RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 04-Jul-2021 07:26:11 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13127/2_msa/Q13127_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13127/3_mltree/Q13127 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13127/2_msa/Q13127_trimmed_msa.fasta
[00:00:00] Loaded alignment with 999 taxa and 235 sites

WARNING: Sequences tr_M3XNS2_M3XNS2_MUSPF_9669 and tr_J9NRL1_J9NRL1_CANLF_9615 are exactly identical!
WARNING: Sequences tr_M3Y041_M3Y041_MUSPF_9669 and tr_A0A2Y9JWM0_A0A2Y9JWM0_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_M3Y5J1_M3Y5J1_MUSPF_9669 and tr_A0A2Y9IJV5_A0A2Y9IJV5_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_G1R5T1_G1R5T1_NOMLE_61853 and tr_A0A2I2YFU8_A0A2I2YFU8_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1R5T1_G1R5T1_NOMLE_61853 and tr_H2QKL1_H2QKL1_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1R5T1_G1R5T1_NOMLE_61853 and sp_Q9NPA5_ZF64A_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1R5T1_G1R5T1_NOMLE_61853 and tr_A0A2R9A1X7_A0A2R9A1X7_PANPA_9597 are exactly identical!
WARNING: Sequences tr_G1RC39_G1RC39_NOMLE_61853 and tr_G3QIC6_G3QIC6_GORGO_9595 are exactly identical!
WARNING: Sequences tr_G1RC39_G1RC39_NOMLE_61853 and tr_H2PDC1_H2PDC1_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G1RC39_G1RC39_NOMLE_61853 and tr_A0A2J8PEU4_A0A2J8PEU4_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1RC39_G1RC39_NOMLE_61853 and sp_Q13127_REST_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1RC39_G1RC39_NOMLE_61853 and tr_F6ZBI4_F6ZBI4_MACMU_9544 are exactly identical!
WARNING: Sequences tr_G1RC39_G1RC39_NOMLE_61853 and tr_A0A096N6Z1_A0A096N6Z1_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1RC39_G1RC39_NOMLE_61853 and tr_A0A0D9QYK3_A0A0D9QYK3_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1RC39_G1RC39_NOMLE_61853 and tr_A0A2K6DCS6_A0A2K6DCS6_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1RC39_G1RC39_NOMLE_61853 and tr_A0A2K5XFA6_A0A2K5XFA6_MANLE_9568 are exactly identical!
WARNING: Sequences tr_G1RC39_G1RC39_NOMLE_61853 and tr_A0A2R8ZEK2_A0A2R8ZEK2_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I2ZVJ6_A0A2I2ZVJ6_GORGO_9595 and tr_A0A2J8LZ58_A0A2J8LZ58_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I2ZVJ6_A0A2I2ZVJ6_GORGO_9595 and sp_Q9UJL9_ZF69B_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3RZF7_G3RZF7_GORGO_9595 and tr_H2NWL2_H2NWL2_PONAB_9601 are exactly identical!
WARNING: Sequences tr_G3RZF7_G3RZF7_GORGO_9595 and tr_H2QEQ2_H2QEQ2_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G3RZF7_G3RZF7_GORGO_9595 and sp_Q9C0G0_ZN407_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3RZF7_G3RZF7_GORGO_9595 and tr_F7HRA6_F7HRA6_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G3RZF7_G3RZF7_GORGO_9595 and tr_G7PW94_G7PW94_MACFA_9541 are exactly identical!
WARNING: Sequences tr_G3RZF7_G3RZF7_GORGO_9595 and tr_A0A096MWZ9_A0A096MWZ9_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G3RZF7_G3RZF7_GORGO_9595 and tr_A0A0D9S057_A0A0D9S057_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G3RZF7_G3RZF7_GORGO_9595 and tr_A0A1U7UPJ5_A0A1U7UPJ5_TARSY_1868482 are exactly identical!
WARNING: Sequences tr_G3RZF7_G3RZF7_GORGO_9595 and tr_A0A2K5KH64_A0A2K5KH64_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G3RZF7_G3RZF7_GORGO_9595 and tr_A0A2K6C0N3_A0A2K6C0N3_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G3RZF7_G3RZF7_GORGO_9595 and tr_A0A2K5ZDD6_A0A2K5ZDD6_MANLE_9568 are exactly identical!
