RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 14-Jul-2021 07:36:07 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14674/2_msa/Q14674_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14674/3_mltree/Q14674 --seed 2 --threads 1 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), NONE/sequential

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14674/2_msa/Q14674_trimmed_msa.fasta
[00:00:00] Loaded alignment with 458 taxa and 37 sites

WARNING: Sequences sp_P33144_BIMB_EMENI_227321 and tr_S8BGE7_S8BGE7_PENO1_933388 are exactly identical!
WARNING: Sequences sp_P33144_BIMB_EMENI_227321 and tr_A0A0F8X3E5_A0A0F8X3E5_9EURO_308745 are exactly identical!
WARNING: Sequences sp_P33144_BIMB_EMENI_227321 and tr_A0A0U5GTS1_A0A0U5GTS1_9EURO_454130 are exactly identical!
WARNING: Sequences sp_P33144_BIMB_EMENI_227321 and tr_A0A1E3BGZ4_A0A1E3BGZ4_9EURO_573508 are exactly identical!
WARNING: Sequences sp_P33144_BIMB_EMENI_227321 and tr_A0A1L9Q010_A0A1L9Q010_ASPVE_1036611 are exactly identical!
WARNING: Sequences sp_P33144_BIMB_EMENI_227321 and tr_A0A1L9V9W6_A0A1L9V9W6_ASPGL_1160497 are exactly identical!
WARNING: Sequences sp_P33144_BIMB_EMENI_227321 and tr_A0A2T5LNF1_A0A2T5LNF1_9EURO_1392256 are exactly identical!
WARNING: Sequences tr_A0A0D1E266_A0A0D1E266_USTMA_237631 and tr_E7A2F4_E7A2F4_SPORE_999809 are exactly identical!
WARNING: Sequences tr_A0A0D1E266_A0A0D1E266_USTMA_237631 and tr_A0A0F7S8M3_A0A0F7S8M3_9BASI_49012 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_M3Y3Y5_M3Y3Y5_MUSPF_9669 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_A0A2I3GBC2_A0A2I3GBC2_NOMLE_61853 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_G1PWJ0_G1PWJ0_MYOLU_59463 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_G3HV51_G3HV51_CRIGR_10029 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_G3QGW5_G3QGW5_GORGO_9595 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_H2NHG6_H2NHG6_PONAB_9601 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_G1T0Y4_G1T0Y4_RABIT_9986 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_E2RBD6_E2RBD6_CANLF_9615 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_H2Q618_H2Q618_PANTR_9598 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_F6UEQ7_F6UEQ7_HORSE_9796 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_W5Q543_W5Q543_SHEEP_9940 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_D3ZDT7_D3ZDT7_RAT_10116 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_H0UVI3_H0UVI3_CAVPO_10141 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_F7HTH0_F7HTH0_MACMU_9544 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_G3T1N3_G3T1N3_LOXAF_9785 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_F1SFR3_F1SFR3_PIG_9823 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_D2HLP9_D2HLP9_AILME_9646 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_G7PHU5_G7PHU5_MACFA_9541 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_F1MW01_F1MW01_BOVIN_9913 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_L5L5H8_L5L5H8_PTEAL_9402 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_M3W4W0_M3W4W0_FELCA_9685 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_A0A096NXI7_A0A096NXI7_PAPAN_9555 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_A0A091CUG8_A0A091CUG8_FUKDA_885580 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_A0A0D9QZP0_A0A0D9QZP0_CHLSB_60711 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_A0A1S3W551_A0A1S3W551_ERIEU_9365 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_A0A1U7QJG8_A0A1U7QJG8_MESAU_10036 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_A0A2K5NBM8_A0A2K5NBM8_CERAT_9531 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_A0A2K6D5Y9_A0A2K6D5Y9_MACNE_9545 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_A0A2K5XKD4_A0A2K5XKD4_MANLE_9568 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_A0A2R9CN23_A0A2R9CN23_PANPA_9597 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_A0A2U4CBD1_A0A2U4CBD1_TURTR_9739 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_A0A2U3YDH2_A0A2U3YDH2_LEPWE_9713 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_A0A2Y9DG72_A0A2Y9DG72_TRIMA_127582 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_A0A2Y9L1N6_A0A2Y9L1N6_ENHLU_391180 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_A0A2Y9NET1_A0A2Y9NET1_DELLE_9749 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_A0A2Y9FL99_A0A2Y9FL99_PHYCD_9755 are exactly identical!
WARNING: Sequences sp_P60330_ESPL1_MOUSE_10090 and tr_A0A384D7R8_A0A384D7R8_URSMA_29073 are exactly identical!
WARNING: Sequences tr_B6GZP8_B6GZP8_PENRW_500485 and tr_B8MWQ6_B8MWQ6_ASPFN_332952 are exactly identical!
WARNING: Sequences tr_B6GZP8_B6GZP8_PENRW_500485 and tr_Q2USV7_Q2USV7_ASPOR_510516 are exactly identical!
WARNING: Sequences tr_B6GZP8_B6GZP8_PENRW_500485 and tr_Q0CIP4_Q0CIP4_ASPTN_341663 are exactly identical!
WARNING: Sequences tr_B6GZP8_B6GZP8_PENRW_500485 and tr_W6QI42_W6QI42_PENRF_1365484 are exactly identical!
WARNING: Sequences tr_B6GZP8_B6GZP8_PENRW_500485 and tr_A0A0F0I5C2_A0A0F0I5C2_ASPPU_1403190 are exactly identical!
WARNING: Sequences tr_B6GZP8_B6GZP8_PENRW_500485 and tr_A0A0G4PSA6_A0A0G4PSA6_PENCA_1429867 are exactly identical!
WARNING: Sequences tr_B6GZP8_B6GZP8_PENRW_500485 and tr_A0A101MBG3_A0A101MBG3_9EURO_48697 are exactly identical!
WARNING: Sequences tr_B6GZP8_B6GZP8_PENRW_500485 and tr_A0A135LMV7_A0A135LMV7_PENPA_5078 are exactly identical!
WARNING: Sequences tr_B6GZP8_B6GZP8_PENRW_500485 and tr_A0A1S9DWF2_A0A1S9DWF2_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_B6GZP8_B6GZP8_PENRW_500485 and tr_A0A1V6NNG8_A0A1V6NNG8_9EURO_60169 are exactly identical!
WARNING: Sequences tr_B6GZP8_B6GZP8_PENRW_500485 and tr_A0A1V6SER0_A0A1V6SER0_9EURO_29845 are exactly identical!
WARNING: Sequences tr_B6GZP8_B6GZP8_PENRW_500485 and tr_A0A1V6RBQ8_A0A1V6RBQ8_9EURO_60172 are exactly identical!
WARNING: Sequences tr_B6GZP8_B6GZP8_PENRW_500485 and tr_A0A2G7G5N7_A0A2G7G5N7_9EURO_656916 are exactly identical!
WARNING: Sequences tr_F0ZSA5_F0ZSA5_DICPU_5786 and tr_Q54G81_Q54G81_DICDI_44689 are exactly identical!
WARNING: Sequences tr_B0DPD5_B0DPD5_LACBS_486041 and tr_B0E2C7_B0E2C7_LACBS_486041 are exactly identical!
WARNING: Sequences tr_B0DPD5_B0DPD5_LACBS_486041 and tr_A0A0C9Y4Q4_A0A0C9Y4Q4_9AGAR_1095629 are exactly identical!
WARNING: Sequences tr_A0A0E1RXC5_A0A0E1RXC5_COCIM_246410 and tr_E9DE04_E9DE04_COCPS_443226 are exactly identical!
WARNING: Sequences tr_B6QNB5_B6QNB5_TALMQ_441960 and tr_A0A093UR32_A0A093UR32_TALMA_1077442 are exactly identical!
WARNING: Sequences tr_G3JQ36_G3JQ36_CORMM_983644 and tr_A0A0M8N418_A0A0M8N418_9HYPO_150374 are exactly identical!
WARNING: Sequences tr_G3JQ36_G3JQ36_CORMM_983644 and tr_A0A162I7M1_A0A162I7M1_9HYPO_1081104 are exactly identical!
WARNING: Sequences tr_Q7RXM1_Q7RXM1_NEUCR_367110 and tr_F7W300_F7W300_SORMK_771870 are exactly identical!
WARNING: Sequences tr_Q7RXM1_Q7RXM1_NEUCR_367110 and tr_G4UQF5_G4UQF5_NEUT9_510952 are exactly identical!
WARNING: Sequences tr_C5FSW7_C5FSW7_ARTOC_554155 and tr_E4UPK7_E4UPK7_ARTGP_535722 are exactly identical!
WARNING: Sequences tr_C5FSW7_C5FSW7_ARTOC_554155 and tr_D4AYL8_D4AYL8_ARTBC_663331 are exactly identical!
WARNING: Sequences tr_C5FSW7_C5FSW7_ARTOC_554155 and tr_F2PIK9_F2PIK9_TRIEC_559882 are exactly identical!
WARNING: Sequences tr_C5FSW7_C5FSW7_ARTOC_554155 and tr_A0A059IYI9_A0A059IYI9_9EURO_1215338 are exactly identical!
WARNING: Sequences tr_Q4D4L8_Q4D4L8_TRYCC_353153 and tr_Q4D5G8_Q4D5G8_TRYCC_353153 are exactly identical!
WARNING: Sequences tr_F9FVW5_F9FVW5_FUSOF_660025 and tr_A0A0D2XZG0_A0A0D2XZG0_FUSO4_426428 are exactly identical!
WARNING: Sequences tr_F9FVW5_F9FVW5_FUSOF_660025 and tr_N4USV7_N4USV7_FUSC1_1229664 are exactly identical!
WARNING: Sequences tr_F9FVW5_F9FVW5_FUSOF_660025 and tr_X0DKU8_X0DKU8_FUSOX_1089458 are exactly identical!
