RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 03-Jul-2021 15:53:19 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13064/2_msa/Q13064_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13064/3_mltree/Q13064 --seed 2 --threads 2 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13064/2_msa/Q13064_trimmed_msa.fasta [00:00:00] Loaded alignment with 680 taxa and 96 sites WARNING: Sequences tr_V7BUW9_V7BUW9_PHAVU_3885 and tr_A0A151QR68_A0A151QR68_CAJCA_3821 are exactly identical! WARNING: Sequences tr_B4QK57_B4QK57_DROSI_7240 and tr_B4IAR2_B4IAR2_DROSE_7238 are exactly identical! WARNING: Sequences tr_E2A422_E2A422_CAMFO_104421 and tr_A0A158P097_A0A158P097_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2A422_E2A422_CAMFO_104421 and tr_F4WL57_F4WL57_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2A422_E2A422_CAMFO_104421 and tr_A0A026W7N0_A0A026W7N0_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2A422_E2A422_CAMFO_104421 and tr_A0A151WM33_A0A151WM33_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2A422_E2A422_CAMFO_104421 and tr_A0A195EKJ8_A0A195EKJ8_9HYME_471704 are exactly identical! WARNING: Sequences tr_E2A422_E2A422_CAMFO_104421 and tr_A0A195BNU8_A0A195BNU8_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2A422_E2A422_CAMFO_104421 and tr_A0A195FC97_A0A195FC97_9HYME_34720 are exactly identical! WARNING: Sequences tr_E2A422_E2A422_CAMFO_104421 and tr_A0A195CI88_A0A195CI88_9HYME_456900 are exactly identical! WARNING: Sequences tr_Q9PTI4_Q9PTI4_CHICK_9031 and tr_G1NKI9_G1NKI9_MELGA_9103 are exactly identical! WARNING: Sequences tr_Q9PTI4_Q9PTI4_CHICK_9031 and tr_F6QPR3_F6QPR3_MONDO_13616 are exactly identical! WARNING: Sequences tr_Q9PTI4_Q9PTI4_CHICK_9031 and tr_K7FMI9_K7FMI9_PELSI_13735 are exactly identical! WARNING: Sequences tr_Q9PTI4_Q9PTI4_CHICK_9031 and tr_G3WRG2_G3WRG2_SARHA_9305 are exactly identical! WARNING: Sequences tr_Q9PTI4_Q9PTI4_CHICK_9031 and tr_R0JR52_R0JR52_ANAPL_8839 are exactly identical! WARNING: Sequences tr_Q9PTI4_Q9PTI4_CHICK_9031 and tr_A0A151NI79_A0A151NI79_ALLMI_8496 are exactly identical! WARNING: Sequences tr_Q9PTI4_Q9PTI4_CHICK_9031 and tr_A0A1U8CWJ8_A0A1U8CWJ8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_Q9PTI4_Q9PTI4_CHICK_9031 and tr_A0A226NPK7_A0A226NPK7_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q9ERV1_MKRN2_MOUSE_10090 and tr_Q5XI23_Q5XI23_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_M3XWH2_M3XWH2_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_G1P652_G1P652_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_E2RRA5_E2RRA5_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_F6RZ36_F6RZ36_HORSE_9796 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_W5PU93_W5PU93_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_A0A0G2QC40_A0A0G2QC40_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_H0X1G4_H0X1G4_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_G5B567_G5B567_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_A0A287ATB1_A0A287ATB1_PIG_9823 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_D2GYM0_D2GYM0_AILME_9646 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_F1MF12_F1MF12_BOVIN_9913 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_L5KPU9_L5KPU9_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_A0A091DHY9_A0A091DHY9_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_A0A1S3AAW4_A0A1S3AAW4_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_A0A1U7T8H6_A0A1U7T8H6_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_A0A2U3WXD4_A0A2U3WXD4_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_A0A2U3Z916_A0A2U3Z916_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_A0A2Y9DXV6_A0A2Y9DXV6_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_A0A2Y9JYK8_A0A2Y9JYK8_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_A0A2Y9NR57_A0A2Y9NR57_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_A0A2Y9TCW5_A0A2Y9TCW5_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q9QXP6_MKRN1_MOUSE_10090 and tr_A0A384CM99_A0A384CM99_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YT65_M3YT65_MUSPF_9669 and tr_G1M1F1_G1M1F1_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YT65_M3YT65_MUSPF_9669 and tr_A0A2U3XDF5_A0A2U3XDF5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YT65_M3YT65_MUSPF_9669 and tr_A0A384BUE5_A0A384BUE5_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A2I3HDT5_A0A2I3HDT5_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_G1PXC6_G1PXC6_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A2I2YER6_A0A2I2YER6_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_H2P9A3_H2P9A3_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_G1U3K8_G1U3K8_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_E2REH2_E2REH2_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A2I3TLP1_A0A2I3TLP1_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_I3MFM8_I3MFM8_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and sp_Q9H000_MKRN2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_F6YF04_F6YF04_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_G3T7T6_G3T7T6_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A2R8N1J8_A0A2R8N1J8_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_I3LLV1_I3LLV1_PIG_9823 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_G1LDL6_G1LDL6_AILME_9646 