WARNING: Sequences tr_E2R5D8_E2R5D8_CANLF_9615 and tr_A0A2U3WZB1_A0A2U3WZB1_ODORO_9708 are exactly identical!
WARNING: Sequences tr_E2R5D8_E2R5D8_CANLF_9615 and tr_A0A2Y9IM23_A0A2Y9IM23_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_E2R5D8_E2R5D8_CANLF_9615 and tr_A0A384CN06_A0A384CN06_URSMA_29073 are exactly identical!
WARNING: Sequences tr_F1PP47_F1PP47_CANLF_9615 and tr_D2H8J0_D2H8J0_AILME_9646 are exactly identical!
WARNING: Sequences tr_F1PP47_F1PP47_CANLF_9615 and tr_L5JX97_L5JX97_PTEAL_9402 are exactly identical!
WARNING: Sequences tr_F1PP47_F1PP47_CANLF_9615 and tr_A0A2I2UP63_A0A2I2UP63_FELCA_9685 are exactly identical!
WARNING: Sequences tr_F1PP47_F1PP47_CANLF_9615 and tr_A0A384CYZ5_A0A384CYZ5_URSMA_29073 are exactly identical!
WARNING: Sequences tr_H2QHB7_H2QHB7_PANTR_9598 and tr_A0A2R9AFG9_A0A2R9AFG9_PANPA_9597 are exactly identical!
WARNING: Sequences tr_W5P4D0_W5P4D0_SHEEP_9940 and tr_W5P4M3_W5P4M3_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_F7GSR7_F7GSR7_MACMU_9544 and tr_A0A2K6DQD9_A0A2K6DQD9_MACNE_9545 are exactly identical!
WARNING: Sequences tr_H0Z2U0_H0Z2U0_TAEGU_59729 and tr_A0A218UMG2_A0A218UMG2_9PASE_299123 are exactly identical!
WARNING: Sequences tr_H0ZFN3_H0ZFN3_TAEGU_59729 and tr_A0A091FBH5_A0A091FBH5_CORBR_85066 are exactly identical!
WARNING: Sequences tr_G7NUD5_G7NUD5_MACFA_9541 and tr_A0A2K6AX18_A0A2K6AX18_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G7PG00_G7PG00_MACFA_9541 and tr_A0A096NNM7_A0A096NNM7_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G7PG00_G7PG00_MACFA_9541 and tr_A0A0D9RRY1_A0A0D9RRY1_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G7PG00_G7PG00_MACFA_9541 and tr_A0A2K5NP04_A0A2K5NP04_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G7PG00_G7PG00_MACFA_9541 and tr_A0A2K6DFW3_A0A2K6DFW3_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G7PG00_G7PG00_MACFA_9541 and tr_A0A2K5Z901_A0A2K5Z901_MANLE_9568 are exactly identical!
WARNING: Sequences tr_A7MBK4_A7MBK4_BOVIN_9913 and tr_E1BCT1_E1BCT1_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_A0A0D9S7M7_A0A0D9S7M7_CHLSB_60711 and tr_A0A2K5LVZ2_A0A2K5LVZ2_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A091V9R1_A0A091V9R1_NIPNI_128390 and tr_A0A087QRT8_A0A087QRT8_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A091VZJ8_A0A091VZJ8_NIPNI_128390 and tr_A0A087R9R0_A0A087R9R0_APTFO_9233 are exactly identical!
WARNING: Sequences tr_A0A091VZJ8_A0A091VZJ8_NIPNI_128390 and tr_A0A0A0B2Y1_A0A0A0B2Y1_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_A0A093JJD6_A0A093JJD6_STRCA_441894 and tr_A0A091HQG1_A0A091HQG1_CALAN_9244 are exactly identical!
WARNING: Sequences tr_A0A2I0LXN2_A0A2I0LXN2_COLLI_8932 and tr_A0A1V4JT41_A0A1V4JT41_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A2U4BHS7_A0A2U4BHS7_TURTR_9739 and tr_A0A2Y9MEG5_A0A2Y9MEG5_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4BHS7_A0A2U4BHS7_TURTR_9739 and tr_A0A2Y9TJ36_A0A2Y9TJ36_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2U3ZW15_A0A2U3ZW15_ODORO_9708 and tr_A0A2U3Y1Q8_A0A2U3Y1Q8_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_A0A2Y9MA63_A0A2Y9MA63_DELLE_9749 and tr_A0A2Y9MIW7_A0A2Y9MIW7_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2Y9TDK8_A0A2Y9TDK8_PHYCD_9755 and tr_A0A383YRH3_A0A383YRH3_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 60

