RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 02-Jun-2021 18:25:28 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05823/2_msa/Q05823_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05823/3_mltree/Q05823.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05823/4_raxmlng_ancestral/Q05823 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622647528 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05823/2_msa/Q05823_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 741 sites WARNING: Sequences tr_A0A1D5PWZ8_A0A1D5PWZ8_CHICK_9031 and tr_G1NCP8_G1NCP8_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1C2Z8_E1C2Z8_CHICK_9031 and tr_G1NEG1_G1NEG1_MELGA_9103 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_A0A2I3GLQ2_A0A2I3GLQ2_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_A0A2I2Z9A1_A0A2I2Z9A1_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_F6XLN1_F6XLN1_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_K7A8P2_K7A8P2_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_H0WG51_H0WG51_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and sp_O75179_ANR17_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_F7IGM2_F7IGM2_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_G1LD79_G1LD79_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_L5KC11_L5KC11_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_A0A2I3M0R3_A0A2I3M0R3_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_A0A2K5LLZ5_A0A2K5LLZ5_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_A0A2K6BE15_A0A2K6BE15_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_A0A2K5Y1T1_A0A2K5Y1T1_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_A0A2R9BI96_A0A2R9BI96_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_A0A2U4B598_A0A2U4B598_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_A0A2U3ZLG3_A0A2U3ZLG3_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_A0A2U3XEV4_A0A2U3XEV4_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_A0A2Y9JUT7_A0A2Y9JUT7_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_A0A2Y9QCI9_A0A2Y9QCI9_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YD22_M3YD22_MUSPF_9669 and tr_A0A384CAR5_A0A384CAR5_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3Z111_M3Z111_MUSPF_9669 and tr_E2RR81_E2RR81_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Z111_M3Z111_MUSPF_9669 and tr_A0A2U3X075_A0A2U3X075_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3Z111_M3Z111_MUSPF_9669 and tr_A0A2U3Y629_A0A2U3Y629_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2I3HLI6_A0A2I3HLI6_NOMLE_61853 and tr_A0A2I3TF47_A0A2I3TF47_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3HLI6_A0A2I3HLI6_NOMLE_61853 and tr_A0A2R9CIP4_A0A2R9CIP4_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R7F9_G3R7F9_GORGO_9595 and tr_H2QQ51_H2QQ51_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R7F9_G3R7F9_GORGO_9595 and tr_A0A2R9CD42_A0A2R9CD42_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3SG36_G3SG36_GORGO_9595 and tr_K7DU15_K7DU15_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3SG36_G3SG36_GORGO_9595 and sp_Q8IWZ3_ANKH1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PBD8_H2PBD8_PONAB_9601 and sp_O15084_ANR28_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PDK0_H2PDK0_PONAB_9601 and tr_A0A3Q0CGS7_A0A3Q0CGS7_MESAU_10036 are exactly identical! WARNING: Sequences tr_H2PDK0_H2PDK0_PONAB_9601 and tr_A0A2Y9FLI9_A0A2Y9FLI9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_J9NS42_J9NS42_CANLF_9615 and tr_A0A2U3WK18_A0A2U3WK18_ODORO_9708 are exactly identical! WARNING: Sequences tr_J9NS42_J9NS42_CANLF_9615 and tr_A0A2Y9KGW3_A0A2Y9KGW3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_H2QHE5_H2QHE5_PANTR_9598 and sp_Q9ULH0_KDIS_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F7CR95_F7CR95_MONDO_13616 and tr_G3VYV3_G3VYV3_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7BNV5_F7BNV5_HORSE_9796 and tr_A0A384BYR1_A0A384BYR1_URSMA_29073 are exactly identical! WARNING: Sequences tr_W5Q672_W5Q672_SHEEP_9940 and tr_E1B7G6_E1B7G6_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5Q8W7_W5Q8W7_SHEEP_9940 and tr_E1B719_E1B719_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A158NYD8_A0A158NYD8_ATTCE_12957 and tr_A0A195AYV4_A0A195AYV4_9HYME_520822 are exactly identical! WARNING: Sequences tr_F6ZH85_F6ZH85_MACMU_9544 and tr_A0A2I3N6E9_A0A2I3N6E9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6ZH85_F6ZH85_MACMU_9544 and tr_A0A0D9RK88_A0A0D9RK88_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6ZH85_F6ZH85_MACMU_9544 and tr_A0A2K5Y5C2_A0A2K5Y5C2_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7H1K0_F7H1K0_MACMU_9544 and tr_G7P687_G7P687_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7H1K0_F7H1K0_MACMU_9544 and tr_A0A096NYI5_A0A096NYI5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F7H1K0_F7H1K0_MACMU_9544 and tr_A0A0D9S0M9_A0A0D9S0M9_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7H1K0_F7H1K0_MACMU_9544 and tr_A0A2K5MH73_A0A2K5MH73_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7H1K0_F7H1K0_MACMU_9544 and tr_A0A2K6D9V0_A0A2K6D9V0_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7H1K0_F7H1K0_MACMU_9544 and tr_A0A2K5YBY3_A0A2K5YBY3_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7HG39_F7HG39_MACMU_9544 and tr_G7PLJ9_G7PLJ9_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7HG39_F7HG39_MACMU_9544 and tr_A0A2K6E748_A0A2K6E748_MACNE_9545 are exactly identical! WARNING: Sequences