RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 12-Jul-2021 16:39:11 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q0VAK6/2_msa/Q0VAK6_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q0VAK6/3_mltree/Q0VAK6.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q0VAK6/4_raxmlng_ancestral/Q0VAK6 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626097151 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q0VAK6/2_msa/Q0VAK6_nogap_msa.fasta [00:00:00] Loaded alignment with 812 taxa and 560 sites WARNING: Sequences tr_M3XY54_M3XY54_MUSPF_9669 and tr_A0A2Y9L766_A0A2Y9L766_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G3RI10_G3RI10_GORGO_9595 and tr_H2NN87_H2NN87_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3RI10_G3RI10_GORGO_9595 and sp_Q9NZR1_TMOD2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2J8WNH7_A0A2J8WNH7_PONAB_9601 and tr_A0A2R9A154_A0A2R9A154_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2NN88_H2NN88_PONAB_9601 and tr_H2Q9G1_H2Q9G1_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2NN88_H2NN88_PONAB_9601 and tr_A0A2R9A378_A0A2R9A378_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1T4H0_G1T4H0_RABIT_9986 and tr_G1TRH9_G1TRH9_RABIT_9986 are exactly identical! WARNING: Sequences tr_H2PZY2_H2PZY2_PANTR_9598 and sp_Q9NZQ9_TMOD4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PZY2_H2PZY2_PANTR_9598 and tr_F6PSC9_F6PSC9_MACMU_9544 are exactly identical! WARNING: Sequences tr_H2PZY2_H2PZY2_PANTR_9598 and tr_G8F2C3_G8F2C3_MACFA_9541 are exactly identical! WARNING: Sequences tr_H2PZY2_H2PZY2_PANTR_9598 and tr_A9X195_A9X195_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H2PZY2_H2PZY2_PANTR_9598 and tr_A0A0D9S5U7_A0A0D9S5U7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H2PZY2_H2PZY2_PANTR_9598 and tr_A0A2K5LVF0_A0A2K5LVF0_CERAT_9531 are exactly identical! WARNING: Sequences tr_H2PZY2_H2PZY2_PANTR_9598 and tr_A0A2K6DJL8_A0A2K6DJL8_MACNE_9545 are exactly identical! WARNING: Sequences tr_H2PZY2_H2PZY2_PANTR_9598 and tr_A0A2R9ANE4_A0A2R9ANE4_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2Q9G0_H2Q9G0_PANTR_9598 and tr_A0A2R9ADJ1_A0A2R9ADJ1_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2R4Z6_H2R4Z6_PANTR_9598 and sp_Q6P5Q4_LMOD2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2R4Z6_H2R4Z6_PANTR_9598 and tr_A0A2R9B0U2_A0A2R9B0U2_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A158NB57_A0A158NB57_ATTCE_12957 and tr_F4WXV5_F4WXV5_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NB57_A0A158NB57_ATTCE_12957 and tr_A0A195BSR3_A0A195BSR3_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A0I9R383_A0A0I9R383_BRUMA_6279 and tr_A0A0N4SY51_A0A0N4SY51_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0I9R383_A0A0I9R383_BRUMA_6279 and tr_A0A0R3QVE5_A0A0R3QVE5_9BILA_42155 are exactly identical! WARNING: Sequences tr_A0A1D5RHC4_A0A1D5RHC4_MACMU_9544 and tr_G7PRW3_G7PRW3_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A1D5RHC4_A0A1D5RHC4_MACMU_9544 and tr_A0A096P138_A0A096P138_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5RHC4_A0A1D5RHC4_MACMU_9544 and tr_A0A2K6C8Y4_A0A2K6C8Y4_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A1D5RHC4_A0A1D5RHC4_MACMU_9544 and tr_A0A2K5YER1_A0A2K5YER1_MANLE_9568 are exactly identical! WARNING: Sequences tr_F6TZ47_F6TZ47_MACMU_9544 and tr_A0A096N290_A0A096N290_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6TZ47_F6TZ47_MACMU_9544 and tr_A0A2K6AFH7_A0A2K6AFH7_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7BU89_F7BU89_MACMU_9544 and tr_G7P0J9_G7P0J9_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7C5M5_F7C5M5_MACMU_9544 and tr_G7PBH4_G7PBH4_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7HPP2_F7HPP2_MACMU_9544 and tr_G7PBH3_G7PBH3_MACFA_9541 are exactly identical! WARNING: Sequences tr_A8WVR8_A8WVR8_CAEBR_6238 and tr_A0A2G5VEV4_A0A2G5VEV4_9PELO_1611254 are exactly identical! WARNING: Sequences tr_G1LE04_G1LE04_AILME_9646 and tr_A0A2U3VCS6_A0A2U3VCS6_ODORO_9708 are exactly identical! WARNING: Sequences tr_G7NWE8_G7NWE8_MACFA_9541 and tr_A0A0D9RNK0_A0A0D9RNK0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A0D9RG02_A0A0D9RG02_CHLSB_60711 and tr_A0A2K5L8V2_A0A2K5L8V2_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D9RG02_A0A0D9RG02_CHLSB_60711 