RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 18:22:13 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q14003/2_msa/Q14003_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q14003/3_mltree/Q14003.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q14003/4_raxmlng_ancestral/Q14003 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622647333 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q14003/2_msa/Q14003_nogap_msa.fasta [00:00:00] Loaded alignment with 1000 taxa and 757 sites WARNING: Sequences tr_E1BWF1_E1BWF1_CHICK_9031 and tr_G1NRE2_G1NRE2_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1BYX3_E1BYX3_CHICK_9031 and tr_G1N040_G1N040_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1BYX5_E1BYX5_CHICK_9031 and tr_A0A091UJY9_A0A091UJY9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_E1BYX5_E1BYX5_CHICK_9031 and tr_A0A087RK65_A0A087RK65_APTFO_9233 are exactly identical! WARNING: Sequences tr_E1BYX5_E1BYX5_CHICK_9031 and tr_A0A091FQI1_A0A091FQI1_9AVES_55661 are exactly identical! WARNING: Sequences sp_Q9Z0V2_KCND2_MOUSE_10090 and sp_Q63881_KCND2_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9Z0V2_KCND2_MOUSE_10090 and tr_A0A2Y9E456_A0A2Y9E456_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YQ54_M3YQ54_MUSPF_9669 and sp_P25122_KCNC1_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YQ54_M3YQ54_MUSPF_9669 and tr_F7D1X2_F7D1X2_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YQ54_M3YQ54_MUSPF_9669 and tr_L5L5X1_L5L5X1_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YQ54_M3YQ54_MUSPF_9669 and tr_A0A2U3WT23_A0A2U3WT23_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z1J4_M3Z1J4_MUSPF_9669 and tr_A0A2Y9IPZ4_A0A2Y9IPZ4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3GR32_A0A2I3GR32_NOMLE_61853 and tr_K7BBB6_K7BBB6_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GR32_A0A2I3GR32_NOMLE_61853 and sp_Q9NZV8_KCND2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GR32_A0A2I3GR32_NOMLE_61853 and tr_A0A2R9B1Q7_A0A2R9B1Q7_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3HKC4_A0A2I3HKC4_NOMLE_61853 and tr_G3S3N7_G3S3N7_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HKC4_A0A2I3HKC4_NOMLE_61853 and tr_A0A2I3SQI9_A0A2I3SQI9_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HKC4_A0A2I3HKC4_NOMLE_61853 and sp_Q96PR1_KCNC2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HKC4_A0A2I3HKC4_NOMLE_61853 and tr_F7HVE2_F7HVE2_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3HKC4_A0A2I3HKC4_NOMLE_61853 and tr_A0A2I3LJN5_A0A2I3LJN5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3HKC4_A0A2I3HKC4_NOMLE_61853 and tr_A0A0D9QVN3_A0A0D9QVN3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3HKC4_A0A2I3HKC4_NOMLE_61853 and tr_A0A2K5MAP0_A0A2K5MAP0_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3HKC4_A0A2I3HKC4_NOMLE_61853 and tr_A0A2K6CMV8_A0A2K6CMV8_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3HKC4_A0A2I3HKC4_NOMLE_61853 and tr_A0A2K5XC15_A0A2K5XC15_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QKQ9_G1QKQ9_NOMLE_61853 and tr_G3QL66_G3QL66_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QKQ9_G1QKQ9_NOMLE_61853 and tr_H2QWA6_H2QWA6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QKQ9_G1QKQ9_NOMLE_61853 and sp_Q92953_KCNB2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QKQ9_G1QKQ9_NOMLE_61853 and tr_A0A2R9C703_A0A2R9C703_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1R5M2_G1R5M2_NOMLE_61853 and tr_G3QVG8_G3QVG8_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1R5M2_G1R5M2_NOMLE_61853 and tr_A0A2J8SF99_A0A2J8SF99_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1R5M2_G1R5M2_NOMLE_61853 and tr_A0A2J8MJF2_A0A2J8MJF2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R5M2_G1R5M2_NOMLE_61853 and sp_Q14721_KCNB1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R5M2_G1R5M2_NOMLE_61853 and tr_A0A1D5Q0L6_A0A1D5Q0L6_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1R5M2_G1R5M2_NOMLE_61853 and tr_U3FAP5_U3FAP5_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1R5M2_G1R5M2_NOMLE_61853 and tr_A0A096NNR7_A0A096NNR7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R5M2_G1R5M2_NOMLE_61853 and tr_A0A2R9ADU2_A0A2R9ADU2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1S7P7_G1S7P7_NOMLE_61853 and tr_H2NDZ7_H2NDZ7_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1S7P7_G1S7P7_NOMLE_61853 