RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 30-Jun-2021 18:56:30 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q09472/2_msa/Q09472_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q09472/3_mltree/Q09472 --seed 2 --threads 3 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (3 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q09472/2_msa/Q09472_trimmed_msa.fasta [00:00:00] Loaded alignment with 970 taxa and 139 sites WARNING: Sequences tr_B4R761_B4R761_DROSI_7240 and tr_B4IDI6_B4IDI6_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4R761_B4R761_DROSI_7240 and tr_A0A1W4VTV0_A0A1W4VTV0_DROFC_30025 are exactly identical! WARNING: Sequences tr_E9HPX2_E9HPX2_DAPPU_6669 and tr_A0A164RHI9_A0A164RHI9_9CRUS_35525 are exactly identical! WARNING: Sequences tr_E2AQY6_E2AQY6_CAMFO_104421 and tr_A0A158NZI1_A0A158NZI1_ATTCE_12957 are exactly identical! WARNING: Sequences tr_E2AQY6_E2AQY6_CAMFO_104421 and tr_F4WL85_F4WL85_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2AQY6_E2AQY6_CAMFO_104421 and tr_A0A195FCA5_A0A195FCA5_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A0R4IPF2_A0A0R4IPF2_DANRE_7955 and tr_A0A2R8Q521_A0A2R8Q521_DANRE_7955 are exactly identical! WARNING: Sequences tr_A0A0R4IUG1_A0A0R4IUG1_DANRE_7955 and tr_A0A2R8QER3_A0A2R8QER3_DANRE_7955 are exactly identical! WARNING: Sequences tr_A0A1D5PPD0_A0A1D5PPD0_CHICK_9031 and tr_G1NAQ7_G1NAQ7_MELGA_9103 are exactly identical! WARNING: Sequences tr_A0A1D5PPD0_A0A1D5PPD0_CHICK_9031 and tr_F7E905_F7E905_MONDO_13616 are exactly identical! WARNING: Sequences tr_A0A1D5PPD0_A0A1D5PPD0_CHICK_9031 and tr_U3J7Q2_U3J7Q2_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PPD0_A0A1D5PPD0_CHICK_9031 and tr_A0A091IX75_A0A091IX75_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A1D5PPD0_A0A1D5PPD0_CHICK_9031 and tr_A0A087QIC9_A0A087QIC9_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A1D5PPD0_A0A1D5PPD0_CHICK_9031 and tr_A0A093JR67_A0A093JR67_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A1D5PPD0_A0A1D5PPD0_CHICK_9031 and tr_A0A099ZAD6_A0A099ZAD6_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A1D5PPD0_A0A1D5PPD0_CHICK_9031 and tr_A0A0A0A874_A0A0A0A874_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A1D5PPD0_A0A1D5PPD0_CHICK_9031 and tr_A0A2I0M4E3_A0A2I0M4E3_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PPD0_A0A1D5PPD0_CHICK_9031 and tr_A0A093GKV8_A0A093GKV8_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1D5PPD0_A0A1D5PPD0_CHICK_9031 and tr_A0A1V4KT87_A0A1V4KT87_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1D5PPD0_A0A1D5PPD0_CHICK_9031 and tr_A0A226MYG1_A0A226MYG1_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PPD0_A0A1D5PPD0_CHICK_9031 and tr_A0A226P456_A0A226P456_COLVI_9014 are exactly identical! WARNING: Sequences tr_E1BSS0_E1BSS0_CHICK_9031 and tr_G1NHW7_G1NHW7_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1BSS0_E1BSS0_CHICK_9031 and tr_A0A226MGM4_A0A226MGM4_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1BSS0_E1BSS0_CHICK_9031 and tr_A0A226NVY2_A0A226NVY2_COLVI_9014 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_G1RFB2_G1RFB2_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_G1NVG2_G1NVG2_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_G3QT87_G3QT87_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_H2NPZ7_H2NPZ7_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_G1SLV2_G1SLV2_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_F1PY87_F1PY87_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_K7DBC8_K7DBC8_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_F6XWM7_F6XWM7_ORNAN_9258 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_F6PZC1_F6PZC1_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_W5NWW4_W5NWW4_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and sp_Q6JHU9_CBP_RAT_10116 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_I3M5C0_I3M5C0_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_H0WKG8_H0WKG8_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A286Y225_A0A286Y225_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and sp_Q92793_CBP_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_F6RRA8_F6RRA8_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_G3WLJ1_G3WLJ1_SARHA_9305 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_H0Z0Q9_H0Z0Q9_TAEGU_59729 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_F6T0B6_F6T0B6_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_F1RK46_F1RK46_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_G1LWF0_G1LWF0_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_L5KGL1_L5KGL1_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_M3W5K5_M3W5K5_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_U3JNZ7_U3JNZ7_FICAL_59894 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A096NLD5_A0A096NLD5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A091D1E4_A0A091D1E4_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A151NHE3_A0A151NHE3_ALLMI_8496 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A091F366_A0A091F366_CORBR_85066 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A091FPX8_A0A091FPX8_9AVES_55661 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A1S3ETC7_A0A1S3ETC7_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A1U7UAL9_A0A1U7UAL9_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A1U8DJG6_A0A1U8DJG6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A1U8CCD3_A0A1U8CCD3_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A2K5N6V7_A0A2K5N6V7_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A2K6DYW2_A0A2K6DYW2_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A2K5XC41_A0A2K5XC41_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A2R9BM84_A0A2R9BM84_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A2U3W573_A0A2U3W573_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A2U3YT32_A0A2U3YT32_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A2Y9KH82_A0A2Y9KH82_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A2Y9PZ76_A0A2Y9PZ76_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A2Y9SNR5_A0A2Y9SNR5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YUB5_M3YUB5_MUSPF_9669 