RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 12-Jul-2021 17:53:50 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/2_msa/Q14738_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/3_mltree/Q14738.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/4_raxmlng_ancestral/Q14738 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626101630 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/2_msa/Q14738_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 602 sites WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_G1NLC0_G1NLC0_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_G1SJX1_G1SJX1_RABIT_9986 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_F6V7D9_F6V7D9_CANLF_9615 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_W5QJ24_W5QJ24_SHEEP_9940 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and sp_Q16537_2A5E_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_F7GWP9_F7GWP9_MACMU_9544 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_K7FE81_K7FE81_PELSI_13735 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_G3T8X8_G3T8X8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_H0ZRV4_H0ZRV4_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_G1LBY2_G1LBY2_AILME_9646 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and sp_A4FV68_2A5E_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_M3WK80_M3WK80_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_U3JL33_U3JL33_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_U3J211_U3J211_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A151M1Y8_A0A151M1Y8_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A1S3A8A5_A0A1S3A8A5_ERIEU_9365 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A1U7U1D5_A0A1U7U1D5_TARSY_1868482 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A3Q0G248_A0A3Q0G248_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A218UYD8_A0A218UYD8_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A2K6CYV1_A0A2K6CYV1_MACNE_9545 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A2U4ACB5_A0A2U4ACB5_TURTR_9739 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A2U3ZPT1_A0A2U3ZPT1_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A2U3YNJ5_A0A2U3YNJ5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A2Y9DAE0_A0A2Y9DAE0_TRIMA_127582 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A2Y9N3Y5_A0A2Y9N3Y5_DELLE_9749 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A2Y9TIM1_A0A2Y9TIM1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A384CWT9_A0A384CWT9_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q61151_2A5E_MOUSE_10090 and tr_A0A0G2JTA1_A0A0G2JTA1_RAT_10116 are exactly identical! WARNING: Sequences sp_Q61151_2A5E_MOUSE_10090 and tr_I3MWF3_I3MWF3_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q61151_2A5E_MOUSE_10090 and tr_A0A3Q0CUN6_A0A3Q0CUN6_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3Y5D1_M3Y5D1_MUSPF_9669 and tr_A0A2Y9KYK9_A0A2Y9KYK9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3GXD4_A0A2I3GXD4_NOMLE_61853 and tr_A0A2I2YD04_A0A2I2YD04_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GXD4_A0A2I3GXD4_NOMLE_61853 and tr_H2N3S2_H2N3S2_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3GXD4_A0A2I3GXD4_NOMLE_61853 and tr_K7CXU1_K7CXU1_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GXD4_A0A2I3GXD4_NOMLE_61853 and sp_Q15172_2A5A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GXD4_A0A2I3GXD4_NOMLE_61853 and tr_A0A2R8ZLU4_A0A2R8ZLU4_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QWE9_G3QWE9_GORGO_9595 and tr_H2QT14_H2QT14_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QWE9_G3QWE9_GORGO_9595 and sp_Q14738_2A5D_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QWE9_G3QWE9_GORGO_9595 and tr_A0A0D9RGJ8_A0A0D9RGJ8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QWE9_G3QWE9_GORGO_9595 and tr_A0A2R9A724_A0A2R9A724_PANPA_9597 are exactly identical! WARNING: Sequences tr_G2WU04_G2WU04_VERDV_498257 and tr_C9SFF1_C9SFF1_VERA1_526221 are exactly identical! WARNING: Sequences tr_G2WU04_G2WU04_VERDV_498257 