RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 02:34:32 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13148/2_msa/Q13148_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13148/3_mltree/Q13148.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13148/4_raxmlng_ancestral/Q13148 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622676872 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13148/2_msa/Q13148_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 414 sites WARNING: Sequences tr_B4Q596_B4Q596_DROSI_7240 and tr_B4HY00_B4HY00_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QB08_B4QB08_DROSI_7240 and tr_B4I8U6_B4I8U6_DROSE_7238 are exactly identical! WARNING: Sequences tr_E2B0H2_E2B0H2_CAMFO_104421 and tr_A0A026WIY9_A0A026WIY9_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2B0H2_E2B0H2_CAMFO_104421 and tr_A0A195C3Z0_A0A195C3Z0_9HYME_456900 are exactly identical! WARNING: Sequences tr_F1NBY1_F1NBY1_CHICK_9031 and tr_G1MZJ1_G1MZJ1_MELGA_9103 are exactly identical! WARNING: Sequences tr_M3YYC9_M3YYC9_MUSPF_9669 and tr_F6S762_F6S762_MONDO_13616 are exactly identical! WARNING: Sequences tr_A0A2I3G8J5_A0A2I3G8J5_NOMLE_61853 and tr_A0A096NBQ0_A0A096NBQ0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3G8J5_A0A2I3G8J5_NOMLE_61853 and tr_A0A0D9S8N2_A0A0D9S8N2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3G8J5_A0A2I3G8J5_NOMLE_61853 and tr_A0A2K6BKI8_A0A2K6BKI8_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2N950_H2N950_PONAB_9601 and tr_H2PY00_H2PY00_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2N950_H2N950_PONAB_9601 and sp_Q13148_TADBP_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2N950_H2N950_PONAB_9601 and tr_A0A2R9C1F8_A0A2R9C1F8_PANPA_9597 are exactly identical! WARNING: Sequences tr_Q29CQ4_Q29CQ4_DROPS_46245 and tr_B4GCQ9_B4GCQ9_DROPE_7234 are exactly identical! WARNING: Sequences tr_B8NPF1_B8NPF1_ASPFN_332952 and tr_Q2UMK0_Q2UMK0_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8NPF1_B8NPF1_ASPFN_332952 and tr_A0A0F0I8J9_A0A0F0I8J9_ASPPU_1403190 are exactly identical! WARNING: Sequences tr_A0A179UNV1_A0A179UNV1_BLAGS_559298 and tr_A0A179TXC7_A0A179TXC7_AJEDR_559297 are exactly identical! WARNING: Sequences tr_E2QS43_E2QS43_CANLF_9615 and tr_G3WM39_G3WM39_SARHA_9305 are exactly identical! WARNING: Sequences tr_E2QS43_E2QS43_CANLF_9615 and tr_A0A2U4AZQ2_A0A2U4AZQ2_TURTR_9739 are exactly identical! WARNING: Sequences tr_E2QS43_E2QS43_CANLF_9615 and tr_A0A2U3WQ24_A0A2U3WQ24_ODORO_9708 are exactly identical! WARNING: Sequences tr_E2QS43_E2QS43_CANLF_9615 and tr_A0A2U3XVS7_A0A2U3XVS7_LEPWE_9713 are exactly identical! WARNING: Sequences tr_E2QS43_E2QS43_CANLF_9615 and tr_A0A2Y9RU47_A0A2Y9RU47_TRIMA_127582 are exactly identical! WARNING: Sequences tr_E2QS43_E2QS43_CANLF_9615 and tr_A0A2Y9KF50_A0A2Y9KF50_ENHLU_391180 are exactly identical! WARNING: Sequences tr_E2QS43_E2QS43_CANLF_9615 and tr_A0A2Y9Q513_A0A2Y9Q513_DELLE_9749 are exactly identical! WARNING: Sequences tr_E2QS43_E2QS43_CANLF_9615 and tr_A0A2Y9SRR7_A0A2Y9SRR7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_F9F7U3_F9F7U3_FUSOF_660025 and tr_N4TSZ9_N4TSZ9_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9F7U3_F9F7U3_FUSOF_660025 and tr_X0D7K7_X0D7K7_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9F7U3_F9F7U3_FUSOF_660025 and tr_A0A2H3T4N7_A0A2H3T4N7_FUSOX_5507 are exactly identical! WARNING: Sequences tr_E9CV68_E9CV68_COCPS_443226 and tr_A0A0J6Y1M1_A0A0J6Y1M1_COCIT_404692 are exactly identical! WARNING: Sequences tr_E9EJG3_E9EJG3_METRA_655844 and tr_A0A0D9NTK1_A0A0D9NTK1_METAN_1291518 are exactly identical! WARNING: Sequences tr_M4AA79_M4AA79_XIPMA_8083 and tr_A0A087XEN7_A0A087XEN7_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AQK6_M4AQK6_XIPMA_8083 and