WARNING: Sequences tr_F9FVW5_F9FVW5_FUSOF_660025 and tr_A0A2H3TY85_A0A2H3TY85_FUSOX_5507 are exactly identical!
WARNING: Sequences tr_F9FVW5_F9FVW5_FUSOF_660025 and tr_A0A2H3GJR6_A0A2H3GJR6_FUSOX_327505 are exactly identical!
WARNING: Sequences tr_F9FVW5_F9FVW5_FUSOF_660025 and tr_A0A2K0WHW1_A0A2K0WHW1_GIBNY_42673 are exactly identical!
WARNING: Sequences tr_J5K578_J5K578_BEAB2_655819 and tr_A0A0A2VC18_A0A0A2VC18_BEABA_1245745 are exactly identical!
WARNING: Sequences tr_J5K578_J5K578_BEAB2_655819 and tr_A0A166YNM1_A0A166YNM1_9HYPO_1081107 are exactly identical!
WARNING: Sequences tr_J5K578_J5K578_BEAB2_655819 and tr_A0A2N6P1I7_A0A2N6P1I7_BEABA_176275 are exactly identical!
WARNING: Sequences tr_G9NUL8_G9NUL8_HYPAI_452589 and tr_A0A2P4ZQ12_A0A2P4ZQ12_9HYPO_398673 are exactly identical!
WARNING: Sequences sp_Q14674_ESPL1_HUMAN_9606 and tr_F7BUI1_F7BUI1_CALJA_9483 are exactly identical!
WARNING: Sequences sp_Q14674_ESPL1_HUMAN_9606 and tr_A0A383ZWJ6_A0A383ZWJ6_BALAS_310752 are exactly identical!
WARNING: Sequences tr_E5SEF6_E5SEF6_TRISP_6334 and tr_A0A0V1PP11_A0A0V1PP11_9BILA_92180 are exactly identical!
WARNING: Sequences tr_D5GKQ4_D5GKQ4_TUBMM_656061 and tr_A0A317SQE6_A0A317SQE6_9PEZI_42249 are exactly identical!
WARNING: Sequences tr_H1W2N9_H1W2N9_COLHI_759273 and tr_E3Q2P3_E3Q2P3_COLGM_645133 are exactly identical!
WARNING: Sequences tr_H1W2N9_H1W2N9_COLHI_759273 and tr_L2FHK9_L2FHK9_COLFN_1213859 are exactly identical!
WARNING: Sequences tr_H1W2N9_H1W2N9_COLHI_759273 and tr_T0KIA6_T0KIA6_COLGC_1237896 are exactly identical!
WARNING: Sequences tr_H1W2N9_H1W2N9_COLHI_759273 and tr_A0A010RMR1_A0A010RMR1_9PEZI_1445577 are exactly identical!
WARNING: Sequences tr_H1W2N9_H1W2N9_COLHI_759273 and tr_A0A066X5R2_A0A066X5R2_COLSU_1173701 are exactly identical!
WARNING: Sequences tr_H1W2N9_H1W2N9_COLHI_759273 and tr_A0A135U2H7_A0A135U2H7_9PEZI_1209931 are exactly identical!
WARNING: Sequences tr_H1W2N9_H1W2N9_COLHI_759273 and tr_A0A161YAH3_A0A161YAH3_9PEZI_1573173 are exactly identical!
WARNING: Sequences tr_H1W2N9_H1W2N9_COLHI_759273 and tr_A0A1G4B2I6_A0A1G4B2I6_9PEZI_1209926 are exactly identical!
WARNING: Sequences tr_H1W2N9_H1W2N9_COLHI_759273 and tr_A0A1Q8RBD2_A0A1Q8RBD2_9PEZI_708187 are exactly identical!
WARNING: Sequences tr_F6VXN8_F6VXN8_XENTR_8364 and tr_A0A1L8HA79_A0A1L8HA79_XENLA_8355 are exactly identical!
WARNING: Sequences tr_G2YRB3_G2YRB3_BOTF4_999810 and tr_M7TX51_M7TX51_BOTF1_1290391 are exactly identical!
WARNING: Sequences tr_A0A0R0FW02_A0A0R0FW02_SOYBN_3847 and tr_K7L7G8_K7L7G8_SOYBN_3847 are exactly identical!
WARNING: Sequences tr_F2SVC7_F2SVC7_TRIRC_559305 and tr_A0A178EZE1_A0A178EZE1_TRIRU_5551 are exactly identical!
WARNING: Sequences tr_G0RRT6_G0RRT6_HYPJQ_431241 and tr_A0A2T4BYG4_A0A2T4BYG4_TRILO_983965 are exactly identical!
WARNING: Sequences tr_M4DB05_M4DB05_BRARP_51351 and tr_A0A078FCX7_A0A078FCX7_BRANA_3708 are exactly identical!
WARNING: Sequences tr_M4DB05_M4DB05_BRARP_51351 and tr_A0A078HRN4_A0A078HRN4_BRANA_3708 are exactly identical!
WARNING: Sequences tr_M4DB05_M4DB05_BRARP_51351 and tr_V4MI91_V4MI91_EUTSA_72664 are exactly identical!
WARNING: Sequences tr_M4DB05_M4DB05_BRARP_51351 and tr_A0A0D3A5D4_A0A0D3A5D4_BRAOL_109376 are exactly identical!
WARNING: Sequences tr_M8A0A1_M8A0A1_TRIUA_4572 and tr_A0A3B6AYD2_A0A3B6AYD2_WHEAT_4565 are exactly identical!
WARNING: Sequences tr_U5HB45_U5HB45_USTV1_683840 and tr_A0A2X0MNL7_A0A2X0MNL7_9BASI_796604 are exactly identical!
WARNING: Sequences tr_U5HB45_U5HB45_USTV1_683840 and tr_A0A2X0NNH1_A0A2X0NNH1_9BASI_289078 are exactly identical!
WARNING: Sequences tr_V2X3W8_V2X3W8_MONRO_1381753 and tr_A0A0W0FSD5_A0A0W0FSD5_9AGAR_221103 are exactly identical!
WARNING: Sequences tr_W2PVP9_W2PVP9_PHYPN_761204 and tr_A0A0W8CQV5_A0A0W8CQV5_PHYNI_4790 are exactly identical!
WARNING: Sequences tr_W2PVP9_W2PVP9_PHYPN_761204 and tr_W2KS61_W2KS61_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_A0A015M119_A0A015M119_9GLOM_1432141 and tr_A0A2I1FVD4_A0A2I1FVD4_9GLOM_588596 are exactly identical!
WARNING: Sequences tr_A0A015M119_A0A015M119_9GLOM_1432141 and tr_A0A2H5SXH9_A0A2H5SXH9_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A0D2NFD1_A0A0D2NFD1_GOSRA_29730 and tr_A0A1U8KWV0_A0A1U8KWV0_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A0D2NFD1_A0A0D2NFD1_GOSRA_29730 and tr_A0A1U8LE80_A0A1U8LE80_GOSHI_3635 are exactly identical!
WARNING: Sequences tr_A0A2A9PJL4_A0A2A9PJL4_9HYPO_268505 and tr_A0A369GIV0_A0A369GIV0_9HYPO_2039875 are exactly identical!
WARNING: Sequences tr_A0A2A9PJL4_A0A2A9PJL4_9HYPO_268505 and tr_A0A369HH83_A0A369HH83_9HYPO_2039874 are exactly identical!
WARNING: Sequences tr_A0A0A1NYN6_A0A0A1NYN6_9FUNG_58291 and tr_A0A2G4SJB8_A0A2G4SJB8_9FUNG_1340429 are exactly identical!
WARNING: Sequences tr_A0A0A1NYN6_A0A0A1NYN6_9FUNG_58291 and tr_A0A367JUK0_A0A367JUK0_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A0A1NYN6_A0A0A1NYN6_9FUNG_58291 and tr_A0A367K334_A0A367K334_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A0R3WIG2_A0A0R3WIG2_HYDTA_6205 and tr_A0A0R3VVD2_A0A0R3VVD2_TAEAS_60517 are exactly identical!
WARNING: Sequences tr_A0A151P4Y3_A0A151P4Y3_ALLMI_8496 and tr_A0A1U8DN17_A0A1U8DN17_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A0L9VH82_A0A0L9VH82_PHAAN_3914 and tr_A0A1S3VKA5_A0A1S3VKA5_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_A0A0L9VH82_A0A0L9VH82_PHAAN_3914 and tr_A0A3Q0FEY1_A0A3Q0FEY1_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_A0A0L9VH82_A0A0L9VH82_PHAAN_3914 and tr_A0A3Q0FJ94_A0A3Q0FJ94_VIGRR_3916 are exactly identical!
WARNING: Sequences tr_A0A0D1ZE16_A0A0D1ZE16_9EURO_1016849 and tr_A0A0D2FL50_A0A0D2FL50_9EURO_1442369 are exactly identical!
WARNING: Sequences tr_A0A137QCE0_A0A137QCE0_9AGAR_1714833 and tr_A0A137QCE9_A0A137QCE9_9AGAR_1714833 are exactly identical!
WARNING: Sequences tr_A0A1S4B386_A0A1S4B386_TOBAC_4097 and tr_A0A1S4DCN2_A0A1S4DCN2_TOBAC_4097 are exactly identical!
WARNING: Sequences tr_A0A1S4B386_A0A1S4B386_TOBAC_4097 and tr_A0A314L1S8_A0A314L1S8_NICAT_49451 are exactly identical!
WARNING: Sequences tr_A0A1S4B386_A0A1S4B386_TOBAC_4097 and tr_A0A1U7WKG7_A0A1U7WKG7_NICSY_4096 are exactly identical!
WARNING: Sequences tr_A0A1S3I9F9_A0A1S3I9F9_LINUN_7574 and tr_A0A2R2MPS5_A0A2R2MPS5_LINUN_7574 are exactly identical!
WARNING: Sequences tr_A0A1S3LC32_A0A1S3LC32_SALSA_8030 and tr_A0A060WQE8_A0A060WQE8_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1B8AL28_A0A1B8AL28_FUSPO_36050 and tr_A0A2L2TT48_A0A2L2TT48_9HYPO_56646 are exactly identical!
WARNING: Sequences tr_A0A1B8AL28_A0A1B8AL28_FUSPO_36050 and tr_A0A366QZV9_A0A366QZV9_9HYPO_2109339 are exactly identical!
WARNING: Sequences tr_A0A1B7N2G6_A0A1B7N2G6_9HOMO_1314800 and tr_A0A1J8Q0A7_A0A1J8Q0A7_9HOMO_180088 are exactly identical!
WARNING: Sequences tr_A0A1M2VB97_A0A1M2VB97_TRAPU_154538 and tr_A0A1M2VGH4_A0A1M2VGH4_TRAPU_154538 are exactly identical!
WARNING: Sequences tr_A0A1M2VB97_A0A1M2VB97_TRAPU_154538 and tr_A0A1M2VKF1_A0A1M2VKF1_TRAPU_154538 are exactly identical!
WARNING: Sequences tr_A0A226MK16_A0A226MK16_CALSU_9009 and tr_A0A226PHI4_A0A226PHI4_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2H3DF44_A0A2H3DF44_ARMGA_47427 and tr_A0A2H3BS18_A0A2H3BS18_9AGAR_1076256 are exactly identical!
WARNING: Sequences tr_A0A2H3DF44_A0A2H3DF44_ARMGA_47427 and tr_A0A284QQH3_A0A284QQH3_9AGAR_47428 are exactly identical!
WARNING: Sequences tr_A0A2G2XXQ7_A0A2G2XXQ7_CAPAN_4072 and tr_A0A2G3AWG3_A0A2G3AWG3_CAPCH_80379 are exactly identical!
WARNING: Sequences tr_A0A2P5FDK1_A0A2P5FDK1_TREOI_63057 and tr_A0A2P5CGU2_A0A2P5CGU2_PARAD_3476 are exactly identical!
WARNING: Sequences tr_A0A2R6Q6F6_A0A2R6Q6F6_ACTCH_1590841 and tr_A0A2R6RGL3_A0A2R6RGL3_ACTCH_1590841 are exactly identical!
WARNING: Duplicate sequences found: 143

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14674/3_mltree/Q14674.raxml.reduced.phy