tr_H0YY27_H0YY27_TAEGU_59729 and tr_A0A218VE59_A0A218VE59_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZRZ4_H0ZRZ4_TAEGU_59729 and tr_U3JVJ4_U3JVJ4_FICAL_59894 are exactly identical! WARNING: Sequences tr_F7H6C7_F7H6C7_CALJA_9483 and tr_G7NY15_G7NY15_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7H6C7_F7H6C7_CALJA_9483 and tr_A0A0D9RCK6_A0A0D9RCK6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A3Q0KN37_A0A3Q0KN37_SCHMA_6183 and tr_A0A3Q0KNE0_A0A3Q0KNE0_SCHMA_6183 are exactly identical! WARNING: Sequences tr_F1MI56_F1MI56_BOVIN_9913 and tr_A0A1U7UHY0_A0A1U7UHY0_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A0A2I3LNE2_A0A2I3LNE2_PAPAN_9555 and tr_A0A2K5NI60_A0A2K5NI60_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3LNE2_A0A2I3LNE2_PAPAN_9555 and tr_A0A2K5Z5M7_A0A2K5Z5M7_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3MIE6_A0A2I3MIE6_PAPAN_9555 and tr_A0A2K5LPM7_A0A2K5LPM7_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3MIE6_A0A2I3MIE6_PAPAN_9555 and tr_A0A2K6DJR0_A0A2K6DJR0_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A151N816_A0A151N816_ALLMI_8496 and tr_A0A1U8CUU6_A0A1U8CUU6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091EUN4_A0A091EUN4_CORBR_85066 and tr_A0A093QHA6_A0A093QHA6_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091EUN4_A0A091EUN4_CORBR_85066 and tr_A0A218UXQ1_A0A218UXQ1_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A091UIT4_A0A091UIT4_NIPNI_128390 and tr_A0A087R3L6_A0A087R3L6_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A0A0ATJ5_A0A0A0ATJ5_CHAVO_50402 and tr_A0A2I0MQP0_A0A2I0MQP0_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A0A0ATJ5_A0A0A0ATJ5_CHAVO_50402 and tr_A0A091HY46_A0A091HY46_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A2I0MH24_A0A2I0MH24_COLLI_8932 and tr_A0A1V4JV40_A0A1V4JV40_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2D0PZA0_A0A2D0PZA0_ICTPU_7998 and tr_A0A2D0Q2A0_A0A2D0Q2A0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PZA0_A0A2D0PZA0_ICTPU_7998 and tr_A0A2D0Q377_A0A2D0Q377_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RLF4_A0A2D0RLF4_ICTPU_7998 and tr_A0A2D0RLG1_A0A2D0RLG1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RLF4_A0A2D0RLF4_ICTPU_7998 and tr_A0A2D0RLG3_A0A2D0RLG3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RLF4_A0A2D0RLF4_ICTPU_7998 and tr_A0A2D0RLG7_A0A2D0RLG7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RLF4_A0A2D0RLF4_ICTPU_7998 and tr_A0A2D0RMH7_A0A2D0RMH7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RLF4_A0A2D0RLF4_ICTPU_7998 and tr_A0A2D0RN24_A0A2D0RN24_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SZG3_A0A2D0SZG3_ICTPU_7998 and tr_A0A2D0SZG8_A0A2D0SZG8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SZG3_A0A2D0SZG3_ICTPU_7998 and tr_A0A2D0SZG9_A0A2D0SZG9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SZG3_A0A2D0SZG3_ICTPU_7998 and tr_A0A2D0SZH1_A0A2D0SZH1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SZG3_A0A2D0SZG3_ICTPU_7998 and tr_A0A2D0SZW2_A0A2D0SZW2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SZG3_A0A2D0SZG3_ICTPU_7998 and tr_A0A2D0SZW7_A0A2D0SZW7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SZG3_A0A2D0SZG3_ICTPU_7998 and tr_A0A2D0T0E7_A0A2D0T0E7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SZG3_A0A2D0SZG3_ICTPU_7998 and tr_A0A2D0T0F3_A0A2D0T0F3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4AGJ9_A0A2U4AGJ9_TURTR_9739 and tr_A0A2Y9PPE1_A0A2Y9PPE1_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4AGJ9_A0A2U4AGJ9_TURTR_9739 and tr_A0A2Y9SX60_A0A2Y9SX60_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4AGJ9_A0A2U4AGJ9_TURTR_9739 and tr_A0A384B3D1_A0A384B3D1_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4AR74_A0A2U4AR74_TURTR_9739 and tr_A0A2Y9F066_A0A2Y9F066_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4AR74_A0A2U4AR74_TURTR_9739 and tr_A0A383ZBC3_A0A383ZBC3_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4B9V8_A0A2U4B9V8_TURTR_9739 and tr_A0A2Y9MJZ7_A0A2Y9MJZ7_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U3ZD56_A0A2U3ZD56_ODORO_9708 and tr_A0A2U3XJ53_A0A2U3XJ53_LEPWE_9713 are exactly identical! WARNING: Duplicate sequences found: 91 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05823/4_raxmlng_ancestral/Q05823.raxml.reduced.phy Alignment comprises 1 partitions and 741 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 741 Gaps: 40.71 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05823/4_raxmlng_ancestral/Q05823.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05823/3_mltree/Q05823.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 186 / 14880 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -310938.257385 [00:00:00 -310938.257385] Initial branch length optimization [00:00:01 -308973.272962] Model parameter optimization (eps = 0.100000) [00:00:52] Tree #1, final logLikelihood: -307920.316971 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.090359,0.331289) (0.110535,0.367926) (0.404416,0.804045) (0.394691,1.530889) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05823/4_raxmlng_ancestral/Q05823.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05823/4_raxmlng_ancestral/Q05823.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05823/4_raxmlng_ancestral/Q05823.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05823/4_raxmlng_ancestral/Q05823.raxml.log Analysis started: 02-Jun-2021 18:25:28 / finished: 02-Jun-2021 18:26:26 Elapsed time: 58.401 seconds Consumed energy: 4.471 Wh