and tr_H2Q386_H2Q386_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1S7P7_G1S7P7_NOMLE_61853 and tr_H0X4A3_H0X4A3_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1SIB5_G1SIB5_RABIT_9986 and sp_Q95L11_KCNB2_RABIT_9986 are exactly identical! WARNING: Sequences tr_G1TJT3_G1TJT3_RABIT_9986 and sp_Q9MZ19_KCNB1_RABIT_9986 are exactly identical! WARNING: Sequences tr_E2QY00_E2QY00_CANLF_9615 and tr_M3WBK9_M3WBK9_FELCA_9685 are exactly identical! WARNING: Sequences tr_H2QYK7_H2QYK7_PANTR_9598 and sp_Q9NSA2_KCND1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QYK7_H2QYK7_PANTR_9598 and tr_A0A2R9B401_A0A2R9B401_PANPA_9597 are exactly identical! WARNING: Sequences tr_W5NUC4_W5NUC4_SHEEP_9940 and tr_A0A287BDS8_A0A287BDS8_PIG_9823 are exactly identical! WARNING: Sequences tr_W5NUC4_W5NUC4_SHEEP_9940 and tr_F1N553_F1N553_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5NUC4_W5NUC4_SHEEP_9940 and tr_A0A2Y9LRS8_A0A2Y9LRS8_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5NUC4_W5NUC4_SHEEP_9940 and tr_A0A2Y9F196_A0A2Y9F196_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5NUC4_W5NUC4_SHEEP_9940 and tr_A0A383ZII4_A0A383ZII4_BALAS_310752 are exactly identical! WARNING: Sequences tr_W5PSR3_W5PSR3_SHEEP_9940 and tr_E1BDC5_E1BDC5_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A158P1R1_A0A158P1R1_ATTCE_12957 and tr_A0A195BST5_A0A195BST5_9HYME_520822 are exactly identical! WARNING: Sequences tr_H0VJ24_H0VJ24_CAVPO_10141 and tr_A0A2Y9JPW1_A0A2Y9JPW1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F6Q7Z0_F6Q7Z0_MACMU_9544 and tr_A0A2K6DI77_A0A2K6DI77_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6S4U3_F6S4U3_MACMU_9544 and tr_G7Q2P3_G7Q2P3_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6S4U3_F6S4U3_MACMU_9544 and tr_A0A096NPF3_A0A096NPF3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6S4U3_F6S4U3_MACMU_9544 and tr_A0A0D9RL17_A0A0D9RL17_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6S4U3_F6S4U3_MACMU_9544 and tr_A0A2K6E6Q8_A0A2K6E6Q8_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6S4U3_F6S4U3_MACMU_9544 and tr_A0A2K6AIJ7_A0A2K6AIJ7_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7FAN1_F7FAN1_MACMU_9544 and tr_A0A2I3MMS9_A0A2I3MMS9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7FAN1_F7FAN1_MACMU_9544 and tr_A0A1S3FG01_A0A1S3FG01_DIPOR_10020 are exactly identical! WARNING: Sequences tr_F7FAN1_F7FAN1_MACMU_9544 and tr_A0A2K5M744_A0A2K5M744_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7FAN1_F7FAN1_MACMU_9544 and tr_A0A2K6AME3_A0A2K6AME3_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7FAN1_F7FAN1_MACMU_9544 and tr_A0A2K5YH77_A0A2K5YH77_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7GWN3_F7GWN3_MACMU_9544 and tr_A0A096NU98_A0A096NU98_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7GWN3_F7GWN3_MACMU_9544 and tr_A0A2K6BCN4_A0A2K6BCN4_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GWN3_F7GWN3_MACMU_9544 and tr_A0A2K5YUJ7_A0A2K5YUJ7_MANLE_9568 are exactly identical! WARNING: Sequences tr_H0ZES6_H0ZES6_TAEGU_59729 and tr_A0A091EDZ2_A0A091EDZ2_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZES6_H0ZES6_TAEGU_59729 and tr_A0A093PYX1_A0A093PYX1_9PASS_328815 are exactly identical! WARNING: Sequences tr_F1SBE6_F1SBE6_PIG_9823 and sp_O18868_KCNB1_PIG_9823 are exactly identical! WARNING: Sequences tr_G3X8A0_G3X8A0_BOVIN_9913 and sp_Q4ZHA6_KCNB2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_U3J7Y4_U3J7Y4_ANAPL_8839 and tr_A0A0Q3PNF8_A0A0Q3PNF8_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A096MKX7_A0A096MKX7_PAPAN_9555 and tr_A0A2K5KVE4_A0A2K5KVE4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096MKX7_A0A096MKX7_PAPAN_9555 and tr_A0A2K5ZDL1_A0A2K5ZDL1_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A151N8J1_A0A151N8J1_ALLMI_8496 and tr_A0A3Q0FPG1_A0A3Q0FPG1_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A087R1D7_A0A087R1D7_APTFO_9233 and tr_A0A091G8W4_A0A091G8W4_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A2I0MHZ6_A0A2I0MHZ6_COLLI_8932 and tr_A0A1V4JNS7_A0A1V4JNS7_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0RKT1_A0A0V0RKT1_9BILA_6336 and tr_A0A0V1CVM1_A0A0V1CVM1_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0RKT1_A0A0V0RKT1_9BILA_6336 and tr_A0A0V0WWW3_A0A0V0WWW3_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0RKT1_A0A0V0RKT1_9BILA_6336 