RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jun-2021 18:44:00 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q08209/2_msa/Q08209_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q08209/3_mltree/Q08209.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q08209/4_raxmlng_ancestral/Q08209 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622648640 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q08209/2_msa/Q08209_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 521 sites WARNING: Sequences sp_P63328_PP2BA_MOUSE_10090 and sp_P63329_PP2BA_RAT_10116 are exactly identical! WARNING: Sequences sp_P63328_PP2BA_MOUSE_10090 and tr_A0A1U7R8U7_A0A1U7R8U7_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q27889_PP2B2_DROME_7227 and tr_B4IF93_B4IF93_DROSE_7238 are exactly identical! WARNING: Sequences sp_Q9VXF1_PP2B3_DROME_7227 and tr_B4IF94_B4IF94_DROSE_7238 are exactly identical! WARNING: Sequences tr_E3SAY8_E3SAY8_PYRTT_861557 and tr_B2WM21_B2WM21_PYRTR_426418 are exactly identical! WARNING: Sequences tr_E3SAY8_E3SAY8_PYRTT_861557 and tr_A0A2W1G422_A0A2W1G422_9PLEO_45151 are exactly identical! WARNING: Sequences tr_A0A2I3GKB6_A0A2I3GKB6_NOMLE_61853 and tr_A0A2I2YDT1_A0A2I2YDT1_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GKB6_A0A2I3GKB6_NOMLE_61853 and tr_F2Z4P5_F2Z4P5_CANLF_9615 are exactly identical! WARNING: Sequences tr_A0A2I3GKB6_A0A2I3GKB6_NOMLE_61853 and tr_A0A2I3RSP9_A0A2I3RSP9_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GKB6_A0A2I3GKB6_NOMLE_61853 and sp_Q08209_PP2BA_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GKB6_A0A2I3GKB6_NOMLE_61853 and tr_F6ZPA8_F6ZPA8_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3GKB6_A0A2I3GKB6_NOMLE_61853 and tr_A0A2I3N1U0_A0A2I3N1U0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3GKB6_A0A2I3GKB6_NOMLE_61853 and tr_A0A1U7U0U5_A0A1U7U0U5_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A2I3GKB6_A0A2I3GKB6_NOMLE_61853 and tr_A0A2K5KRZ9_A0A2K5KRZ9_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3GKB6_A0A2I3GKB6_NOMLE_61853 and tr_A0A2K6CTI2_A0A2K6CTI2_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3GKB6_A0A2I3GKB6_NOMLE_61853 and tr_A0A2R9CDE3_A0A2R9CDE3_PANPA_9597 are exactly identical! WARNING: Sequences tr_J3K8M7_J3K8M7_COCIM_246410 and tr_A0A0J6YAJ2_A0A0J6YAJ2_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6QFX4_B6QFX4_TALMQ_441960 and tr_A0A093V977_A0A093V977_TALMA_1077442 are exactly identical! WARNING: Sequences tr_G3SGD5_G3SGD5_GORGO_9595 and sp_P16298_PP2BB_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3SGD5_G3SGD5_GORGO_9595 and tr_F7GI67_F7GI67_CALJA_9483 are exactly identical! WARNING: Sequences tr_B5DX15_B5DX15_DROPS_46245 and tr_B4GN82_B4GN82_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A179UAK0_A0A179UAK0_BLAGS_559298 and tr_C5GHL7_C5GHL7_AJEDR_559297 are exactly identical! WARNING: Sequences tr_E2RJ59_E2RJ59_CANLF_9615 and tr_H0WK72_H0WK72_OTOGA_30611 are exactly identical! WARNING: Sequences tr_F9FC36_F9FC36_FUSOF_660025 and tr_W7MEE3_W7MEE3_GIBM7_334819 are exactly identical! WARNING: Sequences tr_F9FC36_F9FC36_FUSOF_660025 and tr_N4UF34_N4UF34_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9FC36_F9FC36_FUSOF_660025 and