RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 01:56:03 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06124/2_msa/Q06124_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06124/3_mltree/Q06124.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06124/4_raxmlng_ancestral/Q06124 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622674563 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06124/2_msa/Q06124_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 597 sites WARNING: Sequences tr_A0A1D5PF56_A0A1D5PF56_CHICK_9031 and tr_U3I4R6_U3I4R6_ANAPL_8839 are exactly identical! WARNING: Sequences tr_A0A1D5PF56_A0A1D5PF56_CHICK_9031 and tr_A0A2I0M2A7_A0A2I0M2A7_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A1D5PF56_A0A1D5PF56_CHICK_9031 and tr_A0A091HQ13_A0A091HQ13_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A1D5PF56_A0A1D5PF56_CHICK_9031 and tr_A0A1V4KMY5_A0A1V4KMY5_PATFA_372326 are exactly identical! WARNING: Sequences sp_P35822_PTPRK_MOUSE_10090 and tr_A0A1U8BQ30_A0A1U8BQ30_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q99M80_PTPRT_MOUSE_10090 and tr_G1PXE7_G1PXE7_MYOLU_59463 are exactly identical! WARNING: Sequences sp_Q99M80_PTPRT_MOUSE_10090 and tr_H0XB99_H0XB99_OTOGA_30611 are exactly identical! WARNING: Sequences sp_Q99M80_PTPRT_MOUSE_10090 and sp_O14522_PTPRT_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q99M80_PTPRT_MOUSE_10090 and tr_F6PVC0_F6PVC0_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3XTV4_M3XTV4_MUSPF_9669 and tr_A0A2U3WN02_A0A2U3WN02_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XTV4_M3XTV4_MUSPF_9669 and tr_A0A2Y9KGY6_A0A2Y9KGY6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3Y0F5_M3Y0F5_MUSPF_9669 and tr_A0A2Y9ISK9_A0A2Y9ISK9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3GK79_A0A2I3GK79_NOMLE_61853 and tr_H2NBZ5_H2NBZ5_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3GK79_A0A2I3GK79_NOMLE_61853 and tr_H2R3E7_H2R3E7_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GK79_A0A2I3GK79_NOMLE_61853 and tr_A0A0D9QWP4_A0A0D9QWP4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3GK79_A0A2I3GK79_NOMLE_61853 and tr_A0A2K5LWU5_A0A2K5LWU5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3GK79_A0A2I3GK79_NOMLE_61853 and tr_A0A2R8ZB11_A0A2R8ZB11_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1R5I4_G1R5I4_NOMLE_61853 and sp_P28827_PTPRM_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R5I4_G1R5I4_NOMLE_61853 and tr_A0A2R8ZLI9_A0A2R8ZLI9_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I2Z3D2_A0A2I2Z3D2_GORGO_9595 and tr_G7PEC8_G7PEC8_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I2Z3D2_A0A2I2Z3D2_GORGO_9595 and tr_A0A2K6BYF7_A0A2K6BYF7_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3SJL8_G3SJL8_GORGO_9595 and sp_Q06124_PTN11_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3SJL8_G3SJL8_GORGO_9595 and tr_A0A096N2K5_A0A096N2K5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3SJL8_G3SJL8_GORGO_9595 and tr_A0A2K6AZ82_A0A2K6AZ82_MACNE_9545 are exactly identical! WARNING: Sequences tr_B5DLU7_B5DLU7_DROPS_46245 and tr_B4H4I0_B4H4I0_DROPE_7234 are exactly identical! WARNING: Sequences tr_A0A2I3SQY6_A0A2I3SQY6_PANTR_9598 and tr_F6V5S0_F6V5S0_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3SQY6_A0A2I3SQY6_PANTR_9598 and tr_G7P370_G7P370_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3SQY6_A0A2I3SQY6_PANTR_9598 and tr_A0A2I3LW03_A0A2I3LW03_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3SQY6_A0A2I3SQY6_PANTR_9598 and tr_A0A0D9RV87_A0A0D9RV87_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3SQY6_A0A2I3SQY6_PANTR_9598 and tr_A0A2K5ZG26_A0A2K5ZG26_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3SQY6_A0A2I3SQY6_PANTR_9598 and