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_G7NYH0_G7NYH0_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_M3W8R2_M3W8R2_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A096MQN2_A0A096MQN2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A0D9RBL2_A0A0D9RBL2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A1U7U136_A0A1U7U136_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A2K5NJS1_A0A2K5NJS1_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A2K6BRM0_A0A2K6BRM0_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A2K5XEP0_A0A2K5XEP0_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A2R9BJC4_A0A2R9BJC4_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A2U4C3W1_A0A2U4C3W1_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A2U3VL73_A0A2U3VL73_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A2Y9FX74_A0A2Y9FX74_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A2Y9J056_A0A2Y9J056_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A2Y9M9V2_A0A2Y9M9V2_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A2Y9FLG2_A0A2Y9FLG2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3Z0G3_M3Z0G3_MUSPF_9669 and tr_A0A384CNQ3_A0A384CNQ3_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A194YIW9_A0A194YIW9_SORBI_4558 and tr_K3XXQ2_K3XXQ2_SETIT_4555 are exactly identical! WARNING: Sequences tr_B4J3E8_B4J3E8_DROGR_7222 and tr_B4MXR4_B4MXR4_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4J3E8_B4J3E8_DROGR_7222 and tr_B4LDJ9_B4LDJ9_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4J3E8_B4J3E8_DROGR_7222 and tr_A0A0M4EC69_A0A0M4EC69_DROBS_30019 are exactly identical! WARNING: Sequences tr_G1QN97_G1QN97_NOMLE_61853 and tr_A0A2I2Y497_A0A2I2Y497_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QN97_G1QN97_NOMLE_61853 and tr_H2PNP7_H2PNP7_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1QN97_G1QN97_NOMLE_61853 and tr_H2QVH8_H2QVH8_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QN97_G1QN97_NOMLE_61853 and sp_Q9UHC7_MKRN1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QN97_G1QN97_NOMLE_61853 and tr_F7CXP2_F7CXP2_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QN97_G1QN97_NOMLE_61853 and tr_U3DKK9_U3DKK9_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QN97_G1QN97_NOMLE_61853 and tr_A0A096MYF9_A0A096MYF9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QN97_G1QN97_NOMLE_61853 and tr_A0A0D9R7B4_A0A0D9R7B4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QN97_G1QN97_NOMLE_61853 and tr_A0A2K5N8C7_A0A2K5N8C7_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QN97_G1QN97_NOMLE_61853 and tr_A0A2K6DDW5_A0A2K6DDW5_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QN97_G1QN97_NOMLE_61853 and tr_A0A2K5YQK2_A0A2K5YQK2_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QN97_G1QN97_NOMLE_61853 and tr_A0A2R9CA62_A0A2R9CA62_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3HVN2_G3HVN2_CRIGR_10029 and tr_A0A1U7QEV7_A0A1U7QEV7_MESAU_10036 are exactly identical! WARNING: Sequences tr_A0A2I2Y4E3_A0A2I2Y4E3_GORGO_9595 and tr_A0A2I3RM07_A0A2I3RM07_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2Y4E3_A0A2I2Y4E3_GORGO_9595 and tr_A0A2R9AT40_A0A2R9AT40_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1N0J4_G1N0J4_MELGA_9103 and tr_U3J5B8_U3J5B8_ANAPL_8839 are exactly identical! WARNING: Sequences tr_G1N0J4_G1N0J4_MELGA_9103 and tr_A0A087RH48_A0A087RH48_APTFO_9233 are exactly identical! WARNING: Sequences tr_G1N0J4_G1N0J4_MELGA_9103 and tr_A0A091WJ55_A0A091WJ55_OPIHO_30419 are exactly identical! WARNING: Sequences tr_G1N0J4_G1N0J4_MELGA_9103 and tr_A0A0A0ATI9_A0A0A0ATI9_CHAVO_50402 are exactly identical! WARNING: Sequences tr_G1N0J4_G1N0J4_MELGA_9103 and tr_A0A2I0LTX7_A0A2I0LTX7_COLLI_8932 are exactly identical! WARNING: Sequences tr_G1N0J4_G1N0J4_MELGA_9103 and tr_A0A1V4K330_A0A1V4K330_PATFA_372326 are exactly identical! WARNING: Sequences tr_G1N0J4_G1N0J4_MELGA_9103 and tr_A0A226NDG1_A0A226NDG1_CALSU_9009 are exactly identical! WARNING: Sequences tr_G1N0J4_G1N0J4_MELGA_9103 and tr_A0A226NQQ3_A0A226NQQ3_COLVI_9014 are exactly identical! WARNING: Sequences tr_B8P0N9_B8P0N9_POSPM_561896 and tr_A0A1X6N6N0_A0A1X6N6N0_9APHY_670580 are exactly identical! WARNING: Sequences tr_G1TPC4_G1TPC4_RABIT_9986 and tr_G1TXY2_G1TXY2_RABIT_9986 are exactly identical! WARNING: Sequences tr_Q2LYK7_Q2LYK7_DROPS_46245 and tr_B4HBT9_B4HBT9_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A2I3REM9_A0A2I3REM9_PANTR_9598 and tr_A0A2R9CK41_A0A2R9CK41_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3SG79_A0A2I3SG79_PANTR_9598 and tr_A0A2R9C8Z0_A0A2R9C8Z0_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3TCP4_A0A2I3TCP4_PANTR_9598 and tr_A0A2R8ZU72_A0A2R8ZU72_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3ZSB3_M3ZSB3_XIPMA_8083 and tr_A0A087XLK1_A0A087XLK1_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088AUS7_A0A088AUS7_APIME_7460 and tr_A0A2A3E617_A0A2A3E617_APICC_94128 are exactly identical! WARNING: Sequences tr_H0UVP6_H0UVP6_CAVPO_10141 and tr_G5BJW3_G5BJW3_HETGA_10181 are exactly identical! WARNING: Sequences tr_H0UVP6_H0UVP6_CAVPO_10141 and tr_A0A091D8Q2_A0A091D8Q2_FUKDA_885580 are exactly identical! WARNING: Sequences sp_E0X9N4_C3H69_ARATH_3702 and tr_D7LTS2_D7LTS2_ARALL_81972 are exactly identical! WARNING: Sequences tr_A0A0K0JPW9_A0A0K0JPW9_BRUMA_6279 and tr_A0A0N4SY02_A0A0N4SY02_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A1D5Q5U9_A0A1D5Q5U9_MACMU_9544 and tr_A0A2I3LY92_A0A2I3LY92_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5Q5U9_A0A1D5Q5U9_MACMU_9544 and tr_A0A2K5MAF3_A0A2K5MAF3_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A1D5Q5U9_A0A1D5Q5U9_MACMU_9544 and tr_A0A2K6BBJ4_A0A2K6BBJ4_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5Q5U9_A0A1D5Q5U9_MACMU_9544 and tr_A0A2K5XEE3_A0A2K5XEE3_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6SJ36_F6SJ36_MACMU_9544 and tr_G7Q2I9_G7Q2I9_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6SJ36_F6SJ36_MACMU_9544 