RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 04-Jul-2021 04:38:10 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05639/2_msa/Q05639_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05639/3_mltree/Q05639 --seed 2 --threads 7 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (7 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05639/2_msa/Q05639_trimmed_msa.fasta
[00:00:00] Loaded alignment with 1001 taxa and 458 sites

WARNING: Sequences tr_B4QT88_B4QT88_DROSI_7240 and sp_P05303_EF1A2_DROME_7227 are exactly identical!
WARNING: Sequences tr_B4QT88_B4QT88_DROSI_7240 and tr_B4IJ22_B4IJ22_DROSE_7238 are exactly identical!
WARNING: Sequences sp_Q90835_EF1A_CHICK_9031 and tr_G1NM38_G1NM38_MELGA_9103 are exactly identical!
WARNING: Sequences sp_Q90835_EF1A_CHICK_9031 and tr_R0M765_R0M765_ANAPL_8839 are exactly identical!
WARNING: Sequences sp_Q90835_EF1A_CHICK_9031 and tr_A0A0Q3VY33_A0A0Q3VY33_AMAAE_12930 are exactly identical!
WARNING: Sequences sp_Q90835_EF1A_CHICK_9031 and tr_A0A091K232_A0A091K232_EGRGA_188379 are exactly identical!
WARNING: Sequences sp_Q90835_EF1A_CHICK_9031 and tr_A0A091W1T0_A0A091W1T0_NIPNI_128390 are exactly identical!
WARNING: Sequences sp_Q90835_EF1A_CHICK_9031 and tr_A0A087QVB7_A0A087QVB7_APTFO_9233 are exactly identical!
WARNING: Sequences sp_Q90835_EF1A_CHICK_9031 and tr_A0A093I3W1_A0A093I3W1_STRCA_441894 are exactly identical!
WARNING: Sequences sp_Q90835_EF1A_CHICK_9031 and tr_A0A099YZ93_A0A099YZ93_TINGU_94827 are exactly identical!
WARNING: Sequences sp_Q90835_EF1A_CHICK_9031 and tr_A0A0A0A3P7_A0A0A0A3P7_CHAVO_50402 are exactly identical!
WARNING: Sequences sp_Q90835_EF1A_CHICK_9031 and tr_A0A091HTF2_A0A091HTF2_CALAN_9244 are exactly identical!
WARNING: Sequences sp_Q90835_EF1A_CHICK_9031 and tr_A0A226N590_A0A226N590_CALSU_9009 are exactly identical!
WARNING: Sequences sp_Q90835_EF1A_CHICK_9031 and tr_A0A226NW08_A0A226NW08_COLVI_9014 are exactly identical!
WARNING: Sequences sp_P0CY35_EF1A1_CANAL_237561 and sp_Q59QD6_EF1A2_CANAL_237561 are exactly identical!
WARNING: Sequences sp_P10126_EF1A1_MOUSE_10090 and sp_P62630_EF1A1_RAT_10116 are exactly identical!
WARNING: Sequences sp_P10126_EF1A1_MOUSE_10090 and tr_I3MA74_I3MA74_ICTTR_43179 are exactly identical!
WARNING: Sequences sp_P10126_EF1A1_MOUSE_10090 and tr_A0A1S3GS28_A0A1S3GS28_DIPOR_10020 are exactly identical!
WARNING: Sequences sp_P62631_EF1A2_MOUSE_10090 and sp_P62632_EF1A2_RAT_10116 are exactly identical!
WARNING: Sequences sp_P62631_EF1A2_MOUSE_10090 and tr_A0A2Y9T619_A0A2Y9T619_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and tr_G3S518_G3S518_GORGO_9595 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and sp_Q5R4R8_EF1A1_PONAB_9601 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and sp_P68105_EF1A1_RABIT_9986 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and tr_F2Z4P4_F2Z4P4_CANLF_9615 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and sp_Q5R1X2_EF1A1_PANTR_9598 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and tr_F6UME7_F6UME7_HORSE_9796 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and tr_W5PD15_W5PD15_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and tr_W5PHA3_W5PHA3_SHEEP_9940 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and tr_H0V2B3_H0V2B3_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and sp_P68104_EF1A1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and tr_F7AW94_F7AW94_MACMU_9544 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and sp_P68103_EF1A1_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and sp_Q66RN5_EF1A1_FELCA_9685 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and tr_A0A091E1Y6_A0A091E1Y6_FUKDA_885580 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and tr_A0A0D9RNJ1_A0A0D9RNJ1_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and tr_A0A2K5N7Z5_A0A2K5N7Z5_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and tr_A0A2R9BYN3_A0A2R9BYN3_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and tr_A0A2U3XB66_A0A2U3XB66_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and tr_A0A2Y9K0L0_A0A2Y9K0L0_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_A0A2I3HHP9_A0A2I3HHP9_NOMLE_61853 and tr_A0A2Y9F799_A0A2Y9F799_PHYCD_9755 are exactly identical!
WARNING: Sequences tr_G1RGC3_G1RGC3_NOMLE_61853 and sp_Q71V39_EF1A2_RABIT_9986 are exactly identical!
WARNING: Sequences tr_G1RGC3_G1RGC3_NOMLE_61853 and tr_K7BZK0_K7BZK0_PANTR_9598 are exactly identical!
WARNING: Sequences tr_G1RGC3_G1RGC3_NOMLE_61853 and tr_H0WQB4_H0WQB4_OTOGA_30611 are exactly identical!
WARNING: Sequences tr_G1RGC3_G1RGC3_NOMLE_61853 and tr_H0W617_H0W617_CAVPO_10141 are exactly identical!
WARNING: Sequences tr_G1RGC3_G1RGC3_NOMLE_61853 and sp_Q05639_EF1A2_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G1RGC3_G1RGC3_NOMLE_61853 and tr_F7HG83_F7HG83_CALJA_9483 are exactly identical!
WARNING: Sequences tr_G1RGC3_G1RGC3_NOMLE_61853 and tr_A0A286ZNV2_A0A286ZNV2_PIG_9823 are exactly identical!
WARNING: Sequences tr_G1RGC3_G1RGC3_NOMLE_61853 and sp_Q32PH8_EF1A2_BOVIN_9913 are exactly identical!
WARNING: Sequences tr_G1RGC3_G1RGC3_NOMLE_61853 and tr_A0A096NN64_A0A096NN64_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G1RGC3_G1RGC3_NOMLE_61853 and tr_A0A0D9RV06_A0A0D9RV06_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G1RGC3_G1RGC3_NOMLE_61853 and tr_A0A2K5MKQ4_A0A2K5MKQ4_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G1RGC3_G1RGC3_NOMLE_61853 and tr_A0A2K6E9E5_A0A2K6E9E5_MACNE_9545 are exactly identical!
WARNING: Sequences tr_G1RGC3_G1RGC3_NOMLE_61853 and tr_A0A2Y9Q2J6_A0A2Y9Q2J6_DELLE_9749 are exactly identical!
WARNING: Sequences tr_G3HGY8_G3HGY8_CRIGR_10029 and tr_A0A1U8C8L7_A0A1U8C8L7_MESAU_10036 are exactly identical!
WARNING: Sequences sp_Q96WZ1_EF1A_COCIM_246410 and tr_A0A0J6YLY1_A0A0J6YLY1_COCIT_404692 are exactly identical!
WARNING: Sequences tr_B2VRU6_B2VRU6_PYRTR_426418 and tr_I7C362_I7C362_9PLEO_45151 are exactly identical!
WARNING: Sequences tr_Q297R9_Q297R9_DROPS_46245 and tr_B4G2Y2_B4G2Y2_DROPE_7234 are exactly identical!
WARNING: Sequences tr_B8NLF1_B8NLF1_ASPFN_332952 and sp_Q9Y713_EF1A_ASPOR_510516 are exactly identical!
WARNING: Sequences tr_B8NLF1_B8NLF1_ASPFN_332952 and tr_A0A1S9D967_A0A1S9D967_ASPOZ_5062 are exactly identical!
WARNING: Sequences tr_A0A179UQL4_A0A179UQL4_BLAGS_559298 and tr_C5G9Y1_C5G9Y1_AJEDR_559297 are exactly identical!
WARNING: Sequences tr_F7FTS1_F7FTS1_ORNAN_9258 and tr_G3X242_G3X242_SARHA_9305 are exactly identical!
WARNING: Sequences tr_F7FTS1_F7FTS1_ORNAN_9258 and tr_H0ZAP0_H0ZAP0_TAEGU_59729 are exactly identical!
WARNING: Sequences tr_F7FTS1_F7FTS1_ORNAN_9258 and tr_U3K725_U3K725_FICAL_59894 are exactly identical!
WARNING: Sequences tr_F7FTS1_F7FTS1_ORNAN_9258 and tr_A0A151NZD2_A0A151NZD2_ALLMI_8496 are exactly identical!
WARNING: Sequences tr_F7FTS1_F7FTS1_ORNAN_9258 and tr_A0A091EUB6_A0A091EUB6_CORBR_85066 are exactly identical!
WARNING: Sequences tr_F7FTS1_F7FTS1_ORNAN_9258 and tr_A0A091VW77_A0A091VW77_NIPNI_128390 are exactly identical!
WARNING: Sequences tr_F7FTS1_F7FTS1_ORNAN_9258 and tr_A0A087QRQ1_A0A087QRQ1_APTFO_9233 are exactly identical!
WARNING: Sequences tr_F7FTS1_F7FTS1_ORNAN_9258 and tr_A0A091GTT0_A0A091GTT0_9AVES_55661 are exactly identical!
WARNING: Sequences tr_F7FTS1_F7FTS1_ORNAN_9258 and tr_A0A0A0B1J7_A0A0A0B1J7_CHAVO_50402 are exactly identical!
WARNING: Sequences tr_F7FTS1_F7FTS1_ORNAN_9258 and tr_A0A2I0M638_A0A2I0M638_COLLI_8932 are exactly identical!
WARNING: Sequences tr_F7FTS1_F7FTS1_ORNAN_9258 and tr_A0A093H4Y2_A0A093H4Y2_DRYPU_118200 are exactly identical!
WARNING: Sequences tr_F7FTS1_F7FTS1_ORNAN_9258 and tr_A0A091I732_A0A091I732_CALAN_9244 are exactly identical!
WARNING: Sequences tr_F7FTS1_F7FTS1_ORNAN_9258 and tr_A0A1U7RKH1_A0A1U7RKH1_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_F7FTS1_F7FTS1_ORNAN_9258 and tr_A0A218USF6_A0A218USF6_9PASE_299123 are exactly identical!
WARNING: Sequences tr_F7FTS1_F7FTS1_ORNAN_9258 and tr_A0A226NKS1_A0A226NKS1_CALSU_9009 are exactly identical!
WARNING: Sequences tr_F7FTS1_F7FTS1_ORNAN_9258 and tr_A0A226PEM2_A0A226PEM2_COLVI_9014 are exactly identical!
WARNING: Sequences sp_P0CT54_EF1A2_SCHPO_284812 and sp_P0CT55_EF1A3_SCHPO_284812 are exactly identical!
WARNING: Sequences tr_F9FIK1_F9FIK1_FUSOF_660025 and tr_X0D435_X0D435_FUSOX_1089458 are exactly identical!
WARNING: Sequences tr_F9FIK1_F9FIK1_FUSOF_660025 and tr_A0A2C8CZ72_A0A2C8CZ72_FUSOX_5507 are exactly identical!
WARNING: Sequences tr_F9FIK1_F9FIK1_FUSOF_660025 and tr_A0A2C8CZL3_A0A2C8CZL3_FUSOX_327505 are exactly identical!
WARNING: Sequences tr_E9EUU8_E9EUU8_METRA_655844 and tr_A0A0D9NNI6_A0A0D9NNI6_METAN_1291518 are exactly identical!
WARNING: Sequences tr_J5K2R4_J5K2R4_BEAB2_655819 and tr_A0A2N6NMJ1_A0A2N6NMJ1_BEABA_176275 are exactly identical!
WARNING: Sequences tr_A0A087ZRE3_A0A087ZRE3_APIME_7460 and tr_A0A2A3E4S9_A0A2A3E4S9_APICC_94128 are exactly identical!
WARNING: Sequences sp_P19039_EF1A_APIME_7460 and tr_A0A2A3EMI8_A0A2A3EMI8_APICC_94128 are exactly identical!
WARNING: Sequences tr_A0A158NCQ0_A0A158NCQ0_ATTCE_12957 and tr_A0A195BYP0_A0A195BYP0_9HYME_520822 are exactly identical!
WARNING: Sequences tr_A0A158NCQ0_A0A158NCQ0_ATTCE_12957 and tr_A0A195F8Z4_A0A195F8Z4_9HYME_34720 are exactly identical!
WARNING: Sequences tr_A0A158NSV6_A0A158NSV6_ATTCE_12957 and tr_F4WSJ0_F4WSJ0_ACREC_103372 are exactly identical!
WARNING: Sequences tr_A0A0K0JHW8_A0A0K0JHW8_BRUMA_6279 and tr_A0A0N4T2V7_A0A0N4T2V7_BRUPA_6280 are exactly identical!
WARNING: Sequences tr_A0A0K0JHW8_A0A0K0JHW8_BRUMA_6279 and tr_A0A0R3QVN5_A0A0R3QVN5_9BILA_42155 are exactly identical!
WARNING: Sequences tr_G7XSQ4_G7XSQ4_ASPKW_1033177 and tr_A0A146F5L6_A0A146F5L6_9EURO_1069201 are exactly identical!
WARNING: Sequences tr_E5S5Z6_E5S5Z6_TRISP_6334 and tr_A0A0V0RUD3_A0A0V0RUD3_9BILA_6336 are exactly identical!
WARNING: Sequences tr_E5S5Z6_E5S5Z6_TRISP_6334 and tr_A0A0V0W217_A0A0V0W217_9BILA_92179 are exactly identical!
WARNING: Sequences tr_E5S5Z6_E5S5Z6_TRISP_6334 and tr_A0A0V0W045_A0A0V0W045_9BILA_181606 are exactly identical!
WARNING: Sequences tr_E5S5Z6_E5S5Z6_TRISP_6334 and tr_A0A0V1KNH4_A0A0V1KNH4_9BILA_6335 are exactly identical!
WARNING: Sequences tr_E5S5Z6_E5S5Z6_TRISP_6334 and tr_A0A0V1A6Y7_A0A0V1A6Y7_9BILA_990121 are exactly identical!
WARNING: Sequences tr_E5S5Z6_E5S5Z6_TRISP_6334 and tr_A0A0V0U950_A0A0V0U950_9BILA_144512 are exactly identical!
WARNING: Sequences tr_F4P0I2_F4P0I2_BATDJ_684364 and tr_A0A177WDE8_A0A177WDE8_BATDE_403673 are exactly identical!
WARNING: Sequences tr_G2Y5A0_G2Y5A0_BOTF4_999810 and tr_M7TBV8_M7TBV8_BOTF1_1290391 are exactly identical!
WARNING: Sequences tr_E3LCC5_E3LCC5_CAERE_31234 and tr_E3MCI0_E3MCI0_CAERE_31234 are exactly identical!
WARNING: Sequences tr_E3LCC5_E3LCC5_CAERE_31234 and tr_A0A261AU84_A0A261AU84_9PELO_1503980 are exactly identical!
WARNING: Sequences sp_P86934_EF1A1_TRYB2_185431 and sp_P86939_EF1A2_TRYB2_185431 are exactly identical!
WARNING: Sequences tr_G2J6X0_G2J6X0_CAEBR_6238 and tr_A0A2G5SWH2_A0A2G5SWH2_9PELO_1611254 are exactly identical!
WARNING: Sequences tr_F2SBY9_F2SBY9_TRIRC_559305 and tr_A0A178ETZ2_A0A178ETZ2_TRIRU_5551 are exactly identical!
WARNING: Sequences tr_M3XF66_M3XF66_FELCA_9685 and tr_A0A2U3Y2U4_A0A2U3Y2U4_LEPWE_9713 are exactly identical!
WARNING: Sequences tr_M3XF66_M3XF66_FELCA_9685 and tr_A0A2Y9IMZ5_A0A2Y9IMZ5_ENHLU_391180 are exactly identical!
WARNING: Sequences tr_R0JFX3_R0JFX3_ANAPL_8839 and tr_A0A091K8A3_A0A091K8A3_EGRGA_188379 are exactly identical!
WARNING: Sequences tr_V2X610_V2X610_MONRO_1381753 and tr_A0A0W0G2G0_A0A0W0G2G0_9AGAR_221103 are exactly identical!
WARNING: Sequences tr_A0A015JN61_A0A015JN61_9GLOM_1432141 and tr_U9TRD8_U9TRD8_RHIID_747089 are exactly identical!
WARNING: Sequences tr_A0A068REY5_A0A068REY5_9FUNG_1263082 and tr_A0A068S089_A0A068S089_9FUNG_1263082 are exactly identical!
WARNING: Sequences tr_A0A0A1PAN7_A0A0A1PAN7_9FUNG_58291 and tr_A0A367JZV5_A0A367JZV5_9FUNG_86630 are exactly identical!
WARNING: Sequences tr_A0A151MMV6_A0A151MMV6_ALLMI_8496 and tr_A0A1U8CZ62_A0A1U8CZ62_ALLSI_38654 are exactly identical!
WARNING: Sequences tr_A0A091FLF0_A0A091FLF0_CORBR_85066 and tr_A0A093PUR4_A0A093PUR4_9PASS_328815 are exactly identical!
WARNING: Sequences tr_A0A091FLF0_A0A091FLF0_CORBR_85066 and tr_A0A218UW02_A0A218UW02_9PASE_299123 are exactly identical!
WARNING: Sequences tr_A0A2I0MUJ7_A0A2I0MUJ7_COLLI_8932 and tr_A0A1V4JMH5_A0A1V4JMH5_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A0B7N1J9_A0A0B7N1J9_9FUNG_35722 and tr_A0A0B7N7D8_A0A0B7N7D8_9FUNG_35722 are exactly identical!
WARNING: Sequences tr_A0A0V1CZY6_A0A0V1CZY6_TRIBR_45882 and tr_A0A0V1NFT1_A0A0V1NFT1_9BILA_92180 are exactly identical!
WARNING: Sequences tr_A0A0V1MGQ3_A0A0V1MGQ3_9BILA_268474 and tr_A0A0V1GUL5_A0A0V1GUL5_9BILA_268475 are exactly identical!
WARNING: Sequences tr_A0A100INE1_A0A100INE1_ASPNG_5061 and tr_A0A317UMH6_A0A317UMH6_9EURO_1448314 are exactly identical!
WARNING: Sequences tr_A0A151WYI7_A0A151WYI7_9HYME_64791 and tr_A0A195EYD2_A0A195EYD2_9HYME_34720 are exactly identical!
WARNING: Sequences tr_A0A164U879_A0A164U879_9HOMO_1314777 and tr_A0A166J3D3_A0A166J3D3_9HOMO_1314776 are exactly identical!
WARNING: Sequences tr_A0A1S3S445_A0A1S3S445_SALSA_8030 and tr_A0A060WHQ2_A0A060WHQ2_ONCMY_8022 are exactly identical!
WARNING: Sequences tr_A0A1B7NBY7_A0A1B7NBY7_9HOMO_1314800 and tr_A0A1J8QDG5_A0A1J8QDG5_9HOMO_180088 are exactly identical!
WARNING: Duplicate sequences found: 122

