RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 03-Jun-2021 14:59:55 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13642/2_msa/Q13642_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13642/3_mltree/Q13642.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13642/4_raxmlng_ancestral/Q13642 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622721595 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13642/2_msa/Q13642_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 323 sites WARNING: Sequences tr_B4QNC5_B4QNC5_DROSI_7240 and tr_B4HK86_B4HK86_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QNC5_B4QNC5_DROSI_7240 and tr_A0A1W4VV44_A0A1W4VV44_DROFC_30025 are exactly identical! WARNING: Sequences tr_E9FSI1_E9FSI1_DAPPU_6669 and tr_A0A164LQG6_A0A164LQG6_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E2B1B3_E2B1B3_CAMFO_104421 and tr_F4WW73_F4WW73_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A1D5P5R5_A0A1D5P5R5_CHICK_9031 and tr_G1MV58_G1MV58_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1N8U0_F1N8U0_CHICK_9031 and tr_G1NA52_G1NA52_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1N8U0_F1N8U0_CHICK_9031 and tr_H0ZGQ2_H0ZGQ2_TAEGU_59729 are exactly identical! WARNING: Sequences tr_F1N8U0_F1N8U0_CHICK_9031 and tr_U3KFN9_U3KFN9_FICAL_59894 are exactly identical! WARNING: Sequences tr_F1N8U0_F1N8U0_CHICK_9031 and tr_A0A2I0M9S8_A0A2I0M9S8_COLLI_8932 are exactly identical! WARNING: Sequences tr_F1N8U0_F1N8U0_CHICK_9031 and tr_A0A1V4K953_A0A1V4K953_PATFA_372326 are exactly identical! WARNING: Sequences tr_F1N8U0_F1N8U0_CHICK_9031 and tr_A0A218UI98_A0A218UI98_9PASE_299123 are exactly identical! WARNING: Sequences tr_F1N8U0_F1N8U0_CHICK_9031 and tr_A0A226NLA5_A0A226NLA5_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1N8U0_F1N8U0_CHICK_9031 and tr_A0A226PGB8_A0A226PGB8_COLVI_9014 are exactly identical! WARNING: Sequences tr_F1P4R3_F1P4R3_CHICK_9031 and tr_G1NPP0_G1NPP0_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1P4R3_F1P4R3_CHICK_9031 and tr_A0A087QW05_A0A087QW05_APTFO_9233 are exactly identical! WARNING: Sequences tr_F1P4R3_F1P4R3_CHICK_9031 and tr_A0A226PMI5_A0A226PMI5_COLVI_9014 are exactly identical! WARNING: Sequences sp_P49024_PAXI_CHICK_9031 and tr_G1N9N2_G1N9N2_MELGA_9103 are exactly identical! WARNING: Sequences tr_M3XVG5_M3XVG5_MUSPF_9669 and tr_G1SPL0_G1SPL0_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3XVG5_M3XVG5_MUSPF_9669 and tr_F1PUT6_F1PUT6_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XVG5_M3XVG5_MUSPF_9669 and tr_F7D2Z3_F7D2Z3_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3XVG5_M3XVG5_MUSPF_9669 and tr_H0XSE6_H0XSE6_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3XVG5_M3XVG5_MUSPF_9669 and sp_P49023_PAXI_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3XVG5_M3XVG5_MUSPF_9669 and tr_F7HRI5_F7HRI5_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3XVG5_M3XVG5_MUSPF_9669 and tr_G1LEY9_G1LEY9_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XVG5_M3XVG5_MUSPF_9669 and tr_A0A0D9S4H8_A0A0D9S4H8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3XVG5_M3XVG5_MUSPF_9669 and tr_A0A2Y9KJ18_A0A2Y9KJ18_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XVG5_M3XVG5_MUSPF_9669 and tr_A0A2Y9FT25_A0A2Y9FT25_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XVG5_M3XVG5_MUSPF_9669 and tr_A0A383Z8D4_A0A383Z8D4_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2I3GDF2_A0A2I3GDF2_NOMLE_61853 and tr_A0A2I2YQ68_A0A2I2YQ68_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GDF2_A0A2I3GDF2_NOMLE_61853 and tr_H2PWW9_H2PWW9_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3GDF2_A0A2I3GDF2_NOMLE_61853 