Alignment comprises 1 partitions and 37 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 37 / 37
Gaps: 1.33 %
Invariant sites: 2.70 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14674/3_mltree/Q14674.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 458 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 37 / 2960
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -25099.327156] Initial branch length optimization
[00:00:00 -20513.812623] Model parameter optimization (eps = 10.000000)
[00:00:06 -20465.315367] AUTODETECT spr round 1 (radius: 5)
[00:00:18 -14030.808620] AUTODETECT spr round 2 (radius: 10)
[00:00:31 -10918.992272] AUTODETECT spr round 3 (radius: 15)
[00:00:47 -9754.500635] AUTODETECT spr round 4 (radius: 20)
[00:01:05 -8986.103962] AUTODETECT spr round 5 (radius: 25)
[00:01:25 -8868.705715] SPR radius for FAST iterations: 25 (autodetect)
[00:01:25 -8868.705715] Model parameter optimization (eps = 3.000000)
[00:01:31 -8848.339444] FAST spr round 1 (radius: 25)
[00:01:44 -7660.860806] FAST spr round 2 (radius: 25)
[00:01:57 -7557.358930] FAST spr round 3 (radius: 25)
[00:02:08 -7547.077315] FAST spr round 4 (radius: 25)
[00:02:20 -7546.789084] FAST spr round 5 (radius: 25)
[00:02:31 -7546.789067] Model parameter optimization (eps = 1.000000)
[00:02:32 -7545.959731] SLOW spr round 1 (radius: 5)
[00:02:46 -7545.193792] SLOW spr round 2 (radius: 5)
[00:02:59 -7545.192988] SLOW spr round 3 (radius: 10)
[00:03:13 -7540.889753] SLOW spr round 4 (radius: 5)
[00:03:30 -7540.889576] SLOW spr round 5 (radius: 10)
[00:03:45 -7540.889476] SLOW spr round 6 (radius: 15)
[00:04:02 -7540.572013] SLOW spr round 7 (radius: 5)
[00:04:20 -7539.903395] SLOW spr round 8 (radius: 5)
[00:04:35 -7539.547361] SLOW spr round 9 (radius: 5)
[00:04:49 -7539.480518] SLOW spr round 10 (radius: 10)
[00:05:03 -7539.480512] SLOW spr round 11 (radius: 15)
[00:05:20 -7539.480509] SLOW spr round 12 (radius: 20)
[00:05:40 -7536.296586] SLOW spr round 13 (radius: 5)
[00:05:58 -7494.757859] SLOW spr round 14 (radius: 5)
[00:06:14 -7494.756078] SLOW spr round 15 (radius: 10)
[00:06:28 -7494.755743] SLOW spr round 16 (radius: 15)
[00:06:45 -7494.755670] SLOW spr round 17 (radius: 20)
[00:07:05 -7494.755655] SLOW spr round 18 (radius: 25)
[00:07:28 -7492.238653] SLOW spr round 19 (radius: 5)
[00:07:46 -7483.978373] SLOW spr round 20 (radius: 5)
[00:08:03 -7483.977365] SLOW spr round 21 (radius: 10)
[00:08:16 -7483.977157] SLOW spr round 22 (radius: 15)
[00:08:34 -7483.977104] SLOW spr round 23 (radius: 20)
[00:08:53 -7483.977092] SLOW spr round 24 (radius: 25)
[00:09:16 -7476.717871] SLOW spr round 25 (radius: 5)
[00:09:35 -7468.767448] SLOW spr round 26 (radius: 5)
[00:09:52 -7462.299336] SLOW spr round 27 (radius: 5)
[00:10:07 -7462.179286] SLOW spr round 28 (radius: 5)
[00:10:21 -7462.177130] SLOW spr round 29 (radius: 10)
[00:10:34 -7462.177009] SLOW spr round 30 (radius: 15)
[00:10:50 -7462.176997] SLOW spr round 31 (radius: 20)
[00:11:09 -7462.176996] SLOW spr round 32 (radius: 25)
[00:11:32 -7462.176996] Model parameter optimization (eps = 0.100000)

[00:11:33] ML tree search #1, logLikelihood: -7462.163345

[00:11:33 -25301.404292] Initial branch length optimization
[00:11:33 -20738.054635] Model parameter optimization (eps = 10.000000)
[00:11:40 -20703.282790] AUTODETECT spr round 1 (radius: 5)
[00:11:52 -14484.908989] AUTODETECT spr round 2 (radius: 10)
[00:12:06 -10647.485466] AUTODETECT spr round 3 (radius: 15)
[00:12:21 -9638.609743] AUTODETECT spr round 4 (radius: 20)
[00:12:40 -9050.813616] AUTODETECT spr round 5 (radius: 25)
[00:13:00 -8755.839612] SPR radius for FAST iterations: 25 (autodetect)
[00:13:00 -8755.839612] Model parameter optimization (eps = 3.000000)
[00:13:05 -8750.074261] FAST spr round 1 (radius: 25)
[00:13:19 -7623.824547] FAST spr round 2 (radius: 25)
[00:13:31 -7476.542522] FAST spr round 3 (radius: 25)
[00:13:44 -7462.851687] FAST spr round 4 (radius: 25)
[00:13:55 -7462.256453] FAST spr round 5 (radius: 25)
[00:14:06 -7462.254558] Model parameter optimization (eps = 1.000000)
[00:14:08 -7461.922598] SLOW spr round 1 (radius: 5)
[00:14:22 -7457.664481] SLOW spr round 2 (radius: 5)
[00:14:36 -7456.343343] SLOW spr round 3 (radius: 5)
[00:14:49 -7456.342607] SLOW spr round 4 (radius: 10)
[00:15:03 -7456.068959] SLOW spr round 5 (radius: 5)
[00:15:20 -7456.068957] SLOW spr round 6 (radius: 10)
[00:15:35 -7456.068957] SLOW spr round 7 (radius: 15)
[00:15:54 -7453.141896] SLOW spr round 8 (radius: 5)
[00:16:13 -7452.267761] SLOW spr round 9 (radius: 5)
[00:16:30 -7452.082375] SLOW spr round 10 (radius: 5)
[00:16:44 -7452.081698] SLOW spr round 11 (radius: 10)
[00:16:59 -7448.158916] SLOW spr round 12 (radius: 5)
[00:17:16 -7447.800225] SLOW spr round 13 (radius: 5)
[00:17:33 -7447.800211] SLOW spr round 14 (radius: 10)
[00:17:47 -7447.800199] SLOW spr round 15 (radius: 15)
[00:18:05 -7447.800197] SLOW spr round 16 (radius: 20)
[00:18:28 -7447.800196] SLOW spr round 17 (radius: 25)
[00:18:53 -7447.800196] Model parameter optimization (eps = 0.100000)

[00:18:55] ML tree search #2, logLikelihood: -7447.722621

[00:18:55 -25158.902697] Initial branch length optimization
[00:18:55 -20510.372093] Model parameter optimization (eps = 10.000000)
[00:19:01 -20470.162508] AUTODETECT spr round 1 (radius: 5)
[00:19:13 -14010.434837] AUTODETECT spr round 2 (radius: 10)
[00:19:28 -10737.853642] AUTODETECT spr round 3 (radius: 15)
[00:19:45 -9510.151979] AUTODETECT spr round 4 (radius: 20)
[00:20:04 -8995.045650] AUTODETECT spr round 5 (radius: 25)
[00:20:24 -8699.622377] SPR radius for FAST iterations: 25 (autodetect)
[00:20:24 -8699.622377] Model parameter optimization (eps = 3.000000)
[00:20:28 -8688.445355] FAST spr round 1 (radius: 25)
[00:20:42 -7795.869288] FAST spr round 2 (radius: 25)
[00:20:56 -7696.147422] FAST spr round 3 (radius: 25)
[00:21:08 -7688.767722] FAST spr round 4 (radius: 25)
[00:21:21 -7687.585611] FAST spr round 5 (radius: 25)
[00:21:33 -7687.584833] Model parameter optimization (eps = 1.000000)
[00:21:37 -7685.683214] SLOW spr round 1 (radius: 5)
[00:21:53 -7681.361213] SLOW spr round 2 (radius: 5)
[00:22:08 -7679.510423] SLOW spr round 3 (radius: 5)
[00:22:22 -7679.502396] SLOW spr round 4 (radius: 10)
[00:22:35 -7679.271220] SLOW spr round 5 (radius: 5)
[00:22:53 -7678.978960] SLOW spr round 6 (radius: 5)
[00:23:09 -7677.982409] SLOW spr round 7 (radius: 5)
[00:23:24 -7677.908272] SLOW spr round 8 (radius: 10)
[00:23:38 -7677.906954] SLOW spr round 9 (radius: 15)
[00:23:56 -7677.906928] SLOW spr round 10 (radius: 20)
[00:24:16 -7677.529398] SLOW spr round 11 (radius: 5)
[00:24:35 -7677.529247] SLOW spr round 12 (radius: 10)
[00:24:51 -7677.529245] SLOW spr round 13 (radius: 15)
[00:25:09 -7677.529245] SLOW spr round 14 (radius: 20)
[00:25:29 -7677.529244] SLOW spr round 15 (radius: 25)
[00:25:49 -7677.529244] Model parameter optimization (eps = 0.100000)

