RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 03-Jun-2021 01:57:58 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06187/2_msa/Q06187_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06187/3_mltree/Q06187.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06187/4_raxmlng_ancestral/Q06187 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622674678 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06187/2_msa/Q06187_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 659 sites WARNING: Sequences tr_B4QCQ4_B4QCQ4_DROSI_7240 and sp_Q9V9J3_SRC42_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QCQ4_B4QCQ4_DROSI_7240 and tr_B4II23_B4II23_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QR05_B4QR05_DROSI_7240 and sp_P00528_SRC64_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QR05_B4QR05_DROSI_7240 and tr_B4HU86_B4HU86_DROSE_7238 are exactly identical! WARNING: Sequences tr_F1NCD9_F1NCD9_CHICK_9031 and tr_U3IYV8_U3IYV8_ANAPL_8839 are exactly identical! WARNING: Sequences sp_P09324_YES_CHICK_9031 and tr_G1NBR9_G1NBR9_MELGA_9103 are exactly identical! WARNING: Sequences tr_G9K914_G9K914_MUSPF_9669 and tr_A0A2Y9KDK4_A0A2Y9KDK4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YUZ1_M3YUZ1_MUSPF_9669 and tr_A0A2Y9IUQ0_A0A2Y9IUQ0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_G1R7I9_G1R7I9_NOMLE_61853 and tr_G3SAG5_G3SAG5_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1R7I9_G1R7I9_NOMLE_61853 and tr_H2QYW8_H2QYW8_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R7I9_G1R7I9_NOMLE_61853 and sp_Q06187_BTK_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R7I9_G1R7I9_NOMLE_61853 and tr_F7BGK5_F7BGK5_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1R7I9_G1R7I9_NOMLE_61853 and tr_G7Q392_G7Q392_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1R7I9_G1R7I9_NOMLE_61853 and tr_A0A2I3NCH0_A0A2I3NCH0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R7I9_G1R7I9_NOMLE_61853 and tr_A0A2K6CUV5_A0A2K6CUV5_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1R7I9_G1R7I9_NOMLE_61853 and tr_A0A2K6A443_A0A2K6A443_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1R7I9_G1R7I9_NOMLE_61853 and tr_A0A2R9BQ26_A0A2R9BQ26_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2YAR4_A0A2I2YAR4_GORGO_9595 and tr_A0A2R9AFQ6_A0A2R9AFQ6_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QK47_G3QK47_GORGO_9595 and tr_A0A2J8PYX8_A0A2J8PYX8_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_F1PEX6_F1PEX6_CANLF_9615 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2I3RAJ1_A0A2I3RAJ1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2I3S7G9_A0A2I3S7G9_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_H9YUX8_H9YUX8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_D2H177_D2H177_AILME_9646 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_G7PRB8_G7PRB8_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_M3W3H7_M3W3H7_FELCA_9685 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2K5LX70_A0A2K5LX70_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2K6B7I9_A0A2K6B7I9_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2K5XNT4_A0A2K5XNT4_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2R9BA11_A0A2R9BA11_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2U3VD43_A0A2U3VD43_ODORO_9708 are exactly identical! WARNING: Sequences tr_G3R4W2_G3R4W2_GORGO_9595 and tr_A0A2Y9NX24_A0A2Y9NX24_DELLE_9749 are exactly identical! WARNING: Sequences tr_G3R9U2_G3R9U2_GORGO_9595 and tr_H2PQC0_H2PQC0_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3R9U2_G3R9U2_GORGO_9595 and tr_H2R453_H2R453_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R9U2_G3R9U2_GORGO_9595 and sp_P07948_LYN_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RRV0_G3RRV0_GORGO_9595 and sp_P42680_TEC_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3T8H3_A0A2I3T8H3_PANTR_9598 and tr_A0A2R9BH56_A0A2R9BH56_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2QTL3_H2QTL3_PANTR_9598 and sp_P42685_FRK_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QTL3_H2QTL3_PANTR_9598 and tr_A0A2R9BRU0_A0A2R9BRU0_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2R5W0_H2R5W0_PANTR_9598 and tr_A0A2R8ZDG4_A0A2R8ZDG4_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A087ZQN7_A0A087ZQN7_APIME_7460 and tr_A0A2A3E5Z4_A0A2A3E5Z4_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NHS2_A0A158NHS2_ATTCE_12957 and tr_F4WY89_F4WY89_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NHS2_A0A158NHS2_ATTCE_12957 and tr_A0A151X6R4_A0A151X6R4_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NHS2_A0A158NHS2_ATTCE_12957 and tr_A0A195EHE4_A0A195EHE4_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NHS2_A0A158NHS2_ATTCE_12957 and tr_A0A195AWS6_A0A195AWS6_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NHS2_A0A158NHS2_ATTCE_12957 and tr_A0A195FER6_A0A195FER6_9HYME_34720 are exactly identical! WARNING: Sequences tr_H0WWK4_H0WWK4_OTOGA_30611 and sp_P00519_ABL1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H0WWK4_H0WWK4_OTOGA_30611 and tr_A0A0D9RQJ3_A0A0D9RQJ3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A0K0JR93_A0A0K0JR93_BRUMA_6279 