and tr_A0A2I3T9X6_A0A2I3T9X6_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GDF2_A0A2I3GDF2_NOMLE_61853 and sp_Q13642_FHL1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GDF2_A0A2I3GDF2_NOMLE_61853 and tr_A0A1D5QTS1_A0A1D5QTS1_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3GDF2_A0A2I3GDF2_NOMLE_61853 and tr_A0A2I3M6J6_A0A2I3M6J6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3GDF2_A0A2I3GDF2_NOMLE_61853 and tr_A0A0D9R5D7_A0A0D9R5D7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3GDF2_A0A2I3GDF2_NOMLE_61853 and tr_A0A2K6DEJ0_A0A2K6DEJ0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3GDF2_A0A2I3GDF2_NOMLE_61853 and tr_A0A2K5XE58_A0A2K5XE58_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3GDF2_A0A2I3GDF2_NOMLE_61853 and tr_A0A2R9B1L7_A0A2R9B1L7_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3HB74_A0A2I3HB74_NOMLE_61853 and tr_A0A2I2ZXD5_A0A2I2ZXD5_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3HB74_A0A2I3HB74_NOMLE_61853 and sp_Q14192_FHL2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3HWJ0_A0A2I3HWJ0_NOMLE_61853 and tr_A0A2I3SDP5_A0A2I3SDP5_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HWJ0_A0A2I3HWJ0_NOMLE_61853 and tr_A0A2I2UVY9_A0A2I2UVY9_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A2I3HWJ0_A0A2I3HWJ0_NOMLE_61853 and tr_A0A2I3MUG8_A0A2I3MUG8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3HWJ0_A0A2I3HWJ0_NOMLE_61853 and tr_A0A2K5P571_A0A2K5P571_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3HWJ0_A0A2I3HWJ0_NOMLE_61853 and tr_A0A2K5XEU5_A0A2K5XEU5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3HWJ0_A0A2I3HWJ0_NOMLE_61853 and tr_A0A2R9AWM5_A0A2R9AWM5_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RM43_G1RM43_NOMLE_61853 and tr_G3QK59_G3QK59_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RM43_G1RM43_NOMLE_61853 and tr_H2N7X1_H2N7X1_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RM43_G1RM43_NOMLE_61853 and tr_H2PYQ1_H2PYQ1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RM43_G1RM43_NOMLE_61853 and tr_A0A1D5QLX7_A0A1D5QLX7_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RM43_G1RM43_NOMLE_61853 and tr_F6YQN7_F6YQN7_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1RM43_G1RM43_NOMLE_61853 and tr_G7NUB3_G7NUB3_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RM43_G1RM43_NOMLE_61853 and tr_A0A2I3LU28_A0A2I3LU28_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RM43_G1RM43_NOMLE_61853 and tr_A0A0D9S7Q3_A0A0D9S7Q3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RM43_G1RM43_NOMLE_61853 and tr_A0A2K5MFS1_A0A2K5MFS1_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RM43_G1RM43_NOMLE_61853 and tr_A0A2K6AER6_A0A2K6AER6_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RM43_G1RM43_NOMLE_61853 and tr_A0A2R9BKD9_A0A2R9BKD9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QNM5_G3QNM5_GORGO_9595 and sp_Q5TD97_FHL5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3S5V2_G3S5V2_GORGO_9595 and tr_A0A2J8KIR0_A0A2J8KIR0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3S5V2_G3S5V2_GORGO_9595 and tr_A0A2R9BS94_A0A2R9BS94_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q292U2_PRIC1_DROPS_46245 and tr_B4MPY6_B4MPY6_DROWI_7260 are exactly identical! WARNING: Sequences sp_Q292U2_PRIC1_DROPS_46245 and tr_B4GCM4_B4GCM4_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q29NT6_Q29NT6_DROPS_46245 and tr_B4GJK1_B4GJK1_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A2I3TBP6_A0A2I3TBP6_PANTR_9598 and tr_A0A2R9B8V2_A0A2R9B8V2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G2HIJ7_G2HIJ7_PANTR_9598 and tr_A0A2R9BEN0_A0A2R9BEN0_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A3B5Q557_A0A3B5Q557_XIPMA_8083 