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13127/3_mltree/Q13127.raxml.reduced.phy

Alignment comprises 1 partitions and 235 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 235 / 235
Gaps: 12.60 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13127/3_mltree/Q13127.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 999 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 235 / 18800
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -378050.376839] Initial branch length optimization
[00:00:04 -325966.943311] Model parameter optimization (eps = 10.000000)
[00:00:45 -324621.880254] AUTODETECT spr round 1 (radius: 5)
[00:03:48 -256127.156754] AUTODETECT spr round 2 (radius: 10)
[00:07:19 -204966.676233] AUTODETECT spr round 3 (radius: 15)
[00:12:00 -181372.382000] AUTODETECT spr round 4 (radius: 20)
[00:17:48 -171329.170374] AUTODETECT spr round 5 (radius: 25)
[00:24:30 -169289.768669] SPR radius for FAST iterations: 25 (autodetect)
[00:24:30 -169289.768669] Model parameter optimization (eps = 3.000000)
[00:24:54 -169123.845592] FAST spr round 1 (radius: 25)
[00:33:51 -160625.318393] FAST spr round 2 (radius: 25)
[00:40:48 -160042.569466] FAST spr round 3 (radius: 25)
[00:46:13 -159979.520228] FAST spr round 4 (radius: 25)
[00:51:00 -159961.907531] FAST spr round 5 (radius: 25)
[00:55:23 -159937.410079] FAST spr round 6 (radius: 25)
[00:59:22 -159925.064706] FAST spr round 7 (radius: 25)
[01:03:01 -159923.547046] FAST spr round 8 (radius: 25)
[01:06:31 -159923.546764] Model parameter optimization (eps = 1.000000)
[01:06:51 -159920.626252] SLOW spr round 1 (radius: 5)
[01:11:10 -159857.380358] SLOW spr round 2 (radius: 5)
[01:15:22 -159851.549548] SLOW spr round 3 (radius: 5)
[01:19:17 -159851.549475] SLOW spr round 4 (radius: 10)
[01:23:43 -159831.162946] SLOW spr round 5 (radius: 5)
[01:28:24 -159821.655874] SLOW spr round 6 (radius: 5)
[01:32:35 -159821.053109] SLOW spr round 7 (radius: 5)
[01:36:34 -159821.052305] SLOW spr round 8 (radius: 10)
[01:40:58 -159818.420550] SLOW spr round 9 (radius: 5)
[01:45:31 -159817.280844] SLOW spr round 10 (radius: 5)
[01:49:03 -159817.280631] SLOW spr round 11 (radius: 10)
[01:53:03 -159816.893175] SLOW spr round 12 (radius: 5)
[01:57:05 -159816.893157] SLOW spr round 13 (radius: 10)
[02:01:36 -159815.437590] SLOW spr round 14 (radius: 5)
[02:05:42 -159813.513277] SLOW spr round 15 (radius: 5)
[02:09:26 -159813.512767] SLOW spr round 16 (radius: 10)
[02:13:25 -159813.512725] SLOW spr round 17 (radius: 15)
[02:20:58 -159799.643316] SLOW spr round 18 (radius: 5)
[02:25:16 -159783.800591] SLOW spr round 19 (radius: 5)
[02:29:15 -159781.492523] SLOW spr round 20 (radius: 5)
[02:32:50 -159781.492281] SLOW spr round 21 (radius: 10)
[02:36:53 -159769.612110] SLOW spr round 22 (radius: 5)
[02:40:51 -159763.555462] SLOW spr round 23 (radius: 5)
[02:44:29 -159758.839470] SLOW spr round 24 (radius: 5)
[02:47:55 -159758.839295] SLOW spr round 25 (radius: 10)
[02:51:44 -159754.998463] SLOW spr round 26 (radius: 5)
[02:55:42 -159748.146479] SLOW spr round 27 (radius: 5)
[02:59:23 -159748.062832] SLOW spr round 28 (radius: 10)
[03:03:30 -159748.062795] SLOW spr round 29 (radius: 15)
[03:11:22 -159744.753231] SLOW spr round 30 (radius: 5)
[03:15:35 -159739.872473] SLOW spr round 31 (radius: 5)
[03:19:16 -159739.872233] SLOW spr round 32 (radius: 10)
[03:23:20 -159739.872229] SLOW spr round 33 (radius: 15)
[03:31:12 -159736.826420] SLOW spr round 34 (radius: 5)
[03:35:29 -159734.675959] SLOW spr round 35 (radius: 5)
[03:39:16 -159734.675076] SLOW spr round 36 (radius: 10)
[03:43:28 -159733.620150] SLOW spr round 37 (radius: 5)
[03:47:29 -159733.619705] SLOW spr round 38 (radius: 10)
[03:52:02 -159733.619701] SLOW spr round 39 (radius: 15)
[03:59:51 -159733.590400] SLOW spr round 40 (radius: 20)
[04:09:47 -159730.352206] SLOW spr round 41 (radius: 5)
[04:14:01 -159729.145108] SLOW spr round 42 (radius: 5)
[04:17:50 -159729.051243] SLOW spr round 43 (radius: 10)
[04:21:58 -159727.774136] SLOW spr round 44 (radius: 5)
[04:25:50 -159726.370666] SLOW spr round 45 (radius: 5)
[04:29:23 -159726.370617] SLOW spr round 46 (radius: 10)
[04:33:17 -159726.370617] SLOW spr round 47 (radius: 15)
[04:40:56 -159726.370617] SLOW spr round 48 (radius: 20)
[04:50:33 -159725.758771] SLOW spr round 49 (radius: 5)
[04:54:51 -159725.426578] SLOW spr round 50 (radius: 5)
[04:58:44 -159725.426081] SLOW spr round 51 (radius: 10)
[05:02:58 -159725.426079] SLOW spr round 52 (radius: 15)
[05:10:58 -159725.426079] SLOW spr round 53 (radius: 20)
[05:20:57 -159725.426079] SLOW spr round 54 (radius: 25)
[05:30:27 -159722.888217] SLOW spr round 55 (radius: 5)
[05:34:51 -159720.919455] SLOW spr round 56 (radius: 5)
[05:38:47 -159720.918533] SLOW spr round 57 (radius: 10)
[05:41:39] [worker #2] ML tree search #3, logLikelihood: -159684.670744
[05:43:09 -159720.918512] SLOW spr round 58 (radius: 15)
[05:51:02 -159720.918512] SLOW spr round 59 (radius: 20)
[06:00:57 -159720.918512] SLOW spr round 60 (radius: 25)
[06:10:29 -159720.918512] Model parameter optimization (eps = 0.100000)

