RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 18:00:02 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13546/2_msa/Q13546_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13546/3_mltree/Q13546.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13546/4_raxmlng_ancestral/Q13546 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622646002 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13546/2_msa/Q13546_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 671 sites WARNING: Sequences tr_F1NP54_F1NP54_CHICK_9031 and sp_P42683_LCK_CHICK_9031 are exactly identical! WARNING: Sequences tr_Q5ZMB9_Q5ZMB9_CHICK_9031 and tr_A0A226NGR7_A0A226NGR7_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q5ZMB9_Q5ZMB9_CHICK_9031 and tr_A0A226NY66_A0A226NY66_COLVI_9014 are exactly identical! WARNING: Sequences tr_G1QKJ0_G1QKJ0_NOMLE_61853 and tr_G3R9U2_G3R9U2_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QKJ0_G1QKJ0_NOMLE_61853 and tr_H2PQC0_H2PQC0_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QKJ0_G1QKJ0_NOMLE_61853 and tr_H2R453_H2R453_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QKJ0_G1QKJ0_NOMLE_61853 and sp_P07948_LYN_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QKJ0_G1QKJ0_NOMLE_61853 and tr_F7BV42_F7BV42_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QKJ0_G1QKJ0_NOMLE_61853 and tr_G7PBV3_G7PBV3_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QKJ0_G1QKJ0_NOMLE_61853 and tr_A0A096MX07_A0A096MX07_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QKJ0_G1QKJ0_NOMLE_61853 and tr_A0A0D9RQ35_A0A0D9RQ35_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QKJ0_G1QKJ0_NOMLE_61853 and tr_A0A2K6DNJ8_A0A2K6DNJ8_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QKJ0_G1QKJ0_NOMLE_61853 and tr_A0A2R9AHH9_A0A2R9AHH9_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A072UNV0_A0A072UNV0_MEDTR_3880 and tr_A0A072UPS7_A0A072UPS7_MEDTR_3880 are exactly identical! WARNING: Sequences tr_A0A2I3TDL6_A0A2I3TDL6_PANTR_9598 and tr_A0A2R8ZRW6_A0A2R8ZRW6_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A0E0G240_A0A0E0G240_ORYNI_4536 and tr_A2X1G7_A2X1G7_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0G240_A0A0E0G240_ORYNI_4536 and tr_I1NXQ9_I1NXQ9_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0G240_A0A0E0G240_ORYNI_4536 and tr_A0A0E0NAK3_A0A0E0NAK3_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0G240_A0A0E0G240_ORYNI_4536 and tr_A0A0D3F1D9_A0A0D3F1D9_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0G240_A0A0E0G240_ORYNI_4536 and tr_A0A0D9YN18_A0A0D9YN18_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0G240_A0A0E0G240_ORYNI_4536 and tr_Q8GV28_Q8GV28_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_A0A0E0HCK0_A0A0E0HCK0_ORYNI_4536 and tr_A0A0E0PKQ5_A0A0E0PKQ5_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0I705_A0A0E0I705_ORYNI_4536 and tr_Q6DTV6_Q6DTV6_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0I705_A0A0E0I705_ORYNI_4536 and tr_I1QGL4_I1QGL4_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0I705_A0A0E0I705_ORYNI_4536 and tr_A0A0E0EJ71_A0A0E0EJ71_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0I705_A0A0E0I705_ORYNI_4536 and tr_A0A0E0QFT0_A0A0E0QFT0_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0I705_A0A0E0I705_ORYNI_4536 and tr_A0A0D3GXK0_A0A0D3GXK0_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0I705_A0A0E0I705_ORYNI_4536 and tr_Q8GV30_Q8GV30_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_D0NUE0_D0NUE0_PHYIT_403677 and tr_W2Q694_W2Q694_PHYPN_761204 are exactly identical! WARNING: Sequences tr_D0NUE0_D0NUE0_PHYIT_403677 and tr_A0A0W8CIY8_A0A0W8CIY8_PHYNI_4790 are exactly identical! WARNING: Sequences tr_D0NUE0_D0NUE0_PHYIT_403677 and tr_W2L7T2_W2L7T2_PHYPR_4792 are exactly