[00:25:51] ML tree search #3, logLikelihood: -7677.513036

[00:25:51 -25379.365663] Initial branch length optimization
[00:25:51 -20701.889785] Model parameter optimization (eps = 10.000000)
[00:25:56 -20652.591184] AUTODETECT spr round 1 (radius: 5)
[00:26:08 -14175.341743] AUTODETECT spr round 2 (radius: 10)
[00:26:23 -10993.600778] AUTODETECT spr round 3 (radius: 15)
[00:26:39 -10086.913027] AUTODETECT spr round 4 (radius: 20)
[00:26:57 -9505.245583] AUTODETECT spr round 5 (radius: 25)
[00:27:17 -9307.067462] SPR radius for FAST iterations: 25 (autodetect)
[00:27:17 -9307.067462] Model parameter optimization (eps = 3.000000)
[00:27:22 -9281.763028] FAST spr round 1 (radius: 25)
[00:27:36 -7954.758627] FAST spr round 2 (radius: 25)
[00:27:49 -7903.726355] FAST spr round 3 (radius: 25)
[00:28:01 -7863.246079] FAST spr round 4 (radius: 25)
[00:28:12 -7863.244191] Model parameter optimization (eps = 1.000000)
[00:28:17 -7861.461116] SLOW spr round 1 (radius: 5)
[00:28:31 -7855.801627] SLOW spr round 2 (radius: 5)
[00:28:45 -7855.800789] SLOW spr round 3 (radius: 10)
[00:28:59 -7854.935351] SLOW spr round 4 (radius: 5)
[00:29:16 -7854.935157] SLOW spr round 5 (radius: 10)
[00:29:31 -7854.935148] SLOW spr round 6 (radius: 15)
[00:29:50 -7848.531087] SLOW spr round 7 (radius: 5)
[00:30:09 -7844.768942] SLOW spr round 8 (radius: 5)
[00:30:25 -7844.768642] SLOW spr round 9 (radius: 10)
[00:30:39 -7844.768617] SLOW spr round 10 (radius: 15)
[00:30:58 -7841.834172] SLOW spr round 11 (radius: 5)
[00:31:17 -7841.117444] SLOW spr round 12 (radius: 5)
[00:31:33 -7841.029931] SLOW spr round 13 (radius: 10)
[00:31:48 -7837.780874] SLOW spr round 14 (radius: 5)
[00:32:05 -7837.780778] SLOW spr round 15 (radius: 10)
[00:32:20 -7837.780771] SLOW spr round 16 (radius: 15)
[00:32:39 -7837.780770] SLOW spr round 17 (radius: 20)
[00:33:04 -7745.143265] SLOW spr round 18 (radius: 5)
[00:33:24 -7676.972954] SLOW spr round 19 (radius: 5)
[00:33:40 -7676.971062] SLOW spr round 20 (radius: 10)
[00:33:55 -7663.629756] SLOW spr round 21 (radius: 5)
[00:34:13 -7660.962001] SLOW spr round 22 (radius: 5)
[00:34:28 -7660.961981] SLOW spr round 23 (radius: 10)
[00:34:43 -7660.961977] SLOW spr round 24 (radius: 15)
[00:35:01 -7660.961976] SLOW spr round 25 (radius: 20)
[00:35:22 -7660.322613] SLOW spr round 26 (radius: 5)
[00:35:41 -7660.322166] SLOW spr round 27 (radius: 10)
[00:35:57 -7660.322108] SLOW spr round 28 (radius: 15)
[00:36:15 -7660.322101] SLOW spr round 29 (radius: 20)
[00:36:36 -7660.322099] SLOW spr round 30 (radius: 25)
[00:37:04 -7636.583596] SLOW spr round 31 (radius: 5)
[00:37:24 -7540.346816] SLOW spr round 32 (radius: 5)
[00:37:41 -7479.377059] SLOW spr round 33 (radius: 5)
[00:37:57 -7472.656977] SLOW spr round 34 (radius: 5)
[00:38:11 -7466.843886] SLOW spr round 35 (radius: 5)
[00:38:25 -7466.843203] SLOW spr round 36 (radius: 10)
[00:38:39 -7459.526573] SLOW spr round 37 (radius: 5)
[00:38:57 -7417.489750] SLOW spr round 38 (radius: 5)
[00:39:12 -7417.489580] SLOW spr round 39 (radius: 10)
[00:39:27 -7417.489577] SLOW spr round 40 (radius: 15)
[00:39:45 -7417.489576] SLOW spr round 41 (radius: 20)
[00:40:07 -7415.564087] SLOW spr round 42 (radius: 5)
[00:40:26 -7414.816877] SLOW spr round 43 (radius: 5)
[00:40:43 -7414.816681] SLOW spr round 44 (radius: 10)
[00:40:57 -7414.816677] SLOW spr round 45 (radius: 15)
[00:41:16 -7414.816676] SLOW spr round 46 (radius: 20)
[00:41:38 -7414.816676] SLOW spr round 47 (radius: 25)
[00:42:04 -7414.543931] SLOW spr round 48 (radius: 5)
[00:42:23 -7414.543760] SLOW spr round 49 (radius: 10)
[00:42:40 -7414.543719] SLOW spr round 50 (radius: 15)
[00:42:58 -7414.543708] SLOW spr round 51 (radius: 20)
[00:43:20 -7414.543704] SLOW spr round 52 (radius: 25)
[00:43:47 -7414.543703] Model parameter optimization (eps = 0.100000)

[00:43:49] ML tree search #4, logLikelihood: -7413.694368

[00:43:49 -25323.452248] Initial branch length optimization
[00:43:50 -20693.099169] Model parameter optimization (eps = 10.000000)
[00:43:54 -20647.059399] AUTODETECT spr round 1 (radius: 5)
[00:44:06 -14177.350141] AUTODETECT spr round 2 (radius: 10)
[00:44:20 -10661.208048] AUTODETECT spr round 3 (radius: 15)
[00:44:36 -9473.764317] AUTODETECT spr round 4 (radius: 20)
[00:44:53 -8891.346149] AUTODETECT spr round 5 (radius: 25)
[00:45:13 -8687.652932] SPR radius for FAST iterations: 25 (autodetect)
[00:45:13 -8687.652932] Model parameter optimization (eps = 3.000000)
[00:45:21 -8606.190663] FAST spr round 1 (radius: 25)
[00:45:35 -7641.086233] FAST spr round 2 (radius: 25)
[00:45:48 -7581.697065] FAST spr round 3 (radius: 25)
[00:46:01 -7557.113928] FAST spr round 4 (radius: 25)
[00:46:13 -7535.496318] FAST spr round 5 (radius: 25)
[00:46:24 -7532.487225] FAST spr round 6 (radius: 25)
[00:46:35 -7531.801530] FAST spr round 7 (radius: 25)
[00:46:46 -7531.801515] Model parameter optimization (eps = 1.000000)
[00:46:50 -7530.298677] SLOW spr round 1 (radius: 5)
[00:47:03 -7528.194314] SLOW spr round 2 (radius: 5)
[00:47:17 -7527.511953] SLOW spr round 3 (radius: 5)
[00:47:30 -7527.510843] SLOW spr round 4 (radius: 10)
[00:47:44 -7526.570928] SLOW spr round 5 (radius: 5)
[00:48:01 -7526.300628] SLOW spr round 6 (radius: 5)
[00:48:16 -7526.299854] SLOW spr round 7 (radius: 10)
[00:48:30 -7524.929855] SLOW spr round 8 (radius: 5)
[00:48:47 -7524.929605] SLOW spr round 9 (radius: 10)
[00:49:02 -7524.929601] SLOW spr round 10 (radius: 15)
[00:49:20 -7519.976252] SLOW spr round 11 (radius: 5)
[00:49:38 -7519.379953] SLOW spr round 12 (radius: 5)
[00:49:53 -7519.379950] SLOW spr round 13 (radius: 10)
[00:50:08 -7517.710504] SLOW spr round 14 (radius: 5)
[00:50:24 -7517.710089] SLOW spr round 15 (radius: 10)
[00:50:39 -7517.710078] SLOW spr round 16 (radius: 15)
[00:50:56 -7517.016419] SLOW spr round 17 (radius: 5)
[00:51:14 -7514.654770] SLOW spr round 18 (radius: 5)
[00:51:30 -7512.808311] SLOW spr round 19 (radius: 5)
[00:51:44 -7512.365070] SLOW spr round 20 (radius: 5)
[00:51:57 -7512.364290] SLOW spr round 21 (radius: 10)
[00:52:12 -7512.364142] SLOW spr round 22 (radius: 15)
[00:52:33 -7512.038039] SLOW spr round 23 (radius: 5)
[00:52:52 -7511.816256] SLOW spr round 24 (radius: 5)
[00:53:08 -7511.816017] SLOW spr round 25 (radius: 10)
[00:53:22 -7511.815961] SLOW spr round 26 (radius: 15)
[00:53:41 -7511.815943] SLOW spr round 27 (radius: 20)
[00:54:03 -7502.828265] SLOW spr round 28 (radius: 5)
[00:54:21 -7502.827959] SLOW spr round 29 (radius: 10)
[00:54:36 -7502.827955] SLOW spr round 30 (radius: 15)
[00:54:54 -7502.827955] SLOW spr round 31 (radius: 20)
[00:55:17 -7502.827955] SLOW spr round 32 (radius: 25)
[00:55:43 -7502.087544] SLOW spr round 33 (radius: 5)
[00:56:02 -7500.528528] SLOW spr round 34 (radius: 5)
[00:56:17 -7500.528280] SLOW spr round 35 (radius: 10)
[00:56:31 -7500.528278] SLOW spr round 36 (radius: 15)
[00:56:50 -7500.528278] SLOW spr round 37 (radius: 20)
[00:57:12 -7500.528278] SLOW spr round 38 (radius: 25)
[00:57:38 -7500.528278] Model parameter optimization (eps = 0.100000)

[00:57:39] ML tree search #5, logLikelihood: -7500.441630

[00:57:39 -25298.852649] Initial branch length optimization
[00:57:40 -20707.898059] Model parameter optimization (eps = 10.000000)
[00:57:47 -20646.752183] AUTODETECT spr round 1 (radius: 5)
[00:57:58 -14006.450112] AUTODETECT spr round 2 (radius: 10)
[00:58:12 -10461.999107] AUTODETECT spr round 3 (radius: 15)
[00:58:27 -9276.584392] AUTODETECT spr round 4 (radius: 20)
[00:58:46 -8625.323018] AUTODETECT spr round 5 (radius: 25)
[00:59:05 -8455.547612] SPR radius for FAST iterations: 25 (autodetect)
[00:59:05 -8455.547612] Model parameter optimization (eps = 3.000000)
[00:59:09 -8443.656507] FAST spr round 1 (radius: 25)
[00:59:22 -7695.561545] FAST spr round 2 (radius: 25)
[00:59:35 -7607.362336] FAST spr round 3 (radius: 25)
[00:59:46 -7606.303649] FAST spr round 4 (radius: 25)
[00:59:58 -7605.279544] FAST spr round 5 (radius: 25)
[01:00:09 -7603.957011] FAST spr round 6 (radius: 25)
[01:00:20 -7603.956607] Model parameter optimization (eps = 1.000000)
[01:00:23 -7601.092085] SLOW spr round 1 (radius: 5)
[01:00:37 -7598.306002] SLOW spr round 2 (radius: 5)
[01:00:50 -7597.806365] SLOW spr round 3 (radius: 5)
[01:01:04 -7597.805778] SLOW spr round 4 (radius: 10)
[01:01:17 -7596.911105] SLOW spr round 5 (radius: 5)
[01:01:35 -7593.754444] SLOW spr round 6 (radius: 5)
[01:01:50 -7592.193976] SLOW spr round 7 (radius: 5)
[01:02:05 -7590.175804] SLOW spr round 8 (radius: 5)
[01:02:19 -7589.188201] SLOW spr round 9 (radius: 5)
[01:02:32 -7589.188179] SLOW spr round 10 (radius: 10)
[01:02:46 -7586.853081] SLOW spr round 11 (radius: 5)
[01:03:03 -7585.175859] SLOW spr round 12 (radius: 5)
[01:03:18 -7585.175831] SLOW spr round 13 (radius: 10)
[01:03:32 -7585.175830] SLOW spr round 14 (radius: 15)
[01:03:50 -7567.592114] SLOW spr round 15 (radius: 5)
[01:04:08 -7561.235062] SLOW spr round 16 (radius: 5)
[01:04:24 -7558.130762] SLOW spr round 17 (radius: 5)
[01:04:39 -7558.101140] SLOW spr round 18 (radius: 10)
[01:04:52 -7558.100674] SLOW spr round 19 (radius: 15)
[01:05:10 -7558.100647] SLOW spr round 20 (radius: 20)
[01:05:30 -7558.100645] SLOW spr round 21 (radius: 25)
[01:05:51 -7551.865143] SLOW spr round 22 (radius: 5)
[01:06:09 -7551.425112] SLOW spr round 23 (radius: 5)
[01:06:25 -7550.878515] SLOW spr round 24 (radius: 5)
[01:06:40 -7550.871553] SLOW spr round 25 (radius: 10)
[01:06:54 -7550.871385] SLOW spr round 26 (radius: 15)
[01:07:11 -7550.871380] SLOW spr round 27 (radius: 20)
[01:07:31 -7550.871380] SLOW spr round 28 (radius: 25)
[01:07:51 -7550.871380] Model parameter optimization (eps = 0.100000)