[06:10:43] [worker #0] ML tree search #1, logLikelihood: -159720.671479

[06:10:43 -377016.164815] Initial branch length optimization
[06:10:47 -325415.896873] Model parameter optimization (eps = 10.000000)
[06:11:26 -324107.121187] AUTODETECT spr round 1 (radius: 5)
[06:14:29 -253035.520414] AUTODETECT spr round 2 (radius: 10)
[06:18:06 -207380.173866] AUTODETECT spr round 3 (radius: 15)
[06:22:32 -181043.630970] AUTODETECT spr round 4 (radius: 20)
[06:27:17 -174207.045678] AUTODETECT spr round 5 (radius: 25)
[06:32:21 -172810.884754] SPR radius for FAST iterations: 25 (autodetect)
[06:32:21 -172810.884754] Model parameter optimization (eps = 3.000000)
[06:32:50 -172651.169904] FAST spr round 1 (radius: 25)
[06:40:49 -161376.354499] FAST spr round 2 (radius: 25)
[06:46:41 -160213.104553] FAST spr round 3 (radius: 25)
[06:51:37 -160059.522455] FAST spr round 4 (radius: 25)
[06:55:51 -160029.532800] FAST spr round 5 (radius: 25)
[06:59:25 -160024.265708] FAST spr round 6 (radius: 25)
[07:02:52 -160017.723119] FAST spr round 7 (radius: 25)
[07:06:09 -160010.196936] FAST spr round 8 (radius: 25)
[07:09:09 -160005.880156] FAST spr round 9 (radius: 25)
[07:10:56] [worker #1] ML tree search #2, logLikelihood: -159789.186521
[07:12:02 -160005.880090] Model parameter optimization (eps = 1.000000)
[07:12:15 -160004.501697] SLOW spr round 1 (radius: 5)
[07:13:39] [worker #3] ML tree search #4, logLikelihood: -159749.029735
[07:15:55 -159959.142544] SLOW spr round 2 (radius: 5)
[07:19:37 -159950.957985] SLOW spr round 3 (radius: 5)
[07:23:11 -159950.533785] SLOW spr round 4 (radius: 5)
[07:26:34 -159950.533727] SLOW spr round 5 (radius: 10)
[07:30:24 -159942.837652] SLOW spr round 6 (radius: 5)
[07:34:22 -159939.765551] SLOW spr round 7 (radius: 5)
[07:38:03 -159937.942779] SLOW spr round 8 (radius: 5)
[07:38:12] [worker #4] ML tree search #5, logLikelihood: -159628.959507
[07:41:28 -159937.941215] SLOW spr round 9 (radius: 10)
[07:45:19 -159932.670785] SLOW spr round 10 (radius: 5)
[07:49:16 -159929.114932] SLOW spr round 11 (radius: 5)
[07:52:49 -159929.114864] SLOW spr round 12 (radius: 10)
[07:56:54 -159925.132277] SLOW spr round 13 (radius: 5)
[08:01:00 -159919.578839] SLOW spr round 14 (radius: 5)
[08:04:43 -159919.578527] SLOW spr round 15 (radius: 10)
[08:08:47 -159918.001488] SLOW spr round 16 (radius: 5)
[08:12:47 -159917.985595] SLOW spr round 17 (radius: 10)
[08:17:14 -159917.985593] SLOW spr round 18 (radius: 15)
[08:24:38 -159910.457882] SLOW spr round 19 (radius: 5)
[08:28:52 -159906.471395] SLOW spr round 20 (radius: 5)
[08:32:39 -159906.471288] SLOW spr round 21 (radius: 10)
[08:36:39 -159905.798782] SLOW spr round 22 (radius: 5)
[08:40:31 -159905.798332] SLOW spr round 23 (radius: 10)
[08:44:47 -159905.798314] SLOW spr round 24 (radius: 15)
[08:51:50 -159903.517811] SLOW spr round 25 (radius: 5)
[08:55:47 -159903.517751] SLOW spr round 26 (radius: 10)
[09:00:17 -159903.517751] SLOW spr round 27 (radius: 15)
[09:07:15 -159903.517751] SLOW spr round 28 (radius: 20)
[09:15:55 -159901.078466] SLOW spr round 29 (radius: 5)
[09:20:06 -159896.193143] SLOW spr round 30 (radius: 5)
[09:23:53 -159895.765477] SLOW spr round 31 (radius: 5)
[09:27:25 -159894.652043] SLOW spr round 32 (radius: 5)
[09:30:52 -159894.038066] SLOW spr round 33 (radius: 5)
[09:34:15 -159894.037908] SLOW spr round 34 (radius: 10)
[09:37:58 -159893.250249] SLOW spr round 35 (radius: 5)
[09:41:49 -159893.250193] SLOW spr round 36 (radius: 10)
[09:46:05 -159893.250193] SLOW spr round 37 (radius: 15)
[09:53:04 -159893.250193] SLOW spr round 38 (radius: 20)
[10:01:56 -159891.099738] SLOW spr round 39 (radius: 5)
[10:06:00 -159888.649940] SLOW spr round 40 (radius: 5)
[10:09:40 -159888.228050] SLOW spr round 41 (radius: 5)
[10:13:08 -159888.226263] SLOW spr round 42 (radius: 10)
[10:16:54 -159888.226078] SLOW spr round 43 (radius: 15)
[10:24:05 -159888.226034] SLOW spr round 44 (radius: 20)
[10:32:52 -159888.226034] SLOW spr round 45 (radius: 25)
[10:41:35 -159879.564812] SLOW spr round 46 (radius: 5)
[10:45:48 -159873.210474] SLOW spr round 47 (radius: 5)
[10:49:30 -159873.208775] SLOW spr round 48 (radius: 10)
[10:53:34 -159871.371334] SLOW spr round 49 (radius: 5)
[10:57:20 -159871.371330] SLOW spr round 50 (radius: 10)
[11:01:31 -159871.371330] SLOW spr round 51 (radius: 15)
[11:08:44 -159871.371330] SLOW spr round 52 (radius: 20)
[11:18:03 -159869.987495] SLOW spr round 53 (radius: 5)
[11:22:00] [worker #3] ML tree search #9, logLikelihood: -159762.215456
[11:22:13 -159868.865430] SLOW spr round 54 (radius: 5)
[11:26:03 -159867.433051] SLOW spr round 55 (radius: 5)
[11:26:17] [worker #2] ML tree search #8, logLikelihood: -159709.558041
[11:29:39 -159867.099732] SLOW spr round 56 (radius: 5)
[11:33:08 -159867.099091] SLOW spr round 57 (radius: 10)
[11:36:55 -159867.099064] SLOW spr round 58 (radius: 15)
[11:44:30 -159867.099063] SLOW spr round 59 (radius: 20)
[11:53:29 -159867.099063] SLOW spr round 60 (radius: 25)
[12:01:18] [worker #1] ML tree search #7, logLikelihood: -159712.469360
[12:02:47 -159859.386070] SLOW spr round 61 (radius: 5)
[12:06:54 -159857.606432] SLOW spr round 62 (radius: 5)
[12:10:36 -159857.602145] SLOW spr round 63 (radius: 10)
[12:14:50 -159848.965094] SLOW spr round 64 (radius: 5)
[12:18:44 -159844.140530] SLOW spr round 65 (radius: 5)
[12:22:20 -159844.139852] SLOW spr round 66 (radius: 10)
[12:26:13 -159842.622727] SLOW spr round 67 (radius: 5)
[12:30:05 -159842.622336] SLOW spr round 68 (radius: 10)
[12:34:27 -159842.622327] SLOW spr round 69 (radius: 15)
[12:41:36 -159842.622327] SLOW spr round 70 (radius: 20)
[12:51:11 -159842.622327] SLOW spr round 71 (radius: 25)
[13:00:45 -159842.622327] Model parameter optimization (eps = 0.100000)