and tr_A0A096N858_A0A096N858_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6SJ36_F6SJ36_MACMU_9544 and tr_A0A2K5MIF2_A0A2K5MIF2_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6SJ36_F6SJ36_MACMU_9544 and tr_A0A2K6D7D4_A0A2K6D7D4_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6SJ36_F6SJ36_MACMU_9544 and tr_A0A2K6A4T2_A0A2K6A4T2_MANLE_9568 are exactly identical! WARNING: Sequences tr_H3C5V3_H3C5V3_TETNG_99883 and sp_Q4SRI6_MKRN1_TETNG_99883 are exactly identical! WARNING: Sequences tr_G3WBT1_G3WBT1_SARHA_9305 and tr_A0A3Q0GKR1_A0A3Q0GKR1_ALLSI_38654 are exactly identical! WARNING: Sequences tr_H0Z0R7_H0Z0R7_TAEGU_59729 and tr_U3JB63_U3JB63_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0Z0R7_H0Z0R7_TAEGU_59729 and tr_A0A093SQ47_A0A093SQ47_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0Z0R7_H0Z0R7_TAEGU_59729 and tr_A0A218UP89_A0A218UP89_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZN53_H0ZN53_TAEGU_59729 and tr_U3JM72_U3JM72_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZN53_H0ZN53_TAEGU_59729 and tr_A0A091F6C0_A0A091F6C0_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZN53_H0ZN53_TAEGU_59729 and tr_A0A091IVQ7_A0A091IVQ7_EGRGA_188379 are exactly identical! WARNING: Sequences tr_H0ZN53_H0ZN53_TAEGU_59729 and tr_A0A093SCI3_A0A093SCI3_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZN53_H0ZN53_TAEGU_59729 and tr_A0A091V302_A0A091V302_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0ZN53_H0ZN53_TAEGU_59729 and tr_A0A087RJI5_A0A087RJI5_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0ZN53_H0ZN53_TAEGU_59729 and tr_A0A093JZV6_A0A093JZV6_STRCA_441894 are exactly identical! WARNING: Sequences tr_H0ZN53_H0ZN53_TAEGU_59729 and tr_A0A091VJ21_A0A091VJ21_OPIHO_30419 are exactly identical! WARNING: Sequences tr_H0ZN53_H0ZN53_TAEGU_59729 and tr_A0A099Z5G5_A0A099Z5G5_TINGU_94827 are exactly identical! WARNING: Sequences tr_H0ZN53_H0ZN53_TAEGU_59729 and tr_A0A091G1Z3_A0A091G1Z3_9AVES_55661 are exactly identical! WARNING: Sequences tr_H0ZN53_H0ZN53_TAEGU_59729 and tr_A0A0A0AMJ2_A0A0A0AMJ2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_H0ZN53_H0ZN53_TAEGU_59729 and tr_A0A2I0MKQ8_A0A2I0MKQ8_COLLI_8932 are exactly identical! WARNING: Sequences tr_H0ZN53_H0ZN53_TAEGU_59729 and tr_A0A093GJ49_A0A093GJ49_DRYPU_118200 are exactly identical! WARNING: Sequences tr_H0ZN53_H0ZN53_TAEGU_59729 and tr_A0A091HZM1_A0A091HZM1_CALAN_9244 are exactly identical! WARNING: Sequences tr_H0ZN53_H0ZN53_TAEGU_59729 and tr_A0A1V4K801_A0A1V4K801_PATFA_372326 are exactly identical! WARNING: Sequences tr_H0ZN53_H0ZN53_TAEGU_59729 and tr_A0A218V0N0_A0A218V0N0_9PASE_299123 are exactly identical! WARNING: Sequences tr_A8XIX6_A8XIX6_CAEBR_6238 and tr_A0A2G5UCV8_A0A2G5UCV8_9PELO_1611254 are exactly identical! WARNING: Sequences tr_D7L749_D7L749_ARALL_81972 and tr_R0G650_R0G650_9BRAS_81985 are exactly identical! WARNING: Sequences tr_B3RNS5_B3RNS5_TRIAD_10228 and tr_A0A369S9E2_A0A369S9E2_9METZ_287889 are exactly identical! WARNING: Sequences tr_G7PAF8_G7PAF8_MACFA_9541 and tr_A0A0D9SBZ8_A0A0D9SBZ8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M4FBE9_M4FBE9_BRARP_51351 and tr_A0A078FHG6_A0A078FHG6_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4FBE9_M4FBE9_BRARP_51351 and tr_A0A078GR89_A0A078GR89_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4FBE9_M4FBE9_BRARP_51351 and tr_A0A0D3DLB3_A0A0D3DLB3_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M4FG23_M4FG23_BRARP_51351 and tr_A0A078GAT2_A0A078GAT2_BRANA_3708 are exactly identical! WARNING: Sequences tr_R7TQD1_R7TQD1_CAPTE_283909 and tr_R7UQ28_R7UQ28_CAPTE_283909 are exactly identical! WARNING: Sequences tr_R7UBJ7_R7UBJ7_CAPTE_283909 and tr_R7UJ99_R7UJ99_CAPTE_283909 are exactly identical! WARNING: Sequences tr_R7UBJ7_R7UBJ7_CAPTE_283909 and tr_R7UPB8_R7UPB8_CAPTE_283909 are exactly identical! WARNING: Sequences tr_V2XB37_V2XB37_MONRO_1381753 and tr_A0A0W0FZE7_A0A0W0FZE7_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W2QZ48_W2QZ48_PHYPN_761204 and tr_A0A0W8CSF3_A0A0W8CSF3_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2QZ48_W2QZ48_PHYPN_761204 and tr_W2KF09_W2KF09_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A015JY90_A0A015JY90_9GLOM_1432141 and tr_A0A2I1EXN5_A0A2I1EXN5_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015JY90_A0A015JY90_9GLOM_1432141 and tr_A0A2H5THM9_A0A2H5THM9_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A015MEU3_A0A015MEU3_9GLOM_1432141 and tr_A0A2I1FU76_A0A2I1FU76_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015MEU3_A0A015MEU3_9GLOM_1432141 and tr_A0A2H5TLC9_A0A2H5TLC9_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A067GXH1_A0A067GXH1_CITSI_2711 and tr_V4VIC1_V4VIC1_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067GXH1_A0A067GXH1_CITSI_2711 and tr_A0A2H5N9V0_A0A2H5N9V0_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A078F3I5_A0A078F3I5_BRANA_3708 and tr_A0A0D3BAA3_A0A0D3BAA3_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A0D2MT67_A0A0D2MT67_GOSRA_29730 and tr_A0A1U8KQE5_A0A1U8KQE5_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2MT67_A0A0D2MT67_GOSRA_29730 and tr_A0A1U8LD18_A0A1U8LD18_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0D2QZ48_A0A0D2QZ48_GOSRA_29730 and tr_A0A1U8J012_A0A1U8J012_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0L9UKG5_A0A0L9UKG5_PHAAN_3914 and tr_A0A1S3U7F8_A0A1S3U7F8_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A0V0VES5_A0A0V0VES5_9BILA_181606 and tr_A0A0V0ZTR0_A0A0V0ZTR0_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0VES5_A0A0V0VES5_9BILA_181606 and