tr_A0A2R8ZP60_A0A2R8ZP60_PANPA_9597 are exactly identical! WARNING: Sequences tr_H2RBP7_H2RBP7_PANTR_9598 and sp_P18433_PTPRA_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F6TLA3_F6TLA3_MACMU_9544 and tr_A0A2I3NAL0_A0A2I3NAL0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6TLA3_F6TLA3_MACMU_9544 and tr_A0A0D9RLM0_A0A0D9RLM0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6TLA3_F6TLA3_MACMU_9544 and tr_A0A2K5KVH8_A0A2K5KVH8_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6TLA3_F6TLA3_MACMU_9544 and tr_A0A2K6BKY6_A0A2K6BKY6_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6TLA3_F6TLA3_MACMU_9544 and tr_A0A2K5YT53_A0A2K5YT53_MANLE_9568 are exactly identical! WARNING: Sequences tr_E5SU18_E5SU18_TRISP_6334 and tr_A0A0V0ZF59_A0A0V0ZF59_9BILA_990121 are exactly identical! WARNING: Sequences tr_H0ZYB9_H0ZYB9_TAEGU_59729 and tr_A0A091ET30_A0A091ET30_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZYB9_H0ZYB9_TAEGU_59729 and tr_A0A093QA57_A0A093QA57_9PASS_328815 are exactly identical! WARNING: Sequences tr_H1A391_H1A391_TAEGU_59729 and tr_A0A091ENE8_A0A091ENE8_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3CYR3_U3CYR3_CALJA_9483 and tr_G7PWE3_G7PWE3_MACFA_9541 are exactly identical! WARNING: Sequences tr_U3CYR3_U3CYR3_CALJA_9483 and tr_A0A096N2E3_A0A096N2E3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_U3CYR3_U3CYR3_CALJA_9483 and tr_A0A2K5LED7_A0A2K5LED7_CERAT_9531 are exactly identical! WARNING: Sequences tr_U3CYR3_U3CYR3_CALJA_9483 and tr_A0A2K6C632_A0A2K6C632_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1LLN7_G1LLN7_AILME_9646 and tr_A0A2I2UR47_A0A2I2UR47_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1LLN7_G1LLN7_AILME_9646 and tr_A0A384C7G9_A0A384C7G9_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A151MY91_A0A151MY91_ALLMI_8496 and tr_A0A3Q0GDE4_A0A3Q0GDE4_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091ILL1_A0A091ILL1_EGRGA_188379 and tr_A0A091VJ01_A0A091VJ01_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091ILL1_A0A091ILL1_EGRGA_188379 and tr_A0A093HDV4_A0A093HDV4_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091IP43_A0A091IP43_EGRGA_188379 and tr_A0A091UPD6_A0A091UPD6_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091IP43_A0A091IP43_EGRGA_188379 and tr_A0A087RAY7_A0A087RAY7_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091IP43_A0A091IP43_EGRGA_188379 and tr_A0A091WL07_A0A091WL07_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091IP43_A0A091IP43_EGRGA_188379 and tr_A0A091G434_A0A091G434_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091JS23_A0A091JS23_EGRGA_188379 and tr_A0A091VVU5_A0A091VVU5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091JS23_A0A091JS23_EGRGA_188379 and tr_A0A087QSB8_A0A087QSB8_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091JS23_A0A091JS23_EGRGA_188379 and tr_A0A091WNJ6_A0A091WNJ6_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A091JS23_A0A091JS23_EGRGA_188379 and tr_A0A091FU04_A0A091FU04_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091JS23_A0A091JS23_EGRGA_188379 and tr_A0A093J036_A0A093J036_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091KAC9_A0A091KAC9_EGRGA_188379 and tr_A0A091WZA0_A0A091WZA0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A093Q8Z5_A0A093Q8Z5_9PASS_328815 and tr_A0A093HA79_A0A093HA79_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A093Q8Z5_A0A093Q8Z5_9PASS_328815 and tr_A0A0A0ASL1_A0A0A0ASL1_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091ULG9_A0A091ULG9_NIPNI_128390 and tr_A0A087RAY6_A0A087RAY6_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091ULG9_A0A091ULG9_NIPNI_128390 and tr_A0A091G073_A0A091G073_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A087R6F6_A0A087R6F6_APTFO_9233 