RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 12-Jul-2021 17:31:19 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q12824/2_msa/Q12824_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q12824/3_mltree/Q12824.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q12824/4_raxmlng_ancestral/Q12824 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626100279 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q12824/2_msa/Q12824_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 385 sites WARNING: Sequences tr_B4QWW1_B4QWW1_DROSI_7240 and tr_Q24090_Q24090_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QWW1_B4QWW1_DROSI_7240 and tr_B4I408_B4I408_DROSE_7238 are exactly identical! WARNING: Sequences tr_E2ACH7_E2ACH7_CAMFO_104421 and tr_A0A158NBU7_A0A158NBU7_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2ACH7_E2ACH7_CAMFO_104421 and tr_F4X888_F4X888_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2ACH7_E2ACH7_CAMFO_104421 and tr_A0A151X9S5_A0A151X9S5_9HYME_64791 are exactly identical! WARNING: Sequences tr_E2ACH7_E2ACH7_CAMFO_104421 and tr_A0A151J937_A0A151J937_9HYME_471704 are exactly identical! WARNING: Sequences tr_E2ACH7_E2ACH7_CAMFO_104421 and tr_A0A195BG33_A0A195BG33_9HYME_520822 are exactly identical! WARNING: Sequences tr_E2ACH7_E2ACH7_CAMFO_104421 and tr_A0A195FDD4_A0A195FDD4_9HYME_34720 are exactly identical! WARNING: Sequences tr_E2ACH7_E2ACH7_CAMFO_104421 and tr_A0A195CBG5_A0A195CBG5_9HYME_456900 are exactly identical! WARNING: Sequences sp_Q5ZK40_SNF5_CHICK_9031 and tr_A0A0Q3UQ60_A0A0Q3UQ60_AMAAE_12930 are exactly identical! WARNING: Sequences sp_Q5ZK40_SNF5_CHICK_9031 and tr_A0A2I0LZ72_A0A2I0LZ72_COLLI_8932 are exactly identical! WARNING: Sequences sp_Q5ZK40_SNF5_CHICK_9031 and tr_A0A1V4JSZ1_A0A1V4JSZ1_PATFA_372326 are exactly identical! WARNING: Sequences sp_Q5ZK40_SNF5_CHICK_9031 and tr_A0A218V2N2_A0A218V2N2_9PASE_299123 are exactly identical! WARNING: Sequences sp_Q5ZK40_SNF5_CHICK_9031 and tr_A0A226Q004_A0A226Q004_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_G1P3N2_G1P3N2_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_E2RMD3_E2RMD3_CANLF_9615 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_I3MJ39_I3MJ39_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and sp_Q12824_SNF5_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_H9H3A6_H9H3A6_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_G5B642_G5B642_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_U3FFQ1_U3FFQ1_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_F2Z4X9_F2Z4X9_PIG_9823 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_G1M4Y7_G1M4Y7_AILME_9646 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_L5KW07_L5KW07_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_A0A096NWL0_A0A096NWL0_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_A0A0D9RFV1_A0A0D9RFV1_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_A0A1S3F003_A0A1S3F003_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_A0A1U7UFK0_A0A1U7UFK0_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_A0A1U7QMN7_A0A1U7QMN7_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_A0A2K5LCI0_A0A2K5LCI0_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_A0A2K6C9E4_A0A2K6C9E4_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_A0A2R9A3R9_A0A2R9A3R9_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_A0A2U3VYJ2_A0A2U3VYJ2_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_A0A2Y9E4U1_A0A2Y9E4U1_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_A0A2Y9IT92_A0A2Y9IT92_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_A0A2Y9LB33_A0A2Y9LB33_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_A0A2Y9FNK1_A0A2Y9FNK1_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q9Z0H3_SNF5_MOUSE_10090 and tr_A0A384B9K0_A0A384B9K0_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3XV80_M3XV80_MUSPF_9669 and tr_H2R0D2_H2R0D2_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3XV80_M3XV80_MUSPF_9669 and tr_Q4KLI0_Q4KLI0_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XV80_M3XV80_MUSPF_9669 