RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 04-Jun-2021 14:02:29 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q13461/2_msa/Q13461_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q13461/3_mltree/Q13461.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q13461/4_raxmlng_ancestral/Q13461 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622804549 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q13461/2_msa/Q13461_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 319 sites WARNING: Sequences tr_B4QYR8_B4QYR8_DROSI_7240 and sp_P14734_FKH_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QYR8_B4QYR8_DROSI_7240 and tr_B4IH17_B4IH17_DROSE_7238 are exactly identical! WARNING: Sequences tr_A0A1D5NX62_A0A1D5NX62_CHICK_9031 and tr_A0A226MTE7_A0A226MTE7_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5NX62_A0A1D5NX62_CHICK_9031 and tr_A0A226P490_A0A226P490_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q61850_FOXC2_MOUSE_10090 and sp_Q63246_FOXC2_RAT_10116 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_H0XYS0_H0XYS0_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q64732_FOXB1_MOUSE_10090 and tr_A0A1U7SN79_A0A1U7SN79_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_G1RLU0_G1RLU0_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_G3GRN3_G3GRN3_CRIGR_10029 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_E2R277_E2R277_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_H2Q9J4_H2Q9J4_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_F6WWP4_F6WWP4_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and sp_Q99853_FOXB1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_F7D628_F7D628_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_A0A287ANN5_A0A287ANN5_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_D2HLR1_D2HLR1_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_L5K224_L5K224_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_M3XBW1_M3XBW1_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_A0A096NEC7_A0A096NEC7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_A0A0D9SEE6_A0A0D9SEE6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_A0A3Q0D0R3_A0A3Q0D0R3_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_A0A2K5L201_A0A2K5L201_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_A0A2K6AW98_A0A2K6AW98_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_A0A2Y9K7L1_A0A2Y9K7L1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_A0A2Y9NVG0_A0A2Y9NVG0_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Z6V5_M3Z6V5_MUSPF_9669 and tr_A0A2Y9FBI2_A0A2Y9FBI2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2I2ZRB3_A0A2I2ZRB3_GORGO_9595 and tr_H2R6M6_H2R6M6_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZRB3_A0A2I2ZRB3_GORGO_9595 and sp_Q5VYV0_FOXB2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QMZ7_G3QMZ7_GORGO_9595 and tr_H2QGM2_H2QGM2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QMZ7_G3QMZ7_GORGO_9595 and sp_P55318_FOXA3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R1I1_G3R1I1_GORGO_9595 and tr_A0A096NKI7_A0A096NKI7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RF46_G3RF46_GORGO_9595 and tr_H2QBP0_H2QBP0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RYD0_G3RYD0_GORGO_9595 and tr_A0A2I3TMI6_A0A2I3TMI6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RYD0_G3RYD0_GORGO_9595 and sp_Q9Y261_FOXA2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RYD0_G3RYD0_GORGO_9595 and tr_F7HZ20_F7HZ20_CALJA_9483 are exactly identical! WARNING: Sequences tr_Q28X48_Q28X48_DROPS_46245 and tr_B4H512_B4H512_DROPE_7234 are exactly identical! WARNING: Sequences tr_H2R467_H2R467_PANTR_9598 and sp_O00358_FOXE1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2RA05_H2RA05_PANTR_9598 and sp_Q99958_FOXC2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2RA05_H2RA05_PANTR_9598 and tr_F7D313_F7D313_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2RA05_H2RA05_PANTR_9598 and tr_A0A0D9SAX6_A0A0D9SAX6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2RA05_H2RA05_PANTR_9598 and tr_A0A2K5L3F0_A0A2K5L3F0_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2RA05_H2RA05_PANTR_9598 and tr_A0A2K6CY95_A0A2K6CY95_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6XBS2_F6XBS2_MONDO_13616 and tr_G3WLY9_G3WLY9_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A3B5QPF1_A0A3B5QPF1_XIPMA_8083 and tr_A0A096MH41_A0A096MH41_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5QXG1_A0A3B5QXG1_XIPMA_8083 and tr_A0A087YBY6_A0A087YBY6_POEFO_48698 are exactly identical! WARNING: Sequences tr_H9J6F9_H9J6F9_BOMMO_7091 and sp_Q17241_SGF1_BOMMO_7091 are exactly identical! WARNING: Sequences tr_A0A158NCG0_A0A158NCG0_ATTCE_12957 and tr_A0A195BXA0_A0A195BXA0_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158ND77_A0A158ND77_ATTCE_12957 and tr_A0A195DJ83_A0A195DJ83_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158ND77_A0A158ND77_ATTCE_12957 and tr_A0A195B0T4_A0A195B0T4_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158ND77_A0A158ND77_ATTCE_12957 and tr_A0A195FHP9_A0A195FHP9_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NJ79_A0A158NJ79_ATTCE_12957 and tr_A0A195B6K2_A0A195B6K2_9HYME_520822 are exactly identical! WARNING: Sequences tr_H2TV22_H2TV22_TAKRU_31033 and tr_Q4SM19_Q4SM19_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A1D5RI96_A0A1D5RI96_MACMU_9544 and tr_A0A2K6D0W0_A0A2K6D0W0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6Q3J5_F6Q3J5_MACMU_9544 and tr_A0A2I3NEP0_A0A2I3NEP0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6Q3J5_F6Q3J5_MACMU_9544 and tr_A0A0D9S242_A0A0D9S242_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6Q3J5_F6Q3J5_MACMU_9544 