[13:00:53] [worker #0] ML tree search #6, logLikelihood: -159842.576788

[13:00:53 -379027.508619] Initial branch length optimization
[13:00:57 -326517.601527] Model parameter optimization (eps = 10.000000)
[13:01:36 -325210.328177] AUTODETECT spr round 1 (radius: 5)
[13:04:33 -256202.754156] AUTODETECT spr round 2 (radius: 10)
[13:07:58 -211253.827452] AUTODETECT spr round 3 (radius: 15)
[13:12:25 -184378.485858] AUTODETECT spr round 4 (radius: 20)
[13:17:44 -174026.402092] AUTODETECT spr round 5 (radius: 25)
[13:23:18 -171080.511499] SPR radius for FAST iterations: 25 (autodetect)
[13:23:18 -171080.511499] Model parameter optimization (eps = 3.000000)
[13:23:48 -170914.306851] FAST spr round 1 (radius: 25)
[13:32:11 -160832.270134] FAST spr round 2 (radius: 25)
[13:37:57 -160173.422381] FAST spr round 3 (radius: 25)
[13:43:02 -160023.842754] FAST spr round 4 (radius: 25)
[13:47:19 -159984.805964] FAST spr round 5 (radius: 25)
[13:50:56 -159974.711129] FAST spr round 6 (radius: 25)
[13:54:15 -159972.990632] FAST spr round 7 (radius: 25)
[13:57:21 -159972.990465] Model parameter optimization (eps = 1.000000)
[13:57:40 -159969.614076] SLOW spr round 1 (radius: 5)
[14:01:27 -159905.320329] SLOW spr round 2 (radius: 5)
[14:05:05 -159884.026499] SLOW spr round 3 (radius: 5)
[14:08:39 -159881.902729] SLOW spr round 4 (radius: 5)
[14:12:07 -159880.295038] SLOW spr round 5 (radius: 5)
[14:15:33 -159880.294957] SLOW spr round 6 (radius: 10)
[14:19:23 -159869.958488] SLOW spr round 7 (radius: 5)
[14:23:27 -159856.398793] SLOW spr round 8 (radius: 5)
[14:27:08 -159856.398471] SLOW spr round 9 (radius: 10)
[14:31:00 -159854.176466] SLOW spr round 10 (radius: 5)
[14:34:55 -159853.218536] SLOW spr round 11 (radius: 5)
[14:38:33 -159852.773597] SLOW spr round 12 (radius: 5)
[14:42:02 -159852.773098] SLOW spr round 13 (radius: 10)
[14:45:44 -159852.773063] SLOW spr round 14 (radius: 15)
[14:53:03 -159852.731290] SLOW spr round 15 (radius: 20)
[14:53:28] [worker #4] ML tree search #10, logLikelihood: -159761.350154
[15:01:55 -159840.299139] SLOW spr round 16 (radius: 5)
[15:06:10 -159827.837803] SLOW spr round 17 (radius: 5)
[15:10:00 -159821.491565] SLOW spr round 18 (radius: 5)
[15:13:33 -159821.445297] SLOW spr round 19 (radius: 10)
[15:17:24 -159807.291021] SLOW spr round 20 (radius: 5)
[15:21:17 -159802.743428] SLOW spr round 21 (radius: 5)
[15:24:52 -159801.810086] SLOW spr round 22 (radius: 5)
[15:28:11 -159801.810056] SLOW spr round 23 (radius: 10)
[15:31:42 -159800.499878] SLOW spr round 24 (radius: 5)
[15:35:25 -159800.499555] SLOW spr round 25 (radius: 10)
[15:39:28 -159800.184917] SLOW spr round 26 (radius: 5)
[15:43:21 -159797.094143] SLOW spr round 27 (radius: 5)
[15:47:00 -159793.417892] SLOW spr round 28 (radius: 5)
[15:50:24 -159793.416398] SLOW spr round 29 (radius: 10)
[15:54:00 -159793.416396] SLOW spr round 30 (radius: 15)
[16:01:18 -159786.028297] SLOW spr round 31 (radius: 5)
[16:05:21 -159778.116746] SLOW spr round 32 (radius: 5)
[16:08:57 -159778.116582] SLOW spr round 33 (radius: 10)
[16:12:45 -159778.116579] SLOW spr round 34 (radius: 15)
[16:19:54 -159778.116579] SLOW spr round 35 (radius: 20)
[16:28:35 -159777.151687] SLOW spr round 36 (radius: 5)
[16:32:31 -159777.120302] SLOW spr round 37 (radius: 10)
[16:37:02 -159777.120163] SLOW spr round 38 (radius: 15)
