RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 04-Jul-2021 08:46:12 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05193/2_msa/Q05193_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05193/3_mltree/Q05193 --seed 2 --threads 6 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (6 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05193/2_msa/Q05193_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 405 sites WARNING: Sequences tr_B4R5J2_B4R5J2_DROSI_7240 and sp_P27619_DYN_DROME_7227 are exactly identical! WARNING: Sequences tr_E1BXY4_E1BXY4_CHICK_9031 and tr_G1MY24_G1MY24_MELGA_9103 are exactly identical! WARNING: Sequences tr_E1BXY4_E1BXY4_CHICK_9031 and tr_A0A226NNZ0_A0A226NNZ0_CALSU_9009 are exactly identical! WARNING: Sequences tr_E1BXY4_E1BXY4_CHICK_9031 and tr_A0A226NWL6_A0A226NWL6_COLVI_9014 are exactly identical! WARNING: Sequences sp_P39054_DYN2_MOUSE_10090 and tr_A0A3Q0D5C2_A0A3Q0D5C2_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YP69_M3YP69_MUSPF_9669 and tr_A0A2I3T4Y7_A0A2I3T4Y7_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3YP69_M3YP69_MUSPF_9669 and tr_A0A286XEM5_A0A286XEM5_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3YP69_M3YP69_MUSPF_9669 and sp_Q05193_DYN1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3YP69_M3YP69_MUSPF_9669 and tr_F1RRW8_F1RRW8_PIG_9823 are exactly identical! WARNING: Sequences tr_M3YP69_M3YP69_MUSPF_9669 and tr_G7PRF8_G7PRF8_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3YP69_M3YP69_MUSPF_9669 and tr_L5K8Z3_L5K8Z3_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YP69_M3YP69_MUSPF_9669 and tr_M3W4S7_M3W4S7_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YP69_M3YP69_MUSPF_9669 and tr_A0A091DN37_A0A091DN37_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3YP69_M3YP69_MUSPF_9669 and tr_A0A2R9AX22_A0A2R9AX22_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3YP69_M3YP69_MUSPF_9669 and tr_A0A2U3VDA2_A0A2U3VDA2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YP69_M3YP69_MUSPF_9669 and tr_A0A2Y9J6B9_A0A2Y9J6B9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YP69_M3YP69_MUSPF_9669 and tr_A0A2Y9NN86_A0A2Y9NN86_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3YP69_M3YP69_MUSPF_9669 and tr_A0A2Y9SUZ8_A0A2Y9SUZ8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_B6H720_B6H720_PENRW_500485 and tr_A0A1V6YA38_A0A1V6YA38_PENNA_60175 are exactly identical! WARNING: Sequences tr_E3RJE7_E3RJE7_PYRTT_861557 and tr_B2WDN8_B2WDN8_PYRTR_426418 are exactly identical! WARNING: Sequences tr_E3RJE7_E3RJE7_PYRTT_861557 and tr_A0A177D6N0_A0A177D6N0_ALTAL_5599 are exactly identical! WARNING: Sequences tr_G1RZ14_G1RZ14_NOMLE_61853 and tr_F6PLW0_F6PLW0_HORSE_9796 are exactly identical! WARNING: Sequences tr_G1RZ14_G1RZ14_NOMLE_61853 and tr_F7FCH0_F7FCH0_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RZ14_G1RZ14_NOMLE_61853 and tr_G7NVH2_G7NVH2_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1RZ14_G1RZ14_NOMLE_61853 and