and tr_A0A2K5Y749_A0A2K5Y749_MANLE_9568 are exactly identical! WARNING: Sequences tr_R7VPW8_R7VPW8_COLLI_8932 and tr_A0A1V4J5J2_A0A1V4J5J2_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V1CGS0_A0A0V1CGS0_TRIBR_45882 and tr_A0A0V0UPD1_A0A0V0UPD1_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CGS0_A0A0V1CGS0_TRIBR_45882 and tr_A0A0V1LMX6_A0A0V1LMX6_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1CGS0_A0A0V1CGS0_TRIBR_45882 and tr_A0A0V0ZKL0_A0A0V0ZKL0_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1CGS0_A0A0V1CGS0_TRIBR_45882 and tr_A0A0V0U916_A0A0V0U916_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1CZJ1_A0A0V1CZJ1_TRIBR_45882 and tr_A0A0V0UQW1_A0A0V0UQW1_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CZJ1_A0A0V1CZJ1_TRIBR_45882 and tr_A0A0V1NI55_A0A0V1NI55_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1CZJ1_A0A0V1CZJ1_TRIBR_45882 and tr_A0A0V0TEN3_A0A0V0TEN3_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0W3X5_A0A0V0W3X5_9BILA_92179 and tr_A0A0V1L4K6_A0A0V1L4K6_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0W3X5_A0A0V0W3X5_9BILA_92179 and tr_A0A0V0ZVW2_A0A0V0ZVW2_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A226MS96_A0A226MS96_CALSU_9009 and tr_A0A226PIM8_A0A226PIM8_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2K5N4D9_A0A2K5N4D9_CERAT_9531 and tr_A0A2K6D6A0_A0A2K6D6A0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2Y9T4Y6_A0A2Y9T4Y6_PHYCD_9755 and tr_A0A384B5Y4_A0A384B5Y4_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 49 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q0VAK6/4_raxmlng_ancestral/Q0VAK6.raxml.reduced.phy Alignment comprises 1 partitions and 560 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 560 Gaps: 36.77 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q0VAK6/4_raxmlng_ancestral/Q0VAK6.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q0VAK6/3_mltree/Q0VAK6.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 140 / 11200 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -129872.572871 [00:00:00 -129872.572871] Initial branch length optimization [00:00:01 -128873.586485] Model parameter optimization (eps = 0.100000) RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 12-Jul-2021 17:58:47 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q0VAK6/2_msa/Q0VAK6_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q0VAK6/3_mltree/Q0VAK6.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q0VAK6/4_raxmlng_ancestral/Q0VAK6 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1626101927 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF WARNING: The model you specified on the command line (LG4X) will be ignored since the binary MSA file already contains a model definition. If you want to change the model, please re-run RAxML-NG with the original PHYLIP/FASTA alignment and --redo option. [00:00:00] Loading binary alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q0VAK6/4_raxmlng_ancestral/Q0VAK6.raxml.rba [00:00:00] Alignment comprises 812 taxa, 1 partitions and 560 patterns Partition 0: noname Model: LG4X+R4 Alignment sites: 560 Gaps: 36.77 % Invariant sites: 0.00 % Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] NOTE: Resuming execution from checkpoint (logLH: -128873.59, ML trees: 0, bootstraps: 0) [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 140 / 11200 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -128873.586485 [00:00:00 -128873.586485] Model parameter optimization (eps = 0.100000) [00:00:48] Tree #1, final logLikelihood: -128310.915032 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.151359,0.433737) (0.086374,0.306371) (0.297124,0.636586) (0.465143,1.545208) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q0VAK6/4_raxmlng_ancestral/Q0VAK6.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q0VAK6/4_raxmlng_ancestral/Q0VAK6.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q0VAK6/4_raxmlng_ancestral/Q0VAK6.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q0VAK6/4_raxmlng_ancestral/Q0VAK6.raxml.log Analysis started: 12-Jul-2021 17:58:47 / finished: 12-Jul-2021 17:59:40 Elapsed time: 53.320 seconds (this run) / 54.508 seconds (total with restarts) Consumed energy: 3.277 Wh