tr_X0DS77_X0DS77_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FC36_F9FC36_FUSOF_660025 and tr_A0A2H3TBU3_A0A2H3TBU3_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9FC36_F9FC36_FUSOF_660025 and tr_A0A2H3HEY5_A0A2H3HEY5_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F9FC36_F9FC36_FUSOF_660025 and tr_A0A2K0VVC4_A0A2K0VVC4_GIBNY_42673 are exactly identical! WARNING: Sequences tr_E9F819_E9F819_METRA_655844 and tr_A0A0B4I5R9_A0A0B4I5R9_METMF_1276143 are exactly identical! WARNING: Sequences tr_E9F819_E9F819_METRA_655844 and tr_A0A0D9NMG7_A0A0D9NMG7_METAN_1291518 are exactly identical! WARNING: Sequences tr_C6HEP7_C6HEP7_AJECH_544712 and tr_F0ULJ7_F0ULJ7_AJEC8_544711 are exactly identical! WARNING: Sequences tr_J5K3S1_J5K3S1_BEAB2_655819 and tr_A0A0A2VEF6_A0A0A2VEF6_BEABA_1245745 are exactly identical! WARNING: Sequences tr_A0A3B5R008_A0A3B5R008_XIPMA_8083 and tr_A0A087XKN8_A0A087XKN8_POEFO_48698 are exactly identical! WARNING: Sequences tr_G9P892_G9P892_HYPAI_452589 and tr_A0A2P4ZIF5_A0A2P4ZIF5_9HYPO_398673 are exactly identical! WARNING: Sequences tr_A2QMX2_A2QMX2_ASPNC_425011 and tr_G3Y0K0_G3Y0K0_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2QMX2_A2QMX2_ASPNC_425011 and tr_A0A319AXW9_A0A319AXW9_9EURO_1450533 are exactly identical! WARNING: Sequences tr_G7XGY8_G7XGY8_ASPKW_1033177 and tr_A0A100IE26_A0A100IE26_ASPNG_5061 are exactly identical! WARNING: Sequences tr_G7XGY8_G7XGY8_ASPKW_1033177 and tr_A0A1L9MXY1_A0A1L9MXY1_ASPTU_767770 are exactly identical! WARNING: Sequences tr_G7XGY8_G7XGY8_ASPKW_1033177 and tr_A0A317UUR0_A0A317UUR0_9EURO_1448314 are exactly identical! WARNING: Sequences tr_G3TG47_G3TG47_LOXAF_9785 and tr_G1LQC9_G1LQC9_AILME_9646 are exactly identical! WARNING: Sequences tr_G3TG47_G3TG47_LOXAF_9785 and tr_A0A2I2UWL3_A0A2I2UWL3_FELCA_9685 are exactly identical! WARNING: Sequences tr_G3TG47_G3TG47_LOXAF_9785 and tr_A0A2U3VB51_A0A2U3VB51_ODORO_9708 are exactly identical! WARNING: Sequences tr_G3TG47_G3TG47_LOXAF_9785 and tr_A0A2Y9K915_A0A2Y9K915_ENHLU_391180 are exactly identical! WARNING: Sequences tr_E3M5L2_E3M5L2_CAERE_31234 and tr_A0A261AV27_A0A261AV27_9PELO_1503980 are exactly identical! WARNING: Sequences tr_G7P601_G7P601_MACFA_9541 and tr_A0A2K5Y3D8_A0A2K5Y3D8_MANLE_9568 are exactly identical! WARNING: Sequences tr_F2PYZ2_F2PYZ2_TRIEC_559882 and tr_A0A059J138_A0A059J138_9EURO_1215338 are exactly identical! WARNING: Sequences tr_L2G3K0_L2G3K0_COLFN_1213859 and tr_T0LLV4_T0LLV4_COLGC_1237896 are exactly identical! WARNING: Sequences tr_M3XEV2_M3XEV2_FELCA_9685 and tr_A0A2U3ZMG1_A0A2U3ZMG1_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XEV2_M3XEV2_FELCA_9685 and tr_A0A2Y9FZ78_A0A2Y9FZ78_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3XEV2_M3XEV2_FELCA_9685 and tr_A0A2Y9J295_A0A2Y9J295_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M2SXX3_M2SXX3_COCSN_665912 and tr_M2U133_M2U133_COCH5_701091 are exactly identical! WARNING: Sequences tr_V2XJA8_V2XJA8_MONRO_1381753 and tr_A0A0W0EZV1_A0A0W0EZV1_9AGAR_221103 are exactly identical! WARNING: Sequences tr_A0A015J371_A0A015J371_9GLOM_1432141 and tr_A0A2I1GUU8_A0A2I1GUU8_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A015J371_A0A015J371_9GLOM_1432141 and