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05639/3_mltree/Q05639.raxml.reduced.phy

Alignment comprises 1 partitions and 458 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 458 / 458
Gaps: 0.72 %
Invariant sites: 1.53 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05639/3_mltree/Q05639.raxml.rba

Parallelization scheme autoconfig: 1 worker(s) x 7 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 1001 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 66 / 5280
[00:00:00] Data distribution: max. searches per worker: 20

Starting ML tree search with 20 distinct starting trees

[00:00:00 -238493.352258] Initial branch length optimization
[00:00:03 -210691.930236] Model parameter optimization (eps = 10.000000)
[00:00:27 -210461.254442] AUTODETECT spr round 1 (radius: 5)
[00:01:58 -137625.611930] AUTODETECT spr round 2 (radius: 10)
[00:03:30 -109216.536231] AUTODETECT spr round 3 (radius: 15)
[00:05:07 -94441.484125] AUTODETECT spr round 4 (radius: 20)
[00:07:08 -84103.261330] AUTODETECT spr round 5 (radius: 25)
[00:09:21 -81508.593477] SPR radius for FAST iterations: 25 (autodetect)
[00:09:21 -81508.593477] Model parameter optimization (eps = 3.000000)
[00:09:40 -81426.101224] FAST spr round 1 (radius: 25)
[00:11:31 -70922.661923] FAST spr round 2 (radius: 25)
[00:13:09 -70282.166470] FAST spr round 3 (radius: 25)
[00:14:37 -70227.820223] FAST spr round 4 (radius: 25)
[00:15:57 -70215.791581] FAST spr round 5 (radius: 25)
[00:17:13 -70212.610795] FAST spr round 6 (radius: 25)
[00:18:24 -70212.610542] Model parameter optimization (eps = 1.000000)
[00:18:36 -70202.922433] SLOW spr round 1 (radius: 5)
[00:19:45 -70166.566911] SLOW spr round 2 (radius: 5)
[00:20:51 -70164.731601] SLOW spr round 3 (radius: 5)
[00:21:56 -70164.731538] SLOW spr round 4 (radius: 10)
[00:23:08 -70160.530016] SLOW spr round 5 (radius: 5)
[00:24:28 -70160.528423] SLOW spr round 6 (radius: 10)
[00:25:47 -70155.393488] SLOW spr round 7 (radius: 5)
[00:27:06 -70153.157891] SLOW spr round 8 (radius: 5)
[00:28:18 -70153.157871] SLOW spr round 9 (radius: 10)
[00:29:34 -70153.157865] SLOW spr round 10 (radius: 15)
[00:31:19 -70153.157858] SLOW spr round 11 (radius: 20)
[00:33:26 -70144.883566] SLOW spr round 12 (radius: 5)
[00:35:01 -70140.627427] SLOW spr round 13 (radius: 5)
[00:36:23 -70140.627396] SLOW spr round 14 (radius: 10)
[00:37:46 -70139.095804] SLOW spr round 15 (radius: 5)
[00:39:09 -70139.095416] SLOW spr round 16 (radius: 10)
[00:40:30 -70136.906594] SLOW spr round 17 (radius: 5)
[00:41:55 -70136.906406] SLOW spr round 18 (radius: 10)
[00:43:15 -70136.906405] SLOW spr round 19 (radius: 15)
[00:45:03 -70133.363565] SLOW spr round 20 (radius: 5)
[00:46:30 -70133.362414] SLOW spr round 21 (radius: 10)
[00:47:55 -70131.361330] SLOW spr round 22 (radius: 5)
[00:49:17 -70131.361312] SLOW spr round 23 (radius: 10)
[00:50:36 -70131.361312] SLOW spr round 24 (radius: 15)
[00:52:19 -70131.361312] SLOW spr round 25 (radius: 20)
[00:54:30 -70129.226553] SLOW spr round 26 (radius: 5)
[00:56:01 -70129.226540] SLOW spr round 27 (radius: 10)
[00:57:27 -70129.226540] SLOW spr round 28 (radius: 15)
[00:59:11 -70129.226540] SLOW spr round 29 (radius: 20)
[01:01:23 -70129.226540] SLOW spr round 30 (radius: 25)
[01:04:08 -70129.226540] Model parameter optimization (eps = 0.100000)

