [worker #2] ML tree search #3, logLikelihood: -212872.422260 [01:04:29 -212863.514599] SLOW spr round 9 (radius: 10) [01:07:39 -212863.514599] SLOW spr round 10 (radius: 15) [01:11:31 -212863.514599] SLOW spr round 11 (radius: 20) [01:17:19 -212863.514598] SLOW spr round 12 (radius: 25) [01:25:13] [worker #1] ML tree search #2, logLikelihood: -212862.239831 [01:25:41 -212863.514598] Model parameter optimization (eps = 0.100000) [01:25:52] [worker #0] ML tree search #1, logLikelihood: -212863.274065 [01:25:52 -1267316.251842] Initial branch length optimization [01:25:59 -1012411.790729] Model parameter optimization (eps = 10.000000) [01:26:51 -1009971.396904] AUTODETECT spr round 1 (radius: 5) [01:30:28 -596869.999713] AUTODETECT spr round 2 (radius: 10) [01:34:09 -416928.110396] AUTODETECT spr round 3 (radius: 15) [01:37:58 -319251.139025] AUTODETECT spr round 4 (radius: 20) [01:42:18 -263027.597336] AUTODETECT spr round 5 (radius: 25) [01:47:20 -255390.786431] SPR radius for FAST iterations: 25 (autodetect) [01:47:20 -255390.786431] Model parameter optimization (eps = 3.000000) [01:47:41 -255371.255675] FAST spr round 1 (radius: 25) [01:51:14 -215154.155984] FAST spr round 2 (radius: 25) [01:53:51 -213027.943391] FAST spr round 3 (radius: 25) [01:56:10 -212940.753496] FAST spr round 4 (radius: 25) [01:58:17 -212922.755671] FAST spr round 5 (radius: 25) [02:00:13 -212922.755617] Model parameter optimization (eps = 1.000000) [02:00:25 -212920.037358] SLOW spr round 1 (radius: 5) [02:03:00 -212888.383288] SLOW spr round 2 (radius: 5) [02:05:34 -212881.225565] SLOW spr round 3 (radius: 5) [02:08:02 -212881.225172] SLOW spr round 4 (radius: 10) [02:10:47 -212878.634689] SLOW spr round 5 (radius: 5) [02:13:55 -212878.634650] SLOW spr round 6 (radius: 10) [02:15:50] [worker #2] ML tree search #6, logLikelihood: -212863.381104 [02:16:54 -212878.634649] SLOW spr round 7 (radius: 15) [02:20:44 -212878.634637] SLOW spr round 8 (radius: 20) [02:26:27 -212878.634636] SLOW spr round 9 (radius: 25) [02:33:59] [worker #1] ML tree search #5, logLikelihood: -212864.493925 [02:35:06 -212878.634635] Model parameter optimization (eps = 0.100000) [02:35:12] [worker #0] ML tree search #4, logLikelihood: -212878.598983 [02:35:12 -1284447.747786] Initial branch length optimization [02:35:20 -1021257.980299] Model parameter optimization (eps = 10.000000) [02:36:13 -1018891.199065] AUTODETECT spr round 1 (radius: 5) [02:39:44 -601717.643086] AUTODETECT spr round 2 (radius: 10) [02:43:24 -406341.330225] AUTODETECT spr round 3 (radius: 15) [02:47:11 -316478.351697] AUTODETECT spr round 4 (radius: 20) [02:51:30 -268033.405526] AUTODETECT spr round 5 (radius: 25) [02:56:39 -254346.504794] SPR radius for FAST iterations: 25 (autodetect) [02:56:39 -254346.504794] Model parameter optimization (eps = 3.000000) [02:57:00 -254298.316617] FAST spr round 1 (radius: 25) [03:00:17 -214449.831585] FAST spr round 2 (radius: 25) [03:02:57 -213059.121544] FAST spr round 3 (radius: 25) [03:05:17 -212917.427403] FAST spr round 4 (radius: 25) [03:07:22 -212900.702567] FAST spr round 5 (radius: 25) [03:09:18 -212900.702502] Model parameter optimization (eps = 1.000000) [03:09:32 -212899.496059] SLOW spr round 1 (radius: 5) [03:12:05 -212865.138534] SLOW spr round 2 (radius: 5) [03:14:42 -212862.357770] SLOW spr round 3 (radius: 5) [03:17:20 -212862.355870] SLOW spr round 4 (radius: 10) [03:20:14 -212860.199452] SLOW spr round 5 (radius: 5) [03:23:31 -212857.555438] SLOW spr round 6 (radius: 5) [03:26:19 -212857.555349] SLOW spr round 7 (radius: 10) [03:29:12 -212857.555291] SLOW spr round 8 (radius: 15) [03:29:45] [worker #2] ML tree search #9, logLikelihood: -212855.212901 [03:33:14 -212857.555288] SLOW spr round 9 (radius: 20) [03:39:15 -212857.555288] SLOW spr round 10 (radius: 25) [03:40:05] [worker #1] ML tree search #8, logLikelihood: -212869.750224 [03:48:26 -212857.555288] Model parameter optimization (eps = 0.100000) [03:48:36] [worker #0] ML tree search #7, logLikelihood: -212857.369455 [03:48:36 -1273224.955433] Initial branch