and tr_A0A087X8V6_A0A087X8V6_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A158NLE4_A0A158NLE4_ATTCE_12957 and tr_A0A195F2H9_A0A195F2H9_9HYME_34720 are exactly identical! WARNING: Sequences tr_I3MR55_I3MR55_ICTTR_43179 and tr_H0UVX9_H0UVX9_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A0I9R3A0_A0A0I9R3A0_BRUMA_6279 and tr_A0A0N4TUG0_A0A0N4TUG0_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A1D5REX0_A0A1D5REX0_MACMU_9544 and tr_A0A096P4D5_A0A096P4D5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5REX0_A0A1D5REX0_MACMU_9544 and tr_A0A2K6B3F3_A0A2K6B3F3_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5REX0_A0A1D5REX0_MACMU_9544 and tr_A0A2K5ZQ65_A0A2K5ZQ65_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6U4Q6_F6U4Q6_MACMU_9544 and tr_G7PMV9_G7PMV9_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6U4Q6_F6U4Q6_MACMU_9544 and tr_A0A096MVB3_A0A096MVB3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6U4Q6_F6U4Q6_MACMU_9544 and tr_A0A0D9RWX3_A0A0D9RWX3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6U4Q6_F6U4Q6_MACMU_9544 and tr_A0A2K5MA40_A0A2K5MA40_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6U4Q6_F6U4Q6_MACMU_9544 and tr_A0A2K6B874_A0A2K6B874_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6U4Q6_F6U4Q6_MACMU_9544 and tr_A0A2K5YQW1_A0A2K5YQW1_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7F0V6_F7F0V6_MACMU_9544 and tr_G7P427_G7P427_MACFA_9541 are exactly identical! WARNING: Sequences tr_E5SIJ8_E5SIJ8_TRISP_6334 and tr_A0A0V0RR11_A0A0V0RR11_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5SIJ8_E5SIJ8_TRISP_6334 and tr_A0A0V1DB32_A0A0V1DB32_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SIJ8_E5SIJ8_TRISP_6334 and tr_A0A0V0WWT7_A0A0V0WWT7_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5SIJ8_E5SIJ8_TRISP_6334 and tr_A0A0V0VQS6_A0A0V0VQS6_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5SIJ8_E5SIJ8_TRISP_6334 and tr_A0A0V1LGZ3_A0A0V1LGZ3_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5SIJ8_E5SIJ8_TRISP_6334 and tr_A0A0V1PC05_A0A0V1PC05_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SIJ8_E5SIJ8_TRISP_6334 and tr_A0A0V0TYW3_A0A0V0TYW3_9BILA_144512 are exactly identical! WARNING: Sequences tr_H0YT97_H0YT97_TAEGU_59729 and tr_A0A218UZ89_A0A218UZ89_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0YXC1_H0YXC1_TAEGU_59729 and tr_A0A218V476_A0A218V476_9PASE_299123 are exactly identical! WARNING: Sequences tr_F4WW72_F4WW72_ACREC_103372 and tr_A0A195B297_A0A195B297_9HYME_520822 are exactly identical! WARNING: Sequences tr_G0MM05_G0MM05_CAEBE_135651 and tr_G0P7J2_G0P7J2_CAEBE_135651 are exactly identical! WARNING: Sequences tr_G0MM05_G0MM05_CAEBE_135651 and tr_A0A261A3F0_A0A261A3F0_9PELO_1503980 are exactly identical! WARNING: Sequences tr_G0MM05_G0MM05_CAEBE_135651 and tr_A0A2G5VQF5_A0A2G5VQF5_9PELO_1611254 are exactly identical! WARNING: Sequences tr_B4MFG1_B4MFG1_DROVI_7244 and tr_A0A0Q9X9R9_A0A0Q9X9R9_DROMO_7230 are exactly identical! WARNING: Sequences tr_A0A087YCG7_A0A087YCG7_POEFO_48698 and tr_A0A087YCK0_A0A087YCK0_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A0D9RBE6_A0A0D9RBE6_CHLSB_60711 and tr_A0A2K5P050_A0A2K5P050_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0K0G2Y3_A0A0K0G2Y3_STRVS_75913 and tr_A0A0N5CGQ0_A0A0N5CGQ0_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0Q3U3A7_A0A0Q3U3A7_AMAAE_12930 and tr_A0A091VJL4_A0A091VJL4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A0Q3U3A7_A0A0Q3U3A7_AMAAE_12930 and tr_A0A087RCL5_A0A087RCL5_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A0Q3U3A7_A0A0Q3U3A7_AMAAE_12930 and