tr_A0A2H5TJA1_A0A2H5TJA1_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A2I3LGU2_A0A2I3LGU2_PAPAN_9555 and tr_A0A2K5LUT8_A0A2K5LUT8_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3LGU2_A0A2I3LGU2_PAPAN_9555 and tr_A0A2K6C2Q2_A0A2K6C2Q2_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A094EEE1_A0A094EEE1_9PEZI_1420912 and tr_A0A1B8GLB0_A0A1B8GLB0_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A0F0IK09_A0A0F0IK09_ASPPU_1403190 and tr_A0A1S9DHA9_A0A1S9DHA9_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A0F0IK09_A0A0F0IK09_ASPPU_1403190 and tr_A0A2G7G5Q9_A0A2G7G5Q9_9EURO_656916 are exactly identical! WARNING: Sequences tr_A0A0F4GQP7_A0A0F4GQP7_9PEZI_1047168 and tr_A0A1X7S141_A0A1X7S141_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_A0A0G0A7I5_A0A0G0A7I5_TRIHA_5544 and tr_A0A2T4ALX8_A0A2T4ALX8_TRIHA_983964 are exactly identical! WARNING: Sequences tr_A0A0K0FHP4_A0A0K0FHP4_STRVS_75913 and tr_A0A0N5C4N0_A0A0N5C4N0_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0M9WIH8_A0A0M9WIH8_9EURO_229535 and tr_A0A0G4PGV5_A0A0G4PGV5_PENCA_1429867 are exactly identical! WARNING: Sequences tr_A0A0M9WIH8_A0A0M9WIH8_9EURO_229535 and tr_A0A101MD71_A0A101MD71_9EURO_48697 are exactly identical! WARNING: Sequences tr_A0A0M9WIH8_A0A0M9WIH8_9EURO_229535 and tr_A0A1V6RHP8_A0A1V6RHP8_9EURO_60172 are exactly identical! WARNING: Sequences tr_A0A0M9F3E4_A0A0M9F3E4_FUSLA_179993 and tr_A0A1B8AN36_A0A1B8AN36_FUSPO_36050 are exactly identical! WARNING: Sequences tr_A0A0A1NU87_A0A0A1NU87_9FUNG_58291 and tr_A0A2G4SQR0_A0A2G4SQR0_9FUNG_1340429 are exactly identical! WARNING: Sequences tr_A0A0A1NU87_A0A0A1NU87_9FUNG_58291 and tr_A0A367IYH0_A0A367IYH0_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A091EWE1_A0A091EWE1_CORBR_85066 and tr_A0A091IYB8_A0A091IYB8_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A091EWE1_A0A091EWE1_CORBR_85066 and tr_A0A093PNC0_A0A093PNC0_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EWE1_A0A091EWE1_CORBR_85066 and tr_A0A091W1G1_A0A091W1G1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091EWE1_A0A091EWE1_CORBR_85066 and tr_A0A093I1C3_A0A093I1C3_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091EWE1_A0A091EWE1_CORBR_85066 and tr_A0A099Z6G2_A0A099Z6G2_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A091EWE1_A0A091EWE1_CORBR_85066 and tr_A0A0A0AHN3_A0A0A0AHN3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091EWE1_A0A091EWE1_CORBR_85066 and tr_A0A093H1Y1_A0A093H1Y1_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091JDC1_A0A091JDC1_EGRGA_188379 and tr_A0A093SEV7_A0A093SEV7_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091JDC1_A0A091JDC1_EGRGA_188379 and tr_A0A091UIA9_A0A091UIA9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JDC1_A0A091JDC1_EGRGA_188379 and tr_A0A0A0AP81_A0A0A0AP81_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091JDC1_A0A091JDC1_EGRGA_188379 and tr_A0A093IEI6_A0A093IEI6_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A087RFE1_A0A087RFE1_APTFO_9233 and tr_A0A099ZXW3_A0A099ZXW3_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A093HJ21_A0A093HJ21_STRCA_441894 and tr_A0A099ZR42_A0A099ZR42_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A0V1D7Q4_A0A0V1D7Q4_TRIBR_45882 and tr_A0A0V1LLX8_A0A0V1LLX8_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1D7Q4_A0A0V1D7Q4_TRIBR_45882 