length optimization [03:48:43 -1014228.893020] Model parameter optimization (eps = 10.000000) [03:49:36 -1011752.314091] AUTODETECT spr round 1 (radius: 5) [03:53:12 -612285.039406] AUTODETECT spr round 2 (radius: 10) [03:56:54 -427584.262301] AUTODETECT spr round 3 (radius: 15) [04:00:47 -349884.052644] AUTODETECT spr round 4 (radius: 20) [04:05:07 -299715.598204] AUTODETECT spr round 5 (radius: 25) [04:10:05 -263934.182983] SPR radius for FAST iterations: 25 (autodetect) [04:10:05 -263934.182983] Model parameter optimization (eps = 3.000000) [04:10:29 -263912.142684] FAST spr round 1 (radius: 25) [04:13:53 -216745.560698] FAST spr round 2 (radius: 25) [04:16:30 -213993.117141] FAST spr round 3 (radius: 25) [04:18:54 -212940.747264] FAST spr round 4 (radius: 25) [04:21:25 -212921.307296] FAST spr round 5 (radius: 25) [04:23:43 -212915.121308] FAST spr round 6 (radius: 25) [04:26:01 -212915.121287] Model parameter optimization (eps = 1.000000) [04:26:16 -212912.869940] SLOW spr round 1 (radius: 5) [04:29:33 -212877.565846] SLOW spr round 2 (radius: 5) [04:32:58 -212877.043021] SLOW spr round 3 (radius: 5) [04:36:23 -212876.073812] SLOW spr round 4 (radius: 5) [04:36:23] [worker #2] ML tree search #12, logLikelihood: -212860.439258 [04:39:25 -212876.072882] SLOW spr round 5 (radius: 10) [04:42:45 -212876.072874] SLOW spr round 6 (radius: 15) [04:47:42 -212873.764760] SLOW spr round 7 (radius: 5) [04:51:53 -212873.764755] SLOW spr round 8 (radius: 10) [04:53:04] [worker #1] ML tree search #11, logLikelihood: -212870.146351 [04:55:50 -212873.764742] SLOW spr round 9 (radius: 15) [05:00:37 -212873.764730] SLOW spr round 10 (radius: 20) [05:07:44 -212873.764730] SLOW spr round 11 (radius: 25) [05:18:06 -212873.764730] Model parameter optimization (eps = 0.100000) [05:18:21] [worker #0] ML tree search #10, logLikelihood: -212873.259827 [05:18:21 -1274252.683994] Initial branch length optimization [05:18:31 -1020164.314993] Model parameter optimization (eps = 10.000000) [05:19:34 -1017692.988521] AUTODETECT spr round 1 (radius: 5) [05:23:48 -596106.920820] AUTODETECT spr round 2 (radius: 10) [05:28:07 -429243.745214] AUTODETECT spr round 3 (radius: 15) [05:32:33 -335731.367959] AUTODETECT spr round 4 (radius: 20) [05:37:40 -283103.202994] AUTODETECT spr round 5 (radius: 25) [05:43:43 -269775.497633] SPR radius for FAST iterations: 25 (autodetect) [05:43:43 -269775.497633] Model parameter optimization (eps = 3.000000) [05:44:02 -269748.749243] FAST spr round 1 (radius: 25) [05:48:40 -215484.832375] FAST spr round 2 (radius: 25) [05:52:02 -213054.704629] FAST spr round 3 (radius: 25) [05:54:50 -212925.843386] FAST spr round 4 (radius: 25) [05:56:38] [worker #2] ML tree search #15, logLikelihood: -212868.732474 [05:57:23 -212909.127169] FAST spr round 5 (radius: 25) [05:59:45 -212909.126887] Model parameter optimization (eps = 1.000000) [06:00:02 -212907.544452] SLOW spr round 1 (radius: 5) [06:03:06 -212861.716082] SLOW spr round 2 (radius: 5) [06:06:10 -212859.763237] SLOW spr round 3 (radius: 5) [06:09:21 -212858.806036] SLOW spr round 4 (radius: 5) [06:12:04] [worker #1] ML tree search #14, logLikelihood: -212879.291426 [06:12:27 -212858.805638] SLOW spr round 5 (radius: 10) [06:15:56 -212858.536652] SLOW spr round 6 (radius: 5) [06:19:46 -212858.536650] SLOW spr round 7 (radius: 10) [06:23:26 -212858.536650] SLOW spr round 8 (radius: 15) [06:28:06 -212858.536650] SLOW spr round 9 (radius: 20) [06:35:07 -212858.536650] SLOW spr round 10 (radius: 25) [06:45:28 -212858.536650] Model parameter optimization (eps = 0.100000) [06:45:45] [worker #0] ML tree search #13, logLikelihood: -212858.414654 [06:45:45 -1280483.789715] Initial branch length optimization [06:45:55 -1014315.054074] Model parameter optimization (eps = 10.000000) [06:47:01 -1011970.226621] AUTODETECT spr round 1 (radius: 5) [06:51:22 -616993.575502] AUTODETECT spr round 2 (radius: 10) [06:55:52 -405639.038724] AUTODETECT spr round 3 (radius: 15) [07:00:22 -320971.702119] AUTODETECT spr round 4 (radius: 20) [07:05:49 -270115.978041] AUTODETECT