RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 07-Jul-2021 05:10:31 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/2_msa/Q14738_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/3_mltree/Q14738 --seed 2 --threads 6 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (6 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/2_msa/Q14738_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 429 sites WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_M3Y5D1_M3Y5D1_MUSPF_9669 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_G1PG42_G1PG42_MYOLU_59463 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_G1NLC0_G1NLC0_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_G1SJX1_G1SJX1_RABIT_9986 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_F6V7D9_F6V7D9_CANLF_9615 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_W5QJ24_W5QJ24_SHEEP_9940 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and sp_Q16537_2A5E_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_F7GWP9_F7GWP9_MACMU_9544 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_K7FE81_K7FE81_PELSI_13735 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_G3T8X8_G3T8X8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_H0ZRV4_H0ZRV4_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_G1LBY2_G1LBY2_AILME_9646 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and sp_A4FV68_2A5E_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_M3WK80_M3WK80_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_U3JL33_U3JL33_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_U3J211_U3J211_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A151M1Y8_A0A151M1Y8_ALLMI_8496 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A1S3A8A5_A0A1S3A8A5_ERIEU_9365 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A1U7U1D5_A0A1U7U1D5_TARSY_1868482 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A3Q0G248_A0A3Q0G248_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A218UYD8_A0A218UYD8_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A2K6CYV1_A0A2K6CYV1_MACNE_9545 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A2U4ACB5_A0A2U4ACB5_TURTR_9739 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A2U3ZPT1_A0A2U3ZPT1_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A2U3YNJ5_A0A2U3YNJ5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A2Y9DAE0_A0A2Y9DAE0_TRIMA_127582 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A2Y9KYK9_A0A2Y9KYK9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A2Y9N3Y5_A0A2Y9N3Y5_DELLE_9749 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A2Y9TIM1_A0A2Y9TIM1_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F1NLM6_F1NLM6_CHICK_9031 and tr_A0A384CWT9_A0A384CWT9_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q61151_2A5E_MOUSE_10090 and tr_A0A0G2JTA1_A0A0G2JTA1_RAT_10116 are exactly identical! WARNING: Sequences sp_Q61151_2A5E_MOUSE_10090 and tr_I3MWF3_I3MWF3_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q61151_2A5E_MOUSE_10090 and tr_A0A3Q0CUN6_A0A3Q0CUN6_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3XUT6_M3XUT6_MUSPF_9669 and tr_A0A2U3Y8V6_A0A2U3Y8V6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YM33_M3YM33_MUSPF_9669 and tr_F1RQR5_F1RQR5_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YM33_M3YM33_MUSPF_9669 and tr_D2H4S3_D2H4S3_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YM33_M3YM33_MUSPF_9669 and tr_A0A337S898_A0A337S898_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YM33_M3YM33_MUSPF_9669 and tr_A0A2U3VGX6_A0A2U3VGX6_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YM33_M3YM33_MUSPF_9669 and tr_A0A2Y9JPG9_A0A2Y9JPG9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YM33_M3YM33_MUSPF_9669 and tr_A0A384DKA6_A0A384DKA6_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_G1QXA3_G1QXA3_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_G3HR69_G3HR69_CRIGR_10029 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_G3QWE9_G3QWE9_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_H2PJ35_H2PJ35_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_G1SFN5_G1SFN5_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and sp_Q28653_2A5D_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_F1P714_F1P714_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_H2QT14_H2QT14_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_F7CQH1_F7CQH1_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_F1MAA3_F1MAA3_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_I3N7J4_I3N7J4_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_H0X7I4_H0X7I4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_H0VI33_H0VI33_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and