tr_A0A091GXL2_A0A091GXL2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A0Q3U3A7_A0A0Q3U3A7_AMAAE_12930 and tr_A0A0A0A4Q6_A0A0A0A4Q6_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091F7D8_A0A091F7D8_CORBR_85066 and tr_A0A093Q7U8_A0A093Q7U8_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091JHF5_A0A091JHF5_EGRGA_188379 and tr_A0A087RI01_A0A087RI01_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JHF5_A0A091JHF5_EGRGA_188379 and tr_A0A093H4A1_A0A093H4A1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A2I0LRQ3_A0A2I0LRQ3_COLLI_8932 and tr_A0A1V4JHY8_A0A1V4JHY8_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0Y6J7_A0A0V0Y6J7_TRIPS_6337 and tr_A0A0V1N4G9_A0A0V1N4G9_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V0Y6J7_A0A0V0Y6J7_TRIPS_6337 and tr_A0A0V1H840_A0A0V1H840_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V1PIP7_A0A0V1PIP7_9BILA_92180 and tr_A0A0V0TKF4_A0A0V0TKF4_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A1S3KTQ0_A0A1S3KTQ0_SALSA_8030 and tr_B5XBR0_B5XBR0_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3NEU8_A0A1S3NEU8_SALSA_8030 and tr_B5X1R4_B5X1R4_SALSA_8030 are exactly identical! WARNING: Sequences tr_C0HBE0_C0HBE0_SALSA_8030 and tr_A0A060VWZ4_A0A060VWZ4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226NAJ8_A0A226NAJ8_CALSU_9009 and tr_A0A226NW09_A0A226NW09_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NFT1_A0A226NFT1_CALSU_9009 and tr_A0A226PDT1_A0A226PDT1_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0PIE0_A0A2D0PIE0_ICTPU_7998 and tr_A0A2D0PJU7_A0A2D0PJU7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QP76_A0A2D0QP76_ICTPU_7998 and tr_A0A2D0QPE9_A0A2D0QPE9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QP76_A0A2D0QP76_ICTPU_7998 and tr_A0A2D0QPN8_A0A2D0QPN8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QP76_A0A2D0QP76_ICTPU_7998 and tr_A0A2D0QRD5_A0A2D0QRD5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SPZ2_A0A2D0SPZ2_ICTPU_7998 and tr_A0A2D0SQJ1_A0A2D0SQJ1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4AK56_A0A2U4AK56_TURTR_9739 and tr_A0A2Y9MGJ7_A0A2Y9MGJ7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3VNQ0_A0A2U3VNQ0_ODORO_9708 and tr_A0A2U3YNS4_A0A2U3YNS4_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9NHW5_A0A2Y9NHW5_DELLE_9749 and tr_A0A384A5H6_A0A384A5H6_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 120 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13642/4_raxmlng_ancestral/Q13642.raxml.reduced.phy Alignment comprises 1 partitions and 323 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 323 Gaps: 22.68 % Invariant sites: 0.31 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13642/4_raxmlng_ancestral/Q13642.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13642/3_mltree/Q13642.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 81 / 6480 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -94060.092872 [00:00:00 -94060.092872] Initial branch length optimization [00:00:00 -93439.273837] Model parameter optimization (eps = 0.100000) [00:00:34] Tree #1, final logLikelihood: -93171.264008 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.146530,0.191688) (0.097927,0.367192) (0.428980,0.940692) (0.326563,1.630362) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13642/4_raxmlng_ancestral/Q13642.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13642/4_raxmlng_ancestral/Q13642.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13642/4_raxmlng_ancestral/Q13642.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13642/4_raxmlng_ancestral/Q13642.raxml.log Analysis started: 03-Jun-2021 14:59:55 / finished: 03-Jun-2021 15:00:33 Elapsed time: 38.112 seconds Consumed energy: 3.306 Wh