and tr_A0A0V1ABH3_A0A0V1ABH3_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1D7Q4_A0A0V1D7Q4_TRIBR_45882 and tr_A0A0V1P6C5_A0A0V1P6C5_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1D7Q4_A0A0V1D7Q4_TRIBR_45882 and tr_A0A0V0UDN2_A0A0V0UDN2_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1MP39_A0A0V1MP39_9BILA_268474 and tr_A0A0V1H4E2_A0A0V1H4E2_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0P1BJT7_A0A0P1BJT7_9BASI_401625 and tr_A0A316VZ66_A0A316VZ66_9BASI_1522189 are exactly identical! WARNING: Sequences tr_A0A151WTT2_A0A151WTT2_9HYME_64791 and tr_A0A195AZB2_A0A195AZB2_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A164YRC0_A0A164YRC0_9HOMO_1314777 and tr_A0A166GE38_A0A166GE38_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A1R3RJW7_A0A1R3RJW7_ASPC5_602072 and tr_A0A317XF27_A0A317XF27_9EURO_1450535 are exactly identical! WARNING: Sequences tr_A0A1R3RJW7_A0A1R3RJW7_ASPC5_602072 and tr_A0A319ER79_A0A319ER79_9EURO_1448318 are exactly identical! WARNING: Sequences tr_A0A1Y2H483_A0A1Y2H483_9FUNG_765915 and tr_A0A1Y2HW55_A0A1Y2HW55_9FUNG_765915 are exactly identical! WARNING: Sequences tr_A0A2H3AXL4_A0A2H3AXL4_9AGAR_1076256 and tr_A0A284S5E1_A0A284S5E1_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A2S7QBG9_A0A2S7QBG9_9HELO_2070414 and tr_A0A2S7QQ15_A0A2S7QQ15_9HELO_2070412 are exactly identical! WARNING: Sequences tr_A0A2T4CA26_A0A2T4CA26_TRILO_983965 and tr_A0A2T4BK01_A0A2T4BK01_9HYPO_58853 are exactly identical! WARNING: Sequences tr_A0A2U4BEM1_A0A2U4BEM1_TURTR_9739 and tr_A0A2Y9PMW8_A0A2Y9PMW8_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2Y9EPN5_A0A2Y9EPN5_PHYCD_9755 and tr_A0A383ZCR9_A0A383ZCR9_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2V5HU71_A0A2V5HU71_9EURO_1450541 and tr_A0A2V5HBN0_A0A2V5HBN0_9EURO_1450538 are exactly identical! WARNING: Duplicate sequences found: 99 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q08209/4_raxmlng_ancestral/Q08209.raxml.reduced.phy Alignment comprises 1 partitions and 521 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 521 Gaps: 7.81 % Invariant sites: 3.65 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q08209/4_raxmlng_ancestral/Q08209.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q08209/3_mltree/Q08209.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 131 / 10480 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -100703.468706 [00:00:00 -100703.468706] Initial branch length optimization [00:00:00 -100491.351055] Model parameter optimization (eps = 0.100000) [00:00:35] Tree #1, final logLikelihood: -100164.729934 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.305342,0.277762) (0.309006,0.409350) (0.238297,1.270206) (0.147355,3.298223) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q08209/4_raxmlng_ancestral/Q08209.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q08209/4_raxmlng_ancestral/Q08209.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q08209/4_raxmlng_ancestral/Q08209.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q08209/4_raxmlng_ancestral/Q08209.raxml.log Analysis started: 02-Jun-2021 18:44:00 / finished: 02-Jun-2021 18:44:40 Elapsed time: 40.067 seconds Consumed energy: 3.262 Wh