sp_Q14738_2A5D_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A1D5RL09_A0A1D5RL09_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_G3UMW6_G3UMW6_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_F7I5R6_F7I5R6_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A287BJQ6_A0A287BJQ6_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_G1M213_G1M213_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_G7P3Y8_G7P3Y8_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_F1N1S8_F1N1S8_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_L5JLR3_L5JLR3_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A2I2USE8_A0A2I2USE8_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A096NI83_A0A096NI83_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A091DYM5_A0A091DYM5_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A0D9RGJ8_A0A0D9RGJ8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A1S3A7A2_A0A1S3A7A2_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A1S3FEC3_A0A1S3FEC3_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A1U7UGA4_A0A1U7UGA4_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A2K5N7S8_A0A2K5N7S8_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A2K6CB27_A0A2K6CB27_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A2K5Z3B5_A0A2K5Z3B5_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A2R9A724_A0A2R9A724_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A2U3ZNM0_A0A2U3ZNM0_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A2U3XZ56_A0A2U3XZ56_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A2Y9DR25_A0A2Y9DR25_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A2Y9JF95_A0A2Y9JF95_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YP60_M3YP60_MUSPF_9669 and tr_A0A384C5M7_A0A384C5M7_URSMA_29073 are exactly identical! WARNING: Sequences tr_B6HJU7_B6HJU7_PENRW_500485 and tr_A0A1V6Y4I2_A0A1V6Y4I2_PENNA_60175 are exactly identical! WARNING: Sequences tr_Q9VB23_Q9VB23_DROME_7227 and tr_B5DWV0_B5DWV0_DROPS_46245 are exactly identical! WARNING: Sequences tr_Q9VB23_Q9VB23_DROME_7227 and tr_B4NAQ2_B4NAQ2_DROWI_7260 are exactly identical! WARNING: Sequences tr_Q9VB23_Q9VB23_DROME_7227 and tr_B4G2L3_B4G2L3_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A2I3G1K4_A0A2I3G1K4_NOMLE_61853 and tr_A0A2I2ZE44_A0A2I2ZE44_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3G1K4_A0A2I3G1K4_NOMLE_61853 and tr_G1U359_G1U359_RABIT_9986 are exactly identical! WARNING: Sequences tr_A0A2I3G1K4_A0A2I3G1K4_NOMLE_61853 and tr_H2Q8X8_H2Q8X8_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3G1K4_A0A2I3G1K4_NOMLE_61853 and tr_A0A1D5R6N7_A0A1D5R6N7_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3G1K4_A0A2I3G1K4_NOMLE_61853 and tr_A0A0D9RD40_A0A0D9RD40_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3G1K4_A0A2I3G1K4_NOMLE_61853 and tr_A0A2K5LQ57_A0A2K5LQ57_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3G1K4_A0A2I3G1K4_NOMLE_61853 and tr_A0A2K5XPS5_A0A2K5XPS5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3G1K4_A0A2I3G1K4_NOMLE_61853 and tr_A0A2R9BMF8_A0A2R9BMF8_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3G1K4_A0A2I3G1K4_NOMLE_61853 and tr_A0A2Y9NAB0_A0A2Y9NAB0_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2I3G1K4_A0A2I3G1K4_NOMLE_61853 and tr_A0A383ZUV3_A0A383ZUV3_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2I3GXD4_A0A2I3GXD4_NOMLE_61853 and tr_A0A2I2YD04_A0A2I2YD04_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GXD4_A0A2I3GXD4_NOMLE_61853 and tr_H2N3S2_H2N3S2_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3GXD4_A0A2I3GXD4_NOMLE_61853 and tr_K7CXU1_K7CXU1_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GXD4_A0A2I3GXD4_NOMLE_61853 and sp_Q15172_2A5A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GXD4_A0A2I3GXD4_NOMLE_61853 and tr_A0A2R8ZLU4_A0A2R8ZLU4_PANPA_9597 are exactly identical! WARNING: Sequences tr_B2WLN3_B2WLN3_PYRTR_426418 and tr_A0A2W1F2M6_A0A2W1F2M6_9PLEO_45151 are exactly identical! WARNING: Sequences tr_H2NMA2_H2NMA2_PONAB_9601 and sp_Q28651_2A5G_RABIT_9986 are exactly identical! WARNING: Sequences tr_H2NMA2_H2NMA2_PONAB_9601 and sp_Q13362_2A5G_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2NMA2_H2NMA2_PONAB_9601 and tr_L5JP65_L5JP65_PTEAL_9402 are exactly identical! WARNING: Sequences tr_H2NMA2_H2NMA2_PONAB_9601 and tr_A0A2U4CQS3_A0A2U4CQS3_TURTR_9739 are exactly identical! WARNING: Sequences tr_H2NMA2_H2NMA2_PONAB_9601 and tr_A0A2Y9DLI2_A0A2Y9DLI2_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G3JP31_G3JP31_CORMM_983644 and tr_A0A168AZ23_A0A168AZ23_CORDF_1081108 are exactly identical! WARNING: Sequences tr_G2WU04_G2WU04_VERDV_498257 and tr_C9SFF1_C9SFF1_VERA1_526221 are exactly identical! WARNING: Sequences tr_G2WU04_G2WU04_VERDV_498257 and tr_A0A0G4L7S4_A0A0G4L7S4_9PEZI_100787 are exactly identical! WARNING: Sequences tr_G2WU04_G2WU04_VERDV_498257 and tr_A0A0G4ME83_A0A0G4ME83_9PEZI_100787 are exactly identical! WARNING: Sequences tr_G1MX51_G1MX51_MELGA_9103 and tr_U3IYP9_U3IYP9_ANAPL_8839 are exactly identical! WARNING: Sequences tr_G1MX51_G1MX51_MELGA_9103 and tr_A0A1V4KBA9_A0A1V4KBA9_PATFA_372326 are exactly identical! WARNING: Sequences tr_G1NKU8_G1NKU8_MELGA_9103 and tr_H0ZRC7_H0ZRC7_TAEGU_59729 are exactly identical! WARNING: Sequences tr_G1NKU8_G1NKU8_MELGA_9103 and tr_U3JJ70_U3JJ70_FICAL_59894 are exactly identical! WARNING: Sequences tr_G1NKU8_G1NKU8_MELGA_9103 and tr_A0A091EDX6_A0A091EDX6_CORBR_85066 are exactly identical! WARNING: Sequences tr_G1NKU8_G1NKU8_MELGA_9103 and tr_A0A091JRR3_A0A091JRR3_EGRGA_188379 are exactly identical! WARNING: Sequences tr_G1NKU8_G1NKU8_MELGA_9103 and tr_A0A093PLJ2_A0A093PLJ2_9PASS_328815 are exactly identical! WARNING: Sequences tr_G1NKU8_G1NKU8_MELGA_9103 and tr_A0A091WB59_A0A091WB59_NIPNI_128390 