identical! WARNING: Sequences tr_D0NUE0_D0NUE0_PHYIT_403677 and tr_A0A329RNT2_A0A329RNT2_9STRA_29920 are exactly identical! WARNING: Sequences tr_F6Q6C2_F6Q6C2_MACMU_9544 and tr_A0A2K6DQC0_A0A2K6DQC0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A2WJR5_A2WJR5_ORYSI_39946 and tr_I1NJK5_I1NJK5_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A2WJR5_A2WJR5_ORYSI_39946 and tr_A0A0E0MQD6_A0A0E0MQD6_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A2WJR5_A2WJR5_ORYSI_39946 and tr_A0A0D3EIQ3_A0A0D3EIQ3_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A2WJR5_A2WJR5_ORYSI_39946 and tr_A0A0D9Y268_A0A0D9Y268_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A2XJ08_A2XJ08_ORYSI_39946 and tr_A0A0N7KHL0_A0A0N7KHL0_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_B8BNB9_B8BNB9_ORYSI_39946 and tr_I1R4C3_I1R4C3_ORYGL_4538 are exactly identical! WARNING: Sequences tr_B8BNB9_B8BNB9_ORYSI_39946 and tr_A0A0E0RE68_A0A0E0RE68_ORYRU_4529 are exactly identical! WARNING: Sequences tr_B8BNB9_B8BNB9_ORYSI_39946 and tr_A0A0E0BPE5_A0A0E0BPE5_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_B8BNB9_B8BNB9_ORYSI_39946 and tr_Q2QXA8_Q2QXA8_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_I1PD47_I1PD47_ORYGL_4538 and tr_A0A0D9ZA34_A0A0D9ZA34_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_H0ZLG0_H0ZLG0_TAEGU_59729 and tr_A0A091IMK1_A0A091IMK1_EGRGA_188379 are exactly identical! WARNING: Sequences tr_H0ZLG0_H0ZLG0_TAEGU_59729 and tr_A0A091VSQ5_A0A091VSQ5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0ZLG0_H0ZLG0_TAEGU_59729 and tr_A0A091WCC3_A0A091WCC3_OPIHO_30419 are exactly identical! WARNING: Sequences tr_H0ZLG0_H0ZLG0_TAEGU_59729 and tr_A0A0A0AZZ7_A0A0A0AZZ7_CHAVO_50402 are exactly identical! WARNING: Sequences tr_H0ZLG0_H0ZLG0_TAEGU_59729 and tr_A0A218VBI1_A0A218VBI1_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A0E0CGF6_A0A0E0CGF6_9ORYZ_40149 and tr_A0A0D9VCS8_A0A0D9VCS8_9ORYZ_77586 are exactly identical! WARNING: Sequences tr_M0XRS9_M0XRS9_HORVV_112509 and tr_M7ZT37_M7ZT37_TRIUA_4572 are exactly identical! WARNING: Sequences tr_M0XRS9_M0XRS9_HORVV_112509 and tr_A0A3B6QCN5_A0A3B6QCN5_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M4CUG4_M4CUG4_BRARP_51351 and tr_A0A078IUX7_A0A078IUX7_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4DV00_M4DV00_BRARP_51351 and tr_A0A078H5E8_A0A078H5E8_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4E5G6_M4E5G6_BRARP_51351 and tr_A0A078FKC3_A0A078FKC3_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4EBB3_M4EBB3_BRARP_51351 and tr_A0A078HBH7_A0A078HBH7_BRANA_3708 are exactly identical! WARNING: Sequences tr_M8B007_M8B007_TRIUA_4572 and tr_A0A3B6KDV6_A0A3B6KDV6_WHEAT_4565 are exactly identical! WARNING: Sequences tr_W2R4S5_W2R4S5_PHYPN_761204 and tr_A0A0W8D2L1_A0A0W8D2L1_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2R4S5_W2R4S5_PHYPN_761204 and tr_W2KJ21_W2KJ21_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A3B6LHY2_A0A3B6LHY2_WHEAT_4565 and tr_A0A3B6ML06_A0A3B6ML06_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A3B6LZ26_A0A3B6LZ26_WHEAT_4565 and tr_A0A3B6N326_A0A3B6N326_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A015LP18_A0A015LP18_9GLOM_1432141 and tr_A0A2H5R0R1_A0A2H5R0R1_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A067F2E8_A0A067F2E8_CITSI_2711 and tr_V4S9I6_V4S9I6_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067F2E8_A0A067F2E8_CITSI_2711 and tr_A0A2H5NQN4_A0A2H5NQN4_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A067FVA6_A0A067FVA6_CITSI_2711 and tr_V4UBC1_V4UBC1_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067GKK7_A0A067GKK7_CITSI_2711 and tr_V4UJU8_V4UJU8_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067GKK7_A0A067GKK7_CITSI_2711 and