and tr_H0X1K5_H0X1K5_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3XV80_M3XV80_MUSPF_9669 and tr_A0A286XMN7_A0A286XMN7_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3XV80_M3XV80_MUSPF_9669 and tr_G8F613_G8F613_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3XV80_M3XV80_MUSPF_9669 and tr_A0A337SEA8_A0A337SEA8_FELCA_9685 are exactly identical! WARNING: Sequences tr_A0A0E1RV99_A0A0E1RV99_COCIM_246410 and tr_A0A0J7BFU5_A0A0J7BFU5_COCIT_404692 are exactly identical! WARNING: Sequences tr_C0NWB2_C0NWB2_AJECG_447093 and tr_F0UB55_F0UB55_AJEC8_544711 are exactly identical! WARNING: Sequences tr_B5DXY5_B5DXY5_DROPS_46245 and tr_B3LZH7_B3LZH7_DROAN_7217 are exactly identical! WARNING: Sequences tr_B5DXY5_B5DXY5_DROPS_46245 and tr_B4GF89_B4GF89_DROPE_7234 are exactly identical! WARNING: Sequences tr_B5DXY5_B5DXY5_DROPS_46245 and tr_B4LZC1_B4LZC1_DROVI_7244 are exactly identical! WARNING: Sequences tr_B5DXY5_B5DXY5_DROPS_46245 and tr_B4KD96_B4KD96_DROMO_7230 are exactly identical! WARNING: Sequences tr_B8NPV8_B8NPV8_ASPFN_332952 and tr_A0A1S9DSU6_A0A1S9DSU6_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_F9FW54_F9FW54_FUSOF_660025 and tr_N4TM96_N4TM96_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9FW54_F9FW54_FUSOF_660025 and tr_A0A2H3T4C1_A0A2H3T4C1_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9FW54_F9FW54_FUSOF_660025 and tr_A0A2H3HG29_A0A2H3HG29_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F9FW54_F9FW54_FUSOF_660025 and tr_A0A2K0WD97_A0A2K0WD97_GIBNY_42673 are exactly identical! WARNING: Sequences tr_E9F0M0_E9F0M0_METRA_655844 and tr_A0A0B4I4R2_A0A0B4I4R2_METMF_1276143 are exactly identical! WARNING: Sequences tr_E9F0M0_E9F0M0_METRA_655844 and tr_A0A0D9NUF9_A0A0D9NUF9_METAN_1291518 are exactly identical! WARNING: Sequences tr_J4KP50_J4KP50_BEAB2_655819 and tr_A0A0A2WI87_A0A0A2WI87_BEABA_1245745 are exactly identical! WARNING: Sequences tr_A0A088AH82_A0A088AH82_APIME_7460 and tr_A0A2A3ESG5_A0A2A3ESG5_APICC_94128 are exactly identical! WARNING: Sequences tr_A2QK07_A2QK07_ASPNC_425011 and tr_A0A318ZY28_A0A318ZY28_9EURO_1450533 are exactly identical! WARNING: Sequences tr_G7XVN2_G7XVN2_ASPKW_1033177 and tr_A0A117DXR6_A0A117DXR6_ASPNG_5061 are exactly identical! WARNING: Sequences tr_G7XVN2_G7XVN2_ASPKW_1033177 and tr_A0A146FJ48_A0A146FJ48_9EURO_1069201 are exactly identical! WARNING: Sequences tr_A2X937_A2X937_ORYSI_39946 and tr_I1P3R9_I1P3R9_ORYGL_4538 are exactly identical! WARNING: Sequences tr_A2X937_A2X937_ORYSI_39946 and tr_A0A0D3F9W2_A0A0D3F9W2_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A2X937_A2X937_ORYSI_39946 and tr_A0A0D9YXL3_A0A0D9YXL3_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_F4NVE5_F4NVE5_BATDJ_684364 and tr_A0A177WD51_A0A177WD51_BATDE_403673 are exactly identical! WARNING: Sequences tr_G2YST4_G2YST4_BOTF4_999810 and tr_M7U9F6_M7U9F6_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_F2SRX8_F2SRX8_TRIRC_559305 and tr_D4B488_D4B488_ARTBC_663331 are exactly identical! WARNING: Sequences tr_F2SRX8_F2SRX8_TRIRC_559305 and tr_A0A178EXQ2_A0A178EXQ2_TRIRU_5551 are exactly identical! WARNING: Sequences tr_M7ZS36_M7ZS36_TRIUA_4572 and tr_A0A3B5XWL4_A0A3B5XWL4_WHEAT_4565 are exactly identical! WARNING: Sequences tr_U3I6C1_U3I6C1_ANAPL_8839 and tr_A0A093RXB4_A0A093RXB4_9PASS_328815 are exactly identical! WARNING: Sequences tr_U3I6C1_U3I6C1_ANAPL_8839 and tr_A0A091G844_A0A091G844_9AVES_55661 are exactly identical! WARNING: Sequences tr_U3I6C1_U3I6C1_ANAPL_8839 and tr_A0A093G0Y9_A0A093G0Y9_DRYPU_118200 are exactly identical! WARNING: Sequences tr_U5HIL3_U5HIL3_USTV1_683840 and tr_A0A2X0NH86_A0A2X0NH86_9BASI_796604 are exactly identical! WARNING: Sequences tr_W2Q9J3_W2Q9J3_PHYPN_761204 and tr_W2L8B5_W2L8B5_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A015LEQ5_A0A015LEQ5_9GLOM_1432141 and tr_A0A2H5U8U6_A0A2H5U8U6_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A091D0Q3_A0A091D0Q3_FUKDA_885580 and tr_A0A2U3YRS1_A0A2U3YRS1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A094EB65_A0A094EB65_9PEZI_1420912 