tr_E1BA62_E1BA62_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G1RZ14_G1RZ14_NOMLE_61853 and tr_A0A2I3NEL4_A0A2I3NEL4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RZ14_G1RZ14_NOMLE_61853 and tr_A0A0D9RGW8_A0A0D9RGW8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RZ14_G1RZ14_NOMLE_61853 and tr_A0A2K5N1J4_A0A2K5N1J4_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RZ14_G1RZ14_NOMLE_61853 and tr_A0A2K6E0W7_A0A2K6E0W7_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RZ14_G1RZ14_NOMLE_61853 and tr_A0A2K5XGY5_A0A2K5XGY5_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RZ14_G1RZ14_NOMLE_61853 and tr_A0A384CLR8_A0A384CLR8_URSMA_29073 are exactly identical! WARNING: Sequences tr_J3KL22_J3KL22_COCIM_246410 and tr_E9CU59_E9CU59_COCPS_443226 are exactly identical! WARNING: Sequences tr_J3KL22_J3KL22_COCIM_246410 and tr_A0A0J7BHQ3_A0A0J7BHQ3_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6QMJ5_B6QMJ5_TALMQ_441960 and tr_A0A093UYG3_A0A093UYG3_TALMA_1077442 are exactly identical! WARNING: Sequences tr_A0A2I2Y8E6_A0A2I2Y8E6_GORGO_9595 and tr_H2NXK4_H2NXK4_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2Y8E6_A0A2I2Y8E6_GORGO_9595 and sp_P50570_DYN2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3R025_G3R025_GORGO_9595 and sp_Q9UQ16_DYN3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_C0NKN2_C0NKN2_AJECG_447093 and tr_C6HAX1_C6HAX1_AJECH_544712 are exactly identical! WARNING: Sequences tr_C0NKN2_C0NKN2_AJECG_447093 and tr_F0UD31_F0UD31_AJEC8_544711 are exactly identical! WARNING: Sequences tr_Q7SDJ3_Q7SDJ3_NEUCR_367110 and tr_G4U8X4_G4U8X4_NEUT9_510952 are exactly identical! WARNING: Sequences tr_G1U9C1_G1U9C1_RABIT_9986 and tr_F7GM55_F7GM55_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1U9C1_G1U9C1_RABIT_9986 and tr_A0A0D9R3Q2_A0A0D9R3Q2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_B8NX83_B8NX83_ASPFN_332952 and tr_Q2TVY0_Q2TVY0_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8NX83_B8NX83_ASPFN_332952 and tr_A0A0F0IIW7_A0A0F0IIW7_ASPPU_1403190 are exactly identical! WARNING: Sequences tr_B8NX83_B8NX83_ASPFN_332952 and tr_A0A1S9DFU0_A0A1S9DFU0_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A2I3RXA8_A0A2I3RXA8_PANTR_9598 and tr_A0A2R8Z8E5_A0A2R8Z8E5_PANPA_9597 are exactly identical! WARNING: Sequences tr_F9F1G4_F9F1G4_FUSOF_660025 and tr_W7LRJ8_W7LRJ8_GIBM7_334819 are exactly identical! WARNING: Sequences tr_F9F1G4_F9F1G4_FUSOF_660025 and tr_A0A0D2X858_A0A0D2X858_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9F1G4_F9F1G4_FUSOF_660025 and tr_N4U7Q5_N4U7Q5_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9F1G4_F9F1G4_FUSOF_660025 and tr_A0A2H3SV71_A0A2H3SV71_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9F1G4_F9F1G4_FUSOF_660025 and tr_A0A2H3HSI1_A0A2H3HSI1_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F9F1G4_F9F1G4_FUSOF_660025 and tr_A0A2K0WDB2_A0A2K0WDB2_GIBNY_42673 are exactly identical! WARNING: Sequences tr_J4UJE8_J4UJE8_BEAB2_655819 and tr_A0A2N6NGU0_A0A2N6NGU0_BEABA_176275 are exactly identical! WARNING: Sequences