tr_A0A087YDR7_A0A087YDR7_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A087ZY56_A0A087ZY56_APIME_7460 and tr_A0A0N0U4E7_A0A0N0U4E7_9HYME_166423 are exactly identical! WARNING: Sequences tr_A0A087ZY56_A0A087ZY56_APIME_7460 and tr_A0A0L7R0L6_A0A0L7R0L6_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A087ZY56_A0A087ZY56_APIME_7460 and tr_A0A2A3E4Y9_A0A2A3E4Y9_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NK58_A0A158NK58_ATTCE_12957 and tr_F4W8F4_F4W8F4_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NK58_A0A158NK58_ATTCE_12957 and tr_A0A151X6Y2_A0A151X6Y2_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NK58_A0A158NK58_ATTCE_12957 and tr_A0A195EHV4_A0A195EHV4_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NK58_A0A158NK58_ATTCE_12957 and tr_A0A195FB69_A0A195FB69_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A0E0IDP1_A0A0E0IDP1_ORYNI_4536 and tr_B8BC17_B8BC17_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0E0IDP1_A0A0E0IDP1_ORYNI_4536 and tr_I1QJQ9_I1QJQ9_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0IDP1_A0A0E0IDP1_ORYNI_4536 and tr_A0A0E0QKK6_A0A0E0QKK6_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0J4M9_A0A0E0J4M9_ORYNI_4536 and tr_I1R1R8_I1R1R8_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A0A0E0J4M9_A0A0E0J4M9_ORYNI_4536 and tr_A0A0D3HPA0_A0A0D3HPA0_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0J4M9_A0A0E0J4M9_ORYNI_4536 and tr_A0A0E0BLI0_A0A0E0BLI0_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0J4M9_A0A0E0J4M9_ORYNI_4536 and tr_Q2R0P4_Q2R0P4_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_G7XB92_G7XB92_ASPKW_1033177 and tr_A0A146FE36_A0A146FE36_9EURO_1069201 are exactly identical! WARNING: Sequences tr_G7XB92_G7XB92_ASPKW_1033177 and tr_A0A317URD0_A0A317URD0_9EURO_1448314 are exactly identical! WARNING: Sequences tr_B8B7U2_B8B7U2_ORYSI_39946 and tr_I1QBQ4_I1QBQ4_ORYGL_4538 are exactly identical! WARNING: Sequences tr_B8B7U2_B8B7U2_ORYSI_39946 and tr_A0A0E0ALY2_A0A0E0ALY2_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_H0YYI1_H0YYI1_TAEGU_59729 and tr_A0A091F3Q1_A0A091F3Q1_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0YYI1_H0YYI1_TAEGU_59729 and tr_A0A218UPU5_A0A218UPU5_9PASE_299123 are exactly identical! WARNING: Sequences tr_F2SJQ7_F2SJQ7_TRIRC_559305 and tr_D4AL72_D4AL72_ARTBC_663331 are exactly identical! WARNING: Sequences tr_F2SJQ7_F2SJQ7_TRIRC_559305 and tr_F2PND4_F2PND4_TRIEC_559882 are exactly identical! WARNING: Sequences tr_F2E3F5_F2E3F5_HORVV_112509 and tr_M7ZPY8_M7ZPY8_TRIUA_4572 are exactly identical! WARNING: Sequences tr_F2E3F5_F2E3F5_HORVV_112509 and tr_A0A3B6HWI4_A0A3B6HWI4_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M4FG07_M4FG07_BRARP_51351 and tr_A0A078G9R8_A0A078G9R8_BRANA_3708 are exactly identical! WARNING: Sequences tr_M2UCW8_M2UCW8_COCH5_701091 and tr_W6YHU2_W6YHU2_COCCA_930089 are exactly identical! WARNING: Sequences tr_M2UCW8_M2UCW8_COCH5_701091 and tr_W6Z583_W6Z583_COCMI_930090 are exactly identical! WARNING: Sequences tr_A0A017SA74_A0A017SA74_9EURO_1388766 and tr_A0A1L9VVW3_A0A1L9VVW3_ASPGL_1160497 are exactly identical! WARNING: Sequences tr_A0A015JYM1_A0A015JYM1_9GLOM_1432141 and tr_A0A2Z6QLH4_A0A2Z6QLH4_9GLOM_94130 are exactly identical! WARNING: Sequences tr_A0A044R0Y4_A0A044R0Y4_ONCVO_6282 and tr_A0A182E262_A0A182E262_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A044RF39_A0A044RF39_ONCVO_6282 and tr_A0A182ER76_A0A182ER76_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A067EG99_A0A067EG99_CITSI_2711 and tr_V4S429_V4S429_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A074WTW3_A0A074WTW3_9PEZI_1043004 and tr_A0A074VEN4_A0A074VEN4_9PEZI_1043003 are exactly identical! WARNING: Sequences tr_A0A078F0K4_A0A078F0K4_BRANA_3708 and tr_A0A0D3BA81_A0A0D3BA81_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078HDU8_A0A078HDU8_BRANA_3708 