tr_A0A0V0TTA7_A0A0V0TTA7_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1M8A5_A0A0V1M8A5_9BILA_268474 and tr_A0A0V1H7Q1_A0A0V1H7Q1_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3P8L6_A0A1S3P8L6_SALSA_8030 and tr_C0HAI0_C0HAI0_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A314KJM1_A0A314KJM1_NICAT_49451 and tr_A0A1U7WZZ1_A0A1U7WZZ1_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A2H3B347_A0A2H3B347_9AGAR_1076256 and tr_A0A284R4E4_A0A284R4E4_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A2D0PHX3_A0A2D0PHX3_ICTPU_7998 and tr_A0A2D0PLZ1_A0A2D0PLZ1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PHX3_A0A2D0PHX3_ICTPU_7998 and tr_W5ULW4_W5ULW4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0R0S0_A0A2D0R0S0_ICTPU_7998 and tr_A0A2D0R126_A0A2D0R126_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0R0S0_A0A2D0R0S0_ICTPU_7998 and tr_A0A2D0R2H6_A0A2D0R2H6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T5E4_A0A2D0T5E4_ICTPU_7998 and tr_A0A2D0T5L6_A0A2D0T5L6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T5E4_A0A2D0T5E4_ICTPU_7998 and tr_A0A2D0T667_A0A2D0T667_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2G2YKL8_A0A2G2YKL8_CAPAN_4072 and tr_A0A2G3BEF8_A0A2G3BEF8_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2J6L6Z0_A0A2J6L6Z0_LACSA_4236 and tr_A0A103Y183_A0A103Y183_CYNCS_59895 are exactly identical! WARNING: Sequences tr_A0A2J6L6Z0_A0A2J6L6Z0_LACSA_4236 and tr_A0A2U1KVQ8_A0A2U1KVQ8_ARTAN_35608 are exactly identical! WARNING: Sequences tr_A0A2U4C7V8_A0A2U4C7V8_TURTR_9739 and tr_A0A2Y9MIZ0_A0A2Y9MIZ0_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4C7V8_A0A2U4C7V8_TURTR_9739 and tr_A0A2Y9FDZ8_A0A2Y9FDZ8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3WAY8_A0A2U3WAY8_ODORO_9708 and tr_A0A2Y9KC75_A0A2Y9KC75_ENHLU_391180 are exactly identical! WARNING: Duplicate sequences found: 186 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13064/3_mltree/Q13064.raxml.reduced.phy Alignment comprises 1 partitions and 96 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 96 / 96 Gaps: 4.57 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13064/3_mltree/Q13064.raxml.rba Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 680 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 96 / 7680 [00:00:00] Data distribution: max. searches per worker: 10 Starting ML tree search with 20 distinct starting trees [00:00:00 -92393.486956] Initial branch length optimization [00:00:01 -74110.426184] Model parameter optimization (eps = 10.000000) [00:00:15 -74070.968989] AUTODETECT spr round 1 (radius: 5) [00:00:59 -54969.353359] AUTODETECT spr round 2 (radius: 10) [00:01:49 -44268.154107] AUTODETECT spr round 3 (radius: 15) [00:02:47 -39303.374904] AUTODETECT spr round 4 (radius: 20) [00:03:52 -34330.675925] AUTODETECT spr round 5 (radius: 25) [00:04:58 -32300.179890] SPR radius for FAST iterations: 25 (autodetect) [00:04:58 -32300.179890] Model parameter optimization (eps = 3.000000) [00:05:09 -32244.323862] FAST spr round 1 (radius: 25) [00:06:03 -27454.627034] FAST spr round 2 (radius: 25) [00:06:45 -26789.667941] FAST spr round 3 (radius: 25) [00:07:24 -26711.909738] FAST spr round 4 (radius: 25) [00:08:01 -26704.860407] FAST spr round 5 (radius: 25) [00:08:37 -26704.858530] Model parameter optimization (eps = 1.000000) [00:08:46 -26695.256654] SLOW spr round 1 (radius: 5) [00:09:30 -26690.828464] SLOW spr round 2 (radius: 5) [00:10:12 -26687.395918] SLOW spr round 3 (radius: 5) [00:10:53 -26687.394508] SLOW spr round 4 (radius: 10) [00:11:37 -26687.394377] SLOW spr round 5 (radius: 15) [00:12:38 -26687.092172] SLOW spr round 6 (radius: 5) [00:13:32 -26686.973129] SLOW spr round 7 (radius: 5) [00:14:20 -26686.973129] SLOW spr round 8 (radius: 10) [00:15:06 -26686.973129] SLOW spr round 9 (radius: 15) [00:16:05 -26686.973129] SLOW spr round 10 (radius: 20) [00:17:16 -26686.467453] SLOW spr round 11 (radius: 5) [00:18:11 -26686.467453] SLOW spr round 12 (radius: 10) [00:19:02 -26686.467453] SLOW spr round 13 (radius: 15) [00:20:00 -26686.467453] SLOW spr round 14 (radius: 20) [00:21:11 -26686.467453] SLOW spr round 15 (radius: 25) [00:22:34 -26682.118624] SLOW spr round 16 (radius: 5) [00:23:30 -26682.118622] SLOW spr round 17 (radius: 10) [00:24:21 -26682.118622] SLOW spr round 18 (radius: 15) [00:25:19 -26682.118622] SLOW spr round 19 (radius: 20) [00:26:30 -26682.118622] SLOW spr round 20 (radius: 25) [00:27:52 -26682.118622] Model parameter optimization (eps = 0.100000) [00:27:56] [worker #0] ML tree search #1, logLikelihood: -26682.093535 [00:27:56 -92248.670894] Initial branch length optimization [00:27:57 -73951.542212] Model parameter optimization (eps = 10.000000) [00:28:10 -73926.226688] AUTODETECT spr round 1 (radius: 5) [00:28:54 -54536.021821] AUTODETECT spr round 2 (radius: 10) [00:29:45 -43244.559143] AUTODETECT spr round 3 (radius: 15) [00:30:51 -37418.026442] AUTODETECT spr round 4 (radius: 20) [00:31:53 -34964.935939] AUTODETECT spr round 5 (radius: 25) [00:32:41] [worker #1] ML tree search #2, logLikelihood: -26561.575242 [00:32:55 -32522.053131] SPR radius for FAST iterations: 25 (autodetect) [00:32:55 -32522.053131] Model parameter optimization (eps = 3.000000) [00:33:05 -32486.547764] FAST spr round 1 (radius: 25) [00:34:00 -27071.567320] FAST spr round 2 (radius: 25) [00:34:45 -26629.137985] FAST spr round 3 (radius: 25) [00:35:27 -26600.813141] FAST spr round 4 (radius: 25) [00:36:04 -26600.247895] FAST spr round 5 (radius: 25) [00:36:40 -26598.351101] FAST spr round 6 (radius: 25) [00:37:15 -26595.907795] FAST spr round 7 (radius: 25) [00:37:49 -26595.906952] Model parameter optimization (eps = 1.000000) [00:38:00 -26591.375110] SLOW spr round 1 (radius: 5) [00:38:43 -26585.071292] SLOW spr round 2 (radius: 5) [00:39:26 -26583.160565] SLOW spr round 3 (radius: 5) [00:40:08 -26583.159601] SLOW spr round 4 (radius: 10) [00:40:52 -26582.679899] SLOW spr round 5 (radius: 5) [00:41:45 -26582.676727] SLOW spr round 6 (radius: 10) [00:42:33 -26582.676727] SLOW spr round 7 (radius: 15) [00:43:33 -26581.723888] SLOW spr round 8 (radius: 5) [00:44:27 -26581.649330] SLOW spr round 9 (radius: 10) [00:45:18 -26581.649274] SLOW spr round 10 (radius: 15) [00:46:17 -26581.649272] SLOW spr round 11 (radius: 20) [00:47:32 -26581.649271] SLOW spr round 12 (radius: 25) [00:48:56 -26576.630437] SLOW spr round 13 (radius: 5) [00:49:53 -26576.186562] SLOW spr round 14 (radius: 5) [00:50:42 -26576.184310] SLOW spr round 15 (radius: 10) [00:51:29 -26576.182581] SLOW spr round 16 (radius: 15) [00:52:30 -26576.181241] SLOW spr round 17 (radius: 20) [00:53:48 -26576.180200] SLOW spr round 18 (radius: 25) [00:55:17 -26576.179388] Model parameter optimization (eps = 0.100000) [00:55:19] [worker #0] ML tree search #3, logLikelihood: -26576.144832 [00:55:19 -91737.263313] Initial branch length optimization [00:55:20 -73437.028302] Model parameter optimization (eps = 10.000000) [00:55:31 -73410.401264] AUTODETECT spr round 1 (radius: 5) [00:56:15 -54171.650422] AUTODETECT spr round 2 (radius: 10) [00:57:05 -43292.403840] AUTODETECT spr round 3 (radius: 15) [00:58:07 -37320.996093] AUTODETECT spr round 4 (radius: 20) [00:59:22 -32667.507763] AUTODETECT spr round 5 (radius: 25) [01:00:34 -31518.886069] SPR radius for FAST iterations: 25 (autodetect) [01:00:34 -31518.886069] Model parameter optimization (eps = 3.000000) [01:00:43 -31487.851188] FAST spr round 1 (radius: 25) [01:01:39 -27229.817391] FAST spr round 2 (radius: 25) [01:01:52] [worker #1] ML tree search #4, logLikelihood: -26632.839052 [01:02:22 -26879.368185] FAST spr round 3 (radius: 25) [01:03:02 -26823.656194] FAST spr round 4 (radius: 25) [01:03:40 -26695.992775] FAST spr round 5 (radius: 25) [01:04:16 -26693.379639] FAST spr round 6 (radius: 25) [01:04:51 -26693.379541] Model parameter optimization (eps = 1.000000) [01:04:59 -26690.374242] SLOW spr round 1 (radius: 5) [01:05:42 -26687.214690] SLOW spr round 2 (radius: 5) [01:06:24 -26687.209203] SLOW spr round 3 (radius: 10) [01:07:08 -26687.208595] SLOW spr round 4 (radius: 15) [01:08:15 -26683.369310] SLOW spr round 5 (radius: 5) [01:09:11 -26683.069722] SLOW spr round 6 (radius: 5) [01:09:59 -26683.068745] SLOW spr round 7 (radius: 10) [01:10:48 -26675.529432] SLOW spr round 8 (radius: 5) [01:11:40 -26674.520786] SLOW spr round 9 (radius: 5) [01:12:27 -26674.519406] SLOW spr round 10 (radius: 10) [01:13:13 -26674.519279] SLOW spr round 11 (radius: 15) [01:14:14 -26674.519267] SLOW spr round 12 (radius: 20) [01:15:32 -26674.519266] SLOW spr round 13 (radius: 25) [01:17:02 -26674.519266] Model parameter optimization (eps = 0.100000) [01:17:05] [worker #0] ML tree search #5, logLikelihood: -26674.474269 [01:17:05 -91484.805204] Initial branch length optimization [01:17:06 -73588.102357] Model parameter optimization (eps = 10.000000) [01:17:20 -73560.696504] AUTODETECT spr round 1 (radius: 5) [01:18:04 -53899.964044] AUTODETECT spr round 2 (radius: 10) [01:18:55 -42627.837819] AUTODETECT spr round 3 (radius: 15) [01:19:54 -35291.100639] AUTODETECT spr round 4 (radius: 20) [01:21:01 -31705.771591] AUTODETECT spr round 5 (radius: 25) [01:21:59 -31482.364405] SPR radius for FAST iterations: 25 (autodetect) [01:21:59 -31482.364405] Model parameter optimization (eps = 3.000000) [01:22:11 -31457.468076] FAST spr round 1 (radius: 25) [01:23:01 -27870.104575] FAST spr round 2 (radius: 25) [01:23:44 -27417.337361] FAST spr round 3 (radius: 25) [01:24:23 -26823.658519] FAST spr round 4 (radius: 25) [01:25:03 -26714.546816] FAST spr round 5 (radius: 25) [01:25:38 -26712.124117] FAST spr round 6 (radius: 25) [01:26:12 -26712.122625] Model parameter optimization (eps = 1.000000) [01:26:20 -26711.096901] SLOW spr round 1 (radius: 5) [01:27:02 -26699.938654] SLOW spr round 2 (radius: 5) [01:27:46 -26695.567238] SLOW spr round 3 (radius: 5) [01:28:28 -26693.691026] SLOW spr round 4 (radius: 5) [01:29:09 -26693.690231] SLOW spr round 5 (radius: 10) [01:29:53 -26693.524564] SLOW spr round 6 (radius: 5) [01:30:46 -26691.852799] SLOW spr round 7 (radius: 5) [01:31:32 -26691.852796] SLOW spr round 8 (radius: 10) [01:32:19 -26688.840610] SLOW spr round 9 (radius: 5) [01:33:10 -26688.840582] SLOW spr round 10 (radius: 10) [01:33:32] [worker #1] ML tree search #6, logLikelihood: -26585.978350 [01:33:58 -26688.840582] SLOW spr round 11 (radius: 15) [01:34:57 -26679.252478] SLOW spr round 12 (radius: 5) [01:35:54 -26676.095601] SLOW spr round 13 (radius: 5) [01:36:42 -26675.890589] SLOW spr round 14 (radius: 5) [01:37:26 -26675.889618] SLOW spr round 15 (radius: 10) [01:38:12 -26675.889591] SLOW spr round 16 (radius: 15) [01:39:12 -26675.889591] SLOW spr round 17 (radius: 20) [01:40:31 -26675.693764] SLOW spr round 18 (radius: 5) [01:41:29 -26674.975543] SLOW spr round 19 (radius: 5) [01:42:19 -26674.975193] SLOW spr round 20 (radius: 10) [01:43:07 -26674.975151] SLOW spr round 21 (radius: 15) [01:44:06 -26674.975145] SLOW spr round 22 (radius: 20) [01:45:24 -26674.975144] SLOW spr round 23 (radius: 25) [01:46:54 -26674.538041] SLOW spr round 24 (radius: 5) [01:47:52 -26674.538040] SLOW spr round 25 (radius: 10) [01:48:45 -26674.538040] SLOW spr round 26 (radius: 15) [01:49:44 -26674.538040] SLOW spr round 27 (radius: 20) [01:51:00 -26674.538040] SLOW spr round 28 (radius: 25) [01:52:28 -26674.538040] Model parameter optimization (eps = 0.100000) [01:52:32] [worker #0] ML tree search #7, logLikelihood: -26674.454436 [01:52:32 -92171.347875] Initial branch length optimization [01:52:34 -73701.004383] Model parameter optimization (eps = 10.000000) [01:52:50 -73677.842931] AUTODETECT spr round 1 (radius: 5) [01:53:35 -54574.335782] AUTODETECT spr round 2 (radius: 10) [01:54:26 -44826.082182] AUTODETECT spr round 3 (radius: 15) [01:55:34 -38176.647816] AUTODETECT spr round 4 (radius: 20) [01:56:33 -35391.653981] AUTODETECT spr round 5 (radius: 25) [01:57:41 -31567.208110] SPR radius for FAST iterations: 25 (autodetect) [01:57:41 -31567.208110] Model parameter optimization (eps = 3.000000) [01:57:49 -31545.286857] FAST spr round 1 (radius: 25) [01:58:40 -27140.880587] FAST spr round 2 (radius: 25) [01:59:25 -26792.556692] FAST spr round 3 (radius: 25) [02:00:06 -26733.170155] FAST spr round 4 (radius: 25) [02:00:43 -26717.919128] FAST spr round 5 (radius: 25) [02:01:18 -26717.383472] FAST spr round 6 (radius: 25) [02:01:53 -26716.403359] FAST spr round 7 (radius: 25) [02:02:28 -26716.401760] Model parameter optimization (eps = 1.000000) [02:02:36 -26711.349936] SLOW spr round 1 (radius: 5) [02:03:19 -26700.797252] SLOW spr round 2 (radius: 5) [02:04:01 -26700.796856] SLOW spr round 3 (radius: 10) [02:04:45 -26700.796750] SLOW spr round 4 (radius: 15) [02:05:50 -26683.739343] SLOW spr round 5 (radius: 5) [02:06:51 -26679.416672] SLOW spr round 6 (radius: 5) [02:06:54] [worker #1] ML tree search #8, logLikelihood: -26586.443979 [02:07:41 -26678.605209] SLOW spr round 7 (radius: 5) [02:08:27 -26678.111300] SLOW spr round 8 (radius: 5) [02:09:11 -26678.110280] SLOW spr round 9 (radius: 10) [02:09:55 -26678.110034] SLOW spr round 10 (radius: 15) [02:10:56 -26677.829267] SLOW spr round 11 (radius: 5) [02:11:51 -26677.829058] SLOW spr round 12 (radius: 10) [02:12:42 -26676.710962] SLOW spr round 13 (radius: 5) [02:13:35 -26675.020004] SLOW spr round 14 (radius: 5) [02:14:21 -26674.605836] SLOW spr round 15 (radius: 5) [02:15:05 -26674.605087] SLOW spr round 16 (radius: 10) [02:15:50 -26674.605072] SLOW spr round 17 (radius: 15) [02:16:49 -26674.605072] SLOW spr round 18 (radius: 20) [02:18:01 -26671.720583] SLOW spr round 19 (radius: 5) [02:18:58 -26669.056602] SLOW spr round 20 (radius: 5) [02:19:47 -26669.056023] SLOW spr round 21 (radius: 10) [02:20:34 -26669.055953] SLOW spr round 22 (radius: 15) [02:21:33 -26669.055937] SLOW spr round 23 (radius: 20) [02:22:44 -26669.055931] SLOW spr round 24 (radius: 25) [02:24:01 -26669.055907] Model parameter optimization (eps = 0.100000) [02:24:05] [worker #0] ML tree search #9, logLikelihood: -26669.006933 [02:24:05 -91236.596437] Initial branch length optimization [02:24:06 -73123.144174] Model parameter optimization (eps = 10.000000) [02:24:20 -73103.767439] AUTODETECT spr round 1 (radius: 5) [02:25:05 -55666.044325] AUTODETECT spr round 2 (radius: 10) [02:25:57 -42926.060388] AUTODETECT spr round 3 (radius: 15) [02:27:05 -35803.405357] AUTODETECT spr round 4 (radius: 20) [02:28:07 -32653.678058] AUTODETECT spr round 5 (radius: 25) [02:29:11 -31623.478656] SPR radius for FAST iterations: 25 (autodetect) [02:29:11 -31623.478656] Model parameter optimization (eps = 3.000000) [02:29:22 -31602.677049] FAST spr round 1 (radius: 25) [02:30:20 -27431.011814] FAST spr round 2 (radius: 25) [02:31:07 -26888.245989] FAST spr round 3 (radius: 25) [02:31:47 -26844.591422] FAST spr round 4 (radius: 25) [02:32:23 -26843.050299] FAST spr round 5 (radius: 25) [02:32:58 -26843.049316] Model parameter optimization (eps = 1.000000) [02:33:07 -26838.487098] SLOW spr round 1 (radius: 5) [02:33:50 -26833.374304] SLOW spr round 2 (radius: 5) [02:34:34 -26832.507741] SLOW spr round 3 (radius: 5) [02:35:18 -26832.507042] SLOW spr round 4 (radius: 10) [02:36:04 -26829.014593] SLOW spr round 5 (radius: 5) [02:36:59 -26827.705331] SLOW spr round 6 (radius: 5) [02:37:47 -26827.705249] SLOW spr round 7 (radius: 10) [02:38:35 -26827.705191] SLOW spr round 8 (radius: 15) [02:39:39 -26825.809312] SLOW spr round 9 (radius: 5) [02:40:36 -26821.856208] SLOW spr round 10 (radius: 5) [02:41:27 -26817.592061] SLOW spr round 11 (radius: 5) [02:42:12 -26817.348960] SLOW spr round 12 (radius: 5) [02:42:55 -26817.348934] SLOW spr round 13 (radius: 10) [02:43:30] [worker #1] ML tree search #10, logLikelihood: -26588.555517 [02:43:39 -26817.348934] SLOW spr round 14 (radius: 15) [02:44:44 -26817.348934] SLOW spr round 15 (radius: 20) [02:46:05 -26817.348934] SLOW spr round 16 (radius: 25) [02:47:38 -26817.348934] Model parameter optimization (eps = 0.100000) [02:47:41] [worker #0] ML tree search #11, logLikelihood: -26817.251265 [02:47:41 -91075.403752] Initial branch length optimization [02:47:42 -73033.102534] Model parameter optimization (eps = 10.000000) [02:47:54 -73012.891123] AUTODETECT spr round 1 (radius: 5) [02:48:41 -54030.165843] AUTODETECT spr round 2 (radius: 10) [02:49:32 -42136.707359] AUTODETECT spr round 3 (radius: 15) [02:50:28 -35754.974930] AUTODETECT spr round 4 (radius: 20) [02:51:35 -31754.945357] AUTODETECT spr round 5 (radius: 25) [02:52:35 -30688.055718] SPR radius for FAST iterations: 25 (autodetect) [02:52:35 -30688.055718] Model parameter optimization (eps = 3.000000) [02:52:47 -30666.450316] FAST spr round 1 (radius: 25) [02:53:41 -27295.045731] FAST spr round 2 (radius: 25) [02:54:26 -26977.609636] FAST spr round 3 (radius: 25) [02:55:07 -26824.034223] FAST spr round 4 (radius: 25) [02:55:46 -26815.813094] FAST spr round 5 (radius: 25) [02:56:21 -26815.733891] Model parameter optimization (eps = 1.000000) [02:56:29 -26810.576102] SLOW spr round 1 (radius: 5) [02:57:13 -26802.875947] SLOW spr round 2 (radius: 5) [02:57:57 -26802.434316] SLOW spr round 3 (radius: 5) [02:58:42 -26802.161346] SLOW spr round 4 (radius: 5) [02:59:24 -26802.160845] SLOW spr round 5 (radius: 10) [03:00:08 -26802.160740] SLOW spr round 6 (radius: 15) [03:01:16 -26798.582377] SLOW spr round 7 (radius: 5) [03:02:14 -26797.229222] SLOW spr round 8 (radius: 5) [03:03:03 -26797.229016] SLOW spr round 9 (radius: 10) [03:03:52 -26796.214745] SLOW spr round 10 (radius: 5) [03:04:45 -26795.786965] SLOW spr round 11 (radius: 5) [03:05:33 -26795.786774] SLOW spr round 12 (radius: 10) [03:06:21 -26795.786768] SLOW spr round 13 (radius: 15) [03:07:24 -26795.786767] SLOW spr round 14 (radius: 20) [03:08:40 -26795.786761] SLOW spr round 15 (radius: 25) [03:10:04 -26795.049240] SLOW spr round 16 (radius: 5) [03:10:40] [worker #1] ML tree search #12, logLikelihood: -26680.222191 [03:11:02 -26795.049226] SLOW spr round 17 (radius: 10) [03:11:57 -26793.436963] SLOW spr round 18 (radius: 5) [03:12:49 -26793.436699] SLOW spr round 19 (radius: 10) [03:13:38 -26793.436699] SLOW spr round 20 (radius: 15) [03:14:40 -26793.436699] SLOW spr round 21 (radius: 20) [03:15:58 -26793.436699] SLOW spr round 22 (radius: 25) [03:17:23 -26793.436699] Model parameter optimization (eps = 0.100000) [03:17:29] [worker #0] ML tree search #13, logLikelihood: -26793.202202 [03:17:29 -92026.974783] Initial branch length optimization [03:17:30 -73222.096724] Model parameter optimization (eps = 10.000000) [03:17:42 -73191.494060] AUTODETECT spr round 1 (radius: 5) [03:18:27 -54468.821961] AUTODETECT spr round 2 (radius: 10) [03:19:18 -43210.448472] AUTODETECT spr round 3 (radius: 15) [03:20:19 -36949.813157] AUTODETECT spr round 4 (radius: 20) [03:21:23 -32003.325907] AUTODETECT spr round 5 (radius: 25) [03:22:21 -30883.684482] SPR radius for FAST iterations: 25 (autodetect) [03:22:21 -30883.684482] Model parameter optimization (eps = 3.000000) [03:22:35 -30849.719526] FAST spr round 1 (radius: 25) [03:23:27 -27240.828185] FAST spr round 2 (radius: 25) [03:24:11 -27020.672469] FAST spr round 3 (radius: 25) [03:24:50 -26993.774315] FAST spr round 4 (radius: 25) [03:25:27 -26993.260334] FAST spr round 5 (radius: 25) [03:26:01 -26993.258539] Model parameter optimization (eps = 1.000000) [03:26:06 -26992.443599] SLOW spr round 1 (radius: 5) [03:26:50 -26978.538864] SLOW spr round 2 (radius: 5) [03:27:32 -26977.134276] SLOW spr round 3 (radius: 5) [03:28:15 -26976.758738] SLOW spr round 4 (radius: 5) [03:28:57 -26976.757480] SLOW spr round 5 (radius: 10) [03:29:42 -26974.367195] SLOW spr round 6 (radius: 5) [03:30:35 -26974.366466] SLOW spr round 7 (radius: 10) [03:31:25 -26974.366349] SLOW spr round 8 (radius: 15) [03:32:25 -26974.147274] SLOW spr round 9 (radius: 5) [03:33:22 -26974.146425] SLOW spr round 10 (radius: 10) [03:34:13 -26974.146234] SLOW spr round 11 (radius: 15) [03:35:14 -26974.146188] SLOW spr round 12 (radius: 20) [03:36:27 -26973.237848] SLOW spr round 13 (radius: 5) [03:37:23 -26973.237783] SLOW spr round 14 (radius: 10) [03:38:04] [worker #1] ML tree search #14, logLikelihood: -26659.343368 [03:38:16 -26973.237781] SLOW spr round 15 (radius: 15) [03:39:16 -26973.237781] SLOW spr round 16 (radius: 20) [03:40:28 -26973.237781] SLOW spr round 17 (radius: 25) [03:41:49 -26972.024713] SLOW spr round 18 (radius: 5) [03:42:47 -26971.710110] SLOW spr round 19 (radius: 5) [03:43:38 -26853.464470] SLOW spr round 20 (radius: 5) [03:44:24 -26853.464457] SLOW spr round 21 (radius: 10) [03:45:11 -26853.464456] SLOW spr round 22 (radius: 15) [03:46:11 -26853.464456] SLOW spr round 23 (radius: 20) [03:47:23 -26853.464456] SLOW spr round 24 (radius: 25) [03:48:48 -26847.704146] SLOW spr round 25 (radius: 5) [03:49:46 -26847.702703] SLOW spr round 26 (radius: 10) [03:50:38 -26847.702668] SLOW spr round 27 (radius: 15) [03:51:39 -26838.836352] SLOW spr round 28 (radius: 5) [03:52:35 -26838.544726] SLOW spr round 29 (radius: 5) [03:53:24 -26838.544022] SLOW spr round 30 (radius: 10) [03:54:12 -26838.543927] SLOW spr round 31 (radius: 15) [03:55:13 -26838.543918] SLOW spr round 32 (radius: 20) [03:56:25 -26836.775247] SLOW spr round 33 (radius: 5) [03:57:23 -26834.544748] SLOW spr round 34 (radius: 5) [03:58:13 -26834.542169] SLOW spr round 35 (radius: 10) [03:59:02 -26830.858379] SLOW spr round 36 (radius: 5) [03:59:56 -26828.377135] SLOW spr round 37 (radius: 5) [04:00:42 -26828.037034] SLOW spr round 38 (radius: 5) [04:01:27 -26828.036960] SLOW spr round 39 (radius: 10) [04:02:13 -26828.036954] SLOW spr round 40 (radius: 15) [04:03:13 -26828.036953] SLOW spr round 41 (radius: 20) [04:04:24 -26828.036952] SLOW spr round 42 (radius: 25) [04:05:51 -26828.036952] Model parameter optimization (eps = 0.100000) [04:05:54] [worker #0] ML tree search #15, logLikelihood: -26827.971596 [04:05:54 -91793.194944] Initial branch length optimization [04:05:55 -73937.787049] Model parameter optimization (eps = 10.000000) [04:06:13 -73908.428887] AUTODETECT spr round 1 (radius: 5) [04:06:57 -55711.457810] AUTODETECT spr round 2 (radius: 10) [04:07:50 -43659.715146] AUTODETECT spr round 3 (radius: 15) [04:07:53] [worker #1] ML tree search #16, logLikelihood: -27135.278737 [04:08:56 -35925.714647] AUTODETECT spr round 4 (radius: 20) [04:10:04 -32872.481665] AUTODETECT spr round 5 (radius: 25) [04:11:20 -32494.755042] SPR radius for FAST iterations: 25 (autodetect) [04:11:20 -32494.755042] Model parameter optimization (eps = 3.000000) [04:11:34 -32452.405279] FAST spr round 1 (radius: 25) [04:12:30 -27565.387154] FAST spr round 2 (radius: 