[01:04:13] ML tree search #1, logLikelihood: -70129.082505

[01:04:14 -238697.599294] Initial branch length optimization
[01:04:17 -210621.661670] Model parameter optimization (eps = 10.000000)
[01:04:30 -210507.678663] AUTODETECT spr round 1 (radius: 5)
[01:05:49 -140292.515394] AUTODETECT spr round 2 (radius: 10)
[01:07:04 -102261.639586] AUTODETECT spr round 3 (radius: 15)
[01:08:26 -90052.098232] AUTODETECT spr round 4 (radius: 20)
[01:10:08 -82773.897810] AUTODETECT spr round 5 (radius: 25)
[01:12:05 -81813.002004] SPR radius for FAST iterations: 25 (autodetect)
[01:12:05 -81813.002004] Model parameter optimization (eps = 3.000000)
[01:12:20 -81656.701735] FAST spr round 1 (radius: 25)
[01:13:51 -70876.709955] FAST spr round 2 (radius: 25)
[01:15:07 -70351.039578] FAST spr round 3 (radius: 25)
[01:16:19 -70248.255895] FAST spr round 4 (radius: 25)
[01:17:23 -70225.499324] FAST spr round 5 (radius: 25)
[01:18:24 -70224.574325] FAST spr round 6 (radius: 25)
[01:19:24 -70219.324630] FAST spr round 7 (radius: 25)
[01:20:23 -70219.324629] Model parameter optimization (eps = 1.000000)
[01:20:35 -70206.705964] SLOW spr round 1 (radius: 5)
[01:21:47 -70167.415154] SLOW spr round 2 (radius: 5)
[01:22:58 -70164.731666] SLOW spr round 3 (radius: 5)
[01:24:09 -70164.731513] SLOW spr round 4 (radius: 10)
[01:25:27 -70163.627782] SLOW spr round 5 (radius: 5)
[01:26:52 -70163.626136] SLOW spr round 6 (radius: 10)
[01:28:13 -70163.626039] SLOW spr round 7 (radius: 15)
[01:30:02 -70149.721470] SLOW spr round 8 (radius: 5)
[01:31:32 -70149.721287] SLOW spr round 9 (radius: 10)
[01:32:54 -70149.721285] SLOW spr round 10 (radius: 15)
[01:34:43 -70149.721285] SLOW spr round 11 (radius: 20)
[01:37:16 -70147.052764] SLOW spr round 12 (radius: 5)
[01:38:48 -70147.052741] SLOW spr round 13 (radius: 10)
[01:40:15 -70147.052738] SLOW spr round 14 (radius: 15)
[01:42:05 -70147.052738] SLOW spr round 15 (radius: 20)
[01:44:41 -70147.052738] SLOW spr round 16 (radius: 25)
[01:47:59 -70146.668417] SLOW spr round 17 (radius: 5)
[01:49:32 -70146.668415] SLOW spr round 18 (radius: 10)
[01:50:58 -70146.668411] SLOW spr round 19 (radius: 15)
[01:52:46 -70146.668411] SLOW spr round 20 (radius: 20)
[01:55:13 -70146.668411] SLOW spr round 21 (radius: 25)
[01:58:19 -70146.383303] SLOW spr round 22 (radius: 5)
[01:59:45 -70146.383300] SLOW spr round 23 (radius: 10)
[02:01:06 -70146.383300] SLOW spr round 24 (radius: 15)
[02:02:48 -70146.383300] SLOW spr round 25 (radius: 20)
[02:05:13 -70146.383300] SLOW spr round 26 (radius: 25)
[02:08:19 -70146.383300] Model parameter optimization (eps = 0.100000)

[02:08:23] ML tree search #2, logLikelihood: -70146.318231

[02:08:23 -238412.419437] Initial branch length optimization
[02:08:26 -211310.330120] Model parameter optimization (eps = 10.000000)
[02:08:43 -211167.358404] AUTODETECT spr round 1 (radius: 5)
[02:09:56 -137763.269332] AUTODETECT spr round 2 (radius: 10)
[02:11:07 -110386.418696] AUTODETECT spr round 3 (radius: 15)
[02:12:26 -96126.886562] AUTODETECT spr round 4 (radius: 20)
[02:14:07 -83550.817927] AUTODETECT spr round 5 (radius: 25)
[02:15:43 -81947.181690] SPR radius for FAST iterations: 25 (autodetect)
[02:15:43 -81947.181690] Model parameter optimization (eps = 3.000000)
[02:15:55 -81844.975315] FAST spr round 1 (radius: 25)
[02:17:23 -70809.151004] FAST spr round 2 (radius: 25)
[02:18:32 -70349.656915] FAST spr round 3 (radius: 25)
[02:19:38 -70285.085581] FAST spr round 4 (radius: 25)
[02:20:39 -70272.169562] FAST spr round 5 (radius: 25)
[02:21:37 -70267.605228] FAST spr round 6 (radius: 25)
[02:22:33 -70267.604992] Model parameter optimization (eps = 1.000000)
[02:22:44 -70253.108127] SLOW spr round 1 (radius: 5)
[02:23:52 -70222.274367] SLOW spr round 2 (radius: 5)
[02:25:00 -70218.883469] SLOW spr round 3 (radius: 5)
[02:26:22 -70216.514012] SLOW spr round 4 (radius: 5)
[02:27:42 -70216.513997] SLOW spr round 5 (radius: 10)
[02:29:15 -70210.274825] SLOW spr round 6 (radius: 5)
[02:30:58 -70198.962440] SLOW spr round 7 (radius: 5)
[02:32:30 -70197.638116] SLOW spr round 8 (radius: 5)
[02:33:55 -70197.637678] SLOW spr round 9 (radius: 10)
[02:35:26 -70197.317647] SLOW spr round 10 (radius: 5)
[02:37:03 -70197.317614] SLOW spr round 11 (radius: 10)
[02:38:40 -70197.317612] SLOW spr round 12 (radius: 15)
[02:40:44 -70197.317611] SLOW spr round 13 (radius: 20)
[02:43:22 -70194.721140] SLOW spr round 14 (radius: 5)
[02:45:12 -70191.881155] SLOW spr round 15 (radius: 5)
[02:46:47 -70191.881148] SLOW spr round 16 (radius: 10)
[02:48:20 -70190.205121] SLOW spr round 17 (radius: 5)
[02:49:58 -70190.205112] SLOW spr round 18 (radius: 10)
[02:51:32 -70190.205108] SLOW spr round 19 (radius: 15)
[02:53:37 -70187.411285] SLOW spr round 20 (radius: 5)
[02:55:22 -70187.411133] SLOW spr round 21 (radius: 10)
[02:57:01 -70187.411132] SLOW spr round 22 (radius: 15)
[02:59:02 -70187.411132] SLOW spr round 23 (radius: 20)
[03:01:31 -70186.939506] SLOW spr round 24 (radius: 5)
[03:03:19 -70186.939504] SLOW spr round 25 (radius: 10)
[03:05:01 -70186.939504] SLOW spr round 26 (radius: 15)
[03:07:00 -70186.939503] SLOW spr round 27 (radius: 20)
[03:09:31 -70186.939503] SLOW spr round 28 (radius: 25)
[03:12:48 -70186.858388] Model parameter optimization (eps = 0.100000)

[03:12:56] ML tree search #3, logLikelihood: -70186.329610

[03:12:56 -237488.498793] Initial branch length optimization
[03:13:02 -210715.892178] Model parameter optimization (eps = 10.000000)
[03:13:19 -210598.020639] AUTODETECT spr round 1 (radius: 5)
[03:14:52 -137383.915267] AUTODETECT spr round 2 (radius: 10)
[03:16:19 -109247.038148] AUTODETECT spr round 3 (radius: 15)
[03:17:57 -97663.041968] AUTODETECT spr round 4 (radius: 20)
[03:19:52 -88522.721783] AUTODETECT spr round 5 (radius: 25)
[03:21:56 -84437.516637] SPR radius for FAST iterations: 25 (autodetect)
[03:21:56 -84437.516637] Model parameter optimization (eps = 3.000000)
[03:22:11 -84273.358174] FAST spr round 1 (radius: 25)
[03:24:07 -72050.536637] FAST spr round 2 (radius: 25)
[03:25:39 -70434.817316] FAST spr round 3 (radius: 25)
[03:27:05 -70286.254996] FAST spr round 4 (radius: 25)
[03:28:23 -70252.018168] FAST spr round 5 (radius: 25)
[03:29:37 -70226.082360] FAST spr round 6 (radius: 25)
[03:30:48 -70213.877785] FAST spr round 7 (radius: 25)
[03:31:57 -70210.771938] FAST spr round 8 (radius: 25)
[03:33:06 -70209.250778] FAST spr round 9 (radius: 25)
[03:34:14 -70202.709571] FAST spr round 10 (radius: 25)
[03:35:22 -70202.709467] Model parameter optimization (eps = 1.000000)
[03:35:34 -70175.292203] SLOW spr round 1 (radius: 5)
[03:36:56 -70153.027700] SLOW spr round 2 (radius: 5)
[03:38:18 -70151.246998] SLOW spr round 3 (radius: 5)
[03:39:41 -70151.246783] SLOW spr round 4 (radius: 10)
[03:41:11 -70142.886593] SLOW spr round 5 (radius: 5)
[03:42:54 -70130.868078] SLOW spr round 6 (radius: 5)
[03:44:26 -70130.867542] SLOW spr round 7 (radius: 10)
[03:45:57 -70127.621657] SLOW spr round 8 (radius: 5)
[03:47:37 -70127.621626] SLOW spr round 9 (radius: 10)
[03:49:11 -70127.621611] SLOW spr round 10 (radius: 15)
[03:51:11 -70127.621596] SLOW spr round 11 (radius: 20)
[03:54:00 -70127.033192] SLOW spr round 12 (radius: 5)
[03:55:50 -70127.033184] SLOW spr round 13 (radius: 10)
[03:57:31 -70127.033180] SLOW spr round 14 (radius: 15)
[03:59:31 -70127.033176] SLOW spr round 15 (radius: 20)
[04:02:20 -70127.033172] SLOW spr round 16 (radius: 25)
[04:06:04 -70127.033168] Model parameter optimization (eps = 0.100000)