are exactly identical! WARNING: Sequences tr_G1NKU8_G1NKU8_MELGA_9103 and tr_A0A093HQ61_A0A093HQ61_STRCA_441894 are exactly identical! WARNING: Sequences tr_G1NKU8_G1NKU8_MELGA_9103 and tr_A0A091WA68_A0A091WA68_OPIHO_30419 are exactly identical! WARNING: Sequences tr_G1NKU8_G1NKU8_MELGA_9103 and tr_A0A091G179_A0A091G179_9AVES_55661 are exactly identical! WARNING: Sequences tr_G1NKU8_G1NKU8_MELGA_9103 and tr_A0A0A0AW47_A0A0A0AW47_CHAVO_50402 are exactly identical! WARNING: Sequences tr_G1NKU8_G1NKU8_MELGA_9103 and tr_A0A093I5H0_A0A093I5H0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_G1NKU8_G1NKU8_MELGA_9103 and tr_A0A091IBM4_A0A091IBM4_CALAN_9244 are exactly identical! WARNING: Sequences tr_G1NKU8_G1NKU8_MELGA_9103 and tr_A0A218V3H6_A0A218V3H6_9PASE_299123 are exactly identical! WARNING: Sequences tr_Q7S7P2_Q7S7P2_NEUCR_367110 and tr_G4UDE8_G4UDE8_NEUT9_510952 are exactly identical! WARNING: Sequences tr_B8NQ85_B8NQ85_ASPFN_332952 and tr_Q2UAI5_Q2UAI5_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8NQ85_B8NQ85_ASPFN_332952 and tr_A0A1S9DS13_A0A1S9DS13_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A179UDA2_A0A179UDA2_BLAGS_559298 and tr_A0A179U041_A0A179U041_AJEDR_559297 are exactly identical! WARNING: Sequences tr_A0A179UDA2_A0A179UDA2_BLAGS_559298 and tr_A0A2B7XMR2_A0A2B7XMR2_9EURO_2060905 are exactly identical! WARNING: Sequences tr_A0A179UDA2_A0A179UDA2_BLAGS_559298 and tr_A0A1J9QDD1_A0A1J9QDD1_9EURO_1658174 are exactly identical! WARNING: Sequences tr_F1P708_F1P708_CANLF_9615 and tr_A0A2U3ZAZ7_A0A2U3ZAZ7_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1PV54_F1PV54_CANLF_9615 and tr_Q08DP7_Q08DP7_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5NWN4_W5NWN4_SHEEP_9940 and tr_A4FV55_A4FV55_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PM65_W5PM65_SHEEP_9940 and tr_F1S2V7_F1S2V7_PIG_9823 are exactly identical! WARNING: Sequences tr_W5PM65_W5PM65_SHEEP_9940 and tr_A2VDZ0_A2VDZ0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PM65_W5PM65_SHEEP_9940 and tr_A0A2Y9TIQ2_A0A2Y9TIQ2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F9FDU1_F9FDU1_FUSOF_660025 and tr_W7M5P0_W7M5P0_GIBM7_334819 are exactly identical! WARNING: Sequences tr_F9FDU1_F9FDU1_FUSOF_660025 and tr_A0A0D2XUG3_A0A0D2XUG3_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9FDU1_F9FDU1_FUSOF_660025 and tr_S0DWU1_S0DWU1_GIBF5_1279085 are exactly identical! WARNING: Sequences tr_F9FDU1_F9FDU1_FUSOF_660025 and tr_N4UBP2_N4UBP2_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9FDU1_F9FDU1_FUSOF_660025 and tr_X0D116_X0D116_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FDU1_F9FDU1_FUSOF_660025 and tr_A0A0P7AHG0_A0A0P7AHG0_9HYPO_78410 are exactly identical! WARNING: Sequences tr_F9FDU1_F9FDU1_FUSOF_660025 and tr_A0A2H3T9N5_A0A2H3T9N5_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9FDU1_F9FDU1_FUSOF_660025 and tr_A0A2H3HTI7_A0A2H3HTI7_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F9FDU1_F9FDU1_FUSOF_660025 and tr_A0A2K0WRM6_A0A2K0WRM6_GIBNY_42673 are exactly identical! WARNING: Sequences tr_F9FDU1_F9FDU1_FUSOF_660025 and tr_A0A365MK37_A0A365MK37_GIBIN_948311 are exactly identical! WARNING: Sequences tr_E9CSP4_E9CSP4_COCPS_443226 and tr_A0A0J6Y978_A0A0J6Y978_COCIT_404692 are exactly identical! WARNING: Sequences tr_E9F1X3_E9F1X3_METRA_655844 and tr_E9E841_E9E841_METAQ_655827 are exactly identical! WARNING: Sequences tr_E9F1X3_E9F1X3_METRA_655844 and tr_A0A0B2WRL8_A0A0B2WRL8_METAS_1081103 are exactly identical! WARNING: Sequences tr_E9F1X3_E9F1X3_METRA_655844 and tr_A0A0B4H948_A0A0B4H948_METMF_1276143 are exactly identical! WARNING: Sequences tr_E9F1X3_E9F1X3_METRA_655844 and tr_A0A0D9P323_A0A0D9P323_METAN_1291518 are exactly identical! WARNING: Sequences tr_J4KM29_J4KM29_BEAB2_655819 and tr_A0A0A2VTY9_A0A0A2VTY9_BEABA_1245745 are exactly identical! WARNING: Sequences tr_J4KM29_J4KM29_BEAB2_655819 and tr_A0A167A152_A0A167A152_9HYPO_1081107 are exactly identical! WARNING: Sequences tr_J4KM29_J4KM29_BEAB2_655819 and tr_A0A2N6NPB0_A0A2N6NPB0_BEABA_176275 are exactly identical! WARNING: Sequences tr_A0A3B5Q8Y5_A0A3B5Q8Y5_XIPMA_8083 and tr_A0A087YAY5_A0A087YAY5_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088AB82_A0A088AB82_APIME_7460 and tr_A0A2A3ERJ7_A0A2A3ERJ7_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NL58_A0A158NL58_ATTCE_12957 and tr_A0A151XBH2_A0A151XBH2_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NL58_A0A158NL58_ATTCE_12957 and tr_A0A151JSW2_A0A151JSW2_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NL58_A0A158NL58_ATTCE_12957 and tr_A0A195BH84_A0A195BH84_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NL58_A0A158NL58_ATTCE_12957 and tr_A0A195F0S0_A0A195F0S0_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A287D4E6_A0A287D4E6_ICTTR_43179 and tr_A0A091CUV6_A0A091CUV6_FUKDA_885580 are exactly identical! WARNING: Sequences tr_H0WTV1_H0WTV1_OTOGA_30611 and tr_G3TTC8_G3TTC8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_G9P477_G9P477_HYPAI_452589 and tr_A0A2P4ZRB1_A0A2P4ZRB1_9HYPO_398673 are exactly identical! WARNING: Sequences tr_G9P477_G9P477_HYPAI_452589 and tr_A0A2T3ZC27_A0A2T3ZC27_9HYPO_1042311 are exactly identical! WARNING: Sequences tr_A1D056_A1D056_NEOFI_331117 