and tr_A0A384A2L5_A0A384A2L5_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A2I3GX51_A0A2I3GX51_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_G1PQW0_G1PQW0_MYOLU_59463 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_G3I534_G3I534_CRIGR_10029 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_G3QYU0_G3QYU0_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_H2P4I4_H2P4I4_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_E2RBY3_E2RBY3_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_H2QLS0_H2QLS0_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_F7BD82_F7BD82_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_I3LX84_I3LX84_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_H0WGE2_H0WGE2_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_H0V5G4_H0V5G4_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and sp_Q09472_EP300_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_F6T7D0_F6T7D0_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_G5BVC4_G5BVC4_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_G3T955_G3T955_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_F7IS08_F7IS08_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_G1M5Y3_G1M5Y3_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_G7PFM4_G7PFM4_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_M3W3A6_M3W3A6_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A096NK98_A0A096NK98_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A091DZZ5_A0A091DZZ5_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A0D9R0L4_A0A0D9R0L4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A1U7UC27_A0A1U7UC27_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A3Q0CLX8_A0A3Q0CLX8_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A2K5NX57_A0A2K5NX57_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A2K5ZTX1_A0A2K5ZTX1_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A2R9ATU0_A0A2R9ATU0_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A2U4C281_A0A2U4C281_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A2U3VQL3_A0A2U3VQL3_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A2U3XF65_A0A2U3XF65_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A2Y9DGZ6_A0A2Y9DGZ6_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A2Y9KUN9_A0A2Y9KUN9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A2Y9Q5F4_A0A2Y9Q5F4_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A2Y9EDY2_A0A2Y9EDY2_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A384D2M5_A0A384D2M5_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3YYB3_M3YYB3_MUSPF_9669 and tr_A0A384APP2_A0A384APP2_BALAS_310752 are exactly identical! WARNING: Sequences tr_G1QCZ0_G1QCZ0_MYOLU_59463 and tr_A0A0R3Q9Z4_A0A0R3Q9Z4_9BILA_42155 are exactly identical! WARNING: Sequences tr_G1QCZ0_G1QCZ0_MYOLU_59463 and tr_A0A1I7UH47_A0A1I7UH47_9PELO_1561998 are exactly identical! WARNING: Sequences tr_D8SJY6_D8SJY6_SELML_88036 and tr_D8T4N9_D8T4N9_SELML_88036 are exactly identical! WARNING: Sequences tr_G5EBG3_G5EBG3_CAEEL_6239 and tr_Q7JMS5_Q7JMS5_CAEEL_6239 are exactly identical! WARNING: Sequences tr_F6RXU0_F6RXU0_ORNAN_9258 and tr_F7GG23_F7GG23_MONDO_13616 are exactly identical! WARNING: Sequences tr_F6RXU0_F6RXU0_ORNAN_9258 and tr_K7FAT3_K7FAT3_PELSI_13735 are exactly identical! WARNING: Sequences tr_F6RXU0_F6RXU0_ORNAN_9258 and tr_G3VWZ2_G3VWZ2_SARHA_9305 are exactly identical! WARNING: Sequences tr_A0A088AV29_A0A088AV29_APIME_7460 and tr_A0A2A3ET70_A0A2A3ET70_APICC_94128 are exactly identical! WARNING: Sequences tr_I3KUK1_I3KUK1_ORENI_8128 and tr_H3D5Y4_H3D5Y4_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A0E0G0V1_A0A0E0G0V1_ORYNI_4536 and tr_A0A0E0CF99_A0A0E0CF99_9ORYZ_40149 are exactly identical! WARNING: Sequences tr_A0A0E0G0V1_A0A0E0G0V1_ORYNI_4536 and tr_A0A0E0N9I9_A0A0E0N9I9_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0G0V1_A0A0E0G0V1_ORYNI_4536 and tr_A0A0D3F0F7_A0A0D3F0F7_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_A0A0E0G0V1_A0A0E0G0V1_ORYNI_4536 and tr_A0A0D9YM20_A0A0D9YM20_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A0E0G0V1_A0A0E0G0V1_ORYNI_4536 and tr_A0A0E0JVA9_A0A0E0JVA9_ORYPU_4537 are exactly identical! WARNING: Sequences tr_A0A0E0G0V1_A0A0E0G0V1_ORYNI_4536 and tr_A0A0D9VC03_A0A0D9VC03_9ORYZ_77586 are exactly identical! WARNING: Sequences tr_A0A0E0HV27_A0A0E0HV27_ORYNI_4536 and tr_A0A0E0Q2C4_A0A0E0Q2C4_ORYRU_4529 are exactly identical! WARNING: Sequences tr_A0A0E0I1T8_A0A0E0I1T8_ORYNI_4536 and tr_B8B6H0_B8B6H0_ORYSI_39946 are exactly identical! WARNING: Sequences tr_A0A0I9N859_A0A0I9N859_BRUMA_6279 and tr_A0A044UTG3_A0A044UTG3_ONCVO_6282 are exactly identical! WARNING: Sequences tr_A0A0I9N859_A0A0I9N859_BRUMA_6279 and tr_A0A0N4TM31_A0A0N4TM31_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0I9N859_A0A0I9N859_BRUMA_6279 and tr_A0A182EF17_A0A182EF17_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A0I9N859_A0A0I9N859_BRUMA_6279 and tr_A0A1I7VW28_A0A1I7VW28_LOALO_7209 are exactly identical! WARNING: Sequences tr_E5SDI8_E5SDI8_TRISP_6334 and tr_A0A0V1DCF3_A0A0V1DCF3_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SDI8_E5SDI8_TRISP_6334 and tr_A0A0V0T337_A0A0V0T337_9BILA_144512 are exactly identical! WARNING: Sequences tr_E5SDI8_E5SDI8_TRISP_6334 and tr_A0A0V0TJC6_A0A0V0TJC6_9BILA_144512 are exactly identical! WARNING: Sequences tr_B8AHD6_B8AHD6_ORYSI_39946 and tr_I1NX34_I1NX34_ORYGL_4538 are exactly identical! WARNING: Sequences tr_B8AHD6_B8AHD6_ORYSI_39946 and sp_Q6YXY2_HACL1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_G3TFI1_G3TFI1_LOXAF_9785 and tr_A0A2Y9DEN2_A0A2Y9DEN2_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H0ZIC6_H0ZIC6_TAEGU_59729 and tr_U3KC15_U3KC15_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZIC6_H0ZIC6_TAEGU_59729 