[16:43:42 -159777.120160] SLOW spr round 39 (radius: 20)
[16:52:24 -159776.903493] SLOW spr round 40 (radius: 5)
[16:56:28 -159776.024781] SLOW spr round 41 (radius: 5)
[17:00:16 -159773.388347] SLOW spr round 42 (radius: 5)
[17:03:43 -159773.386867] SLOW spr round 43 (radius: 10)
[17:07:23 -159773.386810] SLOW spr round 44 (radius: 15)
[17:14:22 -159773.386791] SLOW spr round 45 (radius: 20)
[17:22:56 -159773.203280] SLOW spr round 46 (radius: 5)
[17:26:52 -159773.203191] SLOW spr round 47 (radius: 10)
[17:31:27 -159773.203177] SLOW spr round 48 (radius: 15)
[17:38:00 -159773.203165] SLOW spr round 49 (radius: 20)
[17:46:37 -159773.203153] SLOW spr round 50 (radius: 25)
[17:54:40 -159758.147102] SLOW spr round 51 (radius: 5)
[17:58:55 -159747.598384] SLOW spr round 52 (radius: 5)
[18:02:35 -159747.595517] SLOW spr round 53 (radius: 10)
[18:06:27 -159747.595465] SLOW spr round 54 (radius: 15)
[18:13:10 -159747.595460] SLOW spr round 55 (radius: 20)
[18:22:05 -159746.451556] SLOW spr round 56 (radius: 5)
[18:26:07 -159744.392775] SLOW spr round 57 (radius: 5)
[18:29:43 -159744.019394] SLOW spr round 58 (radius: 5)
[18:33:08 -159744.017779] SLOW spr round 59 (radius: 10)
[18:36:46 -159742.422088] SLOW spr round 60 (radius: 5)
[18:40:33 -159741.142298] SLOW spr round 61 (radius: 5)
[18:44:04 -159740.686330] SLOW spr round 62 (radius: 5)
[18:47:28 -159740.221653] SLOW spr round 63 (radius: 5)
[18:50:46 -159740.221051] SLOW spr round 64 (radius: 10)
[18:52:33] [worker #3] ML tree search #14, logLikelihood: -159761.723995
[18:54:17 -159740.221037] SLOW spr round 65 (radius: 15)
[19:01:28 -159740.221031] SLOW spr round 66 (radius: 20)
[19:10:31 -159738.245758] SLOW spr round 67 (radius: 5)
[19:14:39 -159738.245651] SLOW spr round 68 (radius: 10)
[19:19:15 -159738.245648] SLOW spr round 69 (radius: 15)
[19:26:00 -159737.850576] SLOW spr round 70 (radius: 5)
[19:30:05 -159736.662313] SLOW spr round 71 (radius: 5)
[19:33:43 -159736.606041] SLOW spr round 72 (radius: 10)
[19:35:29] [worker #4] ML tree search #15, logLikelihood: -159704.637503
[19:37:44 -159733.876240] SLOW spr round 73 (radius: 5)
[19:39:26] [worker #1] ML tree search #12, logLikelihood: -159724.102970
[19:41:36 -159731.201869] SLOW spr round 74 (radius: 5)
[19:45:09 -159731.201782] SLOW spr round 75 (radius: 10)
[19:48:54 -159731.201779] SLOW spr round 76 (radius: 15)
[19:56:05 -159730.027240] SLOW spr round 77 (radius: 5)
[20:00:00 -159730.027125] SLOW spr round 78 (radius: 10)
[20:04:26 -159730.027124] SLOW spr round 79 (radius: 15)
[20:11:20 -159730.027123] SLOW spr round 80 (radius: 20)
[20:20:55 -159727.799444] SLOW spr round 81 (radius: 5)
[20:25:09 -159727.388998] SLOW spr round 82 (radius: 5)
[20:28:55 -159727.388584] SLOW spr round 83 (radius: 10)
[20:32:59 -159727.388579] SLOW spr round 84 (radius: 15)
[20:40:16 -159727.388578] SLOW spr round 85 (radius: 20)
[20:49:37 -159726.719249] SLOW spr round 86 (radius: 5)
[20:53:46 -159722.884123] SLOW spr round 87 (radius: 5)
[20:57:28 -159722.883863] SLOW spr round 88 (radius: 10)
[21:01:28 -159722.883862] SLOW spr round 89 (radius: 15)
[21:08:40 -159722.883861] SLOW spr round 90 (radius: 20)
[21:17:58 -159722.883861] SLOW spr round 91 (radius: 25)
[21:26:35 -159722.883861] Model parameter optimization (eps = 0.100000)