[04:06:08] ML tree search #4, logLikelihood: -70126.941302

[04:06:08 -237011.082655] Initial branch length optimization
[04:06:12 -210085.555129] Model parameter optimization (eps = 10.000000)
[04:06:32 -209843.356596] AUTODETECT spr round 1 (radius: 5)
[04:08:00 -137259.199645] AUTODETECT spr round 2 (radius: 10)
[04:09:31 -110601.297982] AUTODETECT spr round 3 (radius: 15)
[04:11:12 -95252.290041] AUTODETECT spr round 4 (radius: 20)
[04:13:00 -90780.797934] AUTODETECT spr round 5 (radius: 25)
[04:14:57 -87681.014151] SPR radius for FAST iterations: 25 (autodetect)
[04:14:57 -87681.014151] Model parameter optimization (eps = 3.000000)
[04:15:13 -87629.981061] FAST spr round 1 (radius: 25)
[04:17:04 -72424.458126] FAST spr round 2 (radius: 25)
[04:18:35 -70373.025897] FAST spr round 3 (radius: 25)
[04:19:58 -70231.965448] FAST spr round 4 (radius: 25)
[04:21:16 -70216.129682] FAST spr round 5 (radius: 25)
[04:22:28 -70212.257145] FAST spr round 6 (radius: 25)
[04:23:37 -70212.255947] Model parameter optimization (eps = 1.000000)
[04:23:47 -70193.050981] SLOW spr round 1 (radius: 5)
[04:25:14 -70177.355678] SLOW spr round 2 (radius: 5)
[04:26:39 -70171.050427] SLOW spr round 3 (radius: 5)
[04:28:03 -70166.635278] SLOW spr round 4 (radius: 5)
[04:29:23 -70164.189150] SLOW spr round 5 (radius: 5)
[04:30:44 -70164.189095] SLOW spr round 6 (radius: 10)
[04:32:13 -70161.614782] SLOW spr round 7 (radius: 5)
[04:33:53 -70160.307023] SLOW spr round 8 (radius: 5)
[04:35:22 -70160.307016] SLOW spr round 9 (radius: 10)
[04:36:56 -70157.319149] SLOW spr round 10 (radius: 5)
[04:38:32 -70157.319143] SLOW spr round 11 (radius: 10)
[04:40:07 -70157.319142] SLOW spr round 12 (radius: 15)
[04:42:11 -70157.058874] SLOW spr round 13 (radius: 5)
[04:43:55 -70157.058873] SLOW spr round 14 (radius: 10)
[04:45:34 -70157.028554] SLOW spr round 15 (radius: 15)
[04:47:35 -70155.009934] SLOW spr round 16 (radius: 5)
[04:49:19 -70155.009934] SLOW spr round 17 (radius: 10)
[04:50:58 -70155.009934] SLOW spr round 18 (radius: 15)
[04:53:00 -70155.009933] SLOW spr round 19 (radius: 20)
[04:55:37 -70154.726181] SLOW spr round 20 (radius: 5)
[04:57:24 -70154.725923] SLOW spr round 21 (radius: 10)
[04:59:06 -70154.725922] SLOW spr round 22 (radius: 15)
[05:01:06 -70154.725922] SLOW spr round 23 (radius: 20)
[05:03:40 -70154.725922] SLOW spr round 24 (radius: 25)
[05:06:51 -70154.725922] Model parameter optimization (eps = 0.100000)

[05:06:56] ML tree search #5, logLikelihood: -70154.611772

[05:06:56 -236898.227247] Initial branch length optimization
[05:06:59 -209579.542010] Model parameter optimization (eps = 10.000000)
[05:07:19 -209358.275578] AUTODETECT spr round 1 (radius: 5)
[05:08:46 -138116.118652] AUTODETECT spr round 2 (radius: 10)
[05:10:12 -110766.710786] AUTODETECT spr round 3 (radius: 15)
[05:11:45 -98178.562689] AUTODETECT spr round 4 (radius: 20)
[05:13:36 -88805.283796] AUTODETECT spr round 5 (radius: 25)
[05:15:31 -83229.422361] SPR radius for FAST iterations: 25 (autodetect)
[05:15:31 -83229.422361] Model parameter optimization (eps = 3.000000)
[05:15:47 -83131.788078] FAST spr round 1 (radius: 25)
[05:17:35 -71143.030824] FAST spr round 2 (radius: 25)
[05:19:09 -70347.841981] FAST spr round 3 (radius: 25)
[05:20:28 -70306.924839] FAST spr round 4 (radius: 25)
[05:21:44 -70299.641908] FAST spr round 5 (radius: 25)
[05:22:54 -70299.641555] Model parameter optimization (eps = 1.000000)
[05:23:09 -70288.117933] SLOW spr round 1 (radius: 5)
[05:24:35 -70260.815359] SLOW spr round 2 (radius: 5)
[05:26:01 -70245.000668] SLOW spr round 3 (radius: 5)
[05:27:22 -70244.873140] SLOW spr round 4 (radius: 5)
[05:28:41 -70244.873130] SLOW spr round 5 (radius: 10)
[05:30:11 -70224.191928] SLOW spr round 6 (radius: 5)
[05:31:52 -70207.066598] SLOW spr round 7 (radius: 5)
[05:33:21 -70207.066569] SLOW spr round 8 (radius: 10)
[05:34:53 -70197.032308] SLOW spr round 9 (radius: 5)
[05:36:32 -70193.963586] SLOW spr round 10 (radius: 5)
[05:38:01 -70192.291087] SLOW spr round 11 (radius: 5)
[05:39:24 -70192.291083] SLOW spr round 12 (radius: 10)
[05:40:55 -70188.707925] SLOW spr round 13 (radius: 5)
[05:42:32 -70188.707923] SLOW spr round 14 (radius: 10)
[05:44:08 -70181.118112] SLOW spr round 15 (radius: 5)
[05:45:45 -70178.040109] SLOW spr round 16 (radius: 5)
[05:47:12 -70178.039909] SLOW spr round 17 (radius: 10)
[05:48:42 -70178.039908] SLOW spr round 18 (radius: 15)
[05:50:43 -70175.381283] SLOW spr round 19 (radius: 5)
[05:52:28 -70175.381282] SLOW spr round 20 (radius: 10)
[05:54:05 -70173.686508] SLOW spr round 21 (radius: 5)
[05:55:40 -70173.686508] SLOW spr round 22 (radius: 10)
[05:57:12 -70173.686508] SLOW spr round 23 (radius: 15)
[05:59:11 -70173.686508] SLOW spr round 24 (radius: 20)
[06:01:49 -70173.274293] SLOW spr round 25 (radius: 5)
[06:03:35 -70173.274155] SLOW spr round 26 (radius: 10)
[06:05:15 -70173.274154] SLOW spr round 27 (radius: 15)
[06:07:14 -70173.274152] SLOW spr round 28 (radius: 20)
[06:09:51 -70173.274152] SLOW spr round 29 (radius: 25)
[06:13:07 -70173.274148] Model parameter optimization (eps = 0.100000)

[06:13:13] ML tree search #6, logLikelihood: -70173.107243

[06:13:13 -236961.710860] Initial branch length optimization
[06:13:17 -209812.734308] Model parameter optimization (eps = 10.000000)
[06:13:31 -209697.795269] AUTODETECT spr round 1 (radius: 5)
[06:14:59 -138523.061424] AUTODETECT spr round 2 (radius: 10)
[06:16:28 -109694.366613] AUTODETECT spr round 3 (radius: 15)
[06:18:06 -97725.344825] AUTODETECT spr round 4 (radius: 20)
[06:19:57 -92729.114578] AUTODETECT spr round 5 (radius: 25)
[06:21:47 -89402.577145] SPR radius for FAST iterations: 25 (autodetect)
[06:21:47 -89402.577145] Model parameter optimization (eps = 3.000000)
[06:22:03 -89232.253261] FAST spr round 1 (radius: 25)
[06:24:00 -71880.275959] FAST spr round 2 (radius: 25)
[06:25:34 -70733.008378] FAST spr round 3 (radius: 25)
[06:26:58 -70289.102248] FAST spr round 4 (radius: 25)
[06:28:18 -70252.850111] FAST spr round 5 (radius: 25)
[06:29:30 -70252.849867] Model parameter optimization (eps = 1.000000)
[06:29:42 -70246.534635] SLOW spr round 1 (radius: 5)
[06:31:08 -70220.833087] SLOW spr round 2 (radius: 5)
[06:32:27 -70198.176102] SLOW spr round 3 (radius: 5)
[06:33:34 -70191.726565] SLOW spr round 4 (radius: 5)
[06:34:40 -70190.267219] SLOW spr round 5 (radius: 5)
[06:35:48 -70184.851700] SLOW spr round 6 (radius: 5)
[06:37:00 -70184.583971] SLOW spr round 7 (radius: 5)
[06:38:10 -70184.583961] SLOW spr round 8 (radius: 10)
[06:39:30 -70177.563099] SLOW spr round 9 (radius: 5)
[06:40:58 -70176.685289] SLOW spr round 10 (radius: 5)
[06:42:18 -70175.876221] SLOW spr round 11 (radius: 5)
[06:43:33 -70172.307421] SLOW spr round 12 (radius: 5)
[06:44:46 -70171.492442] SLOW spr round 13 (radius: 5)
[06:45:57 -70171.492405] SLOW spr round 14 (radius: 10)
[06:47:15 -70171.492392] SLOW spr round 15 (radius: 15)
[06:49:00 -70170.457601] SLOW spr round 16 (radius: 5)
[06:50:31 -70170.457213] SLOW spr round 17 (radius: 10)
[06:51:58 -70170.457210] SLOW spr round 18 (radius: 15)
[06:53:42 -70170.163137] SLOW spr round 19 (radius: 5)
[06:55:13 -70170.163131] SLOW spr round 20 (radius: 10)
[06:56:40 -70170.163130] SLOW spr round 21 (radius: 15)
[06:58:23 -70170.163130] SLOW spr round 22 (radius: 20)
[07:00:30 -70164.768034] SLOW spr round 23 (radius: 5)
[07:02:05 -70155.539278] SLOW spr round 24 (radius: 5)
[07:03:28 -70155.539270] SLOW spr round 25 (radius: 10)
[07:04:51 -70155.539270] SLOW spr round 26 (radius: 15)
[07:06:36 -70155.538100] SLOW spr round 27 (radius: 20)
[07:08:42 -70152.693931] SLOW spr round 28 (radius: 5)
[07:10:16 -70152.693930] SLOW spr round 29 (radius: 10)
[07:11:45 -70152.693928] SLOW spr round 30 (radius: 15)
[07:13:28 -70152.693928] SLOW spr round 31 (radius: 20)
[07:15:35 -70152.257197] SLOW spr round 32 (radius: 5)
[07:17:09 -70151.252758] SLOW spr round 33 (radius: 5)
[07:18:33 -70151.252756] SLOW spr round 34 (radius: 10)
[07:19:55 -70151.252726] SLOW spr round 35 (radius: 15)
[07:21:39 -70151.252726] SLOW spr round 36 (radius: 20)
[07:23:45 -70151.252726] SLOW spr round 37 (radius: 25)
[07:26:10 -70151.252726] Model parameter optimization (eps = 0.100000)