and tr_A0A1B8GDE3_A0A1B8GDE3_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A0D2UDG7_A0A0D2UDG7_GOSRA_29730 and tr_A0A1U8JNF6_A0A1U8JNF6_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0F8U1P6_A0A0F8U1P6_9EURO_308745 and tr_A0A2T5LLU2_A0A2T5LLU2_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0K0F7D3_A0A0K0F7D3_STRVS_75913 and tr_A0A0N5BVU3_A0A0N5BVU3_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0A1NAF0_A0A0A1NAF0_9FUNG_58291 and tr_A0A367K9E3_A0A367K9E3_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A151N493_A0A151N493_ALLMI_8496 and tr_A0A1U7RTD0_A0A1U7RTD0_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0M9A1C1_A0A0M9A1C1_9HYME_166423 and tr_A0A154P8C2_A0A154P8C2_9HYME_178035 are exactly identical! WARNING: Sequences tr_A0A0V0S3Q2_A0A0V0S3Q2_9BILA_6336 and tr_A0A0V1DAD9_A0A0V1DAD9_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0S3Q2_A0A0V0S3Q2_9BILA_6336 and tr_A0A0V0WE97_A0A0V0WE97_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0S3Q2_A0A0V0S3Q2_9BILA_6336 and tr_A0A0V1ADZ5_A0A0V1ADZ5_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0S3Q2_A0A0V0S3Q2_9BILA_6336 and tr_A0A0V1I326_A0A0V1I326_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V0S3Q2_A0A0V0S3Q2_9BILA_6336 and tr_A0A0V0UHU7_A0A0V0UHU7_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0VFP8_A0A0V0VFP8_9BILA_181606 and tr_A0A0V1KY31_A0A0V1KY31_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0VFP8_A0A0V0VFP8_9BILA_181606 and tr_A0A0V1P9K3_A0A0V1P9K3_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A1C3YLA2_A0A1C3YLA2_GIBZE_229533 and tr_A0A2T4H1H5_A0A2T4H1H5_FUSCU_5516 are exactly identical! WARNING: Sequences tr_A0A1S3XJ64_A0A1S3XJ64_TOBAC_4097 and tr_A0A1U7XGB3_A0A1U7XGB3_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3M5T8_A0A1S3M5T8_SALSA_8030 and tr_A0A060XS89_A0A060XS89_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3PHM5_A0A1S3PHM5_SALSA_8030 and tr_A0A060WIV0_A0A060WIV0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2H3BZ10_A0A2H3BZ10_9AGAR_1076256 and tr_A0A284RMN6_A0A284RMN6_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A2D0T0S3_A0A2D0T0S3_ICTPU_7998 and tr_A0A2D0T1Q3_A0A2D0T1Q3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T0S8_A0A2D0T0S8_ICTPU_7998 and tr_A0A2D0T160_A0A2D0T160_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1U8GF00_A0A1U8GF00_CAPAN_4072 and tr_A0A2G3CM32_A0A2G3CM32_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2P5F5L8_A0A2P5F5L8_TREOI_63057 and tr_A0A2P5CUV0_A0A2P5CUV0_PARAD_3476 are exactly identical! WARNING: Sequences tr_A0A367XW15_A0A367XW15_9ASCO_5486 and tr_A0A367YHI9_A0A367YHI9_9ASCO_5486 are exactly identical! WARNING: Duplicate sequences found: 101 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q12824/4_raxmlng_ancestral/Q12824.raxml.reduced.phy Alignment comprises 1 partitions and 385 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 385 Gaps: 26.81 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q12824/4_raxmlng_ancestral/Q12824.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q12824/3_mltree/Q12824.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 97 / 7760 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -155573.193373 [00:00:00 -155573.193373] Initial branch length optimization [00:00:01 -153600.921051] Model parameter optimization (eps = 0.100000) [00:00:33] Tree #1, final logLikelihood: -152902.519199 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.174054,0.437051) (0.137006,0.490251) (0.325302,0.860743) (0.363638,1.586086) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q12824/4_raxmlng_ancestral/Q12824.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q12824/4_raxmlng_ancestral/Q12824.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q12824/4_raxmlng_ancestral/Q12824.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q12824/4_raxmlng_ancestral/Q12824.raxml.log Analysis started: 12-Jul-2021 17:31:19 / finished: 12-Jul-2021 17:31:56 Elapsed time: 37.053 seconds Consumed energy: 2.483 Wh