spr round 5 (radius: 25) [07:11:47 -258751.627088] SPR radius for FAST iterations: 25 (autodetect) [07:11:47 -258751.627088] Model parameter optimization (eps = 3.000000) [07:12:11 -258716.798751] FAST spr round 1 (radius: 25) [07:16:04] [worker #2] ML tree search #18, logLikelihood: -212866.156846 [07:16:20 -215356.892608] FAST spr round 2 (radius: 25) [07:19:17 -213018.527001] FAST spr round 3 (radius: 25) [07:21:55 -212939.418465] FAST spr round 4 (radius: 25) [07:24:29 -212929.366168] FAST spr round 5 (radius: 25) [07:26:46 -212929.365988] Model parameter optimization (eps = 1.000000) [07:27:02 -212926.732939] SLOW spr round 1 (radius: 5) [07:30:02 -212872.175763] SLOW spr round 2 (radius: 5) [07:33:04 -212869.147164] SLOW spr round 3 (radius: 5) [07:36:00 -212866.689464] SLOW spr round 4 (radius: 5) [07:38:55 -212866.689372] SLOW spr round 5 (radius: 10) [07:42:19 -212856.860712] SLOW spr round 6 (radius: 5) [07:46:06 -212855.805670] SLOW spr round 7 (radius: 5) [07:47:40] [worker #1] ML tree search #17, logLikelihood: -212867.952713 [07:49:26 -212854.164257] SLOW spr round 8 (radius: 5) [07:52:31 -212854.164255] SLOW spr round 9 (radius: 10) [07:55:48 -212854.164254] SLOW spr round 10 (radius: 15) [08:00:29 -212854.164253] SLOW spr round 11 (radius: 20) [08:07:07 -212854.164253] SLOW spr round 12 (radius: 25) [08:17:16 -212854.164252] Model parameter optimization (eps = 0.100000) [08:17:31] [worker #0] ML tree search #16, logLikelihood: -212853.721027 [08:17:31 -1268108.395421] Initial branch length optimization [08:17:39 -1004073.081260] Model parameter optimization (eps = 10.000000) [08:18:50 -1001670.197326] AUTODETECT spr round 1 (radius: 5) [08:23:11 -611649.642922] AUTODETECT spr round 2 (radius: 10) [08:27:26 -418183.318162] AUTODETECT spr round 3 (radius: 15) [08:31:51 -329561.249338] AUTODETECT spr round 4 (radius: 20) [08:37:17 -297768.600363] AUTODETECT spr round 5 (radius: 25) [08:43:01 -266622.005060] SPR radius for FAST iterations: 25 (autodetect) [08:43:01 -266622.005060] Model parameter optimization (eps = 3.000000) [08:43:25 -266597.794297] FAST spr round 1 (radius: 25) [08:48:04 -221749.684727] FAST spr round 2 (radius: 25) [08:51:01 -219498.764374] FAST spr round 3 (radius: 25) [08:53:41 -214614.664379] FAST spr round 4 (radius: 25) [08:56:38 -212983.991135] FAST spr round 5 (radius: 25) [08:59:09 -212898.223479] FAST spr round 6 (radius: 25) [09:01:14 -212892.302499] FAST spr round 7 (radius: 25) [09:03:07 -212892.301975] Model parameter optimization (eps = 1.000000) [09:03:19 -212890.948810] SLOW spr round 1 (radius: 5) [09:05:49 -212864.813519] SLOW spr round 2 (radius: 5) [09:08:18 -212864.812343] SLOW spr round 3 (radius: 10) [09:11:02 -212864.812337] SLOW spr round 4 (radius: 15) [09:15:06 -212864.811836] SLOW spr round 5 (radius: 20) [09:20:20] [worker #1] ML tree search #20, logLikelihood: -212857.611784 [09:20:49 -212864.811836] SLOW spr round 6 (radius: 25) [09:29:33 -212864.811836] Model parameter optimization (eps = 0.100000) [09:29:38] [worker #0] ML tree search #19, logLikelihood: -212864.781256 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.243398,0.271503) (0.216637,0.418478) (0.297885,1.052744) (0.242080,2.187962) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -212853.721027 AIC score: 429717.442053 / AICc score: 8473777.442053 / BIC score: 439250.423273 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=858). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 236 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14839/3_mltree/Q14839.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14839/3_mltree/Q14839.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14839/3_mltree/Q14839.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14839/3_mltree/Q14839.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14839/3_mltree/Q14839.raxml.log Analysis started: 15-Jul-2021 07:47:27 / finished: 15-Jul-2021 17:17:07 Elapsed time: 34179.164 seconds Consumed energy: 3099.875 Wh (= 15 km in an electric car, or 77 km with an e-scooter!)