25) [04:13:18 -27066.242716] FAST spr round 3 (radius: 25) [04:13:59 -27020.542495] FAST spr round 4 (radius: 25) [04:14:37 -27007.679133] FAST spr round 5 (radius: 25) [04:15:13 -27003.976886] FAST spr round 6 (radius: 25) [04:15:48 -27003.974977] Model parameter optimization (eps = 1.000000) [04:15:56 -26998.323672] SLOW spr round 1 (radius: 5) [04:16:39 -26991.821578] SLOW spr round 2 (radius: 5) [04:17:22 -26990.617050] SLOW spr round 3 (radius: 5) [04:18:04 -26990.616727] SLOW spr round 4 (radius: 10) [04:18:51 -26981.074627] SLOW spr round 5 (radius: 5) [04:19:46 -26979.379641] SLOW spr round 6 (radius: 5) [04:20:33 -26979.379502] SLOW spr round 7 (radius: 10) [04:21:20 -26979.379359] SLOW spr round 8 (radius: 15) [04:22:23 -26979.047147] SLOW spr round 9 (radius: 5) [04:23:18 -26979.035512] SLOW spr round 10 (radius: 10) [04:24:09 -26979.034988] SLOW spr round 11 (radius: 15) [04:24:54] [worker #1] ML tree search #18, logLikelihood: -26572.745454 [04:25:12 -26979.034530] SLOW spr round 12 (radius: 20) [04:26:28 -26976.303760] SLOW spr round 13 (radius: 5) [04:27:26 -26973.149164] SLOW spr round 14 (radius: 5) [04:28:14 -26973.147899] SLOW spr round 15 (radius: 10) [04:29:01 -26973.146790] SLOW spr round 16 (radius: 15) [04:30:05 -26973.145902] SLOW spr round 17 (radius: 20) [04:31:21 -26973.145109] SLOW spr round 18 (radius: 25) [04:32:48 -26973.144401] Model parameter optimization (eps = 0.100000) [04:32:54] [worker #0] ML tree search #17, logLikelihood: -26972.825605 [04:32:54 -91646.262474] Initial branch length optimization [04:32:56 -73180.875948] Model parameter optimization (eps = 10.000000) [04:33:05 -73166.236398] AUTODETECT spr round 1 (radius: 5) [04:33:51 -54921.379516] AUTODETECT spr round 2 (radius: 10) [04:34:43 -44685.064630] AUTODETECT spr round 3 (radius: 15) [04:35:44 -37566.005610] AUTODETECT spr round 4 (radius: 20) [04:36:44 -34520.432620] AUTODETECT spr round 5 (radius: 25) [04:37:56 -32718.269915] SPR radius for FAST iterations: 25 (autodetect) [04:37:56 -32718.269915] Model parameter optimization (eps = 3.000000) [04:38:06 -32696.493754] FAST spr round 1 (radius: 25) [04:39:07 -27450.494210] FAST spr round 2 (radius: 25) [04:39:55 -26801.413653] FAST spr round 3 (radius: 25) [04:40:39 -26680.094234] FAST spr round 4 (radius: 25) [04:41:17 -26665.285515] FAST spr round 5 (radius: 25) [04:41:53 -26664.988558] FAST spr round 6 (radius: 25) [04:42:28 -26664.988218] Model parameter optimization (eps = 1.000000) [04:42:36 -26661.955993] SLOW spr round 1 (radius: 5) [04:43:20 -26647.377230] SLOW spr round 2 (radius: 5) [04:44:04 -26647.351329] SLOW spr round 3 (radius: 10) [04:44:50 -26645.056611] SLOW spr round 4 (radius: 5) [04:45:45 -26643.149937] SLOW spr round 5 (radius: 5) [04:46:32 -26643.144578] SLOW spr round 6 (radius: 10) [04:47:19 -26643.143387] SLOW spr round 7 (radius: 15) [04:48:21 -26642.905485] SLOW spr round 8 (radius: 5) [04:49:17 -26642.901147] SLOW spr round 9 (radius: 10) [04:50:08 -26642.901027] SLOW spr round 10 (radius: 15) [04:51:08 -26642.900999] SLOW spr round 11 (radius: 20) [04:52:24 -26641.985078] SLOW spr round 12 (radius: 5) [04:53:20 -26641.985030] SLOW spr round 13 (radius: 10) [04:54:11 -26641.985025] SLOW spr round 14 (radius: 15) [04:54:25] [worker #1] ML tree search #20, logLikelihood: -26565.598098 [04:55:10 -26641.985025] SLOW spr round 15 (radius: 20) [04:56:26 -26641.985024] SLOW spr round 16 (radius: 25) [04:57:52 -26639.777988] SLOW spr round 17 (radius: 5) [04:58:50 -26636.805890] SLOW spr round 18 (radius: 5) [04:59:40 -26635.951448] SLOW spr round 19 (radius: 5) [05:00:24 -26635.950005] SLOW spr round 20 (radius: 10) [05:01:10 -26635.949864] SLOW spr round 21 (radius: 15) [05:02:10 -26635.949850] SLOW spr round 22 (radius: 20) [05:03:26 -26634.220933] SLOW spr round 23 (radius: 5) [05:04:22 -26634.219087] SLOW spr round 24 (radius: 10) [05:05:13 -26634.218896] SLOW spr round 25 (radius: 15) [05:06:13 -26633.645219] SLOW spr round 26 (radius: 5) [05:07:09 -26632.670744] SLOW spr round 27 (radius: 5) [05:07:58 -26632.668765] SLOW spr round 28 (radius: 10) [05:08:46 -26631.194571] SLOW spr round 29 (radius: 5) [05:09:37 -26631.194118] SLOW spr round 30 (radius: 10) [05:10:26 -26631.194096] SLOW spr round 31 (radius: 15) [05:11:25 -26631.194090] SLOW spr round 32 (radius: 20) [05:12:37 -26631.019389] SLOW spr round 33 (radius: 5) [05:13:33 -26631.018220] SLOW spr round 34 (radius: 10) [05:14:26 -26631.018111] SLOW spr round 35 (radius: 15) [05:15:24 -26631.018100] SLOW spr round 36 (radius: 20) [05:16:36 -26631.018099] SLOW spr round 37 (radius: 25) [05:17:58 -26631.018099] Model parameter optimization (eps = 0.100000) [05:18:04] [worker #0] ML tree search #19, logLikelihood: -26630.433951 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.239727,0.189990) (0.176631,0.538034) (0.321331,1.022512) (0.262311,2.023764) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -26561.575242 AIC score: 55849.150483 / AICc score: 3774113.150483 / BIC score: 59344.357068 Free parameters (model + branch lengths): 1363 WARNING: Number of free parameters (K=1363) is larger than alignment size (n=96). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13064/3_mltree/Q13064.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13064/3_mltree/Q13064.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13064/3_mltree/Q13064.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q13064/3_mltree/Q13064.raxml.log Analysis started: 03-Jul-2021 15:53:19 / finished: 03-Jul-2021 21:11:24 Elapsed time: 19084.732 seconds Consumed energy: 1065.593 Wh (= 5 km in an electric car, or 27 km with an e-scooter!)