and tr_A0A0S7E131_A0A0S7E131_9EURO_293939 are exactly identical! WARNING: Sequences tr_A0A1D5Q6M6_A0A1D5Q6M6_MACMU_9544 and tr_G7NUM0_G7NUM0_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5Q6M6_A0A1D5Q6M6_MACMU_9544 and tr_A0A096N8T4_A0A096N8T4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5Q6M6_A0A1D5Q6M6_MACMU_9544 and tr_A0A0D9RS90_A0A0D9RS90_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A1D5Q6M6_A0A1D5Q6M6_MACMU_9544 and tr_A0A2K5P6U6_A0A2K5P6U6_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5Q6M6_A0A1D5Q6M6_MACMU_9544 and tr_A0A2K6E3C0_A0A2K6E3C0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5Q6M6_A0A1D5Q6M6_MACMU_9544 and tr_A0A2K5XXV7_A0A2K5XXV7_MANLE_9568 are exactly identical! WARNING: Sequences tr_G7XBB5_G7XBB5_ASPKW_1033177 and tr_A0A317UZR4_A0A317UZR4_9EURO_1448314 are exactly identical! WARNING: Sequences tr_G9MGY1_G9MGY1_HYPVG_413071 and tr_A0A0F9XZ39_A0A0F9XZ39_TRIHA_5544 are exactly identical! WARNING: Sequences tr_G9MGY1_G9MGY1_HYPVG_413071 and tr_A0A2T4ALS1_A0A2T4ALS1_TRIHA_983964 are exactly identical! WARNING: Sequences tr_F4P988_F4P988_BATDJ_684364 and tr_A0A177WWF7_A0A177WWF7_BATDE_403673 are exactly identical! WARNING: Sequences tr_H0Z3H9_H0Z3H9_TAEGU_59729 and tr_U3JDH1_U3JDH1_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0Z3H9_H0Z3H9_TAEGU_59729 and tr_A0A091EWP4_A0A091EWP4_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0Z3H9_H0Z3H9_TAEGU_59729 and tr_A0A091VE72_A0A091VE72_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0Z3H9_H0Z3H9_TAEGU_59729 and tr_A0A087QPB8_A0A087QPB8_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0Z3H9_H0Z3H9_TAEGU_59729 and tr_A0A091G4T4_A0A091G4T4_9AVES_55661 are exactly identical! WARNING: Sequences tr_H0Z3H9_H0Z3H9_TAEGU_59729 and tr_A0A0A0A1I3_A0A0A0A1I3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_H0Z3H9_H0Z3H9_TAEGU_59729 and tr_A0A091HPE2_A0A091HPE2_CALAN_9244 are exactly identical! WARNING: Sequences tr_H0Z3H9_H0Z3H9_TAEGU_59729 and tr_A0A218ULE5_A0A218ULE5_9PASE_299123 are exactly identical! WARNING: Sequences tr_F9XII8_F9XII8_ZYMTI_336722 and tr_A0A0F4GH00_A0A0F4GH00_9PEZI_1047168 are exactly identical! WARNING: Sequences tr_G2Y496_G2Y496_BOTF4_999810 and tr_M7UYV0_M7UYV0_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_E3N7C3_E3N7C3_CAERE_31234 and tr_A0A261CKK3_A0A261CKK3_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A8Y4R8_A8Y4R8_CAEBR_6238 and tr_A0A2G5THU7_A0A2G5THU7_9PELO_1611254 are exactly identical! WARNING: Sequences tr_B4M634_B4M634_DROVI_7244 and tr_A0A0M5J275_A0A0M5J275_DROBS_30019 are exactly identical! WARNING: Sequences tr_G1L3C2_G1L3C2_AILME_9646 and tr_M3X5Y6_M3X5Y6_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1L3C2_G1L3C2_AILME_9646 and tr_A0A2U3WY34_A0A2U3WY34_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1L3C2_G1L3C2_AILME_9646 and tr_A0A2Y9K2I3_A0A2Y9K2I3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_B3RZ35_B3RZ35_TRIAD_10228 and tr_A0A369S9J6_A0A369S9J6_9METZ_287889 are exactly identical! WARNING: Sequences tr_B3RZ38_B3RZ38_TRIAD_10228 and tr_A0A369S914_A0A369S914_9METZ_287889 are exactly identical! WARNING: Sequences tr_G3Y1A2_G3Y1A2_ASPNA_380704 and tr_A0A319AI34_A0A319AI34_9EURO_1450533 are exactly identical! WARNING: Sequences tr_U3KD64_U3KD64_FICAL_59894 and tr_A0A218V3Y5_A0A218V3Y5_9PASE_299123 are exactly identical! WARNING: Sequences tr_M3ABU1_M3ABU1_PSEFD_383855 and tr_A0A139HD11_A0A139HD11_9PEZI_321146 are exactly identical! WARNING: Sequences tr_M2SJE4_M2SJE4_COCSN_665912 and tr_M2U1H2_M2U1H2_COCH5_701091 are exactly identical! WARNING: Sequences tr_M2SJE4_M2SJE4_COCSN_665912 and tr_W6YBR9_W6YBR9_COCCA_930089 are exactly identical! WARNING: Sequences tr_M2SJE4_M2SJE4_COCSN_665912 and tr_W6YXY2_W6YXY2_COCMI_930090 are exactly identical! WARNING: Sequences tr_V2XJM7_V2XJM7_MONRO_1381753 and tr_A0A0W0FU14_A0A0W0FU14_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W9WZ11_W9WZ11_9EURO_1182543 and tr_A0A0D2HC62_A0A0D2HC62_9EURO_1442371 are exactly identical! WARNING: Sequences tr_W9WZ11_W9WZ11_9EURO_1182543 and tr_A0A179A051_A0A179A051_9EURO_1367422 are exactly identical! WARNING: Sequences tr_W9WRB6_W9WRB6_9EURO_1182544 and tr_A0A1C1CB56_A0A1C1CB56_9EURO_86049 are exactly identical! WARNING: Sequences tr_A0A017SNU1_A0A017SNU1_9EURO_1388766 and tr_A0A1L9VHB1_A0A1L9VHB1_ASPGL_1160497 are exactly identical! WARNING: Sequences tr_A0A010RRK3_A0A010RRK3_9PEZI_1445577 and tr_A0A135V9X5_A0A135V9X5_9PEZI_1209931 are exactly identical! WARNING: Sequences tr_A0A010RRK3_A0A010RRK3_9PEZI_1445577 and tr_A0A1G4BMY4_A0A1G4BMY4_9PEZI_1209926 are exactly identical! WARNING: Sequences tr_A0A015JQY8_A0A015JQY8_9GLOM_1432141 and tr_A0A2I1GEU3_A0A2I1GEU3_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015JQY8_A0A015JQY8_9GLOM_1432141 and tr_A0A2H5U1D5_A0A2H5U1D5_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A059JAR4_A0A059JAR4_9EURO_1215338 and tr_A0A178F3U1_A0A178F3U1_TRIRU_5551 are exactly identical! WARNING: Sequences tr_A0A084QG23_A0A084QG23_STAC4_1283841 and tr_A0A084RUL0_A0A084RUL0_STACH_1283842 are exactly identical! WARNING: Sequences tr_A0A094EDN2_A0A094EDN2_9PEZI_1420912 and tr_A0A1B8GLE1_A0A1B8GLE1_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A0F8XRE3_A0A0F8XRE3_9EURO_308745 