and tr_A0A151NHH3_A0A151NHH3_ALLMI_8496 are exactly identical! WARNING: Sequences tr_H0ZIC6_H0ZIC6_TAEGU_59729 and tr_A0A093QEC6_A0A093QEC6_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZIC6_H0ZIC6_TAEGU_59729 and tr_A0A087QLT7_A0A087QLT7_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0ZIC6_H0ZIC6_TAEGU_59729 and tr_A0A093H9P4_A0A093H9P4_STRCA_441894 are exactly identical! WARNING: Sequences tr_H0ZIC6_H0ZIC6_TAEGU_59729 and tr_A0A2I0MJE3_A0A2I0MJE3_COLLI_8932 are exactly identical! WARNING: Sequences tr_H0ZIC6_H0ZIC6_TAEGU_59729 and tr_A0A1U8D7N2_A0A1U8D7N2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_H0ZIC6_H0ZIC6_TAEGU_59729 and tr_A0A1V4JA56_A0A1V4JA56_PATFA_372326 are exactly identical! WARNING: Sequences tr_H0ZIC6_H0ZIC6_TAEGU_59729 and tr_A0A218UZN4_A0A218UZN4_9PASE_299123 are exactly identical! WARNING: Sequences tr_F4WGN2_F4WGN2_ACREC_103372 and tr_A0A195DXF5_A0A195DXF5_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A0E0Q8S5_A0A0E0Q8S5_ORYRU_4529 and tr_A0A0E0LL36_A0A0E0LL36_ORYPU_4537 are exactly identical! WARNING: Sequences tr_A8XA27_A8XA27_CAEBR_6238 and tr_A0A2G5UH98_A0A2G5UH98_9PELO_1611254 are exactly identical! WARNING: Sequences tr_D7KVX3_D7KVX3_ARALL_81972 and tr_R0I7W4_R0I7W4_9BRAS_81985 are exactly identical! WARNING: Sequences tr_I1KG14_I1KG14_SOYBN_3847 and tr_I1KVW9_I1KVW9_SOYBN_3847 are exactly identical! WARNING: Sequences tr_C4VBL3_C4VBL3_NOSCE_578460 and tr_A0A0F9WEX1_A0A0F9WEX1_9MICR_40302 are exactly identical! WARNING: Sequences tr_M0UI03_M0UI03_HORVV_112509 and tr_M8A2A3_M8A2A3_TRIUA_4572 are exactly identical! WARNING: Sequences tr_M0UI03_M0UI03_HORVV_112509 and tr_A0A3B6NLY3_A0A3B6NLY3_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M0UI03_M0UI03_HORVV_112509 and tr_A0A3B6PI73_A0A3B6PI73_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M0UI03_M0UI03_HORVV_112509 and tr_A0A3B6QDX4_A0A3B6QDX4_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M4CIR5_M4CIR5_BRARP_51351 and tr_A0A078F387_A0A078F387_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4CVZ2_M4CVZ2_BRARP_51351 and tr_A0A078GA15_A0A078GA15_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4CVZ2_M4CVZ2_BRARP_51351 and tr_A0A0D3ARK9_A0A0D3ARK9_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M4F1Y5_M4F1Y5_BRARP_51351 and tr_A0A0D3D1Q3_A0A0D3D1Q3_BRAOL_109376 are exactly identical! WARNING: Sequences tr_M4FE38_M4FE38_BRARP_51351 and tr_A0A078GGE6_A0A078GGE6_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4FE38_M4FE38_BRARP_51351 and tr_A0A078I198_A0A078I198_BRANA_3708 are exactly identical! WARNING: Sequences tr_M4FE38_M4FE38_BRARP_51351 and tr_A0A0D3AE36_A0A0D3AE36_BRAOL_109376 are exactly identical! WARNING: Sequences tr_W2QW13_W2QW13_PHYPN_761204 and tr_A0A0W8CWV3_A0A0W8CWV3_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2QW13_W2QW13_PHYPN_761204 and tr_W2K3H0_W2K3H0_PHYPR_4792 are exactly identical! WARNING: Sequences tr_W2RAT6_W2RAT6_PHYPN_761204 and tr_A0A0W8D5N1_A0A0W8D5N1_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2RAT6_W2RAT6_PHYPN_761204 and tr_W2LGA2_W2LGA2_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A0D3ELP8_A0A0D3ELP8_9ORYZ_65489 and tr_A0A0D9Y606_A0A0D9Y606_9ORYZ_40148 are exactly identical! WARNING: Sequences tr_A0A067FI89_A0A067FI89_CITSI_2711 and tr_V4RUQ7_V4RUQ7_9ROSI_85681 are exactly identical! WARNING: Sequences tr_A0A067FI89_A0A067FI89_CITSI_2711 and tr_A0A2H5Q0S1_A0A2H5Q0S1_CITUN_55188 are exactly identical! WARNING: Sequences tr_A0A087XGW5_A0A087XGW5_POEFO_48698 and tr_A0A2I4AJK8_A0A2I4AJK8_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A087XGW5_A0A087XGW5_POEFO_48698 and tr_A0A2I4CVS7_A0A2I4CVS7_9TELE_52670 are exactly identical! WARNING: Sequences tr_A0A078HTJ0_A0A078HTJ0_BRANA_3708 and tr_A0A0D3CAU8_A0A0D3CAU8_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078ILV2_A0A078ILV2_BRANA_3708 and tr_A0A0D3DWY5_A0A0D3DWY5_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A078IS62_A0A078IS62_BRANA_3708 and tr_A0A0D3BB14_A0A0D3BB14_BRAOL_109376 are exactly identical! WARNING: Sequences tr_A0A0D2QEH5_A0A0D2QEH5_GOSRA_29730 and tr_A0A1U8JJL1_A0A1U8JJL1_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0N8K2Q6_A0A0N8K2Q6_9TELE_113540 and tr_A0A2D0T1S8_A0A2D0T1S8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A0N8K2Q6_A0A0N8K2Q6_9TELE_113540 and tr_A0A2D0T1T1_A0A2D0T1T1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A0K0F7H8_A0A0K0F7H8_STRVS_75913 and tr_A0A0N5B8J3_A0A0N5B8J3_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0W8DUM9_A0A0W8DUM9_PHYNI_4790 and tr_W2KUZ5_W2KUZ5_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A0L9T9A8_A0A0L9T9A8_PHAAN_3914 and tr_A0A1S3VW91_A0A1S3VW91_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A0L9T9A8_A0A0L9T9A8_PHAAN_3914 and tr_A0A3Q0EP20_A0A3Q0EP20_VIGRR_3916 are exactly identical! WARNING: Sequences tr_A0A0L7R7P4_A0A0L7R7P4_9HYME_597456 and tr_A0A154PKI3_A0A154PKI3_9HYME_178035 are exactly identical! WARNING: Sequences tr_A0A0V0S7M7_A0A0V0S7M7_9BILA_6336 and tr_A0A0V1CRH0_A0A0V1CRH0_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0S7M7_A0A0V0S7M7_9BILA_6336 and tr_A0A0V0WRH6_A0A0V0WRH6_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0S7M7_A0A0V0S7M7_9BILA_6336 and tr_A0A0V0VA43_A0A0V0VA43_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0S7M7_A0A0V0S7M7_9BILA_6336 and tr_A0A0V1LGI5_A0A0V1LGI5_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0S7M7_A0A0V0S7M7_9BILA_6336 and tr_A0A0V0ZTE5_A0A0V0ZTE5_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0S7M7_A0A0V0S7M7_9BILA_6336 and tr_A0A0V0YJ43_A0A0V0YJ43_TRIPS_6337 are exactly identical! WARNING: Sequences tr_A0A0V0S7M7_A0A0V0S7M7_9BILA_6336 and tr_A0A0V1N4L9_A0A0V1N4L9_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V0S7M7_A0A0V0S7M7_9BILA_6336 and tr_A0A0V1NP30_A0A0V1NP30_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0S7M7_A0A0V0S7M7_9BILA_6336 and