and tr_A0A093IBD1_A0A093IBD1_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A093H2W0_A0A093H2W0_STRCA_441894 and tr_A0A0A0A901_A0A0A0A901_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A093H2W0_A0A093H2W0_STRCA_441894 and tr_A0A093H6S0_A0A093H6S0_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091VX05_A0A091VX05_OPIHO_30419 and tr_A0A091G8Y5_A0A091G8Y5_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A099Z1H6_A0A099Z1H6_TINGU_94827 and tr_A0A091I7Y5_A0A091I7Y5_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A099ZAT8_A0A099ZAT8_TINGU_94827 and tr_A0A093HED4_A0A093HED4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A1S3H313_A0A1S3H313_LINUN_7574 and tr_A0A1S3H5S6_A0A1S3H5S6_LINUN_7574 are exactly identical! WARNING: Sequences tr_A0A226N0A8_A0A226N0A8_CALSU_9009 and tr_A0A226PF42_A0A226PF42_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226NB73_A0A226NB73_CALSU_9009 and tr_A0A226P275_A0A226P275_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0PV98_A0A2D0PV98_ICTPU_7998 and tr_A0A2D0PVC0_A0A2D0PVC0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PV98_A0A2D0PV98_ICTPU_7998 and tr_A0A2D0PYE1_A0A2D0PYE1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PV98_A0A2D0PV98_ICTPU_7998 and tr_A0A2D0PYG0_A0A2D0PYG0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PV98_A0A2D0PV98_ICTPU_7998 and tr_A0A2D0PZB7_A0A2D0PZB7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PYH0_A0A2D0PYH0_ICTPU_7998 and tr_A0A2D0PZE8_A0A2D0PZE8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RUP4_A0A2D0RUP4_ICTPU_7998 and tr_W5UBA6_W5UBA6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T9D0_A0A2D0T9D0_ICTPU_7998 and tr_A0A2D0T9D3_A0A2D0T9D3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T9D0_A0A2D0T9D0_ICTPU_7998 and tr_A0A2D0TA03_A0A2D0TA03_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4CLD7_A0A2U4CLD7_TURTR_9739 and tr_A0A2Y9PNW4_A0A2Y9PNW4_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4CLD7_A0A2U4CLD7_TURTR_9739 and tr_A0A2Y9SAW7_A0A2Y9SAW7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4CLD7_A0A2U4CLD7_TURTR_9739 and tr_A0A384B8A1_A0A384B8A1_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9PY72_A0A2Y9PY72_DELLE_9749 and tr_A0A2Y9T5W4_A0A2Y9T5W4_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9PY72_A0A2Y9PY72_DELLE_9749 and tr_A0A384B0E3_A0A384B0E3_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 86 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06124/4_raxmlng_ancestral/Q06124.raxml.reduced.phy Alignment comprises 1 partitions and 597 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 597 Gaps: 24.25 % Invariant sites: 0.17 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06124/4_raxmlng_ancestral/Q06124.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06124/3_mltree/Q06124.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 150 / 12000 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -159242.120987 [00:00:00 -159242.120987] Initial branch length optimization [00:00:02 -157063.869827] Model parameter optimization (eps = 0.100000) [00:00:48] Tree #1, final logLikelihood: -156733.653537 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.148073,0.385125) (0.152285,0.396522) (0.432751,0.894928) (0.266891,1.855844) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06124/4_raxmlng_ancestral/Q06124.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06124/4_raxmlng_ancestral/Q06124.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06124/4_raxmlng_ancestral/Q06124.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q06124/4_raxmlng_ancestral/Q06124.raxml.log Analysis started: 03-Jun-2021 01:56:03 / finished: 03-Jun-2021 01:56:57 Elapsed time: 53.965 seconds Consumed energy: 3.564 Wh