and tr_A0A2T5LXW9_A0A2T5LXW9_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0L1J9C5_A0A0L1J9C5_ASPNO_1509407 and tr_A0A1F8AC67_A0A1F8AC67_9EURO_109264 are exactly identical! WARNING: Sequences tr_A0A0M8P4U7_A0A0M8P4U7_9EURO_229535 and tr_A0A0G4PNV9_A0A0G4PNV9_PENCA_1429867 are exactly identical! WARNING: Sequences tr_A0A0M8P4U7_A0A0M8P4U7_9EURO_229535 and tr_A0A101MC58_A0A101MC58_9EURO_48697 are exactly identical! WARNING: Sequences tr_A0A0M8P4U7_A0A0M8P4U7_9EURO_229535 and tr_A0A1V6P389_A0A1V6P389_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A0M8P4U7_A0A0M8P4U7_9EURO_229535 and tr_A0A1V6QW45_A0A1V6QW45_9EURO_60172 are exactly identical! WARNING: Sequences tr_A0A0N1J338_A0A0N1J338_FUSLA_179993 and tr_A0A0E0SNM6_A0A0E0SNM6_GIBZE_229533 are exactly identical! WARNING: Sequences tr_A0A0N1J338_A0A0N1J338_FUSLA_179993 and tr_A0A2T4GNE5_A0A2T4GNE5_FUSCU_5516 are exactly identical! WARNING: Sequences tr_A0A0N1J338_A0A0N1J338_FUSLA_179993 and tr_A0A2L2TEI8_A0A2L2TEI8_9HYPO_56646 are exactly identical! WARNING: Sequences tr_A0A151MUF1_A0A151MUF1_ALLMI_8496 and tr_A0A1U7SCJ2_A0A1U7SCJ2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3P959_A0A0Q3P959_AMAAE_12930 and tr_A0A2I0MPV9_A0A2I0MPV9_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A0Q3P959_A0A0Q3P959_AMAAE_12930 and tr_A0A1U7R6F1_A0A1U7R6F1_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3P959_A0A0Q3P959_AMAAE_12930 and tr_A0A226PG02_A0A226PG02_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A091EXZ2_A0A091EXZ2_CORBR_85066 and tr_A0A093Q1M8_A0A093Q1M8_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EXZ2_A0A091EXZ2_CORBR_85066 and tr_A0A093HBR2_A0A093HBR2_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091EXZ2_A0A091EXZ2_CORBR_85066 and tr_A0A091W6E5_A0A091W6E5_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091EXZ2_A0A091EXZ2_CORBR_85066 and tr_A0A091G8T1_A0A091G8T1_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091EXZ2_A0A091EXZ2_CORBR_85066 and tr_A0A0A0AWC9_A0A0A0AWC9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091EXZ2_A0A091EXZ2_CORBR_85066 and tr_A0A093G517_A0A093G517_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091EXZ2_A0A091EXZ2_CORBR_85066 and tr_A0A091J3V9_A0A091J3V9_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A194RQA0_A0A194RQA0_PAPMA_76193 and tr_A0A194PME8_A0A194PME8_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A087R2R3_A0A087R2R3_APTFO_9233 and tr_A0A1V4JJG7_A0A1V4JJG7_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0MPK9_A0A2I0MPK9_COLLI_8932 and tr_A0A1V4KA45_A0A1V4KA45_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0RSY5_A0A0V0RSY5_9BILA_6336 and tr_A0A0V1LND1_A0A0V1LND1_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0RSY5_A0A0V0RSY5_9BILA_6336 and tr_A0A0V0UG48_A0A0V0UG48_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0X951_A0A0V0X951_9BILA_92179 and tr_A0A0V1NRN2_A0A0V1NRN2_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1N2V2_A0A0V1N2V2_9BILA_268474 and tr_A0A0V1HQ70_A0A0V1HQ70_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A132B2S8_A0A132B2S8_9HELO_149040 and tr_A0A1L7XVQ7_A0A1L7XVQ7_9HELO_576137 are exactly identical! WARNING: Sequences tr_A0A151XK56_A0A151XK56_9HYME_64791 and tr_A0A195FQM6_A0A195FQM6_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A166XLD8_A0A166XLD8_9PEZI_708197 and tr_A0A161XXJ3_A0A161XXJ3_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_A0A165BCH2_A0A165BCH2_EXIGL_1314781 and tr_A0A165EBK9_A0A165EBK9_EXIGL_1314781 are exactly identical! WARNING: Sequences tr_A0A1S3HSW8_A0A1S3HSW8_LINUN_7574 and tr_A0A1S3HSX9_A0A1S3HSX9_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A1S3SAI4_A0A1S3SAI4_SALSA_8030 and tr_A0A060XXM0_A0A060XXM0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1B8DWM6_A0A1B8DWM6_9PEZI_1524831 and tr_A0A1B8CHU3_A0A1B8CHU3_9PEZI_1622147 are exactly identical! WARNING: Sequences tr_A0A1B8DWM6_A0A1B8DWM6_9PEZI_1524831 and tr_A0A1B8EZV2_A0A1B8EZV2_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_A0A1F5LXB0_A0A1F5LXB0_9EURO_1835702 and tr_A0A1V6QGQ7_A0A1V6QGQ7_9EURO_416450 are exactly identical! WARNING: Sequences tr_A0A1E1KNK1_A0A1E1KNK1_9HELO_914237 and tr_A0A2H3EUT7_A0A2H3EUT7_9HELO_946125 are exactly identical! WARNING: Sequences tr_A0A1E1KNK1_A0A1E1KNK1_9HELO_914237 and tr_A0A2H3FIS0_A0A2H3FIS0_9HELO_946125 are exactly identical! WARNING: Sequences tr_A0A1E1KNK1_A0A1E1KNK1_9HELO_914237 and tr_A0A2V1BV13_A0A2V1BV13_9HELO_1485229 are exactly identical! WARNING: Sequences tr_A0A1D1W1H7_A0A1D1W1H7_RAMVA_947166 and tr_A0A1D1W8M2_A0A1D1W8M2_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A1V8UZY7_A0A1V8UZY7_9PEZI_1974281 and tr_A0A1V8V6W8_A0A1V8V6W8_9PEZI_1974281 are exactly identical! WARNING: Sequences tr_A0A1V8UZY7_A0A1V8UZY7_9PEZI_1974281 and tr_A0A1V8TRV6_A0A1V8TRV6_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A1V8UZY7_A0A1V8UZY7_9PEZI_1974281 and tr_A0A1V8TVA8_A0A1V8TVA8_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A1Z5T5V1_A0A1Z5T5V1_HORWE_1157616 and tr_A0A1Z5TM46_A0A1Z5TM46_HORWE_1157616 are exactly identical! WARNING: Sequences tr_A0A2H3E0W6_A0A2H3E0W6_ARMGA_47427 and tr_A0A2H3C4T3_A0A2H3C4T3_9AGAR_1076256 are exactly identical! WARNING: Sequences