tr_A0A0V1I1Q7_A0A0V1I1Q7_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V0S7M7_A0A0V0S7M7_9BILA_6336 and tr_A0A0V0TMH6_A0A0V0TMH6_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0X6B7_A0A0V0X6B7_9BILA_92179 and tr_A0A0V0Z5P5_A0A0V0Z5P5_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0X6B7_A0A0V0X6B7_9BILA_92179 and tr_A0A0V1AG33_A0A0V1AG33_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1N3G7_A0A0V1N3G7_9BILA_268474 and tr_A0A0V1N3P6_A0A0V1N3P6_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V1NCF6_A0A0V1NCF6_9BILA_92180 and tr_A0A0V1NDI2_A0A0V1NDI2_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1I1H9_A0A0V1I1H9_9BILA_268475 and tr_A0A0V1I1Y2_A0A0V1I1Y2_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A151X888_A0A151X888_9HYME_64791 and tr_A0A195G070_A0A195G070_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A1S3XKF4_A0A1S3XKF4_TOBAC_4097 and tr_A0A314KZL8_A0A314KZL8_NICAT_49451 are exactly identical! WARNING: Sequences tr_A0A1S3XKF4_A0A1S3XKF4_TOBAC_4097 and tr_A0A1U7XZV3_A0A1U7XZV3_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3L5H7_A0A1S3L5H7_SALSA_8030 and tr_A0A1S3QAF7_A0A1S3QAF7_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3Q5A0_A0A1S3Q5A0_SALSA_8030 and tr_A0A060XUQ5_A0A060XUQ5_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3R9G4_A0A1S3R9G4_SALSA_8030 and tr_A0A1S3S4J5_A0A1S3S4J5_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1I7UHP8_A0A1I7UHP8_9PELO_1561998 and tr_A0A1I7UHP9_A0A1I7UHP9_9PELO_1561998 are exactly identical! WARNING: Sequences tr_A0A1D1W2C0_A0A1D1W2C0_RAMVA_947166 and tr_A0A1D1W664_A0A1D1W664_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A314L2A1_A0A314L2A1_NICAT_49451 and tr_A0A1U7XY25_A0A1U7XY25_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A2D0PVM2_A0A2D0PVM2_ICTPU_7998 and tr_A0A2D0PXB0_A0A2D0PXB0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S8R7_A0A2D0S8R7_ICTPU_7998 and tr_A0A2D0S8R9_A0A2D0S8R9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S8R7_A0A2D0S8R7_ICTPU_7998 and tr_A0A2D0S8T1_A0A2D0S8T1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S8R7_A0A2D0S8R7_ICTPU_7998 and tr_A0A2D0S9L4_A0A2D0S9L4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S8R7_A0A2D0S8R7_ICTPU_7998 and tr_A0A2D0S9M0_A0A2D0S9M0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S8R7_A0A2D0S8R7_ICTPU_7998 and tr_A0A2D0SA73_A0A2D0SA73_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1U8E264_A0A1U8E264_CAPAN_4072 and tr_A0A2G3AYE9_A0A2G3AYE9_CAPCH_80379 are exactly identical! WARNING: Sequences tr_A0A2G2ZGT3_A0A2G2ZGT3_CAPAN_4072 and tr_A0A2G3CF25_A0A2G3CF25_CAPCH_80379 are exactly identical! WARNING: Duplicate sequences found: 208 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q09472/3_mltree/Q09472.raxml.reduced.phy Alignment comprises 1 partitions and 139 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 139 / 139 Gaps: 16.66 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q09472/3_mltree/Q09472.raxml.rba Parallelization scheme autoconfig: 3 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 970 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 139 / 11120 [00:00:00] Data distribution: max. searches per worker: 7 Starting ML tree search with 20 distinct starting trees [00:00:00 -207072.169338] Initial branch length optimization [00:00:03 -159227.826424] Model parameter optimization (eps = 10.000000) [00:01:10 -157714.002272] AUTODETECT spr round 1 (radius: 5) [00:03:09 -119011.990036] AUTODETECT spr round 2 (radius: 10) [00:05:15 -96901.661476] AUTODETECT spr round 3 (radius: 15) [00:07:34 -85358.081397] AUTODETECT spr round 4 (radius: 20) [00:10:10 -78451.316892] AUTODETECT spr round 5 (radius: 25) [00:12:59 -71835.718185] SPR radius for FAST iterations: 25 (autodetect) [00:12:59 -71835.718185] Model parameter optimization (eps = 3.000000) [00:13:35 -71466.190089] FAST spr round 1 (radius: 25) [00:16:49 -56358.130388] FAST spr round 2 (radius: 25) [00:19:12 -53833.574421] FAST spr round 3 (radius: 25) [00:21:04 -53476.405965] FAST spr round 4 (radius: 25) [00:22:45 -53462.885303] FAST spr round 5 (radius: 25) [00:24:19 -53456.989583] FAST spr round 6 (radius: 25) [00:25:48 -53456.988033] Model parameter optimization (eps = 1.000000) [00:25:59 -53448.169935] SLOW spr round 1 (radius: 5) [00:27:44 -53432.396141] SLOW spr round 2 (radius: 5) [00:29:30 -53424.758986] SLOW spr round 3 (radius: 5) [00:31:17 -53424.757528] SLOW spr round 4 (radius: 10) [00:33:16 -53421.455651] SLOW spr round 5 (radius: 5) [00:35:25 -53421.158104] SLOW spr round 6 (radius: 5) [00:37:23 -53421.157716] SLOW spr round 7 (radius: 10) [00:39:23 -53421.157509] SLOW spr round 8 (radius: 15) [00:42:18 -53421.157467] SLOW spr round 9 (radius: 20) [00:46:06 -53417.027075] SLOW spr round 10 (radius: 5) [00:48:25 -53416.027225] SLOW spr round 11 (radius: 5) [00:50:26 -53416.024432] SLOW spr round 12 (radius: 10) [00:52:30 -53416.023808] SLOW spr round 13 (radius: 15) [00:55:28 -53414.962757] SLOW spr round 14 (radius: 5) [00:57:40 -53414.951570] SLOW spr round 15 (radius: 10) [00:59:54 -53414.948639] SLOW spr round 16 (radius: 15) [01:02:47 -53414.948041] SLOW spr round 17 (radius: 20) [01:06:49 -53414.195105] SLOW spr round 18 (radius: 5) [01:09:04 -53414.192966] SLOW spr round 19 (radius: 10) [01:11:24 -53414.192311] SLOW spr round 20 (radius: 15) [01:14:23 -53414.192098] SLOW spr round 21 (radius: 20) [01:18:25 -53414.192029] SLOW spr round 22 (radius: 25) [01:22:57 -53357.048183] SLOW spr round 23 (radius: 5) [01:25:16 -53355.549057] SLOW spr round 24 (radius: 5) [01:27:20 -53355.544570] SLOW spr round 25 (radius: 10) [01:29:26 -53355.542712] SLOW spr round 26 (radius: 15) [01:32:29 -53355.541448] SLOW spr round 27 (radius: 20) [01:36:31 -53355.410259] SLOW spr round 28 (radius: 5) [01:38:46 -53355.407167] SLOW spr round 29 (radius: 10) [01:41:08 -53355.407160] SLOW spr round 30 (radius: 15) [01:44:08 -53355.407155] SLOW spr round 31 (radius: 20) [01:48:11 -53355.407151] SLOW