[01:07:53] ML tree search #6, logLikelihood: -7550.736678

[01:07:53 -25158.636491] Initial branch length optimization
[01:07:53 -20651.555566] Model parameter optimization (eps = 10.000000)
[01:07:59 -20588.791523] AUTODETECT spr round 1 (radius: 5)
[01:08:11 -14266.690069] AUTODETECT spr round 2 (radius: 10)
[01:08:25 -11064.569418] AUTODETECT spr round 3 (radius: 15)
[01:08:41 -10051.619452] AUTODETECT spr round 4 (radius: 20)
[01:08:59 -9686.725833] AUTODETECT spr round 5 (radius: 25)
[01:09:17 -9086.975459] SPR radius for FAST iterations: 25 (autodetect)
[01:09:17 -9086.975459] Model parameter optimization (eps = 3.000000)
[01:09:23 -9071.856801] FAST spr round 1 (radius: 25)
[01:09:37 -7746.293680] FAST spr round 2 (radius: 25)
[01:09:50 -7570.839341] FAST spr round 3 (radius: 25)
[01:10:02 -7561.769793] FAST spr round 4 (radius: 25)
[01:10:13 -7559.010568] FAST spr round 5 (radius: 25)
[01:10:23 -7559.010568] Model parameter optimization (eps = 1.000000)
[01:10:27 -7555.035010] SLOW spr round 1 (radius: 5)
[01:10:41 -7552.658252] SLOW spr round 2 (radius: 5)
[01:10:55 -7551.007549] SLOW spr round 3 (radius: 5)
[01:11:08 -7549.286797] SLOW spr round 4 (radius: 5)
[01:11:22 -7549.286785] SLOW spr round 5 (radius: 10)
[01:11:36 -7540.414682] SLOW spr round 6 (radius: 5)
[01:11:54 -7536.429793] SLOW spr round 7 (radius: 5)
[01:12:10 -7519.637065] SLOW spr round 8 (radius: 5)
[01:12:25 -7519.335770] SLOW spr round 9 (radius: 5)
[01:12:39 -7519.335640] SLOW spr round 10 (radius: 10)
[01:12:53 -7519.335634] SLOW spr round 11 (radius: 15)
[01:13:12 -7513.788892] SLOW spr round 12 (radius: 5)
[01:13:30 -7513.788891] SLOW spr round 13 (radius: 10)
[01:13:46 -7506.993763] SLOW spr round 14 (radius: 5)
[01:14:03 -7503.524006] SLOW spr round 15 (radius: 5)
[01:14:18 -7503.511146] SLOW spr round 16 (radius: 10)
[01:14:32 -7503.510308] SLOW spr round 17 (radius: 15)
[01:14:51 -7503.510156] SLOW spr round 18 (radius: 20)
[01:15:15 -7503.392152] SLOW spr round 19 (radius: 5)
[01:15:33 -7503.392147] SLOW spr round 20 (radius: 10)
[01:15:49 -7503.392146] SLOW spr round 21 (radius: 15)
[01:16:08 -7503.392146] SLOW spr round 22 (radius: 20)
[01:16:32 -7503.392146] SLOW spr round 23 (radius: 25)
[01:16:59 -7503.392146] Model parameter optimization (eps = 0.100000)

[01:17:01] ML tree search #7, logLikelihood: -7503.259687

[01:17:01 -25328.651345] Initial branch length optimization
[01:17:02 -20560.679515] Model parameter optimization (eps = 10.000000)
[01:17:07 -20512.492323] AUTODETECT spr round 1 (radius: 5)
[01:17:19 -14250.782819] AUTODETECT spr round 2 (radius: 10)
[01:17:33 -10653.402386] AUTODETECT spr round 3 (radius: 15)
[01:17:50 -9456.196158] AUTODETECT spr round 4 (radius: 20)
[01:18:09 -8820.186084] AUTODETECT spr round 5 (radius: 25)
[01:18:31 -8551.600117] SPR radius for FAST iterations: 25 (autodetect)
[01:18:31 -8551.600117] Model parameter optimization (eps = 3.000000)
[01:18:36 -8528.151124] FAST spr round 1 (radius: 25)
[01:18:50 -7535.133471] FAST spr round 2 (radius: 25)
[01:19:04 -7484.151545] FAST spr round 3 (radius: 25)
[01:19:16 -7481.988645] FAST spr round 4 (radius: 25)
[01:19:27 -7480.865108] FAST spr round 5 (radius: 25)
[01:19:38 -7480.865088] Model parameter optimization (eps = 1.000000)
[01:19:40 -7480.358330] SLOW spr round 1 (radius: 5)
[01:19:55 -7476.142421] SLOW spr round 2 (radius: 5)
[01:20:09 -7472.242002] SLOW spr round 3 (radius: 5)
[01:20:23 -7472.144534] SLOW spr round 4 (radius: 10)
[01:20:37 -7472.144243] SLOW spr round 5 (radius: 15)
[01:20:56 -7460.024437] SLOW spr round 6 (radius: 5)
[01:21:15 -7455.140955] SLOW spr round 7 (radius: 5)
[01:21:30 -7454.624651] SLOW spr round 8 (radius: 5)
[01:21:45 -7454.623607] SLOW spr round 9 (radius: 10)
[01:21:59 -7454.623526] SLOW spr round 10 (radius: 15)
[01:22:17 -7454.436677] SLOW spr round 11 (radius: 5)
[01:22:35 -7454.436411] SLOW spr round 12 (radius: 10)
[01:22:51 -7451.460705] SLOW spr round 13 (radius: 5)
[01:23:08 -7451.460558] SLOW spr round 14 (radius: 10)
[01:23:23 -7451.460556] SLOW spr round 15 (radius: 15)
[01:23:41 -7451.460556] SLOW spr round 16 (radius: 20)
[01:24:05 -7451.460556] SLOW spr round 17 (radius: 25)
[01:24:30 -7451.460556] Model parameter optimization (eps = 0.100000)

[01:24:33] ML tree search #8, logLikelihood: -7451.322056

[01:24:34 -25127.584007] Initial branch length optimization
[01:24:34 -20553.836621] Model parameter optimization (eps = 10.000000)
[01:24:40 -20508.499304] AUTODETECT spr round 1 (radius: 5)
[01:24:52 -14424.523591] AUTODETECT spr round 2 (radius: 10)
[01:25:06 -10409.599977] AUTODETECT spr round 3 (radius: 15)
[01:25:23 -9251.574279] AUTODETECT spr round 4 (radius: 20)
[01:25:39 -8845.681757] AUTODETECT spr round 5 (radius: 25)
[01:25:57 -8831.430610] SPR radius for FAST iterations: 25 (autodetect)
[01:25:57 -8831.430610] Model parameter optimization (eps = 3.000000)
[01:26:02 -8782.941388] FAST spr round 1 (radius: 25)
[01:26:15 -8055.531567] FAST spr round 2 (radius: 25)
[01:26:28 -8005.341472] FAST spr round 3 (radius: 25)
[01:26:39 -7978.651349] FAST spr round 4 (radius: 25)
[01:26:51 -7975.467516] FAST spr round 5 (radius: 25)
[01:27:02 -7973.833414] FAST spr round 6 (radius: 25)
[01:27:12 -7973.831534] Model parameter optimization (eps = 1.000000)
[01:27:16 -7972.143680] SLOW spr round 1 (radius: 5)
[01:27:31 -7969.388057] SLOW spr round 2 (radius: 5)
[01:27:45 -7968.633166] SLOW spr round 3 (radius: 5)
[01:27:58 -7968.632883] SLOW spr round 4 (radius: 10)
[01:28:12 -7968.632872] SLOW spr round 5 (radius: 15)
[01:28:30 -7968.632870] SLOW spr round 6 (radius: 20)
[01:28:52 -7964.375591] SLOW spr round 7 (radius: 5)
[01:29:10 -7962.453453] SLOW spr round 8 (radius: 5)
[01:29:26 -7962.452841] SLOW spr round 9 (radius: 10)
[01:29:40 -7961.484996] SLOW spr round 10 (radius: 5)
[01:29:57 -7960.856124] SLOW spr round 11 (radius: 5)
[01:30:13 -7960.854508] SLOW spr round 12 (radius: 10)
[01:30:26 -7960.854432] SLOW spr round 13 (radius: 15)
[01:30:44 -7960.854429] SLOW spr round 14 (radius: 20)
[01:31:05 -7960.854427] SLOW spr round 15 (radius: 25)
[01:31:27 -7960.854426] Model parameter optimization (eps = 0.100000)