tr_A0A2G5HIJ0_A0A2G5HIJ0_CERBT_122368 and tr_A0A2I0RML3_A0A2I0RML3_9PEZI_348901 are exactly identical! WARNING: Sequences tr_A0A2N5SWW8_A0A2N5SWW8_9BASI_200324 and tr_A0A2N5VGW1_A0A2N5VGW1_9BASI_200324 are exactly identical! WARNING: Sequences tr_A0A2K3QF50_A0A2K3QF50_9HYPO_45235 and tr_A0A2S4KLH5_A0A2S4KLH5_9HYPO_94208 are exactly identical! WARNING: Sequences tr_A0A2S7NMB4_A0A2S7NMB4_9HELO_2070414 and tr_A0A2S7QT67_A0A2S7QT67_9HELO_2070412 are exactly identical! WARNING: Sequences tr_A0A2T4CAR8_A0A2T4CAR8_TRILO_983965 and tr_A0A2T4BJH1_A0A2T4BJH1_9HYPO_58853 are exactly identical! WARNING: Sequences tr_A0A2U3V6Q3_A0A2U3V6Q3_TURTR_9739 and tr_A0A2Y9NXI4_A0A2Y9NXI4_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3V6Q3_A0A2U3V6Q3_TURTR_9739 and tr_A0A2Y9ESU0_A0A2Y9ESU0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3V6Q3_A0A2U3V6Q3_TURTR_9739 and tr_A0A384BDT9_A0A384BDT9_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4CRM2_A0A2U4CRM2_TURTR_9739 and tr_A0A2Y9PQI3_A0A2Y9PQI3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A319BX63_A0A319BX63_9EURO_1448315 and tr_A0A2V5IGU0_A0A2V5IGU0_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A319BX63_A0A319BX63_9EURO_1448315 and tr_A0A2V5GXE6_A0A2V5GXE6_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A369GXD6_A0A369GXD6_9HYPO_2039875 and tr_A0A369H8L9_A0A369H8L9_9HYPO_2039874 are exactly identical! WARNING: Sequences tr_A0A369GXD6_A0A369GXD6_9HYPO_2039875 and tr_A0A367LAA8_A0A367LAA8_9HYPO_1330021 are exactly identical! WARNING: Duplicate sequences found: 267 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/3_mltree/Q14738.raxml.reduced.phy Alignment comprises 1 partitions and 421 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 429 / 421 Gaps: 0.91 % Invariant sites: 7.69 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/3_mltree/Q14738.raxml.rba Parallelization scheme autoconfig: 3 worker(s) x 2 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 211 / 16880 [00:00:00] Data distribution: max. searches per worker: 7 Starting ML tree search with 20 distinct starting trees [00:00:00 -386927.848414] Initial branch length optimization [00:00:09 -326388.686961] Model parameter optimization (eps = 10.000000) [00:01:06 -326031.154590] AUTODETECT spr round 1 (radius: 5) [00:04:06 -178509.398559] AUTODETECT spr round 2 (radius: 10) [00:06:58 -121602.219152] AUTODETECT spr round 3 (radius: 15) [00:10:04 -101492.157382] AUTODETECT spr round 4 (radius: 20) [00:13:36 -91889.889613] AUTODETECT spr round 5 (radius: 25) [00:17:30 -83882.130093] SPR radius for FAST iterations: 25 (autodetect) [00:17:30 -83882.130093] Model parameter optimization (eps = 3.000000) [00:17:51 -83798.484411] FAST spr round 1 (radius: 25) [00:20:27 -61951.722889] FAST spr round 2 (radius: 25) [00:22:39 -59738.798122] FAST spr round 3 (radius: 25) [00:24:33 -59187.416622] FAST spr round 4 (radius: 25) [00:26:25 -59157.765628] FAST spr round 5 (radius: 25) [00:28:07 -59155.687904] FAST spr round 6 (radius: 25) [00:29:45 -59155.687861] Model parameter optimization (eps = 1.000000) [00:30:07 -59150.214346] SLOW spr round 1 (radius: 5) [00:32:17 -59135.551219] SLOW spr round 2 (radius: 5) [00:34:28 -59129.059231] SLOW spr round 3 (radius: 5) [00:36:38 -59127.859383] SLOW spr round 4 (radius: 5) [00:38:45 -59127.859051] SLOW spr round 5 (radius: 10) [00:41:01 -59127.859003] SLOW spr round 6 (radius: 15) [00:44:31 -59127.858965] SLOW spr round 7 (radius: 20) [00:50:07 -59127.858927] SLOW spr round 8 (radius: 25) [00:50:43] [worker #1] ML tree search #2, logLikelihood: -59122.193161 [00:57:18 -59127.858890] Model parameter optimization (eps = 0.100000) [00:57:24] [worker #0] ML tree search #1, logLikelihood: -59127.802295 [00:57:24 -388764.135773] Initial branch length optimization [00:57:31 -324680.449644] Model parameter optimization (eps = 10.000000) [00:58:09 -324351.616793] AUTODETECT spr round 1 (radius: 5) [01:01:09 -177136.320893] AUTODETECT spr round 2 (radius: 10) [01:02:01] [worker #2] ML tree search #3, logLikelihood: -59115.703432 [01:03:57 -124518.526023] AUTODETECT spr round 3 (radius: 15) [01:07:06 -93570.548607] AUTODETECT spr round 4 (radius: 20) [01:10:41 -77743.909960] AUTODETECT spr round 5 (radius: 25) [01:14:31 -74125.968227] SPR radius for FAST iterations: 25 (autodetect) [01:14:31 -74125.968227] Model parameter optimization (eps = 3.000000) [01:14:54 -74031.886775] FAST spr round 1 (radius: 25) [01:17:45 -60852.917508] FAST spr round 2 (radius: 25) [01:20:02 -59394.374687] FAST spr round 3 (radius: 25) [01:22:12 -59170.256917] FAST spr round 4 (radius: 25) [01:24:04 -59162.065080] FAST spr round 5 (radius: 25) [01:25:47 -59162.064777] Model parameter optimization (eps = 1.000000) [01:26:09 -59155.596620] SLOW spr round 1 (radius: 5) [01:28:25 -59133.140906] SLOW spr round 2 (radius: 5) [01:30:41 -59130.196256] SLOW spr round 3 (radius: 5) [01:32:50 -59130.196141] SLOW spr round 4 (radius: 10) [01:35:13 -59123.577388] SLOW spr round 5 (radius: 5) [01:38:04 -59119.898410] SLOW spr round 6 (radius: 5) [01:40:34 -59119.124930] SLOW spr round 7 (radius: 5) [01:42:50 -59119.124921] SLOW spr round 8 (radius: 10) [01:45:10 -59118.332368] SLOW spr round 9 (radius: 5) [01:46:26] [worker #1] ML tree