and tr_A0A0V0VAD5_A0A0V0VAD5_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0RKT1_A0A0V0RKT1_9BILA_6336 and tr_A0A0V1LHY6_A0A0V1LHY6_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0RKT1_A0A0V0RKT1_9BILA_6336 and tr_A0A0V0ZSM0_A0A0V0ZSM0_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0RKT1_A0A0V0RKT1_9BILA_6336 and tr_A0A0V0XSZ4_A0A0V0XSZ4_TRIPS_6337 are exactly identical! WARNING: Sequences tr_A0A0V0RKT1_A0A0V0RKT1_9BILA_6336 and tr_A0A0V1MB61_A0A0V1MB61_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V0RKT1_A0A0V0RKT1_9BILA_6336 and tr_A0A0V1PBE2_A0A0V1PBE2_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0RKT1_A0A0V0RKT1_9BILA_6336 and tr_A0A0V1HA89_A0A0V1HA89_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V0RKT1_A0A0V0RKT1_9BILA_6336 and tr_A0A0V0TM42_A0A0V0TM42_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0S043_A0A0V0S043_9BILA_6336 and tr_A0A0V1LNM2_A0A0V1LNM2_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1CYR3_A0A0V1CYR3_TRIBR_45882 and tr_A0A0V0VPW1_A0A0V0VPW1_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CYR3_A0A0V1CYR3_TRIBR_45882 and tr_A0A0V0U9A3_A0A0V0U9A3_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1D0E8_A0A0V1D0E8_TRIBR_45882 and tr_A0A0V0VRT5_A0A0V0VRT5_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1D0E8_A0A0V1D0E8_TRIBR_45882 and tr_A0A0V1NWA0_A0A0V1NWA0_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1D0E8_A0A0V1D0E8_TRIBR_45882 and tr_A0A0V0TNT7_A0A0V0TNT7_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1DHR6_A0A0V1DHR6_TRIBR_45882 and tr_A0A0V0VTA0_A0A0V0VTA0_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1KXJ3_A0A0V1KXJ3_9BILA_6335 and tr_A0A0V1NLU2_A0A0V1NLU2_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1KXJ3_A0A0V1KXJ3_9BILA_6335 and tr_A0A0V0U3E6_A0A0V0U3E6_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0ZY78_A0A0V0ZY78_9BILA_990121 and tr_A0A0V1NZG4_A0A0V1NZG4_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1N354_A0A0V1N354_9BILA_268474 and tr_A0A0V1H589_A0A0V1H589_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A2D0Q5Q1_A0A2D0Q5Q1_ICTPU_7998 and tr_A0A2D0Q6Y1_A0A2D0Q6Y1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0Q5U5_A0A2D0Q5U5_ICTPU_7998 and tr_A0A2D0Q9P0_A0A2D0Q9P0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0Q6W0_A0A2D0Q6W0_ICTPU_7998 and tr_A0A2D0Q8J1_A0A2D0Q8J1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2K5M9R6_A0A2K5M9R6_CERAT_9531 and tr_A0A2K6E5R7_A0A2K6E5R7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2K5M9R6_A0A2K5M9R6_CERAT_9531 and tr_A0A2K5YNV4_A0A2K5YNV4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4C2J2_A0A2U4C2J2_TURTR_9739 and tr_A0A2Y9Q6K4_A0A2Y9Q6K4_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3ZCC0_A0A2U3ZCC0_ODORO_9708 and tr_A0A2U3Y403_A0A2U3Y403_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2U3ZCC0_A0A2U3ZCC0_ODORO_9708 and tr_A0A2Y9JRM0_A0A2Y9JRM0_ENHLU_391180 are exactly identical! WARNING: Duplicate sequences found: 105 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q14003/4_raxmlng_ancestral/Q14003.raxml.reduced.phy Alignment comprises 1 partitions and 757 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 757 Gaps: 36.25 % Invariant sites: 0.40 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q14003/4_raxmlng_ancestral/Q14003.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q14003/3_mltree/Q14003.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 190 / 15200 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -239267.065323 [00:00:00 -239267.065323] Initial branch length optimization [00:00:02 -175721.571667] Model parameter optimization (eps = 0.100000) [00:00:57] Tree #1, final logLikelihood: -175230.102291 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.158750,0.180100) (0.168846,0.279547) (0.284861,0.641126) (0.387544,1.913531) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q14003/4_raxmlng_ancestral/Q14003.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q14003/4_raxmlng_ancestral/Q14003.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q14003/4_raxmlng_ancestral/Q14003.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q14003/4_raxmlng_ancestral/Q14003.raxml.log Analysis started: 02-Jun-2021 18:22:13 / finished: 02-Jun-2021 18:23:18 Elapsed time: 64.910 seconds Consumed energy: 4.448 Wh