[07:26:19] ML tree search #7, logLikelihood: -70150.237417

[07:26:19 -237370.670964] Initial branch length optimization
[07:26:22 -209516.245780] Model parameter optimization (eps = 10.000000)
[07:26:38 -209298.972764] AUTODETECT spr round 1 (radius: 5)
[07:27:55 -138814.934342] AUTODETECT spr round 2 (radius: 10)
[07:29:14 -113549.682774] AUTODETECT spr round 3 (radius: 15)
[07:30:40 -98098.245240] AUTODETECT spr round 4 (radius: 20)
[07:32:12 -89248.579283] AUTODETECT spr round 5 (radius: 25)
[07:33:57 -85052.437211] SPR radius for FAST iterations: 25 (autodetect)
[07:33:57 -85052.437211] Model parameter optimization (eps = 3.000000)
[07:34:09 -84976.431240] FAST spr round 1 (radius: 25)
[07:35:44 -71430.960627] FAST spr round 2 (radius: 25)
[07:37:05 -70418.671676] FAST spr round 3 (radius: 25)
[07:38:20 -70307.027576] FAST spr round 4 (radius: 25)
[07:39:28 -70294.458261] FAST spr round 5 (radius: 25)
[07:40:31 -70294.457851] Model parameter optimization (eps = 1.000000)
[07:40:42 -70286.132370] SLOW spr round 1 (radius: 5)
[07:42:00 -70255.806667] SLOW spr round 2 (radius: 5)
[07:43:14 -70251.069219] SLOW spr round 3 (radius: 5)
[07:44:26 -70249.350989] SLOW spr round 4 (radius: 5)
[07:45:37 -70249.350872] SLOW spr round 5 (radius: 10)
[07:46:55 -70247.411814] SLOW spr round 6 (radius: 5)
[07:48:21 -70247.411691] SLOW spr round 7 (radius: 10)
[07:49:45 -70246.045527] SLOW spr round 8 (radius: 5)
[07:51:10 -70244.923259] SLOW spr round 9 (radius: 5)
[07:52:27 -70244.923257] SLOW spr round 10 (radius: 10)
[07:53:47 -70244.923255] SLOW spr round 11 (radius: 15)
[07:55:40 -70224.603635] SLOW spr round 12 (radius: 5)
[07:57:13 -70224.603387] SLOW spr round 13 (radius: 10)
[07:58:41 -70224.603386] SLOW spr round 14 (radius: 15)
[08:00:31 -70220.364782] SLOW spr round 15 (radius: 5)
[08:02:03 -70220.364771] SLOW spr round 16 (radius: 10)
[08:03:31 -70220.364769] SLOW spr round 17 (radius: 15)
[08:05:22 -70220.364769] SLOW spr round 18 (radius: 20)
[08:07:49 -70215.240543] SLOW spr round 19 (radius: 5)
[08:09:23 -70214.220223] SLOW spr round 20 (radius: 5)
[08:10:47 -70214.220028] SLOW spr round 21 (radius: 10)
[08:12:10 -70214.220028] SLOW spr round 22 (radius: 15)
[08:14:01 -70214.220028] SLOW spr round 23 (radius: 20)
[08:16:25 -70214.201914] SLOW spr round 24 (radius: 25)
[08:19:22 -70214.201914] Model parameter optimization (eps = 0.100000)

[08:19:28] ML tree search #8, logLikelihood: -70214.153868

[08:19:28 -237696.971009] Initial branch length optimization
[08:19:32 -210955.210965] Model parameter optimization (eps = 10.000000)
[08:19:54 -210752.794962] AUTODETECT spr round 1 (radius: 5)
[08:21:10 -135581.186415] AUTODETECT spr round 2 (radius: 10)
[08:22:25 -104218.871458] AUTODETECT spr round 3 (radius: 15)
[08:23:49 -92070.613837] AUTODETECT spr round 4 (radius: 20)
[08:25:21 -88078.344299] AUTODETECT spr round 5 (radius: 25)
[08:27:17 -84860.790142] SPR radius for FAST iterations: 25 (autodetect)
[08:27:17 -84860.790142] Model parameter optimization (eps = 3.000000)
[08:27:29 -84755.569471] FAST spr round 1 (radius: 25)
[08:29:08 -70976.520327] FAST spr round 2 (radius: 25)
[08:30:28 -70304.474047] FAST spr round 3 (radius: 25)
[08:31:40 -70243.480621] FAST spr round 4 (radius: 25)
[08:32:46 -70233.424415] FAST spr round 5 (radius: 25)
[08:33:48 -70232.381597] FAST spr round 6 (radius: 25)
[08:34:49 -70232.381385] Model parameter optimization (eps = 1.000000)
[08:34:58 -70213.397311] SLOW spr round 1 (radius: 5)
[08:36:14 -70195.709840] SLOW spr round 2 (radius: 5)
[08:37:27 -70164.700559] SLOW spr round 3 (radius: 5)
[08:38:40 -70160.122862] SLOW spr round 4 (radius: 5)
[08:39:52 -70160.122652] SLOW spr round 5 (radius: 10)
[08:41:12 -70152.249284] SLOW spr round 6 (radius: 5)
[08:42:41 -70146.443881] SLOW spr round 7 (radius: 5)
[08:44:01 -70146.443867] SLOW spr round 8 (radius: 10)
[08:45:20 -70146.443860] SLOW spr round 9 (radius: 15)
[08:47:06 -70146.443858] SLOW spr round 10 (radius: 20)
[08:49:22 -70146.443857] SLOW spr round 11 (radius: 25)
[08:52:23 -70145.245828] SLOW spr round 12 (radius: 5)
[08:53:58 -70145.245526] SLOW spr round 13 (radius: 10)
[08:55:28 -70145.245520] SLOW spr round 14 (radius: 15)
[08:57:11 -70145.245520] SLOW spr round 15 (radius: 20)
[08:59:22 -70145.245520] SLOW spr round 16 (radius: 25)
[09:02:03 -70145.245519] Model parameter optimization (eps = 0.100000)

[09:02:10] ML tree search #9, logLikelihood: -70144.649843

[09:02:10 -236553.333281] Initial branch length optimization
[09:02:13 -209733.387821] Model parameter optimization (eps = 10.000000)
[09:02:33 -209418.652436] AUTODETECT spr round 1 (radius: 5)
[09:03:43 -137572.920618] AUTODETECT spr round 2 (radius: 10)
[09:04:53 -103304.011175] AUTODETECT spr round 3 (radius: 15)
[09:06:10 -89934.915963] AUTODETECT spr round 4 (radius: 20)
[09:07:39 -82754.729160] AUTODETECT spr round 5 (radius: 25)
[09:09:14 -81371.574990] SPR radius for FAST iterations: 25 (autodetect)
[09:09:14 -81371.574990] Model parameter optimization (eps = 3.000000)
[09:09:24 -81298.369066] FAST spr round 1 (radius: 25)
[09:10:55 -70694.792876] FAST spr round 2 (radius: 25)
[09:12:08 -70292.442806] FAST spr round 3 (radius: 25)
[09:13:14 -70257.961649] FAST spr round 4 (radius: 25)
[09:14:15 -70251.463784] FAST spr round 5 (radius: 25)
[09:15:12 -70251.463484] Model parameter optimization (eps = 1.000000)
[09:15:20 -70245.943238] SLOW spr round 1 (radius: 5)
[09:16:29 -70186.663287] SLOW spr round 2 (radius: 5)
[09:17:37 -70176.368064] SLOW spr round 3 (radius: 5)
[09:18:44 -70174.032646] SLOW spr round 4 (radius: 5)
[09:19:49 -70174.031702] SLOW spr round 5 (radius: 10)
[09:21:01 -70161.258230] SLOW spr round 6 (radius: 5)
[09:22:21 -70161.257369] SLOW spr round 7 (radius: 10)
[09:23:37 -70161.257308] SLOW spr round 8 (radius: 15)
[09:25:12 -70160.706028] SLOW spr round 9 (radius: 5)
[09:26:37 -70160.705706] SLOW spr round 10 (radius: 10)
[09:27:56 -70160.705704] SLOW spr round 11 (radius: 15)
[09:29:31 -70160.705702] SLOW spr round 12 (radius: 20)
[09:31:28 -70156.862283] SLOW spr round 13 (radius: 5)
[09:32:54 -70156.347974] SLOW spr round 14 (radius: 5)
[09:34:11 -70154.659199] SLOW spr round 15 (radius: 5)
[09:35:22 -70153.493433] SLOW spr round 16 (radius: 5)
[09:36:30 -70153.493082] SLOW spr round 17 (radius: 10)
[09:37:41 -70153.492412] SLOW spr round 18 (radius: 15)
[09:39:16 -70153.492408] SLOW spr round 19 (radius: 20)
[09:41:10 -70152.465612] SLOW spr round 20 (radius: 5)
[09:42:36 -70152.465564] SLOW spr round 21 (radius: 10)
[09:43:55 -70152.465444] SLOW spr round 22 (radius: 15)
[09:45:28 -70152.465313] SLOW spr round 23 (radius: 20)
[09:47:23 -70152.465311] SLOW spr round 24 (radius: 25)
[09:49:32 -70152.465309] Model parameter optimization (eps = 0.100000)

[09:49:37] ML tree search #10, logLikelihood: -70152.343754

[09:49:37 -236993.875575] Initial branch length optimization
[09:49:40 -209002.209065] Model parameter optimization (eps = 10.000000)
[09:49:56 -208775.107350] AUTODETECT spr round 1 (radius: 5)
[09:51:07 -140984.985738] AUTODETECT spr round 2 (radius: 10)
[09:52:17 -110588.638263] AUTODETECT spr round 3 (radius: 15)
[09:53:35 -97842.508775] AUTODETECT spr round 4 (radius: 20)
[09:55:02 -85458.759634] AUTODETECT spr round 5 (radius: 25)
[09:56:48 -82640.869083] SPR radius for FAST iterations: 25 (autodetect)
[09:56:48 -82640.869083] Model parameter optimization (eps = 3.000000)
[09:56:52 -82634.389559] FAST spr round 1 (radius: 25)
[09:58:23 -72128.177049] FAST spr round 2 (radius: 25)
[09:59:40 -71507.695378] FAST spr round 3 (radius: 25)
[10:00:47 -71434.044698] FAST spr round 4 (radius: 25)
[10:01:49 -71412.462427] FAST spr round 5 (radius: 25)
[10:02:56 -71023.175722] FAST spr round 6 (radius: 25)
[10:04:04 -70662.335800] FAST spr round 7 (radius: 25)
[10:05:02 -70400.328565] FAST spr round 8 (radius: 25)
[10:06:00 -70370.884726] FAST spr round 9 (radius: 25)
[10:06:56 -70336.107765] FAST spr round 10 (radius: 25)
[10:07:52 -70324.271564] FAST spr round 11 (radius: 25)
[10:08:46 -70324.269507] Model parameter optimization (eps = 1.000000)
[10:08:49 -70323.794795] SLOW spr round 1 (radius: 5)
[10:09:56 -70295.031932] SLOW spr round 2 (radius: 5)
[10:11:02 -70287.285632] SLOW spr round 3 (radius: 5)
[10:12:06 -70286.856357] SLOW spr round 4 (radius: 5)
[10:13:10 -70286.856214] SLOW spr round 5 (radius: 10)
[10:14:20 -70279.899956] SLOW spr round 6 (radius: 5)
[10:15:41 -70279.899915] SLOW spr round 7 (radius: 10)
[10:16:57 -70277.205656] SLOW spr round 8 (radius: 5)
[10:18:16 -70276.723992] SLOW spr round 9 (radius: 5)
[10:19:28 -70276.723985] SLOW spr round 10 (radius: 10)
[10:20:40 -70276.723980] SLOW spr round 11 (radius: 15)
[10:22:17 -70268.641056] SLOW spr round 12 (radius: 5)
[10:23:42 -70264.517138] SLOW spr round 13 (radius: 5)
[10:24:58 -70264.517137] SLOW spr round 14 (radius: 10)
[10:26:11 -70264.517136] SLOW spr round 15 (radius: 15)
[10:27:47 -70256.447125] SLOW spr round 16 (radius: 5)
[10:29:12 -70256.447086] SLOW spr round 17 (radius: 10)
[10:30:30 -70256.447086] SLOW spr round 18 (radius: 15)
[10:32:09 -70252.846145] SLOW spr round 19 (radius: 5)
[10:33:35 -70251.931372] SLOW spr round 20 (radius: 5)
[10:34:50 -70251.707469] SLOW spr round 21 (radius: 5)
[10:36:00 -70251.707465] SLOW spr round 22 (radius: 10)
[10:37:12 -70249.134833] SLOW spr round 23 (radius: 5)
[10:38:31 -70249.134778] SLOW spr round 24 (radius: 10)
[10:39:46 -70249.134777] SLOW spr round 25 (radius: 15)
[10:41:23 -70248.663251] SLOW spr round 26 (radius: 5)
[10:42:47 -70248.663250] SLOW spr round 27 (radius: 10)
[10:44:06 -70248.663250] SLOW spr round 28 (radius: 15)
[10:45:43 -70248.663249] SLOW spr round 29 (radius: 20)
[10:47:52 -70244.248071] SLOW spr round 30 (radius: 5)
[10:49:19 -70244.181936] SLOW spr round 31 (radius: 10)
[10:50:40 -70244.181898] SLOW spr round 32 (radius: 15)
[10:52:17 -70244.181830] SLOW spr round 33 (radius: 20)
[10:54:25 -70244.181829] SLOW spr round 34 (radius: 25)
[10:57:01 -70237.596749] SLOW spr round 35 (radius: 5)
[10:58:28 -70237.596714] SLOW spr round 36 (radius: 10)
[10:59:50 -70237.596701] SLOW spr round 37 (radius: 15)
[11:01:26 -70237.596700] SLOW spr round 38 (radius: 20)
[11:03:33 -70237.596700] SLOW spr round 39 (radius: 25)
[11:06:08 -70237.596700] Model parameter optimization (eps = 0.100000)