[01:31:29] ML tree search #9, logLikelihood: -7960.791876

[01:31:29 -25411.373155] Initial branch length optimization
[01:31:29 -20812.167111] Model parameter optimization (eps = 10.000000)
[01:31:34 -20764.225724] AUTODETECT spr round 1 (radius: 5)
[01:31:46 -13855.001830] AUTODETECT spr round 2 (radius: 10)
[01:32:00 -10784.975948] AUTODETECT spr round 3 (radius: 15)
[01:32:17 -9547.360269] AUTODETECT spr round 4 (radius: 20)
[01:32:35 -8962.241955] AUTODETECT spr round 5 (radius: 25)
[01:32:56 -8664.294804] SPR radius for FAST iterations: 25 (autodetect)
[01:32:56 -8664.294804] Model parameter optimization (eps = 3.000000)
[01:32:59 -8655.176517] FAST spr round 1 (radius: 25)
[01:33:12 -7846.536709] FAST spr round 2 (radius: 25)
[01:33:25 -7753.797980] FAST spr round 3 (radius: 25)
[01:33:37 -7747.366913] FAST spr round 4 (radius: 25)
[01:33:49 -7745.344285] FAST spr round 5 (radius: 25)
[01:34:01 -7745.344038] Model parameter optimization (eps = 1.000000)
[01:34:05 -7743.049816] SLOW spr round 1 (radius: 5)
[01:34:19 -7740.167579] SLOW spr round 2 (radius: 5)
[01:34:32 -7740.167281] SLOW spr round 3 (radius: 10)
[01:34:46 -7735.546502] SLOW spr round 4 (radius: 5)
[01:35:03 -7735.536937] SLOW spr round 5 (radius: 10)
[01:35:18 -7732.465139] SLOW spr round 6 (radius: 5)
[01:35:35 -7732.464936] SLOW spr round 7 (radius: 10)
[01:35:49 -7732.464934] SLOW spr round 8 (radius: 15)
[01:36:07 -7730.978433] SLOW spr round 9 (radius: 5)
[01:36:25 -7730.011544] SLOW spr round 10 (radius: 5)
[01:36:41 -7730.011369] SLOW spr round 11 (radius: 10)
[01:36:56 -7730.011351] SLOW spr round 12 (radius: 15)
[01:37:13 -7730.011349] SLOW spr round 13 (radius: 20)
[01:37:33 -7728.909768] SLOW spr round 14 (radius: 5)
[01:37:52 -7726.105376] SLOW spr round 15 (radius: 5)
[01:38:09 -7725.384014] SLOW spr round 16 (radius: 5)
[01:38:24 -7725.382945] SLOW spr round 17 (radius: 10)
[01:38:39 -7724.892377] SLOW spr round 18 (radius: 5)
[01:38:56 -7724.852591] SLOW spr round 19 (radius: 10)
[01:39:11 -7724.852546] SLOW spr round 20 (radius: 15)
[01:39:28 -7693.525088] SLOW spr round 21 (radius: 5)
[01:39:47 -7680.036640] SLOW spr round 22 (radius: 5)
[01:40:03 -7680.033917] SLOW spr round 23 (radius: 10)
[01:40:17 -7680.032661] SLOW spr round 24 (radius: 15)
[01:40:35 -7680.031974] SLOW spr round 25 (radius: 20)
[01:40:55 -7680.031572] SLOW spr round 26 (radius: 25)
[01:41:19 -7632.304161] SLOW spr round 27 (radius: 5)
[01:41:41 -7591.633779] SLOW spr round 28 (radius: 5)
[01:41:59 -7560.527420] SLOW spr round 29 (radius: 5)
[01:42:14 -7513.716378] SLOW spr round 30 (radius: 5)
[01:42:30 -7512.705404] SLOW spr round 31 (radius: 5)
[01:42:44 -7512.705216] SLOW spr round 32 (radius: 10)
[01:42:58 -7512.705192] SLOW spr round 33 (radius: 15)
[01:43:17 -7484.522302] SLOW spr round 34 (radius: 5)
[01:43:35 -7447.272155] SLOW spr round 35 (radius: 5)
[01:43:51 -7446.374007] SLOW spr round 36 (radius: 5)
[01:44:06 -7441.768986] SLOW spr round 37 (radius: 5)
[01:44:20 -7441.768007] SLOW spr round 38 (radius: 10)
[01:44:34 -7441.767993] SLOW spr round 39 (radius: 15)
[01:44:51 -7441.767993] SLOW spr round 40 (radius: 20)
[01:45:11 -7439.064542] SLOW spr round 41 (radius: 5)
[01:45:28 -7439.018147] SLOW spr round 42 (radius: 10)
[01:45:44 -7439.017770] SLOW spr round 43 (radius: 15)
[01:46:01 -7439.017769] SLOW spr round 44 (radius: 20)
[01:46:20 -7439.017769] SLOW spr round 45 (radius: 25)
[01:46:42 -7439.017769] Model parameter optimization (eps = 0.100000)

[01:46:47] ML tree search #10, logLikelihood: -7437.910365

[01:46:47 -25206.001742] Initial branch length optimization
[01:46:47 -20671.980918] Model parameter optimization (eps = 10.000000)
[01:46:51 -20629.962900] AUTODETECT spr round 1 (radius: 5)
[01:47:03 -14155.647041] AUTODETECT spr round 2 (radius: 10)
[01:47:17 -10704.251462] AUTODETECT spr round 3 (radius: 15)
[01:47:35 -9124.510362] AUTODETECT spr round 4 (radius: 20)
[01:47:54 -8872.011528] AUTODETECT spr round 5 (radius: 25)
[01:48:15 -8785.949650] SPR radius for FAST iterations: 25 (autodetect)
[01:48:15 -8785.949650] Model parameter optimization (eps = 3.000000)
[01:48:20 -8772.789549] FAST spr round 1 (radius: 25)
[01:48:33 -7670.526687] FAST spr round 2 (radius: 25)
[01:48:45 -7544.569789] FAST spr round 3 (radius: 25)
[01:48:57 -7535.270062] FAST spr round 4 (radius: 25)
[01:49:08 -7532.562108] FAST spr round 5 (radius: 25)
[01:49:19 -7532.561267] Model parameter optimization (eps = 1.000000)
[01:49:21 -7531.046046] SLOW spr round 1 (radius: 5)
[01:49:35 -7526.234053] SLOW spr round 2 (radius: 5)
[01:49:48 -7526.232553] SLOW spr round 3 (radius: 10)
[01:50:02 -7522.713120] SLOW spr round 4 (radius: 5)
[01:50:20 -7519.913714] SLOW spr round 5 (radius: 5)
[01:50:35 -7519.912730] SLOW spr round 6 (radius: 10)
[01:50:49 -7519.912609] SLOW spr round 7 (radius: 15)
[01:51:08 -7515.046327] SLOW spr round 8 (radius: 5)
[01:51:26 -7513.755590] SLOW spr round 9 (radius: 5)
[01:51:41 -7513.755496] SLOW spr round 10 (radius: 10)
[01:51:55 -7513.755484] SLOW spr round 11 (radius: 15)
[01:52:14 -7513.755477] SLOW spr round 12 (radius: 20)
[01:52:39 -7464.702547] SLOW spr round 13 (radius: 5)
[01:52:58 -7448.804900] SLOW spr round 14 (radius: 5)
[01:53:14 -7448.804216] SLOW spr round 15 (radius: 10)
[01:53:28 -7447.563745] SLOW spr round 16 (radius: 5)
[01:53:45 -7447.563710] SLOW spr round 17 (radius: 10)
[01:54:00 -7447.563707] SLOW spr round 18 (radius: 15)
[01:54:19 -7447.563707] SLOW spr round 19 (radius: 20)
[01:54:42 -7446.887962] SLOW spr round 20 (radius: 5)
[01:55:01 -7444.919362] SLOW spr round 21 (radius: 5)
[01:55:17 -7444.413587] SLOW spr round 22 (radius: 5)
[01:55:31 -7444.412679] SLOW spr round 23 (radius: 10)
[01:55:45 -7444.412670] SLOW spr round 24 (radius: 15)
[01:56:03 -7444.412669] SLOW spr round 25 (radius: 20)
[01:56:27 -7444.412669] SLOW spr round 26 (radius: 25)
[01:56:54 -7444.412669] Model parameter optimization (eps = 0.100000)

[01:56:57] ML tree search #11, logLikelihood: -7443.262369

[01:56:57 -25610.092104] Initial branch length optimization
[01:56:58 -20879.453649] Model parameter optimization (eps = 10.000000)
[01:57:04 -20842.946244] AUTODETECT spr round 1 (radius: 5)
[01:57:16 -14141.826197] AUTODETECT spr round 2 (radius: 10)
[01:57:30 -11096.062320] AUTODETECT spr round 3 (radius: 15)
[01:57:46 -9479.823576] AUTODETECT spr round 4 (radius: 20)
[01:58:05 -8572.396678] AUTODETECT spr round 5 (radius: 25)
[01:58:23 -8470.207755] SPR radius for FAST iterations: 25 (autodetect)
[01:58:23 -8470.207755] Model parameter optimization (eps = 3.000000)
[01:58:28 -8458.821414] FAST spr round 1 (radius: 25)
[01:58:42 -7636.769293] FAST spr round 2 (radius: 25)
[01:58:54 -7566.930632] FAST spr round 3 (radius: 25)
[01:59:06 -7562.785251] FAST spr round 4 (radius: 25)
[01:59:18 -7561.028825] FAST spr round 5 (radius: 25)
[01:59:29 -7561.028789] Model parameter optimization (eps = 1.000000)
[01:59:31 -7560.250204] SLOW spr round 1 (radius: 5)
[01:59:45 -7558.769437] SLOW spr round 2 (radius: 5)
[01:59:58 -7558.760122] SLOW spr round 3 (radius: 10)
[02:00:12 -7558.759390] SLOW spr round 4 (radius: 15)
[02:00:30 -7552.861689] SLOW spr round 5 (radius: 5)
[02:00:48 -7552.030534] SLOW spr round 6 (radius: 5)
[02:01:04 -7552.030490] SLOW spr round 7 (radius: 10)
[02:01:18 -7552.030490] SLOW spr round 8 (radius: 15)
[02:01:35 -7552.030490] SLOW spr round 9 (radius: 20)
[02:01:56 -7550.676762] SLOW spr round 10 (radius: 5)
[02:02:14 -7550.674669] SLOW spr round 11 (radius: 10)
[02:02:30 -7549.673126] SLOW spr round 12 (radius: 5)
[02:02:46 -7549.573104] SLOW spr round 13 (radius: 5)
[02:03:01 -7549.572888] SLOW spr round 14 (radius: 10)
[02:03:15 -7549.572878] SLOW spr round 15 (radius: 15)
[02:03:32 -7549.572875] SLOW spr round 16 (radius: 20)
[02:03:53 -7549.572875] SLOW spr round 17 (radius: 25)
[02:04:17 -7548.297162] SLOW spr round 18 (radius: 5)
[02:04:34 -7548.259446] SLOW spr round 19 (radius: 10)
[02:04:50 -7548.259443] SLOW spr round 20 (radius: 15)
[02:05:07 -7548.259443] SLOW spr round 21 (radius: 20)
[02:05:28 -7548.259443] SLOW spr round 22 (radius: 25)
[02:05:52 -7548.259443] Model parameter optimization (eps = 0.100000)

[02:05:53] ML tree search #12, logLikelihood: -7548.192344

[02:05:53 -25101.758798] Initial branch length optimization
[02:05:53 -20548.052697] Model parameter optimization (eps = 10.000000)
[02:05:59 -20507.687031] AUTODETECT spr round 1 (radius: 5)
[02:06:11 -14034.834123] AUTODETECT spr round 2 (radius: 10)
[02:06:25 -10711.595835] AUTODETECT spr round 3 (radius: 15)
[02:06:44 -8955.426308] AUTODETECT spr round 4 (radius: 20)
[02:07:01 -8624.922708] AUTODETECT spr round 5 (radius: 25)
[02:07:20 -8532.743264] SPR radius for FAST iterations: 25 (autodetect)
[02:07:20 -8532.743264] Model parameter optimization (eps = 3.000000)
[02:07:24 -8517.245039] FAST spr round 1 (radius: 25)
[02:07:39 -7694.118517] FAST spr round 2 (radius: 25)
[02:07:51 -7608.765866] FAST spr round 3 (radius: 25)
[02:08:04 -7604.828041] FAST spr round 4 (radius: 25)
[02:08:15 -7603.455142] FAST spr round 5 (radius: 25)
[02:08:27 -7603.455048] Model parameter optimization (eps = 1.000000)
[02:08:29 -7603.121516] SLOW spr round 1 (radius: 5)
[02:08:43 -7600.771767] SLOW spr round 2 (radius: 5)
[02:08:57 -7600.771250] SLOW spr round 3 (radius: 10)
[02:09:11 -7600.770730] SLOW spr round 4 (radius: 15)
[02:09:32 -7589.761041] SLOW spr round 5 (radius: 5)
[02:09:51 -7588.305949] SLOW spr round 6 (radius: 5)
[02:10:07 -7588.305279] SLOW spr round 7 (radius: 10)
[02:10:22 -7588.305152] SLOW spr round 8 (radius: 15)
[02:10:42 -7588.305125] SLOW spr round 9 (radius: 20)
[02:11:05 -7583.138138] SLOW spr round 10 (radius: 5)
[02:11:24 -7582.947437] SLOW spr round 11 (radius: 5)
[02:11:41 -7582.946158] SLOW spr round 12 (radius: 10)
[02:11:56 -7582.946095] SLOW spr round 13 (radius: 15)
[02:12:15 -7582.280471] SLOW spr round 14 (radius: 5)
[02:12:34 -7582.200061] SLOW spr round 15 (radius: 10)
[02:12:49 -7582.199535] SLOW spr round 16 (radius: 15)
[02:13:08 -7582.199525] SLOW spr round 17 (radius: 20)
[02:13:31 -7582.199524] SLOW spr round 18 (radius: 25)
[02:13:55 -7582.199524] Model parameter optimization (eps = 0.100000)