[21:26:49] [worker #0] ML tree search #11, logLikelihood: -159722.759103

[21:26:49 -376693.238667] Initial branch length optimization
[21:26:53 -325212.592421] Model parameter optimization (eps = 10.000000)
[21:27:35 -323767.697284] AUTODETECT spr round 1 (radius: 5)
[21:30:32 -257649.086888] AUTODETECT spr round 2 (radius: 10)
[21:34:00 -204707.238606] AUTODETECT spr round 3 (radius: 15)
[21:36:25] [worker #2] ML tree search #13, logLikelihood: -159634.009414
[21:38:21 -180579.139920] AUTODETECT spr round 4 (radius: 20)
[21:43:20 -171573.180062] AUTODETECT spr round 5 (radius: 25)
[21:48:24 -169328.951647] SPR radius for FAST iterations: 25 (autodetect)
[21:48:24 -169328.951647] Model parameter optimization (eps = 3.000000)
[21:48:50 -169166.244367] FAST spr round 1 (radius: 25)
[21:56:39 -160506.018575] FAST spr round 2 (radius: 25)
[22:02:29 -159974.884779] FAST spr round 3 (radius: 25)
[22:07:10 -159891.033032] FAST spr round 4 (radius: 25)
[22:11:10 -159875.457610] FAST spr round 5 (radius: 25)
[22:14:51 -159863.904150] FAST spr round 6 (radius: 25)
[22:18:11 -159860.319509] FAST spr round 7 (radius: 25)
[22:21:15 -159859.929052] FAST spr round 8 (radius: 25)
[22:24:08 -159859.929009] Model parameter optimization (eps = 1.000000)
[22:24:21 -159857.178463] SLOW spr round 1 (radius: 5)
[22:28:04 -159816.646289] SLOW spr round 2 (radius: 5)
[22:31:44 -159805.781589] SLOW spr round 3 (radius: 5)
[22:35:14 -159805.171583] SLOW spr round 4 (radius: 5)
[22:38:42 -159805.171390] SLOW spr round 5 (radius: 10)
[22:42:28 -159802.088520] SLOW spr round 6 (radius: 5)
[22:46:20 -159801.093760] SLOW spr round 7 (radius: 5)
[22:49:57 -159801.093626] SLOW spr round 8 (radius: 10)
[22:53:52 -159801.093617] SLOW spr round 9 (radius: 15)
[23:00:54 -159798.958988] SLOW spr round 10 (radius: 5)
[23:04:56 -159797.618802] SLOW spr round 11 (radius: 5)
[23:08:36 -159797.617658] SLOW spr round 12 (radius: 10)
[23:12:35 -159791.300377] SLOW spr round 13 (radius: 5)
[23:16:25 -159789.576896] SLOW spr round 14 (radius: 5)
[23:20:01 -159789.576874] SLOW spr round 15 (radius: 10)
[23:23:54 -159789.576871] SLOW spr round 16 (radius: 15)
[23:31:02 -159783.024294] SLOW spr round 17 (radius: 5)
[23:35:10 -159780.809404] SLOW spr round 18 (radius: 5)
[23:38:53 -159780.809030] SLOW spr round 19 (radius: 10)
[23:42:57 -159780.809020] SLOW spr round 20 (radius: 15)
[23:49:58 -159780.355095] SLOW spr round 21 (radius: 5)
[23:52:03] [worker #3] ML tree search #19, logLikelihood: -159793.447000
[23:54:06 -159780.354737] SLOW spr round 22 (radius: 10)
[23:58:52 -159776.148119] SLOW spr round 23 (radius: 5)
[24:02:46 -159775.563702] SLOW spr round 24 (radius: 5)
[24:06:22 -159775.563600] SLOW spr round 25 (radius: 10)
[24:10:10 -159775.563593] SLOW spr round 26 (radius: 15)
[24:17:05 -159775.510780] SLOW spr round 27 (radius: 20)
[24:25:29 -159771.508749] SLOW spr round 28 (radius: 5)
[24:29:31 -159770.802312] SLOW spr round 29 (radius: 5)
[24:33:11 -159770.802298] SLOW spr round 30 (radius: 10)
[24:37:15 -159770.802297] SLOW spr round 31 (radius: 15)
[24:44:06 -159770.625606] SLOW spr round 32 (radius: 5)
[24:48:11 -159770.617975] SLOW spr round 33 (radius: 10)
[24:52:53 -159770.616124] SLOW spr round 34 (radius: 15)
[24:59:39 -159770.615643] SLOW spr round 35 (radius: 20)
[25:08:13 -159768.961725] SLOW spr round 36 (radius: 5)
[25:12:21 -159767.196911] SLOW spr round 37 (radius: 5)
[25:16:07 -159763.120719] SLOW spr round 38 (radius: 5)
[25:19:39 -159762.399026] SLOW spr round 39 (radius: 5)
[25:23:03 -159762.398624] SLOW spr round 40 (radius: 10)
[25:26:43 -159762.398607] SLOW spr round 41 (radius: 15)
[25:33:50 -159754.466845] SLOW spr round 42 (radius: 5)
[25:37:50 -159750.907294] SLOW spr round 43 (radius: 5)
[25:41:26 -159750.906572] SLOW spr round 44 (radius: 10)
[25:45:17 -159750.325044] SLOW spr round 45 (radius: 5)
[25:49:08 -159750.324987] SLOW spr round 46 (radius: 10)
[25:53:20 -159750.324980] SLOW spr round 47 (radius: 15)
[26:00:11 -159748.191614] SLOW spr round 48 (radius: 5)
[26:04:07 -159748.190004] SLOW spr round 49 (radius: 10)
[26:08:37 -159748.189679] SLOW spr round 50 (radius: 15)
[26:15:17 -159747.894128] SLOW spr round 51 (radius: 5)