[11:06:10] ML tree search #11, logLikelihood: -70237.594805

[11:06:10 -237898.933640] Initial branch length optimization
[11:06:14 -210301.993484] Model parameter optimization (eps = 10.000000)
[11:06:30 -210081.484035] AUTODETECT spr round 1 (radius: 5)
[11:07:40 -139600.913930] AUTODETECT spr round 2 (radius: 10)
[11:08:52 -108814.002773] AUTODETECT spr round 3 (radius: 15)
[11:10:11 -95962.867132] AUTODETECT spr round 4 (radius: 20)
[11:11:41 -83882.246917] AUTODETECT spr round 5 (radius: 25)
[11:13:21 -81171.783706] SPR radius for FAST iterations: 25 (autodetect)
[11:13:21 -81171.783706] Model parameter optimization (eps = 3.000000)
[11:13:36 -81083.371259] FAST spr round 1 (radius: 25)
[11:15:04 -70770.825466] FAST spr round 2 (radius: 25)
[11:16:15 -70314.309590] FAST spr round 3 (radius: 25)
[11:17:18 -70257.591307] FAST spr round 4 (radius: 25)
[11:18:18 -70253.919081] FAST spr round 5 (radius: 25)
[11:19:15 -70253.918632] Model parameter optimization (eps = 1.000000)
[11:19:24 -70247.876264] SLOW spr round 1 (radius: 5)
[11:20:33 -70198.875533] SLOW spr round 2 (radius: 5)
[11:21:41 -70184.663542] SLOW spr round 3 (radius: 5)
[11:22:49 -70182.014901] SLOW spr round 4 (radius: 5)
[11:23:54 -70181.587527] SLOW spr round 5 (radius: 5)
[11:24:59 -70181.587507] SLOW spr round 6 (radius: 10)
[11:26:09 -70181.587476] SLOW spr round 7 (radius: 15)
[11:27:54 -70180.338100] SLOW spr round 8 (radius: 5)
[11:29:20 -70180.338090] SLOW spr round 9 (radius: 10)
[11:30:40 -70178.422194] SLOW spr round 10 (radius: 5)
[11:31:59 -70178.422103] SLOW spr round 11 (radius: 10)
[11:33:16 -70177.102855] SLOW spr round 12 (radius: 5)
[11:34:35 -70177.102772] SLOW spr round 13 (radius: 10)
[11:35:52 -70177.102772] SLOW spr round 14 (radius: 15)
[11:37:32 -70177.102771] SLOW spr round 15 (radius: 20)
[11:39:59 -70175.181615] SLOW spr round 16 (radius: 5)
[11:41:29 -70174.573746] SLOW spr round 17 (radius: 5)
[11:42:46 -70174.573679] SLOW spr round 18 (radius: 10)
[11:44:02 -70174.315579] SLOW spr round 19 (radius: 5)
[11:45:23 -70174.315578] SLOW spr round 20 (radius: 10)
[11:46:38 -70174.315576] SLOW spr round 21 (radius: 15)
[11:48:20 -70174.272166] SLOW spr round 22 (radius: 20)
[11:50:43 -70174.272164] SLOW spr round 23 (radius: 25)
[11:53:41 -70167.912487] SLOW spr round 24 (radius: 5)
[11:55:09 -70167.029383] SLOW spr round 25 (radius: 5)
[11:56:27 -70167.029320] SLOW spr round 26 (radius: 10)
[11:57:41 -70167.029319] SLOW spr round 27 (radius: 15)
[11:59:23 -70166.557812] SLOW spr round 28 (radius: 5)
[12:00:49 -70166.557675] SLOW spr round 29 (radius: 10)
[12:02:09 -70166.557674] SLOW spr round 30 (radius: 15)
[12:03:50 -70166.557674] SLOW spr round 31 (radius: 20)
[12:06:13 -70166.557674] SLOW spr round 32 (radius: 25)
[12:09:10 -70166.557674] Model parameter optimization (eps = 0.100000)

[12:09:17] ML tree search #12, logLikelihood: -70166.348494

[12:09:18 -239133.455894] Initial branch length optimization
[12:09:21 -210641.989714] Model parameter optimization (eps = 10.000000)
[12:09:39 -210444.263738] AUTODETECT spr round 1 (radius: 5)
[12:10:51 -137993.537294] AUTODETECT spr round 2 (radius: 10)
[12:11:59 -106373.237451] AUTODETECT spr round 3 (radius: 15)
[12:13:18 -90541.376898] AUTODETECT spr round 4 (radius: 20)
[12:14:57 -81708.469966] AUTODETECT spr round 5 (radius: 25)
[12:16:34 -80536.022613] SPR radius for FAST iterations: 25 (autodetect)
[12:16:34 -80536.022613] Model parameter optimization (eps = 3.000000)
[12:16:46 -80445.808974] FAST spr round 1 (radius: 25)
[12:18:09 -70962.665240] FAST spr round 2 (radius: 25)
[12:19:19 -70352.888491] FAST spr round 3 (radius: 25)
[12:20:25 -70240.985014] FAST spr round 4 (radius: 25)
[12:21:27 -70225.831322] FAST spr round 5 (radius: 25)
[12:22:25 -70221.968937] FAST spr round 6 (radius: 25)
[12:23:22 -70221.968926] Model parameter optimization (eps = 1.000000)
[12:23:32 -70212.088916] SLOW spr round 1 (radius: 5)
[12:24:40 -70197.840862] SLOW spr round 2 (radius: 5)
[12:25:48 -70187.022953] SLOW spr round 3 (radius: 5)
[12:26:54 -70185.895273] SLOW spr round 4 (radius: 5)
[12:27:59 -70185.894298] SLOW spr round 5 (radius: 10)
[12:29:14 -70176.118235] SLOW spr round 6 (radius: 5)
[12:30:36 -70175.525170] SLOW spr round 7 (radius: 5)
[12:31:48 -70175.524692] SLOW spr round 8 (radius: 10)
[12:33:02 -70175.524525] SLOW spr round 9 (radius: 15)
[12:34:48 -70175.524406] SLOW spr round 10 (radius: 20)
[12:37:16 -70171.497999] SLOW spr round 11 (radius: 5)
[12:38:57 -70171.497601] SLOW spr round 12 (radius: 10)
[12:40:32 -70171.497565] SLOW spr round 13 (radius: 15)
[12:42:25 -70171.497541] SLOW spr round 14 (radius: 20)
[12:44:57 -70171.045214] SLOW spr round 15 (radius: 5)
[12:46:23 -70171.045194] SLOW spr round 16 (radius: 10)
[12:47:45 -70171.045188] SLOW spr round 17 (radius: 15)
[12:49:32 -70169.490534] SLOW spr round 18 (radius: 5)
[12:50:56 -70169.490516] SLOW spr round 19 (radius: 10)
[12:52:15 -70169.490506] SLOW spr round 20 (radius: 15)
[12:53:58 -70169.490504] SLOW spr round 21 (radius: 20)
[12:56:25 -70169.490503] SLOW spr round 22 (radius: 25)
[12:59:30 -70169.490503] Model parameter optimization (eps = 0.100000)

[12:59:36] ML tree search #13, logLikelihood: -70169.243119

[12:59:36 -239237.267599] Initial branch length optimization
[12:59:41 -211500.878075] Model parameter optimization (eps = 10.000000)
[13:00:00 -211268.225833] AUTODETECT spr round 1 (radius: 5)
[13:01:14 -141803.757509] AUTODETECT spr round 2 (radius: 10)
[13:02:29 -109462.846190] AUTODETECT spr round 3 (radius: 15)
[13:03:50 -97436.837077] AUTODETECT spr round 4 (radius: 20)
[13:05:16 -89607.180425] AUTODETECT spr round 5 (radius: 25)
[13:06:57 -84595.293439] SPR radius for FAST iterations: 25 (autodetect)
[13:06:57 -84595.293439] Model parameter optimization (eps = 3.000000)
[13:07:08 -84525.878917] FAST spr round 1 (radius: 25)
[13:08:37 -71127.753949] FAST spr round 2 (radius: 25)
[13:09:51 -70400.698921] FAST spr round 3 (radius: 25)
[13:10:58 -70307.299139] FAST spr round 4 (radius: 25)
[13:12:03 -70248.438730] FAST spr round 5 (radius: 25)
[13:13:01 -70248.097244] FAST spr round 6 (radius: 25)
[13:13:57 -70248.097178] Model parameter optimization (eps = 1.000000)
[13:14:09 -70225.258022] SLOW spr round 1 (radius: 5)
[13:15:17 -70208.444289] SLOW spr round 2 (radius: 5)
[13:16:25 -70207.913275] SLOW spr round 3 (radius: 5)
[13:17:35 -70207.912883] SLOW spr round 4 (radius: 10)
[13:18:49 -70207.513274] SLOW spr round 5 (radius: 5)
[13:20:10 -70207.513128] SLOW spr round 6 (radius: 10)
[13:21:25 -70207.513085] SLOW spr round 7 (radius: 15)
[13:23:09 -70206.210010] SLOW spr round 8 (radius: 5)
[13:24:33 -70205.882266] SLOW spr round 9 (radius: 5)
[13:25:48 -70205.017705] SLOW spr round 10 (radius: 5)
[13:26:57 -70205.017478] SLOW spr round 11 (radius: 10)
[13:28:09 -70205.017473] SLOW spr round 12 (radius: 15)
[13:29:48 -70205.017469] SLOW spr round 13 (radius: 20)
[13:31:46 -70199.828774] SLOW spr round 14 (radius: 5)
[13:33:12 -70199.828764] SLOW spr round 15 (radius: 10)
[13:34:33 -70199.828763] SLOW spr round 16 (radius: 15)
[13:36:16 -70199.828762] SLOW spr round 17 (radius: 20)
[13:38:19 -70199.828762] SLOW spr round 18 (radius: 25)
[13:40:32 -70188.998200] SLOW spr round 19 (radius: 5)
[13:42:02 -70187.708081] SLOW spr round 20 (radius: 5)
[13:43:19 -70187.708045] SLOW spr round 21 (radius: 10)
[13:44:33 -70187.708035] SLOW spr round 22 (radius: 15)
[13:46:15 -70184.884142] SLOW spr round 23 (radius: 5)
[13:47:42 -70184.884141] SLOW spr round 24 (radius: 10)
[13:49:03 -70184.884140] SLOW spr round 25 (radius: 15)
[13:50:38 -70184.884139] SLOW spr round 26 (radius: 20)
[13:52:33 -70184.884139] SLOW spr round 27 (radius: 25)
[13:54:41 -70184.884139] Model parameter optimization (eps = 0.100000)