search #5, logLikelihood: -59136.172259 [01:47:55 -59118.332368] SLOW spr round 10 (radius: 10) [01:50:24 -59118.332367] SLOW spr round 11 (radius: 15) [01:53:46 -59118.332367] SLOW spr round 12 (radius: 20) [01:58:57 -59118.332365] SLOW spr round 13 (radius: 25) [02:04:46 -59118.332364] Model parameter optimization (eps = 0.100000) [02:04:59] [worker #0] ML tree search #4, logLikelihood: -59117.999028 [02:05:00 -389475.171172] Initial branch length optimization [02:05:08 -328450.098094] Model parameter optimization (eps = 10.000000) [02:05:50 -328115.013276] AUTODETECT spr round 1 (radius: 5) [02:08:43 -173738.553424] AUTODETECT spr round 2 (radius: 10) [02:11:29 -114869.997243] AUTODETECT spr round 3 (radius: 15) [02:14:05] [worker #2] ML tree search #6, logLikelihood: -59132.955907 [02:14:34 -93939.874138] AUTODETECT spr round 4 (radius: 20) [02:18:03 -81976.728929] AUTODETECT spr round 5 (radius: 25) [02:21:53 -76266.462661] SPR radius for FAST iterations: 25 (autodetect) [02:21:53 -76266.462661] Model parameter optimization (eps = 3.000000) [02:22:12 -76176.194196] FAST spr round 1 (radius: 25) [02:24:55 -59856.461362] FAST spr round 2 (radius: 25) [02:26:58 -59209.121720] FAST spr round 3 (radius: 25) [02:28:52 -59158.662114] FAST spr round 4 (radius: 25) [02:30:41 -59151.929840] FAST spr round 5 (radius: 25) [02:32:23 -59148.646511] FAST spr round 6 (radius: 25) [02:34:03 -59148.646449] Model parameter optimization (eps = 1.000000) [02:34:17 -59145.109982] SLOW spr round 1 (radius: 5) [02:36:27 -59129.003989] SLOW spr round 2 (radius: 5) [02:38:35 -59128.297404] SLOW spr round 3 (radius: 5) [02:40:42 -59128.181301] SLOW spr round 4 (radius: 5) [02:42:25] [worker #1] ML tree search #8, logLikelihood: -59121.782138 [02:42:49 -59128.181268] SLOW spr round 5 (radius: 10) [02:45:07 -59126.935981] SLOW spr round 6 (radius: 5) [02:47:56 -59126.507635] SLOW spr round 7 (radius: 5) [02:50:23 -59126.507634] SLOW spr round 8 (radius: 10) [02:52:44 -59126.507634] SLOW spr round 9 (radius: 15) [02:56:20 -59126.507634] SLOW spr round 10 (radius: 20) [03:01:50 -59126.507634] SLOW spr round 11 (radius: 25) [03:07:59 -59126.507634] Model parameter optimization (eps = 0.100000) [03:08:06] [worker #0] ML tree search #7, logLikelihood: -59126.481316 [03:08:06 -390316.057463] Initial branch length optimization [03:08:17 -327937.501887] Model parameter optimization (eps = 10.000000) [03:09:03 -327586.479183] AUTODETECT spr round 1 (radius: 5) [03:09:57] [worker #2] ML tree search #9, logLikelihood: -59139.796285 [03:12:05 -182923.826519] AUTODETECT spr round 2 (radius: 10) [03:15:01 -122930.667658] AUTODETECT spr round 3 (radius: 15) [03:18:07 -91712.536519] AUTODETECT spr round 4 (radius: 20) [03:21:11 -83321.997717] AUTODETECT spr round 5 (radius: 25) [03:25:25 -74961.639436] SPR radius for FAST iterations: 25 (autodetect) [03:25:25 -74961.639436] Model parameter optimization (eps = 3.000000) [03:25:43 -74864.792849] FAST spr round 1 (radius: 25) [03:28:21 -60210.960202] FAST spr round 2 (radius: 25) [03:30:26 -59313.733531] FAST spr round 3 (radius: 25) [03:32:28 -59213.605501] FAST spr round 4 (radius: 25) [03:34:17 -59208.938437] FAST spr round 5 (radius: 25) [03:35:58 -59208.938026] Model parameter optimization (eps = 1.000000) [03:36:18 -59200.512954] SLOW spr round 1 (radius: 5) [03:37:46] [worker #1] ML tree search #11, logLikelihood: -59146.174952 [03:38:32 -59189.077510] SLOW spr round 2 (radius: 5) [03:40:38 -59189.077422] SLOW spr round 3 (radius: 10) [03:42:57 -59189.077343] SLOW spr round 4 (radius: 15) [03:46:39 -59189.077272] SLOW spr round 5 (radius: 20) [03:51:25 -59189.077204] SLOW spr round 6 (radius: 25) [03:57:26 -59189.077137] Model parameter optimization (eps = 0.100000) [03:57:34] [worker #0] ML tree search #10, logLikelihood: -59189.018674 [03:57:34 -389170.209350] Initial branch length optimization [03:57:43 -327199.367952] Model parameter optimization (eps = 10.000000) [03:58:25 -326871.445805] AUTODETECT spr round 1 (radius: 5) [04:01:29 -185965.575681] AUTODETECT spr round 2 (radius: 10) [04:04:39 -120876.713070] AUTODETECT spr round 3 (radius: 15) [04:05:25] [worker #2] ML tree search #12, logLikelihood: -59120.891856 [04:07:47 -94344.640889] AUTODETECT spr round 4 (radius: 20) [04:11:23 -75750.317272] AUTODETECT spr round 5 (radius: 25) [04:14:49 -73809.206125] SPR radius for FAST iterations: 25 (autodetect) [04:14:49 -73809.206125] Model parameter optimization (eps = 3.000000) [04:15:11 -73714.398223] FAST spr round 1 (radius: 25) [04:17:49 -59926.037688] FAST spr round 2 (radius: 25) [04:19:55 -59238.802326] FAST spr round 3 (radius: 25) [04:21:55 -59154.621597] FAST spr round 4 (radius: 25) [04:23:47 -59138.127912] FAST spr round 5 (radius: 25) [04:25:32 -59138.127110] Model parameter optimization (eps = 1.000000) [04:25:46 -59135.920915] SLOW spr round 1 (radius: 5) [04:28:01 -59119.259183] SLOW spr round 2 (radius: 5) [04:30:13 -59117.364595] SLOW spr round 3 (radius: 5) [04:32:22 -59117.364431] SLOW spr round 4 (radius: 10) [04:34:43 -59115.645302] SLOW spr round 5 (radius: 5) [04:37:32 -59114.413962] SLOW spr round 6 (radius: 5) [04:40:01 -59114.413801] SLOW spr round 7 (radius: 10) [04:41:16] [worker #1] ML tree search #14, logLikelihood: -59117.951607 [04:42:25 -59114.413646] SLOW spr round 8 (radius: 15) [04:45:55 -59114.413471] SLOW spr round 9 (radius: 20) [04:50:58 -59114.413314] SLOW spr round 10 (radius: 25) [04:56:48 -59114.413170] Model parameter optimization (eps = 0.100000) [04:56:57] [worker #0] ML tree search #13, logLikelihood: -59114.398862 [04:56:57 -391546.757325] Initial branch length optimization [04:57:05 -328929.437502] Model parameter optimization (eps = 10.000000) [04:57:42 -328595.427862] AUTODETECT spr round 1 (radius: 5) [05:00:49 -180494.560708] AUTODETECT spr round 2 (radius: 10) [05:03:40 -123912.736041] AUTODETECT spr round 3 (radius: 15) [05:06:46 -93417.843851] AUTODETECT spr round 4 (radius: 20) [05:10:09 -82345.232238] AUTODETECT spr round 5 (radius: 25) [05:10:52] [worker #2] ML tree search #15, logLikelihood: -59123.947797 [05:14:07 -76809.914549] SPR radius for FAST iterations: 25 (autodetect) [05:14:07 -76809.914549] Model parameter optimization (eps = 3.000000) [05:14:30 -76727.782906] FAST spr round 1 (radius: 25) [05:17:19 -60073.453879] FAST spr round 2 (radius: 25) [05:19:31 -59254.946825] FAST spr round 3 (radius: 25) [05:21:34 -59162.046424] FAST spr round 4 (radius: 25) [05:23:24 -59156.257600] FAST spr round 5 (radius: 25) [05:25:07 -59152.821216] FAST spr round 6 (radius: 25) [05:26:48 -59152.820279] Model parameter optimization (eps = 1.000000) [05:27:07 -59147.812528] SLOW spr round 1 (radius: 5) [05:29:19 -59137.608064] SLOW spr round 2 (radius: 5) [05:31:27 -59136.292745] SLOW spr round 3 (radius: 5) [05:33:34 -59135.013954] SLOW spr round 4 (radius: 5) [05:35:41 -59135.013899] SLOW spr round 5 (radius: 10) [05:36:48] [worker #1] ML tree search #17, logLikelihood: -59126.152400 [05:37:59 -59135.013890] SLOW spr round 6 (radius: 15) [05:41:38 -59133.400060] SLOW spr round 7 (radius: 5) [05:44:47 -59128.453942] SLOW spr round 8 (radius: 5) [05:47:25 -59126.581513] SLOW spr round 9 (radius: 5) [05:49:51 -59124.051398] SLOW spr round 10 (radius: 5) [05:52:05 -59124.051388] SLOW spr round 11 (radius: 10) [05:54:25 -59124.051387] SLOW spr round 12 (radius: 15) [05:58:01 -59124.051381] SLOW spr round 13 (radius: 20) [06:03:22 -59124.051380] SLOW spr round 14 (radius: 25) [06:09:24] [worker #2] ML tree search #18, logLikelihood: -59120.601647 [06:09:33 -59124.051379] Model parameter optimization (eps = 0.100000) [06:09:40] [worker #0] ML tree search #16, logLikelihood: -59123.987683 [06:09:40 -387903.616202] Initial branch length optimization [06:09:49 -326837.492449] Model parameter optimization (eps = 10.000000) [06:10:41 -326505.345873] AUTODETECT spr round 1 (radius: 5) [06:13:47 -171706.089134] AUTODETECT spr round 2 (radius: 10) [06:16:34 -115575.425571] AUTODETECT spr round 3 (radius: 15) [06:19:37 -89957.286959] AUTODETECT spr round 4 (radius: 20) [06:23:22 -76205.558195] AUTODETECT spr round 5 (radius: 25) [06:27:27 -73994.601225] SPR radius for FAST iterations: 25 (autodetect) [06:27:27 -73994.601225] Model parameter optimization (eps = 3.000000) [06:27:52 -73893.790929] FAST spr round 1 (radius: 25) [06:30:39 -60212.715465] FAST spr round 2 (radius: 25) [06:32:54 -59249.419278] FAST spr round 3 (radius: 25) [06:34:58 -59159.828607] FAST spr round 4 (radius: 25) [06:36:48 -59150.828410] FAST spr round 5 (radius: 25) [06:38:29 -59150.828205] Model parameter optimization (eps = 1.000000) [06:38:45 -59148.364686] SLOW spr round 1 (radius: 5) [06:41:04 -59131.741005] SLOW spr round 2 (radius: 5) [06:42:36] [worker #1] ML tree search #20, logLikelihood: -59191.978947 [06:43:17 -59129.852969] SLOW spr round 3 (radius: 5) [06:45:26 -59129.072002] SLOW spr round 4 (radius: 5) [06:47:34 -59129.071844] SLOW spr round 5 (radius: 10) [06:49:51 -59129.071660] SLOW spr round 6 (radius: 15) [06:53:31 -59128.026838] SLOW spr round 7 (radius: 5) [06:56:29 -59128.026676] SLOW spr round 8 (radius: 10) [06:59:09 -59128.026511] SLOW spr round 9 (radius: 15) [07:02:37 -59128.026353] SLOW spr round 10 (radius: 20) [07:08:05 -59127.226976] SLOW spr round 11 (radius: 5) [07:11:07 -59127.226816] SLOW spr round 12 (radius: 10) [07:13:51 -59127.226656] SLOW spr round 13 (radius: 15) [07:17:20 -59127.226496] SLOW spr round 14 (radius: 20) [07:22:46 -59127.226336] SLOW spr round 15 (radius: 25) [07:29:00 -59127.226175] Model parameter optimization (eps = 0.100000) [07:29:06] [worker #0] ML tree search #19, logLikelihood: -59127.205301 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.352854,0.356207) (0.393889,0.593567) (0.164904,1.594711) (0.088353,4.273042) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -59114.398862 AIC score: 122238.797725 / AICc score: 8166298.797725 / BIC score: 130382.018847 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=429). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/3_mltree/Q14738.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/3_mltree/Q14738.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/3_mltree/Q14738.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14738/3_mltree/Q14738.raxml.log Analysis started: 07-Jul-2021 05:10:31 / finished: 07-Jul-2021 12:39:38 Elapsed time: 26946.698 seconds Consumed energy: 2260.744 Wh (= 11 km in an electric car, or 57 km with an e-scooter!)