and tr_A0A2K5NDQ3_A0A2K5NDQ3_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6Q3J5_F6Q3J5_MACMU_9544 and tr_A0A2K6DF64_A0A2K6DF64_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6Q3J5_F6Q3J5_MACMU_9544 and tr_A0A2K5Z9S7_A0A2K5Z9S7_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7D2T8_F7D2T8_MACMU_9544 and tr_A0A0D9RF89_A0A0D9RF89_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7D2T8_F7D2T8_MACMU_9544 and tr_A0A2K5M2A1_A0A2K5M2A1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7D2T8_F7D2T8_MACMU_9544 and tr_A0A2K6ATQ4_A0A2K6ATQ4_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7DF65_F7DF65_MACMU_9544 and tr_A0A2K6B1B8_A0A2K6B1B8_MACNE_9545 are exactly identical! WARNING: Sequences tr_E5SNE3_E5SNE3_TRISP_6334 and tr_A0A0V0VXB8_A0A0V0VXB8_9BILA_181606 are exactly identical! WARNING: Sequences tr_H0Z4R5_H0Z4R5_TAEGU_59729 and tr_A0A1V4JDA3_A0A1V4JDA3_PATFA_372326 are exactly identical! WARNING: Sequences tr_F7DU19_F7DU19_CALJA_9483 and tr_E1B7H0_E1B7H0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A287AFQ6_A0A287AFQ6_PIG_9823 and tr_A0A2Y9NU60_A0A2Y9NU60_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A337RZN3_A0A337RZN3_FELCA_9685 and tr_A0A2Y9K9E1_A0A2Y9K9E1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3WGT1_M3WGT1_FELCA_9685 and tr_A0A2U3WZN7_A0A2U3WZN7_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A096NSE8_A0A096NSE8_PAPAN_9555 and tr_A0A2K5NVF9_A0A2K5NVF9_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096P134_A0A096P134_PAPAN_9555 and tr_A0A2K5KUQ4_A0A2K5KUQ4_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096P134_A0A096P134_PAPAN_9555 and tr_A0A2K6D1D5_A0A2K6D1D5_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0L0BYY6_A0A0L0BYY6_LUCCU_7375 and tr_A0A0L0CEH8_A0A0L0CEH8_LUCCU_7375 are exactly identical! WARNING: Sequences tr_A0A091EBU0_A0A091EBU0_CORBR_85066 and tr_A0A093QDW4_A0A093QDW4_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EBU0_A0A091EBU0_CORBR_85066 and tr_A0A091GA95_A0A091GA95_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091J102_A0A091J102_EGRGA_188379 and tr_A0A091G702_A0A091G702_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091J102_A0A091J102_EGRGA_188379 and tr_A0A091IFM1_A0A091IFM1_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091USI2_A0A091USI2_NIPNI_128390 and tr_A0A087QY64_A0A087QY64_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A0V0S0L0_A0A0V0S0L0_9BILA_6336 and tr_A0A0V0WDS8_A0A0V0WDS8_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0S0L0_A0A0V0S0L0_9BILA_6336 and tr_A0A0V0VLI0_A0A0V0VLI0_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0S0L0_A0A0V0S0L0_9BILA_6336 and tr_A0A0V1LJX1_A0A0V1LJX1_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0S0L0_A0A0V0S0L0_9BILA_6336 and tr_A0A0V0XSW4_A0A0V0XSW4_TRIPS_6337 are exactly identical! WARNING: Sequences tr_A0A0V0S0L0_A0A0V0S0L0_9BILA_6336 and tr_A0A0V1M6V3_A0A0V1M6V3_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V0S0L0_A0A0V0S0L0_9BILA_6336 and tr_A0A0V1PCE1_A0A0V1PCE1_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0S0L0_A0A0V0S0L0_9BILA_6336 and tr_A0A0V1H2V4_A0A0V1H2V4_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3KIZ3_A0A1S3KIZ3_SALSA_8030 and tr_A0A060Y3C7_A0A060Y3C7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3LX54_A0A1S3LX54_SALSA_8030 and tr_A0A060Y253_A0A060Y253_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3N0J7_A0A1S3N0J7_SALSA_8030 and tr_A0A060Z8G9_A0A060Z8G9_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MS78_A0A226MS78_CALSU_9009 and tr_A0A226PFX9_A0A226PFX9_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226MSM9_A0A226MSM9_CALSU_9009 and tr_A0A226PPN8_A0A226PPN8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NF86_A0A226NF86_CALSU_9009 and tr_A0A226PPX5_A0A226PPX5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NN27_A0A226NN27_CALSU_9009 and tr_A0A226PHE3_A0A226PHE3_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2U4AQS4_A0A2U4AQS4_TURTR_9739 and tr_A0A2Y9PSS8_A0A2Y9PSS8_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4AQS4_A0A2U4AQS4_TURTR_9739 and tr_A0A2Y9SL73_A0A2Y9SL73_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3WEA6_A0A2U3WEA6_ODORO_9708 and tr_A0A2U3YUG8_A0A2U3YUG8_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 94 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q13461/4_raxmlng_ancestral/Q13461.raxml.reduced.phy Alignment comprises 1 partitions and 319 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 319 Gaps: 37.27 % Invariant sites: 5.64 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q13461/4_raxmlng_ancestral/Q13461.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q13461/3_mltree/Q13461.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 80 / 6400 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -189156.173389 [00:00:00 -189156.173389] Initial branch length optimization [00:00:02 -102483.335955] Model parameter optimization (eps = 0.100000) [00:05:32] Tree #1, final logLikelihood: -102184.636149 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.163513,0.040465) (0.115886,0.079025) (0.143351,0.630503) (0.577251,1.548449) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q13461/4_raxmlng_ancestral/Q13461.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q13461/4_raxmlng_ancestral/Q13461.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q13461/4_raxmlng_ancestral/Q13461.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q13461/4_raxmlng_ancestral/Q13461.raxml.log Analysis started: 04-Jun-2021 14:02:29 / finished: 04-Jun-2021 14:08:08 Elapsed time: 338.843 seconds