[13:54:45] ML tree search #14, logLikelihood: -70184.851655

[13:54:45 -238138.195866] Initial branch length optimization
[13:54:48 -210474.000088] Model parameter optimization (eps = 10.000000)
[13:55:02 -210355.037965] AUTODETECT spr round 1 (radius: 5)
[13:56:16 -136948.303965] AUTODETECT spr round 2 (radius: 10)
[13:57:27 -104981.235743] AUTODETECT spr round 3 (radius: 15)
[13:58:40 -90915.852492] AUTODETECT spr round 4 (radius: 20)
[14:00:18 -81882.436829] AUTODETECT spr round 5 (radius: 25)
[14:02:19 -81137.873057] SPR radius for FAST iterations: 25 (autodetect)
[14:02:19 -81137.873057] Model parameter optimization (eps = 3.000000)
[14:02:33 -80977.062086] FAST spr round 1 (radius: 25)
[14:03:55 -70797.595278] FAST spr round 2 (radius: 25)
[14:05:07 -70300.515990] FAST spr round 3 (radius: 25)
[14:06:14 -70253.652972] FAST spr round 4 (radius: 25)
[14:07:15 -70242.627755] FAST spr round 5 (radius: 25)
[14:08:12 -70242.627580] Model parameter optimization (eps = 1.000000)
[14:08:21 -70234.100890] SLOW spr round 1 (radius: 5)
[14:09:29 -70201.419243] SLOW spr round 2 (radius: 5)
[14:10:37 -70193.184205] SLOW spr round 3 (radius: 5)
[14:11:43 -70187.808061] SLOW spr round 4 (radius: 5)
[14:12:50 -70186.507723] SLOW spr round 5 (radius: 5)
[14:13:54 -70186.507700] SLOW spr round 6 (radius: 10)
[14:15:07 -70180.026444] SLOW spr round 7 (radius: 5)
[14:16:28 -70179.181714] SLOW spr round 8 (radius: 5)
[14:17:42 -70175.231342] SLOW spr round 9 (radius: 5)
[14:18:50 -70175.231295] SLOW spr round 10 (radius: 10)
[14:20:05 -70175.231265] SLOW spr round 11 (radius: 15)
[14:21:48 -70175.059880] SLOW spr round 12 (radius: 5)
[14:23:18 -70175.059834] SLOW spr round 13 (radius: 10)
[14:24:44 -70175.059831] SLOW spr round 14 (radius: 15)
[14:26:29 -70175.059830] SLOW spr round 15 (radius: 20)
[14:28:39 -70172.716838] SLOW spr round 16 (radius: 5)
[14:30:05 -70172.249156] SLOW spr round 17 (radius: 5)
[14:31:22 -70172.249152] SLOW spr round 18 (radius: 10)
[14:32:42 -70172.249151] SLOW spr round 19 (radius: 15)
[14:34:27 -70172.249150] SLOW spr round 20 (radius: 20)
[14:36:39 -70172.249149] SLOW spr round 21 (radius: 25)
[14:39:12 -70172.249148] Model parameter optimization (eps = 0.100000)

[14:39:17] ML tree search #15, logLikelihood: -70172.096094

[14:39:17 -237268.464065] Initial branch length optimization
[14:39:21 -210321.112500] Model parameter optimization (eps = 10.000000)
[14:39:40 -210201.163225] AUTODETECT spr round 1 (radius: 5)
[14:40:54 -137486.133855] AUTODETECT spr round 2 (radius: 10)
[14:42:04 -104728.476563] AUTODETECT spr round 3 (radius: 15)
[14:43:20 -92352.643442] AUTODETECT spr round 4 (radius: 20)
[14:44:51 -84942.752583] AUTODETECT spr round 5 (radius: 25)
[14:46:21 -82884.660756] SPR radius for FAST iterations: 25 (autodetect)
[14:46:21 -82884.660756] Model parameter optimization (eps = 3.000000)
[14:46:34 -82765.781922] FAST spr round 1 (radius: 25)
[14:48:06 -70853.710918] FAST spr round 2 (radius: 25)
[14:49:18 -70268.222473] FAST spr round 3 (radius: 25)
[14:50:24 -70185.533425] FAST spr round 4 (radius: 25)
[14:51:24 -70177.569545] FAST spr round 5 (radius: 25)
[14:52:21 -70177.569453] Model parameter optimization (eps = 1.000000)
[14:52:30 -70164.832841] SLOW spr round 1 (radius: 5)
[14:53:42 -70149.079647] SLOW spr round 2 (radius: 5)
[14:54:49 -70142.758474] SLOW spr round 3 (radius: 5)
[14:55:54 -70141.807680] SLOW spr round 4 (radius: 5)
[14:56:58 -70140.664956] SLOW spr round 5 (radius: 5)
[14:58:02 -70140.664955] SLOW spr round 6 (radius: 10)
[14:59:11 -70140.629039] SLOW spr round 7 (radius: 15)
[15:00:51 -70139.374708] SLOW spr round 8 (radius: 5)
[15:02:16 -70136.065895] SLOW spr round 9 (radius: 5)
[15:03:31 -70136.065871] SLOW spr round 10 (radius: 10)
[15:04:44 -70136.065871] SLOW spr round 11 (radius: 15)
[15:06:23 -70135.550955] SLOW spr round 12 (radius: 5)
[15:07:47 -70135.550907] SLOW spr round 13 (radius: 10)
[15:09:05 -70135.550906] SLOW spr round 14 (radius: 15)
[15:10:43 -70135.550906] SLOW spr round 15 (radius: 20)
[15:12:54 -70135.550906] SLOW spr round 16 (radius: 25)
[15:15:38 -70134.408791] SLOW spr round 17 (radius: 5)
[15:17:05 -70134.408790] SLOW spr round 18 (radius: 10)
[15:18:25 -70134.408789] SLOW spr round 19 (radius: 15)
[15:20:03 -70134.408789] SLOW spr round 20 (radius: 20)
[15:22:14 -70134.408789] SLOW spr round 21 (radius: 25)
[15:24:57 -70134.408789] Model parameter optimization (eps = 0.100000)

[15:25:02] ML tree search #16, logLikelihood: -70134.333246

[15:25:02 -237560.036177] Initial branch length optimization
[15:25:05 -210423.155356] Model parameter optimization (eps = 10.000000)
[15:25:35 -210147.018069] AUTODETECT spr round 1 (radius: 5)
[15:26:45 -139314.609276] AUTODETECT spr round 2 (radius: 10)
[15:27:54 -107164.799993] AUTODETECT spr round 3 (radius: 15)
[15:29:14 -91816.272513] AUTODETECT spr round 4 (radius: 20)
[15:30:46 -86972.482885] AUTODETECT spr round 5 (radius: 25)
[15:32:17 -82600.327328] SPR radius for FAST iterations: 25 (autodetect)
[15:32:17 -82600.327328] Model parameter optimization (eps = 3.000000)
[15:32:28 -82522.846138] FAST spr round 1 (radius: 25)
[15:33:58 -70944.670928] FAST spr round 2 (radius: 25)
[15:35:11 -70319.150773] FAST spr round 3 (radius: 25)
[15:36:19 -70263.494067] FAST spr round 4 (radius: 25)
[15:37:19 -70255.580828] FAST spr round 5 (radius: 25)
[15:38:16 -70255.580632] Model parameter optimization (eps = 1.000000)
[15:38:26 -70243.139550] SLOW spr round 1 (radius: 5)
[15:39:36 -70215.279692] SLOW spr round 2 (radius: 5)
[15:40:43 -70215.131444] SLOW spr round 3 (radius: 5)
[15:41:48 -70213.885491] SLOW spr round 4 (radius: 5)
[15:42:52 -70213.885428] SLOW spr round 5 (radius: 10)
[15:44:04 -70204.647008] SLOW spr round 6 (radius: 5)
[15:45:25 -70202.251070] SLOW spr round 7 (radius: 5)
[15:46:38 -70200.587926] SLOW spr round 8 (radius: 5)
[15:47:47 -70197.115113] SLOW spr round 9 (radius: 5)
[15:48:55 -70196.302169] SLOW spr round 10 (radius: 5)
[15:50:00 -70196.302045] SLOW spr round 11 (radius: 10)
[15:51:10 -70196.301666] SLOW spr round 12 (radius: 15)
[15:52:56 -70191.849778] SLOW spr round 13 (radius: 5)
[15:54:22 -70190.648844] SLOW spr round 14 (radius: 5)
[15:55:37 -70190.648840] SLOW spr round 15 (radius: 10)
[15:56:51 -70184.201218] SLOW spr round 16 (radius: 5)
[15:58:09 -70184.201170] SLOW spr round 17 (radius: 10)
[15:59:25 -70179.648294] SLOW spr round 18 (radius: 5)
[16:00:43 -70179.648214] SLOW spr round 19 (radius: 10)
[16:01:59 -70179.648205] SLOW spr round 20 (radius: 15)
[16:03:47 -70172.837311] SLOW spr round 21 (radius: 5)
[16:05:11 -70172.837311] SLOW spr round 22 (radius: 10)
[16:06:31 -70172.777263] SLOW spr round 23 (radius: 15)
[16:08:16 -70170.587613] SLOW spr round 24 (radius: 5)
[16:09:40 -70170.587547] SLOW spr round 25 (radius: 10)
[16:11:00 -70170.587547] SLOW spr round 26 (radius: 15)
[16:12:43 -70170.587547] SLOW spr round 27 (radius: 20)
[16:15:07 -70159.805332] SLOW spr round 28 (radius: 5)
[16:16:33 -70159.804604] SLOW spr round 29 (radius: 10)
[16:17:56 -70159.804603] SLOW spr round 30 (radius: 15)
[16:19:36 -70159.804601] SLOW spr round 31 (radius: 20)
[16:21:59 -70159.804599] SLOW spr round 32 (radius: 25)
[16:24:57 -70159.804599] Model parameter optimization (eps = 0.100000)