spr round 32 (radius: 25) [01:52:39 -53354.907578] SLOW spr round 33 (radius: 5) [01:54:58 -53352.752811] SLOW spr round 34 (radius: 5) [01:56:59 -53352.752231] SLOW spr round 35 (radius: 10) [01:59:06 -53352.438303] SLOW spr round 36 (radius: 5) [02:01:10 -53352.437041] SLOW spr round 37 (radius: 10) [02:03:19 -53352.436967] SLOW spr round 38 (radius: 15) [02:06:23 -53352.436960] SLOW spr round 39 (radius: 20) [02:10:29 -53352.436959] SLOW spr round 40 (radius: 25) [02:15:04 -53352.436958] Model parameter optimization (eps = 0.100000) [02:15:17] [worker #0] ML tree search #1, logLikelihood: -53352.247534 [02:15:17 -205862.317963] Initial branch length optimization [02:15:21 -158826.613919] Model parameter optimization (eps = 10.000000) [02:16:23 -157399.964119] AUTODETECT spr round 1 (radius: 5) [02:18:20 -117721.121531] AUTODETECT spr round 2 (radius: 10) [02:18:48] [worker #2] ML tree search #3, logLikelihood: -53426.960880 [02:20:25 -96428.638736] AUTODETECT spr round 3 (radius: 15) [02:22:48 -76651.722671] AUTODETECT spr round 4 (radius: 20) [02:25:41 -66956.981981] AUTODETECT spr round 5 (radius: 25) [02:28:26] [worker #1] ML tree search #2, logLikelihood: -53342.967063 [02:28:46 -64743.077908] SPR radius for FAST iterations: 25 (autodetect) [02:28:46 -64743.077908] Model parameter optimization (eps = 3.000000) [02:29:20 -64407.502745] FAST spr round 1 (radius: 25) [02:32:09 -54002.155563] FAST spr round 2 (radius: 25) [02:34:21 -53583.896451] FAST spr round 3 (radius: 25) [02:36:13 -53543.246428] FAST spr round 4 (radius: 25) [02:37:53 -53532.125608] FAST spr round 5 (radius: 25) [02:39:30 -53522.914361] FAST spr round 6 (radius: 25) [02:41:02 -53522.902445] Model parameter optimization (eps = 1.000000) [02:41:17 -53515.142893] SLOW spr round 1 (radius: 5) [02:43:04 -53507.595955] SLOW spr round 2 (radius: 5) [02:44:53 -53506.020603] SLOW spr round 3 (radius: 5) [02:46:40 -53506.018992] SLOW spr round 4 (radius: 10) [02:48:44 -53497.578074] SLOW spr round 5 (radius: 5) [02:50:57 -53496.163038] SLOW spr round 6 (radius: 5) [02:52:57 -53495.831130] SLOW spr round 7 (radius: 5) [02:54:50 -53495.830862] SLOW spr round 8 (radius: 10) [02:56:53 -53492.580764] SLOW spr round 9 (radius: 5) [02:59:07 -53490.164312] SLOW spr round 10 (radius: 5) [03:01:08 -53490.012548] SLOW spr round 11 (radius: 5) [03:03:01 -53490.012298] SLOW spr round 12 (radius: 10) [03:05:04 -53489.651200] SLOW spr round 13 (radius: 5) [03:07:15 -53489.650971] SLOW spr round 14 (radius: 10) [03:09:28 -53489.650776] SLOW spr round 15 (radius: 15) [03:12:35 -53488.008085] SLOW spr round 16 (radius: 5) [03:14:51 -53488.007170] SLOW spr round 17 (radius: 10) [03:17:12 -53488.007058] SLOW spr round 18 (radius: 15) [03:20:25 -53488.006990] SLOW spr round 19 (radius: 20) [03:24:43 -53486.356412] SLOW spr round 20 (radius: 5) [03:27:04 -53486.355861] SLOW spr round 21 (radius: 10) [03:29:31 -53485.972029] SLOW spr round 22 (radius: 5) [03:31:39 -53485.972027] SLOW spr round 23 (radius: 10) [03:33:51 -53485.972027] SLOW spr round 24 (radius: 15) [03:37:06 -53485.972027] SLOW spr round 25 (radius: 20) [03:41:21 -53485.972027] SLOW spr round 26 (radius: 25) [03:46:05 -53485.049576] SLOW spr round 27 (radius: 5) [03:48:26 -53485.047065] SLOW spr round 28 (radius: 10) [03:50:55 -53485.046051] SLOW spr round 29 (radius: 15) [03:54:06 -53485.045573] SLOW spr round 30 (radius: 20) [03:58:23 -53485.045308] SLOW spr round 31 (radius: 25) [04:03:05 -53485.045160] Model parameter optimization (eps = 0.100000) [04:03:16] [worker #0] ML tree search #4, logLikelihood: -53484.942181 [04:03:16 -205181.815520] Initial branch length optimization [04:03:21 -157912.275908] Model parameter optimization (eps = 10.000000) [04:04:20 -156513.682208] AUTODETECT spr round 1 (radius: 5) [04:06:18 -117796.907655] AUTODETECT spr round 2 (radius: 10) [04:08:24 -96402.461642] AUTODETECT spr round 3 (radius: 15) [04:10:45 -83186.933965] AUTODETECT spr round 4 (radius: 20) [04:13:18 -75781.756833] AUTODETECT spr round 5 (radius: 25) [04:16:22 -70390.215016] SPR radius for FAST iterations: 25 (autodetect) [04:16:22 -70390.215016] Model parameter optimization (eps = 3.000000) [04:16:22] [worker #1] ML tree search #5, logLikelihood: -53361.636582 [04:16:58 -70033.588524] FAST spr round 1 (radius: 25) [04:19:59 -58934.691703] FAST spr round 2 (radius: 25) [04:22:18 -54543.251896] FAST spr round 3 (radius: 25) [04:22:33] [worker #2] ML tree search #6, logLikelihood: -61227.618845 [04:24:19 -53865.251676] FAST spr round 4 (radius: 25) [04:26:07 -53713.791713] FAST spr round 5 (radius: 25) [04:27:48 -53584.124390] FAST spr round 6 (radius: 25) [04:29:24 -53583.648563] FAST spr round 7 (radius: 25) [04:30:58 -53583.648219] Model parameter optimization (eps = 1.000000) [04:31:15 -53577.672167] SLOW spr round 1 (radius: 5) [04:33:01 -53564.327421] SLOW spr round 2 (radius: 5) [04:34:50 -53558.531310] SLOW spr round 3 (radius: 5) [04:36:40 -53551.522718] SLOW spr round 4 (radius: 5) [04:38:28 -53550.674132] SLOW spr round 5 (radius: 5) [04:40:15 -53550.161958] SLOW spr round 6 (radius: 5) [04:42:01 -53550.161391] SLOW spr round 7 (radius: 10) [04:44:01 -53546.552115] SLOW spr round 8 (radius: 5) [04:46:16 -53546.118235] SLOW spr round 9 (radius: 5) [04:48:15 -53546.117572] SLOW spr round 10 (radius: 10) [04:50:20 -53546.117043] SLOW spr round 11 (radius: 15) [04:53:29 -53543.925188] SLOW spr round 12 (radius: 5) [04:55:47 -53543.316681] SLOW spr round 13 (radius: 5) [04:57:50 -53543.315879] SLOW spr round 14 (radius: 10) [04:59:56 -53543.315785] SLOW spr round 15 (radius: 15) [05:03:04 -53543.061302] SLOW spr round 16 (radius: 5) [05:05:21 -53543.060548] SLOW spr round 17 (radius: 10) [05:07:42 -53543.060506] SLOW spr round 18 (radius: 15) [05:10:45 -53541.550425] SLOW spr round 19 (radius: 5) [05:13:02 -53541.550199] SLOW spr round 20 (radius: 10) [05:15:21 -53541.550179] SLOW spr round 21 (radius: 15) [05:18:24 -53541.550172] SLOW