[26:19:14 -159747.893055] SLOW spr round 52 (radius: 10)
[26:23:43 -159747.893032] SLOW spr round 53 (radius: 15)
[26:30:31 -159747.576078] SLOW spr round 54 (radius: 5)
[26:34:42 -159745.251546] SLOW spr round 55 (radius: 5)
[26:38:25 -159744.820802] SLOW spr round 56 (radius: 5)
[26:41:51 -159744.820529] SLOW spr round 57 (radius: 10)
[26:45:32 -159744.820419] SLOW spr round 58 (radius: 15)
[26:52:33 -159744.506162] SLOW spr round 59 (radius: 5)
[26:56:31 -159744.506013] SLOW spr round 60 (radius: 10)
[27:00:58 -159744.506008] SLOW spr round 61 (radius: 15)
[27:07:40 -159744.477325] SLOW spr round 62 (radius: 20)
[27:16:13 -159743.599273] SLOW spr round 63 (radius: 5)
[27:20:17 -159742.396725] SLOW spr round 64 (radius: 5)
[27:24:05 -159741.093577] SLOW spr round 65 (radius: 5)
[27:27:37 -159741.093504] SLOW spr round 66 (radius: 10)
[27:31:26 -159741.093501] SLOW spr round 67 (radius: 15)
[27:33:07] [worker #4] ML tree search #20, logLikelihood: -159705.589699
[27:38:41 -159739.862109] SLOW spr round 68 (radius: 5)
[27:38:41] [worker #2] ML tree search #18, logLikelihood: -159824.573805
[27:42:43 -159737.621003] SLOW spr round 69 (radius: 5)
[27:44:40] [worker #1] ML tree search #17, logLikelihood: -159788.301525
[27:46:20 -159736.977323] SLOW spr round 70 (radius: 5)
[27:49:44 -159736.976412] SLOW spr round 71 (radius: 10)
[27:53:26 -159734.970449] SLOW spr round 72 (radius: 5)
[27:57:13 -159734.970432] SLOW spr round 73 (radius: 10)
[28:01:23 -159733.879186] SLOW spr round 74 (radius: 5)
[28:05:07 -159733.759591] SLOW spr round 75 (radius: 5)
[28:08:35 -159733.759588] SLOW spr round 76 (radius: 10)
[28:12:20 -159733.759588] SLOW spr round 77 (radius: 15)
[28:19:26 -159733.053081] SLOW spr round 78 (radius: 5)
[28:23:32 -159732.410519] SLOW spr round 79 (radius: 5)
[28:27:17 -159732.410499] SLOW spr round 80 (radius: 10)
[28:31:22 -159730.347765] SLOW spr round 81 (radius: 5)
[28:35:19 -159728.004969] SLOW spr round 82 (radius: 5)
[28:38:53 -159727.527657] SLOW spr round 83 (radius: 5)
[28:42:16 -159727.527625] SLOW spr round 84 (radius: 10)
[28:45:55 -159724.050950] SLOW spr round 85 (radius: 5)
[28:49:48 -159722.570214] SLOW spr round 86 (radius: 5)
[28:53:18 -159722.570207] SLOW spr round 87 (radius: 10)
[28:57:05 -159721.859672] SLOW spr round 88 (radius: 5)
[29:00:52 -159721.859521] SLOW spr round 89 (radius: 10)
[29:05:07 -159721.859511] SLOW spr round 90 (radius: 15)
[29:12:05 -159721.765453] SLOW spr round 91 (radius: 20)
[29:20:45 -159721.054239] SLOW spr round 92 (radius: 5)
[29:24:48 -159719.790454] SLOW spr round 93 (radius: 5)
[29:28:25 -159719.787863] SLOW spr round 94 (radius: 10)
[29:32:17 -159719.787593] SLOW spr round 95 (radius: 15)
[29:39:00 -159719.787562] SLOW spr round 96 (radius: 20)
[29:47:37 -159719.787558] SLOW spr round 97 (radius: 25)
[29:56:01 -159719.532286] SLOW spr round 98 (radius: 5)
[30:00:09 -159719.532005] SLOW spr round 99 (radius: 10)
[30:05:12 -159719.532003] SLOW spr round 100 (radius: 15)
[30:11:47 -159719.532003] SLOW spr round 101 (radius: 20)
[30:20:28 -159719.532003] SLOW spr round 102 (radius: 25)
[30:28:51 -159719.532002] Model parameter optimization (eps = 0.100000)

[30:29:04] [worker #0] ML tree search #16, logLikelihood: -159719.320223


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.230090,0.267901) (0.110588,0.558810) (0.531738,1.076544) (0.127584,2.383703) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -159628.959507

AIC score: 323259.919015 / AICc score: 8335263.919015 / BIC score: 330182.549629
Free parameters (model + branch lengths): 2001

WARNING: Number of free parameters (K=2001) is larger than alignment size (n=235).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13127/3_mltree/Q13127.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13127/3_mltree/Q13127.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13127/3_mltree/Q13127.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13127/3_mltree/Q13127.raxml.log

Analysis started: 04-Jul-2021 07:26:11 / finished: 05-Jul-2021 13:55:16

Elapsed time: 109744.742 seconds

Consumed energy: 8133.797 Wh (= 41 km in an electric car, or 203 km with an e-scooter!)