[16:25:04] ML tree search #17, logLikelihood: -70158.525241

[16:25:04 -237563.027618] Initial branch length optimization
[16:25:06 -210394.580228] Model parameter optimization (eps = 10.000000)
[16:25:27 -210122.347129] AUTODETECT spr round 1 (radius: 5)
[16:26:39 -136655.719526] AUTODETECT spr round 2 (radius: 10)
[16:27:49 -106751.146278] AUTODETECT spr round 3 (radius: 15)
[16:29:12 -93841.095522] AUTODETECT spr round 4 (radius: 20)
[16:30:44 -87951.016227] AUTODETECT spr round 5 (radius: 25)
[16:32:25 -81402.682545] SPR radius for FAST iterations: 25 (autodetect)
[16:32:25 -81402.682545] Model parameter optimization (eps = 3.000000)
[16:32:41 -81317.266960] FAST spr round 1 (radius: 25)
[16:34:09 -70900.152841] FAST spr round 2 (radius: 25)
[16:35:24 -70327.902842] FAST spr round 3 (radius: 25)
[16:36:32 -70253.071050] FAST spr round 4 (radius: 25)
[16:37:35 -70238.991734] FAST spr round 5 (radius: 25)
[16:38:33 -70238.991471] Model parameter optimization (eps = 1.000000)
[16:38:41 -70235.700447] SLOW spr round 1 (radius: 5)
[16:39:51 -70213.342519] SLOW spr round 2 (radius: 5)
[16:40:59 -70204.286581] SLOW spr round 3 (radius: 5)
[16:42:05 -70201.504158] SLOW spr round 4 (radius: 5)
[16:43:11 -70198.931971] SLOW spr round 5 (radius: 5)
[16:44:17 -70187.179163] SLOW spr round 6 (radius: 5)
[16:45:21 -70187.179153] SLOW spr round 7 (radius: 10)
[16:46:33 -70179.811721] SLOW spr round 8 (radius: 5)
[16:47:52 -70179.492047] SLOW spr round 9 (radius: 5)
[16:49:04 -70179.491710] SLOW spr round 10 (radius: 10)
[16:50:17 -70179.491709] SLOW spr round 11 (radius: 15)
[16:52:00 -70171.437390] SLOW spr round 12 (radius: 5)
[16:53:26 -70163.136525] SLOW spr round 13 (radius: 5)
[16:54:41 -70163.136523] SLOW spr round 14 (radius: 10)
[16:55:56 -70163.136520] SLOW spr round 15 (radius: 15)
[16:57:38 -70163.136520] SLOW spr round 16 (radius: 20)
[16:59:54 -70160.660826] SLOW spr round 17 (radius: 5)
[17:01:20 -70160.660767] SLOW spr round 18 (radius: 10)
[17:02:42 -70160.660767] SLOW spr round 19 (radius: 15)
[17:04:23 -70160.660767] SLOW spr round 20 (radius: 20)
[17:06:38 -70160.660767] SLOW spr round 21 (radius: 25)
[17:09:30 -70159.010258] SLOW spr round 22 (radius: 5)
[17:10:57 -70159.010229] SLOW spr round 23 (radius: 10)
[17:12:20 -70159.009971] SLOW spr round 24 (radius: 15)
[17:14:00 -70159.009932] SLOW spr round 25 (radius: 20)
[17:16:17 -70156.384652] SLOW spr round 26 (radius: 5)
[17:17:43 -70156.384539] SLOW spr round 27 (radius: 10)
[17:19:05 -70155.836613] SLOW spr round 28 (radius: 5)
[17:20:23 -70155.836612] SLOW spr round 29 (radius: 10)
[17:21:38 -70155.836612] SLOW spr round 30 (radius: 15)
[17:23:19 -70155.836612] SLOW spr round 31 (radius: 20)
[17:25:35 -70155.836612] SLOW spr round 32 (radius: 25)
[17:28:27 -70150.613420] SLOW spr round 33 (radius: 5)
[17:29:54 -70149.528835] SLOW spr round 34 (radius: 5)
[17:31:11 -70149.528834] SLOW spr round 35 (radius: 10)
[17:32:26 -70149.528834] SLOW spr round 36 (radius: 15)
[17:34:07 -70149.528834] SLOW spr round 37 (radius: 20)
[17:36:23 -70149.528833] SLOW spr round 38 (radius: 25)
[17:39:14 -70149.528833] Model parameter optimization (eps = 0.100000)

[17:39:20] ML tree search #18, logLikelihood: -70149.428453

[17:39:20 -237576.317070] Initial branch length optimization
[17:39:23 -210008.965268] Model parameter optimization (eps = 10.000000)
[17:39:34 -209892.827504] AUTODETECT spr round 1 (radius: 5)
[17:40:49 -139544.225765] AUTODETECT spr round 2 (radius: 10)
[17:41:58 -109801.356222] AUTODETECT spr round 3 (radius: 15)
[17:43:31 -96183.091973] AUTODETECT spr round 4 (radius: 20)
[17:45:17 -88766.244261] AUTODETECT spr round 5 (radius: 25)
[17:47:16 -85261.260626] SPR radius for FAST iterations: 25 (autodetect)
[17:47:16 -85261.260626] Model parameter optimization (eps = 3.000000)
[17:47:22 -85255.846093] FAST spr round 1 (radius: 25)
[17:49:17 -71484.000469] FAST spr round 2 (radius: 25)
[17:50:55 -70567.693815] FAST spr round 3 (radius: 25)
[17:52:22 -70435.436695] FAST spr round 4 (radius: 25)
[17:53:40 -70402.515564] FAST spr round 5 (radius: 25)
[17:54:52 -70400.306344] FAST spr round 6 (radius: 25)
[17:56:01 -70400.306274] Model parameter optimization (eps = 1.000000)
[17:56:06 -70400.185825] SLOW spr round 1 (radius: 5)
[17:57:30 -70390.898655] SLOW spr round 2 (radius: 5)
[17:58:52 -70389.686469] SLOW spr round 3 (radius: 5)
[18:00:12 -70389.686458] SLOW spr round 4 (radius: 10)
[18:01:39 -70382.848662] SLOW spr round 5 (radius: 5)
[18:03:16 -70382.848444] SLOW spr round 6 (radius: 10)
[18:04:50 -70382.848430] SLOW spr round 7 (radius: 15)
[18:06:52 -70382.078422] SLOW spr round 8 (radius: 5)
[18:08:36 -70381.305481] SLOW spr round 9 (radius: 5)
[18:10:09 -70381.305476] SLOW spr round 10 (radius: 10)
[18:11:40 -70381.305471] SLOW spr round 11 (radius: 15)
[18:13:41 -70381.305466] SLOW spr round 12 (radius: 20)
[18:16:17 -70375.674056] SLOW spr round 13 (radius: 5)
[18:18:04 -70372.426889] SLOW spr round 14 (radius: 5)
[18:19:38 -70372.426846] SLOW spr round 15 (radius: 10)
[18:21:11 -70372.426841] SLOW spr round 16 (radius: 15)
[18:23:12 -70372.426836] SLOW spr round 17 (radius: 20)
[18:25:48 -70368.320427] SLOW spr round 18 (radius: 5)
[18:27:34 -70368.320413] SLOW spr round 19 (radius: 10)
[18:29:15 -70368.320408] SLOW spr round 20 (radius: 15)
[18:31:16 -70368.320403] SLOW spr round 21 (radius: 20)
[18:33:52 -70368.320398] SLOW spr round 22 (radius: 25)
[18:36:59 -70368.320392] Model parameter optimization (eps = 0.100000)

[18:37:00] ML tree search #19, logLikelihood: -70368.320360

[18:37:01 -237022.283897] Initial branch length optimization
[18:37:04 -209370.350604] Model parameter optimization (eps = 10.000000)
[18:37:21 -209235.158535] AUTODETECT spr round 1 (radius: 5)
[18:38:48 -137293.306450] AUTODETECT spr round 2 (radius: 10)
[18:40:15 -109337.769606] AUTODETECT spr round 3 (radius: 15)
[18:41:53 -98392.527403] AUTODETECT spr round 4 (radius: 20)
[18:43:48 -88048.315906] AUTODETECT spr round 5 (radius: 25)
[18:45:56 -82332.532462] SPR radius for FAST iterations: 25 (autodetect)
[18:45:56 -82332.532462] Model parameter optimization (eps = 3.000000)
[18:46:10 -82216.969905] FAST spr round 1 (radius: 25)
[18:48:02 -70842.668195] FAST spr round 2 (radius: 25)
[18:49:34 -70261.509891] FAST spr round 3 (radius: 25)
[18:50:56 -70187.953295] FAST spr round 4 (radius: 25)
[18:52:12 -70172.871763] FAST spr round 5 (radius: 25)
[18:53:24 -70159.121160] FAST spr round 6 (radius: 25)
[18:54:33 -70153.774654] FAST spr round 7 (radius: 25)
[18:55:40 -70153.774550] Model parameter optimization (eps = 1.000000)
[18:55:52 -70135.950612] SLOW spr round 1 (radius: 5)
[18:57:14 -70116.184821] SLOW spr round 2 (radius: 5)
[18:58:36 -70116.145490] SLOW spr round 3 (radius: 10)
[19:00:04 -70112.526850] SLOW spr round 4 (radius: 5)
[19:01:44 -70112.523020] SLOW spr round 5 (radius: 10)
[19:03:18 -70112.516153] SLOW spr round 6 (radius: 15)
[19:05:18 -70112.151748] SLOW spr round 7 (radius: 5)
[19:07:03 -70112.151382] SLOW spr round 8 (radius: 10)
[19:08:40 -70112.151136] SLOW spr round 9 (radius: 15)
[19:10:40 -70112.150964] SLOW spr round 10 (radius: 20)
[19:13:14 -70109.711393] SLOW spr round 11 (radius: 5)
[19:15:00 -70109.020376] SLOW spr round 12 (radius: 5)
[19:16:34 -70109.020369] SLOW spr round 13 (radius: 10)
[19:18:06 -70109.020367] SLOW spr round 14 (radius: 15)
[19:20:06 -70109.020365] SLOW spr round 15 (radius: 20)
[19:22:38 -70109.020364] SLOW spr round 16 (radius: 25)
[19:25:46 -70105.431425] SLOW spr round 17 (radius: 5)
[19:27:33 -70102.031229] SLOW spr round 18 (radius: 5)
[19:29:07 -70102.031228] SLOW spr round 19 (radius: 10)
[19:30:38 -70102.031228] SLOW spr round 20 (radius: 15)
[19:32:40 -70102.031228] SLOW spr round 21 (radius: 20)
[19:35:12 -70102.031228] SLOW spr round 22 (radius: 25)
[19:38:19 -70102.031228] Model parameter optimization (eps = 0.100000)

[19:38:26] ML tree search #20, logLikelihood: -70101.850682


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.391621,0.403726) (0.365754,0.867072) (0.177081,1.341029) (0.065544,4.383090) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -70101.850682

AIC score: 144213.701364 / AICc score: 8188273.701364 / BIC score: 152488.074078
Free parameters (model + branch lengths): 2005

WARNING: Number of free parameters (K=2005) is larger than alignment size (n=458).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05639/3_mltree/Q05639.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05639/3_mltree/Q05639.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05639/3_mltree/Q05639.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05639/3_mltree/Q05639.raxml.log

Analysis started: 04-Jul-2021 04:38:10 / finished: 05-Jul-2021 00:16:36

Elapsed time: 70706.521 seconds

Consumed energy: 5191.713 Wh (= 26 km in an electric car, or 130 km with an e-scooter!)