[02:13:57] ML tree search #13, logLikelihood: -7582.095336

[02:13:57 -25258.934197] Initial branch length optimization
[02:13:57 -20660.315208] Model parameter optimization (eps = 10.000000)
[02:14:03 -20585.499200] AUTODETECT spr round 1 (radius: 5)
[02:14:15 -13764.383085] AUTODETECT spr round 2 (radius: 10)
[02:14:29 -10970.290576] AUTODETECT spr round 3 (radius: 15)
[02:14:46 -9458.242596] AUTODETECT spr round 4 (radius: 20)
[02:15:04 -8867.566746] AUTODETECT spr round 5 (radius: 25)
[02:15:22 -8717.983860] SPR radius for FAST iterations: 25 (autodetect)
[02:15:22 -8717.983860] Model parameter optimization (eps = 3.000000)
[02:15:30 -8695.060394] FAST spr round 1 (radius: 25)
[02:15:44 -7749.580063] FAST spr round 2 (radius: 25)
[02:15:57 -7702.282556] FAST spr round 3 (radius: 25)
[02:16:10 -7688.092441] FAST spr round 4 (radius: 25)
[02:16:22 -7686.846322] FAST spr round 5 (radius: 25)
[02:16:34 -7686.846094] Model parameter optimization (eps = 1.000000)
[02:16:37 -7685.747594] SLOW spr round 1 (radius: 5)
[02:16:52 -7681.619811] SLOW spr round 2 (radius: 5)
[02:17:06 -7681.534796] SLOW spr round 3 (radius: 10)
[02:17:21 -7681.533627] SLOW spr round 4 (radius: 15)
[02:17:40 -7677.480005] SLOW spr round 5 (radius: 5)
[02:17:59 -7677.479646] SLOW spr round 6 (radius: 10)
[02:18:15 -7674.692425] SLOW spr round 7 (radius: 5)
[02:18:32 -7674.692121] SLOW spr round 8 (radius: 10)
[02:18:47 -7674.692096] SLOW spr round 9 (radius: 15)
[02:19:06 -7674.692089] SLOW spr round 10 (radius: 20)
[02:19:28 -7666.312061] SLOW spr round 11 (radius: 5)
[02:19:48 -7652.292795] SLOW spr round 12 (radius: 5)
[02:20:05 -7652.292442] SLOW spr round 13 (radius: 10)
[02:20:20 -7652.292384] SLOW spr round 14 (radius: 15)
[02:20:38 -7652.292373] SLOW spr round 15 (radius: 20)
[02:21:00 -7652.234909] SLOW spr round 16 (radius: 25)
[02:21:22 -7652.234908] Model parameter optimization (eps = 0.100000)

[02:21:24] ML tree search #14, logLikelihood: -7652.187291

[02:21:24 -25472.626631] Initial branch length optimization
[02:21:24 -20851.080976] Model parameter optimization (eps = 10.000000)
[02:21:30 -20786.121368] AUTODETECT spr round 1 (radius: 5)
[02:21:41 -14141.393843] AUTODETECT spr round 2 (radius: 10)
[02:21:56 -10663.578084] AUTODETECT spr round 3 (radius: 15)
[02:22:13 -9058.025885] AUTODETECT spr round 4 (radius: 20)
[02:22:30 -8766.929244] AUTODETECT spr round 5 (radius: 25)
[02:22:49 -8644.707577] SPR radius for FAST iterations: 25 (autodetect)
[02:22:49 -8644.707577] Model parameter optimization (eps = 3.000000)
[02:22:53 -8629.695176] FAST spr round 1 (radius: 25)
[02:23:07 -7694.544874] FAST spr round 2 (radius: 25)
[02:23:21 -7547.627050] FAST spr round 3 (radius: 25)
[02:23:33 -7526.576372] FAST spr round 4 (radius: 25)
[02:23:45 -7526.575687] Model parameter optimization (eps = 1.000000)
[02:23:49 -7524.111993] SLOW spr round 1 (radius: 5)
[02:24:04 -7518.997766] SLOW spr round 2 (radius: 5)
[02:24:17 -7518.996542] SLOW spr round 3 (radius: 10)
[02:24:32 -7518.490434] SLOW spr round 4 (radius: 5)
[02:24:50 -7515.406203] SLOW spr round 5 (radius: 5)
[02:25:06 -7515.406194] SLOW spr round 6 (radius: 10)
[02:25:20 -7515.406193] SLOW spr round 7 (radius: 15)
[02:25:39 -7515.406189] SLOW spr round 8 (radius: 20)
[02:26:00 -7515.267248] SLOW spr round 9 (radius: 5)
[02:26:19 -7515.266865] SLOW spr round 10 (radius: 10)
[02:26:35 -7515.062891] SLOW spr round 11 (radius: 5)
[02:26:52 -7515.062886] SLOW spr round 12 (radius: 10)
[02:27:08 -7515.062884] SLOW spr round 13 (radius: 15)
[02:27:26 -7515.062883] SLOW spr round 14 (radius: 20)
[02:27:47 -7515.062882] SLOW spr round 15 (radius: 25)
[02:28:11 -7515.062882] Model parameter optimization (eps = 0.100000)

[02:28:12] ML tree search #15, logLikelihood: -7515.044096

[02:28:12 -25042.967598] Initial branch length optimization
[02:28:12 -20555.063915] Model parameter optimization (eps = 10.000000)
[02:28:17 -20484.500058] AUTODETECT spr round 1 (radius: 5)
[02:28:29 -13957.597102] AUTODETECT spr round 2 (radius: 10)
[02:28:44 -10734.436445] AUTODETECT spr round 3 (radius: 15)
[02:29:01 -9043.122249] AUTODETECT spr round 4 (radius: 20)
[02:29:18 -8637.430581] AUTODETECT spr round 5 (radius: 25)
[02:29:37 -8526.843664] SPR radius for FAST iterations: 25 (autodetect)
[02:29:37 -8526.843664] Model parameter optimization (eps = 3.000000)
[02:29:42 -8500.311856] FAST spr round 1 (radius: 25)
[02:29:57 -7576.372368] FAST spr round 2 (radius: 25)
[02:30:10 -7485.207984] FAST spr round 3 (radius: 25)
[02:30:22 -7480.525207] FAST spr round 4 (radius: 25)
[02:30:34 -7480.118161] FAST spr round 5 (radius: 25)
[02:30:45 -7480.116833] Model parameter optimization (eps = 1.000000)
[02:30:50 -7478.685686] SLOW spr round 1 (radius: 5)
[02:31:04 -7476.963894] SLOW spr round 2 (radius: 5)
[02:31:18 -7476.963452] SLOW spr round 3 (radius: 10)
[02:31:33 -7476.130952] SLOW spr round 4 (radius: 5)
[02:31:51 -7475.282087] SLOW spr round 5 (radius: 5)
[02:32:06 -7475.281493] SLOW spr round 6 (radius: 10)
[02:32:21 -7475.281402] SLOW spr round 7 (radius: 15)
[02:32:41 -7475.198867] SLOW spr round 8 (radius: 20)
[02:33:06 -7453.194341] SLOW spr round 9 (radius: 5)
[02:33:26 -7446.875733] SLOW spr round 10 (radius: 5)
[02:33:43 -7446.874986] SLOW spr round 11 (radius: 10)
[02:33:59 -7444.245304] SLOW spr round 12 (radius: 5)
[02:34:17 -7443.855304] SLOW spr round 13 (radius: 5)
[02:34:33 -7443.415031] SLOW spr round 14 (radius: 5)
[02:34:48 -7443.414822] SLOW spr round 15 (radius: 10)
[02:35:02 -7443.414802] SLOW spr round 16 (radius: 15)
[02:35:23 -7442.852586] SLOW spr round 17 (radius: 5)
[02:35:42 -7441.674842] SLOW spr round 18 (radius: 5)
[02:35:58 -7441.674811] SLOW spr round 19 (radius: 10)
[02:36:13 -7441.674806] SLOW spr round 20 (radius: 15)
[02:36:34 -7441.674804] SLOW spr round 21 (radius: 20)
[02:36:58 -7441.674803] SLOW spr round 22 (radius: 25)
[02:37:24 -7441.674803] Model parameter optimization (eps = 0.100000)

[02:37:26] ML tree search #16, logLikelihood: -7440.863292

[02:37:26 -25023.793018] Initial branch length optimization
[02:37:27 -20430.550678] Model parameter optimization (eps = 10.000000)
[02:37:30 -20386.420019] AUTODETECT spr round 1 (radius: 5)
[02:37:43 -13980.857292] AUTODETECT spr round 2 (radius: 10)
[02:37:57 -10776.844687] AUTODETECT spr round 3 (radius: 15)
[02:38:12 -9688.889058] AUTODETECT spr round 4 (radius: 20)
[02:38:29 -8932.419951] AUTODETECT spr round 5 (radius: 25)
[02:38:48 -8636.331597] SPR radius for FAST iterations: 25 (autodetect)
[02:38:48 -8636.331597] Model parameter optimization (eps = 3.000000)
[02:38:52 -8630.516711] FAST spr round 1 (radius: 25)
[02:39:07 -7717.895632] FAST spr round 2 (radius: 25)
[02:39:21 -7532.431332] FAST spr round 3 (radius: 25)
[02:39:34 -7515.452719] FAST spr round 4 (radius: 25)
[02:39:45 -7513.515075] FAST spr round 5 (radius: 25)
[02:39:57 -7513.514827] Model parameter optimization (eps = 1.000000)
[02:40:02 -7512.029893] SLOW spr round 1 (radius: 5)
[02:40:16 -7510.756390] SLOW spr round 2 (radius: 5)
[02:40:30 -7509.732476] SLOW spr round 3 (radius: 5)
[02:40:44 -7509.731656] SLOW spr round 4 (radius: 10)
[02:40:58 -7471.950414] SLOW spr round 5 (radius: 5)
[02:41:16 -7463.533697] SLOW spr round 6 (radius: 5)
[02:41:32 -7462.505064] SLOW spr round 7 (radius: 5)
[02:41:47 -7462.504927] SLOW spr round 8 (radius: 10)
[02:42:01 -7462.330100] SLOW spr round 9 (radius: 5)
[02:42:19 -7462.330099] SLOW spr round 10 (radius: 10)
[02:42:34 -7462.330098] SLOW spr round 11 (radius: 15)
[02:42:53 -7460.667034] SLOW spr round 12 (radius: 5)
[02:43:12 -7458.268091] SLOW spr round 13 (radius: 5)
[02:43:29 -7457.294678] SLOW spr round 14 (radius: 5)
[02:43:43 -7457.294652] SLOW spr round 15 (radius: 10)
[02:43:58 -7457.294648] SLOW spr round 16 (radius: 15)
[02:44:18 -7457.294645] SLOW spr round 17 (radius: 20)
[02:44:40 -7457.294644] SLOW spr round 18 (radius: 25)
[02:45:05 -7457.238316] Model parameter optimization (eps = 0.100000)