spr round 22 (radius: 20) [05:22:45 -53536.123954] SLOW spr round 23 (radius: 5) [05:25:05 -53534.447150] SLOW spr round 24 (radius: 5) [05:27:09 -53531.540513] SLOW spr round 25 (radius: 5) [05:29:02 -53531.540513] SLOW spr round 26 (radius: 10) [05:31:04 -53531.540512] SLOW spr round 27 (radius: 15) [05:34:16 -53524.321619] SLOW spr round 28 (radius: 5) [05:36:29 -53524.319932] SLOW spr round 29 (radius: 10) [05:38:48 -53524.319919] SLOW spr round 30 (radius: 15) [05:41:54 -53524.319915] SLOW spr round 31 (radius: 20) [05:46:16 -53524.319915] SLOW spr round 32 (radius: 25) [05:51:18 -53520.639429] SLOW spr round 33 (radius: 5) [05:53:36 -53520.615155] SLOW spr round 34 (radius: 10) [05:56:08 -53498.476772] SLOW spr round 35 (radius: 5) [05:57:48] [worker #1] ML tree search #8, logLikelihood: -53338.665336 [05:58:21 -53486.652508] SLOW spr round 36 (radius: 5) [06:00:19 -53483.994576] SLOW spr round 37 (radius: 5) [06:02:11 -53483.176032] SLOW spr round 38 (radius: 5) [06:03:57 -53483.174760] SLOW spr round 39 (radius: 10) [06:05:56 -53481.276402] SLOW spr round 40 (radius: 5) [06:08:02 -53481.139961] SLOW spr round 41 (radius: 5) [06:09:58 -53481.138971] SLOW spr round 42 (radius: 10) [06:12:00 -53481.138864] SLOW spr round 43 (radius: 15) [06:15:10 -53479.772261] SLOW spr round 44 (radius: 5) [06:17:21 -53479.754863] SLOW spr round 45 (radius: 10) [06:19:37 -53479.753329] SLOW spr round 46 (radius: 15) [06:22:40 -53479.753173] SLOW spr round 47 (radius: 20) [06:27:12 -53471.407868] SLOW spr round 48 (radius: 5) [06:29:29 -53430.404888] SLOW spr round 49 (radius: 5) [06:31:30 -53430.403494] SLOW spr round 50 (radius: 10) [06:33:38 -53429.442648] SLOW spr round 51 (radius: 5) [06:34:09] [worker #2] ML tree search #9, logLikelihood: -53374.207896 [06:35:44 -53429.347336] SLOW spr round 52 (radius: 10) [06:37:54 -53429.344828] SLOW spr round 53 (radius: 15) [06:41:06 -53351.575541] SLOW spr round 54 (radius: 5) [06:43:20 -53351.572047] SLOW spr round 55 (radius: 10) [06:45:37 -53351.572045] SLOW spr round 56 (radius: 15) [06:48:47 -53351.572045] SLOW spr round 57 (radius: 20) [06:53:29 -53351.423617] SLOW spr round 58 (radius: 5) [06:55:44 -53351.423398] SLOW spr round 59 (radius: 10) [06:58:07 -53351.423390] SLOW spr round 60 (radius: 15) [07:01:17 -53351.423389] SLOW spr round 61 (radius: 20) [07:06:02 -53351.423388] SLOW spr round 62 (radius: 25) [07:11:47 -53349.522225] SLOW spr round 63 (radius: 5) [07:14:07 -53349.293205] SLOW spr round 64 (radius: 5) [07:16:10 -53349.292869] SLOW spr round 65 (radius: 10) [07:18:19 -53340.369942] SLOW spr round 66 (radius: 5) [07:20:25 -53340.367828] SLOW spr round 67 (radius: 10) [07:22:36 -53340.367695] SLOW spr round 68 (radius: 15) [07:25:49 -53340.367663] SLOW spr round 69 (radius: 20) [07:30:31 -53340.367661] SLOW spr round 70 (radius: 25) [07:36:17 -53340.367650] Model parameter optimization (eps = 0.100000) [07:36:25] [worker #0] ML tree search #7, logLikelihood: -53340.266430 [07:36:25 -208223.853118] Initial branch length optimization [07:36:29 -160884.664850] Model parameter optimization (eps = 10.000000) [07:37:45 -159452.334381] AUTODETECT spr round 1 (radius: 5) [07:39:42 -115992.702386] AUTODETECT spr round 2 (radius: 10) [07:41:46 -90498.771409] AUTODETECT spr round 3 (radius: 15) [07:44:04 -81102.569310] AUTODETECT spr round 4 (radius: 20) [07:46:31 -72255.072173] AUTODETECT spr round 5 (radius: 25) [07:49:38 -65533.596744] SPR radius for FAST iterations: 25 (autodetect) [07:49:38 -65533.596744] Model parameter optimization (eps = 3.000000) [07:50:14 -65097.247262] FAST spr round 1 (radius: 25) [07:51:58] [worker #2] ML tree search #12, logLikelihood: -53366.371006 [07:53:04 -54471.364892] FAST spr round 2 (radius: 25) [07:55:07 -53760.582639] FAST spr round 3 (radius: 25) [07:57:04 -53696.886590] FAST spr round 4 (radius: 25) [07:58:48 -53685.133825] FAST spr round 5 (radius: 25) [08:00:18 -53685.133099] Model parameter optimization (eps = 1.000000) [08:00:29 -53680.039411] SLOW spr round 1 (radius: 5) [08:02:14 -53661.146036] SLOW spr round 2 (radius: 5) [08:04:00 -53658.522135] SLOW spr round 3 (radius: 5) [08:05:47 -53657.659023] SLOW spr round 4 (radius: 5) [08:07:36 -53657.421013] SLOW spr round 5 (radius: 5) [08:09:21 -53657.420546] SLOW spr round 6 (radius: 10) [08:11:20 -53654.667384] SLOW spr round 7 (radius: 5) [08:13:30 -53654.318082] SLOW spr round 8 (radius: 5) [08:15:28 -53654.173609] SLOW spr round 9 (radius: 5) [08:17:18 -53654.173422] SLOW spr round 10 (radius: 10) [08:19:19 -53654.126751] SLOW spr round 11 (radius: 15) [08:22:26 -53651.966351] SLOW spr round 12 (radius: 5) [08:24:40 -53651.961047] SLOW spr round 13 (radius: 10) [08:26:56 -53651.960953] SLOW spr round 14 (radius: 15) [08:29:56 -53651.960928] SLOW spr round 15 (radius: 20) [08:30:59] [worker #1] ML tree search #11, logLikelihood: -53373.654795 [08:34:14 -53648.257863] SLOW spr round 16 (radius: 5) [08:36:32 -53646.345530] SLOW spr round 17 (radius: 5) [08:38:33 -53646.344197] SLOW spr round 18 (radius: 10) [08:40:38 -53645.560193] SLOW spr round 19 (radius: 5) [08:42:43 -53645.560049] SLOW spr round 20 (radius: 10) [08:44:53 -53645.560035] SLOW spr round 21 (radius: 15) [08:47:53 -53645.161488] SLOW spr round 22 (radius: 5) [08:50:05 -53645.158968] SLOW spr round 23 (radius: 10) [08:52:21 -53645.158500] SLOW spr round 24 (radius: 15) [08:55:19 -53645.158357] SLOW spr round 25 (radius: 20) [08:59:33 -53644.229802] SLOW spr round 26 (radius: 5) [09:01:49 -53644.134692] SLOW spr round 27 (radius: 10) [09:04:08 -53644.132950] SLOW spr round 28 (radius: 15) [09:07:08 -53641.609965] SLOW spr round 29 (radius: 5) [09:09:20 -53641.609236] SLOW spr round 30 (radius: 10) [09:11:36 -53641.609144] SLOW spr round 31 (radius: 15) [09:14:36 -53641.609113] SLOW spr round 32 (radius: 20) [09:18:50 -53641.609096] SLOW spr round 33 (radius: 25) [09:23:42 -53432.644140] SLOW spr round 34 (radius: 5) [09:26:03 -53394.564627] SLOW spr