and tr_A0A0N4T1I1_A0A0N4T1I1_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A1D5QNV8_A0A1D5QNV8_MACMU_9544 and tr_A0A096NWE2_A0A096NWE2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5QNV8_A0A1D5QNV8_MACMU_9544 and tr_A0A2K6BQW6_A0A2K6BQW6_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7AH69_F7AH69_MACMU_9544 and tr_G7Q299_G7Q299_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7BV42_F7BV42_MACMU_9544 and tr_G7PBV3_G7PBV3_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7BV42_F7BV42_MACMU_9544 and tr_A0A096MX07_A0A096MX07_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7BV42_F7BV42_MACMU_9544 and tr_A0A0D9RQ35_A0A0D9RQ35_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7BV42_F7BV42_MACMU_9544 and tr_A0A2K6DNJ8_A0A2K6DNJ8_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GS57_F7GS57_MACMU_9544 and tr_G7P6R0_G7P6R0_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7GS57_F7GS57_MACMU_9544 and tr_A0A096MS14_A0A096MS14_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7GS57_F7GS57_MACMU_9544 and tr_A0A0D9RE75_A0A0D9RE75_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7GS57_F7GS57_MACMU_9544 and tr_A0A2K5LNC1_A0A2K5LNC1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7GS57_F7GS57_MACMU_9544 and tr_A0A2K6AVK0_A0A2K6AVK0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7GS57_F7GS57_MACMU_9544 and tr_A0A2K6A5N1_A0A2K6A5N1_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7H8A7_F7H8A7_MACMU_9544 and tr_A0A2K6DQ69_A0A2K6DQ69_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3SZ92_G3SZ92_LOXAF_9785 and tr_A0A2Y9DJL9_A0A2Y9DJL9_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H0Z2V6_H0Z2V6_TAEGU_59729 and tr_A0A091FAS5_A0A091FAS5_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0Z2V6_H0Z2V6_TAEGU_59729 and tr_A0A218V5K2_A0A218V5K2_9PASE_299123 are exactly identical! WARNING: Sequences tr_F4W469_F4W469_ACREC_103372 and tr_A0A151X1X9_A0A151X1X9_9HYME_64791 are exactly identical! WARNING: Sequences tr_F4W469_F4W469_ACREC_103372 and tr_A0A195E5N9_A0A195E5N9_9HYME_471704 are exactly identical! WARNING: Sequences tr_G1LS18_G1LS18_AILME_9646 and tr_A0A384CZK1_A0A384CZK1_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A096N4L2_A0A096N4L2_PAPAN_9555 and tr_A0A2K5P2X2_A0A2K5P2X2_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A096N4L2_A0A096N4L2_PAPAN_9555 and tr_A0A2K5ZXQ4_A0A2K5ZXQ4_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A151MFN4_A0A151MFN4_ALLMI_8496 and tr_A0A1U7S4W8_A0A1U7S4W8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091JHP5_A0A091JHP5_EGRGA_188379 and tr_A0A093PK85_A0A093PK85_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091JHP5_A0A091JHP5_EGRGA_188379 and tr_A0A091URD2_A0A091URD2_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JHP5_A0A091JHP5_EGRGA_188379 and tr_A0A087RGY7_A0A087RGY7_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JHP5_A0A091JHP5_EGRGA_188379 and tr_A0A093HB20_A0A093HB20_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091JHP5_A0A091JHP5_EGRGA_188379 and tr_A0A091GMR3_A0A091GMR3_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A195ET97_A0A195ET97_9HYME_34720 and tr_A0A195CLJ5_A0A195CLJ5_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A226NGR7_A0A226NGR7_CALSU_9009 and tr_A0A226NY66_A0A226NY66_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0SJ06_A0A2D0SJ06_ICTPU_7998 and tr_W5U9K8_W5U9K8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4AJ04_A0A2U4AJ04_TURTR_9739 and tr_A0A2Y9LZZ2_A0A2Y9LZZ2_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4B3N0_A0A2U4B3N0_TURTR_9739 and tr_A0A2Y9NR66_A0A2Y9NR66_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3ZYF3_A0A2U3ZYF3_ODORO_9708 and tr_A0A2U3Y201_A0A2U3Y201_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 83 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06187/4_raxmlng_ancestral/Q06187.raxml.reduced.phy Alignment comprises 1 partitions and 659 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 659 Gaps: 21.98 % Invariant sites: 0.61 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06187/4_raxmlng_ancestral/Q06187.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06187/3_mltree/Q06187.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 165 / 13200 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -174429.511686 [00:00:00 -174429.511686] Initial branch length optimization [00:00:01 -168300.959409] Model parameter optimization (eps = 0.100000) [00:00:33] Tree #1, final logLikelihood: -167985.008847 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.163486,0.187905) (0.169667,0.262916) (0.367348,0.873193) (0.299499,2.016391) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06187/4_raxmlng_ancestral/Q06187.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06187/4_raxmlng_ancestral/Q06187.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06187/4_raxmlng_ancestral/Q06187.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06187/4_raxmlng_ancestral/Q06187.raxml.log Analysis started: 03-Jun-2021 01:57:58 / finished: 03-Jun-2021 01:58:37 Elapsed time: 39.427 seconds Consumed energy: 3.039 Wh