tr_A0A2H5N2Q1_A0A2H5N2Q1_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A078FYY3_A0A078FYY3_BRANA_3708 and tr_A0A0D3C7L4_A0A0D3C7L4_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078HAK7_A0A078HAK7_BRANA_3708 and tr_A0A0D3DVN6_A0A0D3DVN6_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078I0L8_A0A078I0L8_BRANA_3708 and tr_A0A078JG21_A0A078JG21_BRANA_3708 are exactly identical! WARNING: Sequences tr_A0A078IKL4_A0A078IKL4_BRANA_3708 and tr_A0A0D3E0X9_A0A0D3E0X9_BRAOL_109376 are exactly identical! WARNING: Sequences tr_V4TTU2_V4TTU2_9ROSI_85681 and tr_A0A2H5NIZ1_A0A2H5NIZ1_CITUN_55188 are exactly identical! WARNING: Sequences tr_V4W9U6_V4W9U6_9ROSI_85681 and tr_A0A2H5N6A2_A0A2H5N6A2_CITUN_55188 are exactly identical! WARNING: Sequences tr_T0QZM6_T0QZM6_9STRA_1156394 and tr_A0A1V9Z303_A0A1V9Z303_9STRA_1202772 are exactly identical! WARNING: Sequences tr_A0A0D2PGM4_A0A0D2PGM4_GOSRA_29730 and tr_A0A1U8PUM5_A0A1U8PUM5_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A091EDF2_A0A091EDF2_CORBR_85066 and tr_A0A087QKG2_A0A087QKG2_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A2I0LNG7_A0A2I0LNG7_COLLI_8932 and tr_A0A1V4JHQ6_A0A1V4JHQ6_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0MVY9_A0A2I0MVY9_COLLI_8932 and tr_A0A1V4KGA9_A0A1V4KGA9_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1S3Y1X6_A0A1S3Y1X6_TOBAC_4097 and tr_A0A1U7YUW3_A0A1U7YUW3_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3ZJS6_A0A1S3ZJS6_TOBAC_4097 and tr_A0A1U7W2D3_A0A1U7W2D3_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3ZZ75_A0A1S3ZZ75_TOBAC_4097 and tr_A0A1U7XLI5_A0A1U7XLI5_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4B743_A0A1S4B743_TOBAC_4097 and tr_A0A1U7VCE1_A0A1U7VCE1_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A226MVI7_A0A226MVI7_CALSU_9009 and tr_A0A226P8Z2_A0A226P8Z2_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0RUF6_A0A2D0RUF6_ICTPU_7998 and tr_W5UIL1_W5UIL1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1U8FXB4_A0A1U8FXB4_CAPAN_4072 and tr_A0A2G3CYT8_A0A2G3CYT8_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2G2ZU17_A0A2G2ZU17_CAPAN_4072 and tr_A0A2G3CRT5_A0A2G3CRT5_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2G3APD0_A0A2G3APD0_CAPAN_4072 and tr_A0A2G3BPY6_A0A2G3BPY6_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2Y9M2A1_A0A2Y9M2A1_DELLE_9749 and tr_A0A2Y9TKZ3_A0A2Y9TKZ3_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 87 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13546/4_raxmlng_ancestral/Q13546.raxml.reduced.phy Alignment comprises 1 partitions and 671 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 671 Gaps: 49.77 % Invariant sites: 0.75 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13546/4_raxmlng_ancestral/Q13546.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13546/3_mltree/Q13546.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 168 / 13440 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -182817.518329 [00:00:00 -182817.518329] Initial branch length optimization [00:00:01 -176230.761827] Model parameter optimization (eps = 0.100000) [00:00:43] Tree #1, final logLikelihood: -175730.936573 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.073332,0.202733) (0.123023,0.222056) (0.363655,0.707460) (0.439991,1.592179) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13546/4_raxmlng_ancestral/Q13546.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13546/4_raxmlng_ancestral/Q13546.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13546/4_raxmlng_ancestral/Q13546.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13546/4_raxmlng_ancestral/Q13546.raxml.log Analysis started: 02-Jun-2021 18:00:02 / finished: 02-Jun-2021 18:00:52 Elapsed time: 49.989 seconds Consumed energy: 2.760 Wh