[02:45:07] ML tree search #17, logLikelihood: -7457.091955

[02:45:07 -25489.026706] Initial branch length optimization
[02:45:08 -20733.656577] Model parameter optimization (eps = 10.000000)
[02:45:12 -20684.975904] AUTODETECT spr round 1 (radius: 5)
[02:45:25 -14262.569791] AUTODETECT spr round 2 (radius: 10)
[02:45:40 -10896.844126] AUTODETECT spr round 3 (radius: 15)
[02:45:56 -9919.754685] AUTODETECT spr round 4 (radius: 20)
[02:46:13 -9198.954730] AUTODETECT spr round 5 (radius: 25)
[02:46:31 -8907.830156] SPR radius for FAST iterations: 25 (autodetect)
[02:46:31 -8907.830156] Model parameter optimization (eps = 3.000000)
[02:46:41 -8877.889174] FAST spr round 1 (radius: 25)
[02:46:55 -7730.787516] FAST spr round 2 (radius: 25)
[02:47:08 -7634.934923] FAST spr round 3 (radius: 25)
[02:47:21 -7613.643436] FAST spr round 4 (radius: 25)
[02:47:33 -7608.812774] FAST spr round 5 (radius: 25)
[02:47:45 -7608.812733] Model parameter optimization (eps = 1.000000)
[02:47:50 -7579.232672] SLOW spr round 1 (radius: 5)
[02:48:05 -7567.190710] SLOW spr round 2 (radius: 5)
[02:48:19 -7567.175879] SLOW spr round 3 (radius: 10)
[02:48:35 -7555.296140] SLOW spr round 4 (radius: 5)
[02:48:53 -7548.389724] SLOW spr round 5 (radius: 5)
[02:49:09 -7539.955939] SLOW spr round 6 (radius: 5)
[02:49:24 -7539.910251] SLOW spr round 7 (radius: 10)
[02:49:39 -7537.009111] SLOW spr round 8 (radius: 5)
[02:49:56 -7537.009023] SLOW spr round 9 (radius: 10)
[02:50:12 -7537.009017] SLOW spr round 10 (radius: 15)
[02:50:31 -7533.663599] SLOW spr round 11 (radius: 5)
[02:50:49 -7527.777645] SLOW spr round 12 (radius: 5)
[02:51:05 -7526.393024] SLOW spr round 13 (radius: 5)
[02:51:20 -7526.392010] SLOW spr round 14 (radius: 10)
[02:51:34 -7526.391939] SLOW spr round 15 (radius: 15)
[02:51:53 -7525.404876] SLOW spr round 16 (radius: 5)
[02:52:12 -7525.203515] SLOW spr round 17 (radius: 5)
[02:52:28 -7525.203508] SLOW spr round 18 (radius: 10)
[02:52:42 -7525.203508] SLOW spr round 19 (radius: 15)
[02:53:01 -7525.203508] SLOW spr round 20 (radius: 20)
[02:53:23 -7523.616593] SLOW spr round 21 (radius: 5)
[02:53:41 -7461.293175] SLOW spr round 22 (radius: 5)
[02:53:57 -7461.293171] SLOW spr round 23 (radius: 10)
[02:54:12 -7461.293170] SLOW spr round 24 (radius: 15)
[02:54:29 -7461.293170] SLOW spr round 25 (radius: 20)
[02:54:51 -7461.293170] SLOW spr round 26 (radius: 25)
[02:55:16 -7458.003432] SLOW spr round 27 (radius: 5)
[02:55:35 -7458.002125] SLOW spr round 28 (radius: 10)
[02:55:51 -7458.002040] SLOW spr round 29 (radius: 15)
[02:56:09 -7458.002033] SLOW spr round 30 (radius: 20)
[02:56:31 -7458.002033] SLOW spr round 31 (radius: 25)
[02:56:56 -7457.574057] SLOW spr round 32 (radius: 5)
[02:57:15 -7457.573858] SLOW spr round 33 (radius: 10)
[02:57:32 -7457.573816] SLOW spr round 34 (radius: 15)
[02:57:50 -7457.264406] SLOW spr round 35 (radius: 5)
[02:58:08 -7457.264403] SLOW spr round 36 (radius: 10)
[02:58:24 -7457.264402] SLOW spr round 37 (radius: 15)
[02:58:43 -7457.264402] SLOW spr round 38 (radius: 20)
[02:59:05 -7457.264402] SLOW spr round 39 (radius: 25)
[02:59:30 -7457.264402] Model parameter optimization (eps = 0.100000)

[02:59:34] ML tree search #18, logLikelihood: -7456.184700

[02:59:34 -25432.788137] Initial branch length optimization
[02:59:34 -20634.617926] Model parameter optimization (eps = 10.000000)
[02:59:39 -20598.738719] AUTODETECT spr round 1 (radius: 5)
[02:59:51 -14325.357120] AUTODETECT spr round 2 (radius: 10)
[03:00:06 -10752.041141] AUTODETECT spr round 3 (radius: 15)
[03:00:22 -9454.028666] AUTODETECT spr round 4 (radius: 20)
[03:00:40 -8884.105646] AUTODETECT spr round 5 (radius: 25)
[03:00:58 -8749.558082] SPR radius for FAST iterations: 25 (autodetect)
[03:00:58 -8749.558082] Model parameter optimization (eps = 3.000000)
[03:01:03 -8741.911977] FAST spr round 1 (radius: 25)
[03:01:17 -7791.822285] FAST spr round 2 (radius: 25)
[03:01:30 -7740.026921] FAST spr round 3 (radius: 25)
[03:01:42 -7734.287127] FAST spr round 4 (radius: 25)
[03:01:53 -7734.287105] Model parameter optimization (eps = 1.000000)
[03:01:56 -7733.798356] SLOW spr round 1 (radius: 5)
[03:02:11 -7733.139056] SLOW spr round 2 (radius: 5)
[03:02:25 -7732.984174] SLOW spr round 3 (radius: 5)
[03:02:38 -7732.983991] SLOW spr round 4 (radius: 10)
[03:02:53 -7732.983985] SLOW spr round 5 (radius: 15)
[03:03:11 -7727.631419] SLOW spr round 6 (radius: 5)
[03:03:30 -7727.630467] SLOW spr round 7 (radius: 10)
[03:03:46 -7727.630301] SLOW spr round 8 (radius: 15)
[03:04:03 -7727.630271] SLOW spr round 9 (radius: 20)
[03:04:23 -7727.630266] SLOW spr round 10 (radius: 25)
[03:04:45 -7704.256115] SLOW spr round 11 (radius: 5)
[03:05:04 -7704.194914] SLOW spr round 12 (radius: 10)
[03:05:21 -7704.194558] SLOW spr round 13 (radius: 15)
[03:05:38 -7704.194498] SLOW spr round 14 (radius: 20)
[03:05:58 -7704.194486] SLOW spr round 15 (radius: 25)
[03:06:19 -7702.860785] SLOW spr round 16 (radius: 5)
[03:06:38 -7702.859079] SLOW spr round 17 (radius: 10)
[03:06:55 -7702.859078] SLOW spr round 18 (radius: 15)
[03:07:12 -7702.859078] SLOW spr round 19 (radius: 20)
[03:07:32 -7702.859078] SLOW spr round 20 (radius: 25)
[03:07:54 -7702.859078] Model parameter optimization (eps = 0.100000)

[03:07:56] ML tree search #19, logLikelihood: -7702.677156

[03:07:56 -25405.690852] Initial branch length optimization
[03:07:57 -20834.987198] Model parameter optimization (eps = 10.000000)
[03:08:01 -20774.269891] AUTODETECT spr round 1 (radius: 5)
[03:08:14 -14175.668001] AUTODETECT spr round 2 (radius: 10)
[03:08:28 -10682.446301] AUTODETECT spr round 3 (radius: 15)
[03:08:45 -9367.473324] AUTODETECT spr round 4 (radius: 20)
[03:09:02 -9040.781604] AUTODETECT spr round 5 (radius: 25)
[03:09:20 -8800.755166] SPR radius for FAST iterations: 25 (autodetect)
[03:09:20 -8800.755166] Model parameter optimization (eps = 3.000000)
[03:09:25 -8782.991139] FAST spr round 1 (radius: 25)
[03:09:40 -7741.542067] FAST spr round 2 (radius: 25)
[03:09:53 -7654.132774] FAST spr round 3 (radius: 25)
[03:10:06 -7650.978560] FAST spr round 4 (radius: 25)
[03:10:17 -7648.882794] FAST spr round 5 (radius: 25)
[03:10:29 -7647.379890] FAST spr round 6 (radius: 25)
[03:10:41 -7647.377826] Model parameter optimization (eps = 1.000000)
[03:10:44 -7645.710571] SLOW spr round 1 (radius: 5)
[03:10:59 -7644.320805] SLOW spr round 2 (radius: 5)
[03:11:13 -7643.761399] SLOW spr round 3 (radius: 5)
[03:11:28 -7641.615567] SLOW spr round 4 (radius: 5)
[03:11:42 -7641.615520] SLOW spr round 5 (radius: 10)
[03:11:56 -7641.078295] SLOW spr round 6 (radius: 5)
[03:12:14 -7640.865020] SLOW spr round 7 (radius: 5)
[03:12:30 -7640.864985] SLOW spr round 8 (radius: 10)
[03:12:44 -7640.864973] SLOW spr round 9 (radius: 15)
[03:13:04 -7520.628484] SLOW spr round 10 (radius: 5)
[03:13:23 -7463.181565] SLOW spr round 11 (radius: 5)
[03:13:40 -7462.675765] SLOW spr round 12 (radius: 5)
[03:13:55 -7462.674858] SLOW spr round 13 (radius: 10)
[03:14:09 -7462.674729] SLOW spr round 14 (radius: 15)
[03:14:28 -7462.674701] SLOW spr round 15 (radius: 20)
[03:14:52 -7462.674696] SLOW spr round 16 (radius: 25)
[03:15:21 -7462.603413] Model parameter optimization (eps = 0.100000)

[03:15:23] ML tree search #20, logLikelihood: -7462.490644


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.297287,0.431682) (0.379163,0.767537) (0.215814,1.425285) (0.107736,2.534414) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -7413.694368

AIC score: 16665.388736 / AICc score: 1707625.388736 / BIC score: 18145.822298
Free parameters (model + branch lengths): 919

WARNING: Number of free parameters (K=919) is larger than alignment size (n=37).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14674/3_mltree/Q14674.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14674/3_mltree/Q14674.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14674/3_mltree/Q14674.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q14674/3_mltree/Q14674.raxml.log

Analysis started: 14-Jul-2021 07:36:07 / finished: 14-Jul-2021 10:51:31

Elapsed time: 11724.061 seconds

Consumed energy: 943.163 Wh (= 5 km in an electric car, or 24 km with an e-scooter!)