and tr_A0A0G4ME83_A0A0G4ME83_9PEZI_100787 are exactly identical! WARNING: Sequences tr_Q7S7P2_Q7S7P2_NEUCR_367110 and tr_G4UDE8_G4UDE8_NEUT9_510952 are exactly identical! WARNING: Sequences tr_B5DWV0_B5DWV0_DROPS_46245 and tr_B4G2L3_B4G2L3_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A179UDA2_A0A179UDA2_BLAGS_559298 and tr_A0A179U041_A0A179U041_AJEDR_559297 are exactly identical! WARNING: Sequences tr_F1P714_F1P714_CANLF_9615 and tr_A0A2U3ZNM0_A0A2U3ZNM0_ODORO_9708 are exactly identical! WARNING: Sequences tr_W5PM65_W5PM65_SHEEP_9940 and tr_A2VDZ0_A2VDZ0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_J4KM29_J4KM29_BEAB2_655819 and tr_A0A0A2VTY9_A0A0A2VTY9_BEABA_1245745 are exactly identical! WARNING: Sequences tr_A0A088AB82_A0A088AB82_APIME_7460 and tr_A0A2A3ERJ7_A0A2A3ERJ7_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NL58_A0A158NL58_ATTCE_12957 and tr_A0A151XBH2_A0A151XBH2_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NL58_A0A158NL58_ATTCE_12957 and tr_A0A151JSW2_A0A151JSW2_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A1D5Q6M6_A0A1D5Q6M6_MACMU_9544 and tr_G7NUM0_G7NUM0_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5Q6M6_A0A1D5Q6M6_MACMU_9544 and tr_A0A096N8T4_A0A096N8T4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5Q6M6_A0A1D5Q6M6_MACMU_9544 and tr_A0A0D9RS90_A0A0D9RS90_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5Q6M6_A0A1D5Q6M6_MACMU_9544 and tr_A0A2K5P6U6_A0A2K5P6U6_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5Q6M6_A0A1D5Q6M6_MACMU_9544 and tr_A0A2K6E3C0_A0A2K6E3C0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5R6N7_A0A1D5R6N7_MACMU_9544 and tr_A0A2K5XPS5_A0A2K5XPS5_MANLE_9568 are exactly identical! WARNING: Sequences tr_G7XBB5_G7XBB5_ASPKW_1033177 and tr_A0A317UZR4_A0A317UZR4_9EURO_1448314 are exactly identical! WARNING: Sequences tr_F4P988_F4P988_BATDJ_684364 and tr_A0A177WWF7_A0A177WWF7_BATDE_403673 are exactly identical! WARNING: Sequences tr_G2Y496_G2Y496_BOTF4_999810 and tr_M7UYV0_M7UYV0_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_D2H4S3_D2H4S3_AILME_9646 and tr_A0A2U3VGX6_A0A2U3VGX6_ODORO_9708 are exactly identical! WARNING: Sequences tr_D2H4S3_D2H4S3_AILME_9646 and tr_A0A2Y9JPG9_A0A2Y9JPG9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_D2H4S3_D2H4S3_AILME_9646 and tr_A0A384DKA6_A0A384DKA6_URSMA_29073 are exactly identical! WARNING: Sequences tr_W7M5P0_W7M5P0_GIBM7_334819 and tr_S0DWU1_S0DWU1_GIBF5_1279085 are exactly identical! WARNING: Sequences tr_W7M5P0_W7M5P0_GIBM7_334819 and tr_A0A2K0WRM6_A0A2K0WRM6_GIBNY_42673 are exactly identical! WARNING: Sequences tr_W7M5P0_W7M5P0_GIBM7_334819 and tr_A0A365MK37_A0A365MK37_GIBIN_948311 are exactly identical! WARNING: Sequences tr_U3KD64_U3KD64_FICAL_59894 and tr_A0A218V3Y5_A0A218V3Y5_9PASE_299123 are exactly identical! WARNING: Sequences tr_N4UBP2_N4UBP2_FUSC1_1229664 and tr_X0D116_X0D116_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_N4UBP2_N4UBP2_FUSC1_1229664 and tr_A0A2H3T9N5_A0A2H3T9N5_FUSOX_5507 are exactly identical! WARNING: Sequences tr_N4UBP2_N4UBP2_FUSC1_1229664 and tr_A0A2H3HTI7_A0A2H3HTI7_FUSOX_327505 are exactly identical! WARNING: Sequences tr_M2SJE4_M2SJE4_COCSN_665912 and tr_M2U1H2_M2U1H2_COCH5_701091 are exactly identical! WARNING: Sequences tr_M2SJE4_M2SJE4_COCSN_665912 and tr_W6YBR9_W6YBR9_COCCA_930089 are exactly identical! WARNING: Sequences tr_M2SJE4_M2SJE4_COCSN_665912 and tr_W6YXY2_W6YXY2_COCMI_930090 are exactly identical! WARNING: Sequences tr_V2XJM7_V2XJM7_MONRO_1381753 and tr_A0A0W0FU14_A0A0W0FU14_9AGAR_221103 are exactly identical! WARNING: Sequences tr_A0A015JQY8_A0A015JQY8_9GLOM_1432141 and tr_A0A2H5U1D5_A0A2H5U1D5_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A084QG23_A0A084QG23_STAC4_1283841 and tr_A0A084RUL0_A0A084RUL0_STACH_1283842 are exactly identical! WARNING: Sequences tr_A0A096NI83_A0A096NI83_PAPAN_9555 and tr_A0A2K6CB27_A0A2K6CB27_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0D9RD40_A0A0D9RD40_CHLSB_60711 and tr_A0A2K5LQ57_A0A2K5LQ57_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A151MUF1_A0A151MUF1_ALLMI_8496 