and tr_A0A078JLP2_A0A078JLP2_BRANA_3708 are exactly identical! WARNING: Sequences tr_A0A078IJF9_A0A078IJF9_BRANA_3708 and tr_A0A0D3DME7_A0A0D3DME7_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A0A2V8B9_A0A0A2V8B9_BEABA_1245745 and tr_A0A162JPY5_A0A162JPY5_9HYPO_1081107 are exactly identical! WARNING: Sequences tr_V4WGH1_V4WGH1_9ROSI_85681 and tr_A0A2H5MZM1_A0A2H5MZM1_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A0D2NBK0_A0A0D2NBK0_GOSRA_29730 and tr_A0A1U8P654_A0A1U8P654_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2RUA8_A0A0D2RUA8_GOSRA_29730 and tr_A0A1U8KEN0_A0A1U8KEN0_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2VCA0_A0A0D2VCA0_GOSRA_29730 and tr_A0A1U8JSS9_A0A1U8JSS9_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A151N3U6_A0A151N3U6_ALLMI_8496 and tr_A0A1U7R2H0_A0A1U7R2H0_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091JMM7_A0A091JMM7_EGRGA_188379 and tr_A0A091VW23_A0A091VW23_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A1S3XAJ1_A0A1S3XAJ1_TOBAC_4097 and tr_A0A1U7XFM4_A0A1U7XFM4_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3Y7U5_A0A1S3Y7U5_TOBAC_4097 and tr_A0A1U7Y1S7_A0A1U7Y1S7_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3YQ56_A0A1S3YQ56_TOBAC_4097 and tr_A0A1U7XAP8_A0A1U7XAP8_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3ZA30_A0A1S3ZA30_TOBAC_4097 and tr_A0A1U7XWC4_A0A1U7XWC4_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3ZD04_A0A1S3ZD04_TOBAC_4097 and tr_A0A1U7WFE5_A0A1U7WFE5_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AW35_A0A1S4AW35_TOBAC_4097 and tr_A0A1U7WML3_A0A1U7WML3_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4AZM8_A0A1S4AZM8_TOBAC_4097 and tr_A0A1U7VTY2_A0A1U7VTY2_NICSY_4096 are exactly identical! WARNING: Sequences tr_C0HAL0_C0HAL0_SALSA_8030 and tr_A0A060XAX4_A0A060XAX4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2D0RX33_A0A2D0RX33_ICTPU_7998 and tr_A0A2D0RX45_A0A2D0RX45_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RX33_A0A2D0RX33_ICTPU_7998 and tr_A0A2D0RYM8_A0A2D0RYM8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SPB8_A0A2D0SPB8_ICTPU_7998 and tr_A0A2D0SPX9_A0A2D0SPX9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2G2YIY9_A0A2G2YIY9_CAPAN_4072 and tr_A0A2G3BC45_A0A2G3BC45_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2Y9MS98_A0A2Y9MS98_DELLE_9749 and tr_A0A2Y9S076_A0A2Y9S076_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 87 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13148/4_raxmlng_ancestral/Q13148.raxml.reduced.phy Alignment comprises 1 partitions and 414 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 414 Gaps: 34.23 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13148/4_raxmlng_ancestral/Q13148.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13148/3_mltree/Q13148.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 104 / 8320 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -130403.241446 [00:00:00 -130403.241446] Initial branch length optimization [00:00:01 -128250.620230] Model parameter optimization (eps = 0.100000) [00:00:35] Tree #1, final logLikelihood: -127752.441384 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.125258,0.312076) (0.119061,0.351776) (0.297446,0.781601) (0.458235,1.498233) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13148/4_raxmlng_ancestral/Q13148.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13148/4_raxmlng_ancestral/Q13148.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13148/4_raxmlng_ancestral/Q13148.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q13148/4_raxmlng_ancestral/Q13148.raxml.log Analysis started: 03-Jun-2021 02:34:32 / finished: 03-Jun-2021 02:35:11 Elapsed time: 39.454 seconds Consumed energy: 1.712 Wh