round 35 (radius: 5) [09:27:37] [worker #2] ML tree search #15, logLikelihood: -53727.930982 [09:28:06 -53394.564334] SLOW spr round 36 (radius: 10) [09:30:13 -53393.807257] SLOW spr round 37 (radius: 5) [09:32:22 -53393.652047] SLOW spr round 38 (radius: 5) [09:34:18 -53393.649681] SLOW spr round 39 (radius: 10) [09:36:21 -53392.948663] SLOW spr round 40 (radius: 5) [09:38:28 -53392.922955] SLOW spr round 41 (radius: 10) [09:40:38 -53392.922056] SLOW spr round 42 (radius: 15) [09:43:37 -53392.921520] SLOW spr round 43 (radius: 20) [09:47:56 -53392.921202] SLOW spr round 44 (radius: 25) [09:52:44 -53390.978400] SLOW spr round 45 (radius: 5) [09:55:03 -53390.730833] SLOW spr round 46 (radius: 5) [09:57:05 -53390.730674] SLOW spr round 47 (radius: 10) [09:59:13 -53390.668702] SLOW spr round 48 (radius: 15) [10:02:16 -53390.448626] SLOW spr round 49 (radius: 5) [10:04:30 -53364.740292] SLOW spr round 50 (radius: 5) [10:06:29 -53364.738221] SLOW spr round 51 (radius: 10) [10:08:34 -53364.738185] SLOW spr round 52 (radius: 15) [10:11:41 -53364.603789] SLOW spr round 53 (radius: 5) [10:13:54 -53364.601814] SLOW spr round 54 (radius: 10) [10:16:11 -53364.601725] SLOW spr round 55 (radius: 15) [10:19:08 -53364.601718] SLOW spr round 56 (radius: 20) [10:23:26 -53364.601584] SLOW spr round 57 (radius: 25) [10:28:15 -53364.601584] Model parameter optimization (eps = 0.100000) [10:28:27] [worker #0] ML tree search #10, logLikelihood: -53363.239757 [10:28:27 -207230.966681] Initial branch length optimization [10:28:32 -159152.548670] Model parameter optimization (eps = 10.000000) [10:29:44 -157994.130084] AUTODETECT spr round 1 (radius: 5) [10:31:44 -116493.230069] AUTODETECT spr round 2 (radius: 10) [10:33:46 -94935.878057] AUTODETECT spr round 3 (radius: 15) [10:36:03 -79740.539693] AUTODETECT spr round 4 (radius: 20) [10:38:30 -67817.146592] AUTODETECT spr round 5 (radius: 25) [10:41:13 -63793.052297] SPR radius for FAST iterations: 25 (autodetect) [10:41:13 -63793.052297] Model parameter optimization (eps = 3.000000) [10:41:54 -63473.976825] FAST spr round 1 (radius: 25) [10:44:42 -54776.162520] FAST spr round 2 (radius: 25) [10:46:55 -53834.373281] FAST spr round 3 (radius: 25) [10:48:48 -53738.564289] FAST spr round 4 (radius: 25) [10:50:29 -53733.128648] FAST spr round 5 (radius: 25) [10:52:04 -53718.922206] FAST spr round 6 (radius: 25) [10:53:38 -53718.317556] FAST spr round 7 (radius: 25) [10:55:09 -53694.193646] FAST spr round 8 (radius: 25) [10:56:38 -53694.193416] Model parameter optimization (eps = 1.000000) [10:56:56 -53676.173404] SLOW spr round 1 (radius: 5) [10:58:38 -53663.126023] SLOW spr round 2 (radius: 5) [11:00:20 -53662.218899] SLOW spr round 3 (radius: 5) [11:02:05 -53662.068556] SLOW spr round 4 (radius: 5) [11:03:51 -53662.066325] SLOW spr round 5 (radius: 10) [11:05:51 -53658.018377] SLOW spr round 6 (radius: 5) [11:08:02 -53658.004541] SLOW spr round 7 (radius: 10) [11:09:12] [worker #2] ML tree search #18, logLikelihood: -53352.629304 [11:10:14 -53657.560506] SLOW spr round 8 (radius: 5) [11:12:24 -53656.151314] SLOW spr round 9 (radius: 5) [11:14:20 -53656.144564] SLOW spr round 10 (radius: 10) [11:16:21 -53656.144396] SLOW spr round 11 (radius: 15) [11:19:32 -53651.612234] SLOW spr round 12 (radius: 5) [11:21:49 -53649.670960] SLOW spr round 13 (radius: 5) [11:23:51 -53649.670118] SLOW spr round 14 (radius: 10) [11:25:52 -53649.670050] SLOW spr round 15 (radius: 15) [11:29:02 -53649.637508] SLOW spr round 16 (radius: 20) [11:33:16 -53645.603338] SLOW spr round 17 (radius: 5) [11:35:33 -53645.475105] SLOW spr round 18 (radius: 5) [11:37:35 -53645.473554] SLOW spr round 19 (radius: 10) [11:39:39 -53645.473430] SLOW spr round 20 (radius: 15) [11:42:44 -53645.351823] SLOW spr round 21 (radius: 5) [11:44:59 -53645.351813] SLOW spr round 22 (radius: 10) [11:47:13 -53645.351808] SLOW spr round 23 (radius: 15) [11:50:16 -53645.351807] SLOW spr round 24 (radius: 20) [11:54:31 -53645.351807] SLOW spr round 25 (radius: 25) [11:59:20 -53642.323202] SLOW spr round 26 (radius: 5) [12:01:38 -53642.321873] SLOW spr round 27 (radius: 10) [12:04:01 -53642.321808] SLOW spr round 28 (radius: 15) [12:07:03 -53642.321802] SLOW spr round 29 (radius: 20) [12:11:19 -53641.730225] SLOW spr round 30 (radius: 5) [12:13:35 -53641.728908] SLOW spr round 31 (radius: 10) [12:15:55 -53641.728863] SLOW spr round 32 (radius: 15) [12:18:31] [worker #1] ML tree search #14, logLikelihood: -53326.295495 [12:18:57 -53641.728862] SLOW spr round 33 (radius: 20) [12:23:12 -53641.728861] SLOW spr round 34 (radius: 25) [12:27:57 -53641.728861] Model parameter optimization (eps = 0.100000) [12:28:02] [worker #0] ML tree search #13, logLikelihood: -53641.678708 [12:28:02 -207815.108186] Initial branch length optimization [12:28:05 -160292.386048] Model parameter optimization (eps = 10.000000) [12:29:14 -158894.006670] AUTODETECT spr round 1 (radius: 5) [12:31:13 -117463.418587] AUTODETECT spr round 2 (radius: 10) [12:33:19 -92755.971611] AUTODETECT spr round 3 (radius: 15) [12:35:37 -77380.277602] AUTODETECT spr round 4 (radius: 20) [12:38:13 -68213.978008] AUTODETECT spr round 5 (radius: 25) [12:41:13 -65772.323957] SPR radius for FAST iterations: 25 (autodetect) [12:41:13 -65772.323957] Model parameter optimization (eps = 3.000000) [12:41:45 -65251.129691] FAST spr round 1 (radius: 25) [12:44:29 -57080.311763] FAST spr round 2 (radius: 25) [12:46:37 -55268.182325] FAST spr round 3 (radius: 25) [12:48:28 -53590.274114] FAST spr round 4 (radius: 25) [12:50:09 -53429.997343] FAST spr round 5 (radius: 25) [12:51:45 -53421.143202] FAST spr round 6 (radius: 25) [12:53:18 -53395.112875] FAST spr round 7 (radius: 25) [12:54:48 -53395.112759] Model parameter optimization (eps = 1.000000) [12:55:02 -53392.027764] SLOW spr round 1 (radius: 5) [12:56:41 -53381.861364] SLOW spr round 2 (radius: 5) [12:58:23 -53381.860871] SLOW spr round 3 (radius: 10) [13:00:21 -53375.189812] SLOW spr