and tr_A0A1U7SCJ2_A0A1U7SCJ2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091EDX6_A0A091EDX6_CORBR_85066 and tr_A0A093PLJ2_A0A093PLJ2_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EXZ2_A0A091EXZ2_CORBR_85066 and tr_A0A093Q1M8_A0A093Q1M8_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EXZ2_A0A091EXZ2_CORBR_85066 and tr_A0A093HBR2_A0A093HBR2_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091EXZ2_A0A091EXZ2_CORBR_85066 and tr_A0A091W6E5_A0A091W6E5_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091EXZ2_A0A091EXZ2_CORBR_85066 and tr_A0A091G8T1_A0A091G8T1_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091EXZ2_A0A091EXZ2_CORBR_85066 and tr_A0A0A0AWC9_A0A0A0AWC9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091EXZ2_A0A091EXZ2_CORBR_85066 and tr_A0A093G517_A0A093G517_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091EXZ2_A0A091EXZ2_CORBR_85066 and tr_A0A091J3V9_A0A091J3V9_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091WA68_A0A091WA68_OPIHO_30419 and tr_A0A091G179_A0A091G179_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091WA68_A0A091WA68_OPIHO_30419 and tr_A0A0A0AW47_A0A0A0AW47_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091WA68_A0A091WA68_OPIHO_30419 and tr_A0A091IBM4_A0A091IBM4_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A2I0MPK9_A0A2I0MPK9_COLLI_8932 and tr_A0A1V4KA45_A0A1V4KA45_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0MPV9_A0A2I0MPV9_COLLI_8932 and tr_A0A226PG02_A0A226PG02_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A0V0X951_A0A0V0X951_9BILA_92179 and tr_A0A0V1NRN2_A0A0V1NRN2_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A135V9X5_A0A135V9X5_9PEZI_1209931 and tr_A0A1G4BMY4_A0A1G4BMY4_9PEZI_1209926 are exactly identical! WARNING: Sequences tr_A0A0E0SNM6_A0A0E0SNM6_GIBZE_229533 and tr_A0A2T4GNE5_A0A2T4GNE5_FUSCU_5516 are exactly identical! WARNING: Sequences tr_A0A1S3HSW8_A0A1S3HSW8_LINUN_7574 and tr_A0A1S3HSX9_A0A1S3HSX9_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1B8CHU3_A0A1B8CHU3_9PEZI_1622147 and tr_A0A1B8EZV2_A0A1B8EZV2_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_A0A2K5N7S8_A0A2K5N7S8_CERAT_9531 and tr_A0A2K5Z3B5_A0A2K5Z3B5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2S7NMB4_A0A2S7NMB4_9HELO_2070414 and tr_A0A2S7QT67_A0A2S7QT67_9HELO_2070412 are exactly identical! WARNING: Sequences tr_A0A2U4CRM2_A0A2U4CRM2_TURTR_9739 and tr_A0A2Y9PQI3_A0A2Y9PQI3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A319BX63_A0A319BX63_9EURO_1448315 and tr_A0A2V5IGU0_A0A2V5IGU0_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A319BX63_A0A319BX63_9EURO_1448315 and tr_A0A2V5GXE6_A0A2V5GXE6_9EURO_1450538 are exactly identical! WARNING: Duplicate sequences found: 102 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/4_raxmlng_ancestral/Q14738.raxml.reduced.phy Alignment comprises 1 partitions and 602 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 602 Gaps: 14.56 % Invariant sites: 5.48 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/4_raxmlng_ancestral/Q14738.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/3_mltree/Q14738.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 151 / 12080 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -132585.892133 [00:00:00 -132585.892133] Initial branch length optimization [00:00:01 -119991.904961] Model parameter optimization (eps = 0.100000) [00:00:43] Tree #1, final logLikelihood: -119689.050262 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.274332,0.185400) (0.294846,0.302516) (0.172079,1.024216) (0.258743,2.642374) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/4_raxmlng_ancestral/Q14738.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/4_raxmlng_ancestral/Q14738.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/4_raxmlng_ancestral/Q14738.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/4_raxmlng_ancestral/Q14738.raxml.log Analysis started: 12-Jul-2021 17:53:50 / finished: 12-Jul-2021 17:54:39 Elapsed time: 49.092 seconds Consumed energy: 3.787 Wh