round 4 (radius: 5) [13:02:32 -53373.307893] SLOW spr round 5 (radius: 5) [13:04:30 -53373.307750] SLOW spr round 6 (radius: 10) [13:06:30 -53371.737154] SLOW spr round 7 (radius: 5) [13:08:37 -53371.493577] SLOW spr round 8 (radius: 5) [13:10:33 -53371.491142] SLOW spr round 9 (radius: 10) [13:12:33 -53371.489808] SLOW spr round 10 (radius: 15) [13:15:38 -53365.705600] SLOW spr round 11 (radius: 5) [13:17:51 -53365.704162] SLOW spr round 12 (radius: 10) [13:20:06 -53365.703594] SLOW spr round 13 (radius: 15) [13:23:03 -53365.703346] SLOW spr round 14 (radius: 20) [13:27:16 -53360.220224] SLOW spr round 15 (radius: 5) [13:29:33 -53360.161687] SLOW spr round 16 (radius: 10) [13:31:52 -53360.161585] SLOW spr round 17 (radius: 15) [13:34:49 -53360.161563] SLOW spr round 18 (radius: 20) [13:38:56 -53360.161557] SLOW spr round 19 (radius: 25) [13:43:42 -53356.309199] SLOW spr round 20 (radius: 5) [13:46:03 -53352.641933] SLOW spr round 21 (radius: 5) [13:48:07 -53350.674583] SLOW spr round 22 (radius: 5) [13:50:02 -53346.321280] SLOW spr round 23 (radius: 5) [13:51:48 -53346.321277] SLOW spr round 24 (radius: 10) [13:53:44 -53346.321165] SLOW spr round 25 (radius: 15) [13:56:48 -53346.321161] SLOW spr round 26 (radius: 20) [14:00:45 -53346.321161] SLOW spr round 27 (radius: 25) [14:05:22 -53345.774382] SLOW spr round 28 (radius: 5) [14:07:39 -53345.774382] SLOW spr round 29 (radius: 10) [14:10:00 -53345.774382] SLOW spr round 30 (radius: 15) [14:12:52 -53345.774382] SLOW spr round 31 (radius: 20) [14:16:53 -53345.774382] SLOW spr round 32 (radius: 25) [14:21:26 -53345.774382] Model parameter optimization (eps = 0.100000) [14:21:36] [worker #0] ML tree search #16, logLikelihood: -53345.657246 [14:21:36 -204216.328311] Initial branch length optimization [14:21:39 -157858.380593] Model parameter optimization (eps = 10.000000) [14:22:33 -156570.303564] AUTODETECT spr round 1 (radius: 5) [14:24:31 -116968.027324] AUTODETECT spr round 2 (radius: 10) [14:26:33 -97540.927588] AUTODETECT spr round 3 (radius: 15) [14:28:48 -84825.834731] AUTODETECT spr round 4 (radius: 20) [14:31:26 -74689.303596] AUTODETECT spr round 5 (radius: 25) [14:34:22 -67426.373272] SPR radius for FAST iterations: 25 (autodetect) [14:34:22 -67426.373272] Model parameter optimization (eps = 3.000000) [14:34:59 -67022.706893] FAST spr round 1 (radius: 25) [14:37:55 -54257.907157] FAST spr round 2 (radius: 25) [14:40:07 -53647.155242] FAST spr round 3 (radius: 25) [14:42:03 -53403.438604] FAST spr round 4 (radius: 25) [14:43:43 -53388.115078] FAST spr round 5 (radius: 25) [14:45:17 -53386.117797] FAST spr round 6 (radius: 25) [14:46:47 -53386.104870] Model parameter optimization (eps = 1.000000) [14:47:00 -53383.855510] SLOW spr round 1 (radius: 5) [14:47:16] [worker #1] ML tree search #17, logLikelihood: -53375.168966 [14:48:42 -53371.993549] SLOW spr round 2 (radius: 5) [14:50:30 -53369.162212] SLOW spr round 3 (radius: 5) [14:52:18 -53365.456137] SLOW spr round 4 (radius: 5) [14:54:05 -53364.927878] SLOW spr round 5 (radius: 5) [14:55:49 -53364.927007] SLOW spr round 6 (radius: 10) [14:57:44 -53360.024073] SLOW spr round 7 (radius: 5) [14:59:52 -53360.022731] SLOW spr round 8 (radius: 10) [15:02:03 -53356.044824] SLOW spr round 9 (radius: 5) [15:04:12 -53351.938018] SLOW spr round 10 (radius: 5) [15:06:08 -53350.613509] SLOW spr round 11 (radius: 5) [15:07:59 -53349.272361] SLOW spr round 12 (radius: 5) [15:09:47 -53348.128165] SLOW spr round 13 (radius: 5) [15:11:33 -53347.738772] SLOW spr round 14 (radius: 5) [15:13:17 -53347.738711] SLOW spr round 15 (radius: 10) [15:15:13 -53347.738708] SLOW spr round 16 (radius: 15) [15:18:16 -53345.882305] SLOW spr round 17 (radius: 5) [15:20:28 -53345.879421] SLOW spr round 18 (radius: 10) [15:22:42 -53345.878401] SLOW spr round 19 (radius: 15) [15:25:33 -53345.878023] SLOW spr round 20 (radius: 20) [15:29:32 -53344.121172] SLOW spr round 21 (radius: 5) [15:31:47 -53344.047982] SLOW spr round 22 (radius: 10) [15:34:06 -53343.719351] SLOW spr round 23 (radius: 5) [15:36:11 -53343.719346] SLOW spr round 24 (radius: 10) [15:38:18 -53343.719345] SLOW spr round 25 (radius: 15) [15:41:14 -53343.584734] SLOW spr round 26 (radius: 5) [15:43:26 -53343.584702] SLOW spr round 27 (radius: 10) [15:45:41 -53343.584670] SLOW spr round 28 (radius: 15) [15:48:34 -53343.584638] SLOW spr round 29 (radius: 20) [15:52:34 -53343.584606] SLOW spr round 30 (radius: 25) [15:56:55 -53342.228181] SLOW spr round 31 (radius: 5) [15:59:11 -53342.225145] SLOW spr round 32 (radius: 10) [16:01:30 -53342.224390] SLOW spr round 33 (radius: 15) [16:04:24 -53342.224142] SLOW spr round 34 (radius: 20) [16:08:26 -53342.224014] SLOW spr round 35 (radius: 25) [16:12:47 -53342.223928] Model parameter optimization (eps = 0.100000) [16:12:58] [worker #0] ML tree search #19, logLikelihood: -53341.663884 [16:21:49] [worker #1] ML tree search #20, logLikelihood: -53349.558602 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.131499,0.738397) (0.036713,0.705248) (0.413718,0.664777) (0.418070,1.439900) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -53326.295495 AIC score: 110538.590990 / AICc score: 7664922.590990 / BIC score: 116240.273842 Free parameters (model + branch lengths): 1943 WARNING: Number of free parameters (K=1943) is larger than alignment size (n=139). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 2 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q09472/3_mltree/Q09472.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q09472/3_mltree/Q09472.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q09472/3_mltree/Q09472.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q09472/3_mltree/Q09472.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q09472/3_mltree/Q09472.raxml.log Analysis started: 30-Jun-2021 18:56:30 / finished: 01-Jul-2021 11:18:20 Elapsed time: 58909.913 seconds Consumed energy: 4578.306 Wh (= 23 km in an electric car, or 114 km with an e-scooter!)