tr_A0A158P3J0_A0A158P3J0_ATTCE_12957 and tr_A0A195BYX1_A0A195BYX1_9HYME_520822 are exactly identical! WARNING: Sequences tr_I3MZB5_I3MZB5_ICTTR_43179 and tr_A0A2I3LFI4_A0A2I3LFI4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_I3MZB5_I3MZB5_ICTTR_43179 and tr_A0A2K5N2A2_A0A2K5N2A2_CERAT_9531 are exactly identical! WARNING: Sequences tr_I3MZB5_I3MZB5_ICTTR_43179 and tr_A0A2K6BD87_A0A2K6BD87_MACNE_9545 are exactly identical! WARNING: Sequences tr_I3MZB5_I3MZB5_ICTTR_43179 and tr_A0A2K5YIL0_A0A2K5YIL0_MANLE_9568 are exactly identical! WARNING: Sequences tr_I3MZB5_I3MZB5_ICTTR_43179 and tr_A0A2Y9L8R1_A0A2Y9L8R1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A1DAZ1_A1DAZ1_NEOFI_331117 and tr_A0A0S7E4Q7_A0A0S7E4Q7_9EURO_293939 are exactly identical! WARNING: Sequences tr_A1DAZ1_A1DAZ1_NEOFI_331117 and tr_A0A2I1BY04_A0A2I1BY04_9EURO_1392255 are exactly identical! WARNING: Sequences tr_A2QHI2_A2QHI2_ASPNC_425011 and tr_G7XV65_G7XV65_ASPKW_1033177 are exactly identical! WARNING: Sequences tr_A2QHI2_A2QHI2_ASPNC_425011 and tr_G3Y7Y3_G3Y7Y3_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2QHI2_A2QHI2_ASPNC_425011 and tr_A0A146FYX7_A0A146FYX7_9EURO_1069201 are exactly identical! WARNING: Sequences tr_A2QHI2_A2QHI2_ASPNC_425011 and tr_A0A1L9NIX0_A0A1L9NIX0_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A2QHI2_A2QHI2_ASPNC_425011 and tr_A0A1L9U2M6_A0A1L9U2M6_9EURO_767769 are exactly identical! WARNING: Sequences tr_A2QHI2_A2QHI2_ASPNC_425011 and tr_A0A317V7Y1_A0A317V7Y1_9EURO_1448314 are exactly identical! WARNING: Sequences tr_A2QHI2_A2QHI2_ASPNC_425011 and tr_A0A318ZVQ4_A0A318ZVQ4_9EURO_1450533 are exactly identical! WARNING: Sequences tr_A0A1D5R070_A0A1D5R070_MACMU_9544 and sp_Q08DF4_DYN1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A1D5R070_A0A1D5R070_MACMU_9544 and tr_A0A096P0L7_A0A096P0L7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A1D5R070_A0A1D5R070_MACMU_9544 and tr_A0A0D9RNL6_A0A0D9RNL6_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G5C7M9_G5C7M9_HETGA_10181 and tr_A0A091E087_A0A091E087_FUKDA_885580 are exactly identical! WARNING: Sequences tr_E6R318_E6R318_CRYGW_367775 and tr_A0A095EM94_A0A095EM94_CRYGR_294750 are exactly identical! WARNING: Sequences tr_A0A0E0CCA3_A0A0E0CCA3_9ORYZ_40149 and tr_Q5JJJ5_Q5JJJ5_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_F9X1G0_F9X1G0_ZYMTI_336722 and tr_A0A0F4GRJ0_A0A0F4GRJ0_9PEZI_1047168 are exactly identical! WARNING: Sequences tr_F9X1G0_F9X1G0_ZYMTI_336722 and tr_A0A1X7RI49_A0A1X7RI49_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_E3MCH2_E3MCH2_CAERE_31234 and tr_A0A261CPD2_A0A261CPD2_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A8X478_A8X478_CAEBR_6238 and tr_A0A2G5T0D0_A0A2G5T0D0_9PELO_1611254 are exactly identical! WARNING: Sequences tr_C9SLR7_C9SLR7_VERA1_526221 and tr_A0A0G4N3F7_A0A0G4N3F7_9PEZI_100787 are exactly identical! WARNING: Sequences tr_B3RPC4_B3RPC4_TRIAD_10228 and tr_A0A369SF21_A0A369SF21_9METZ_287889 are exactly identical! WARNING: Sequences sp_A6H7I5_DYN2_BOVIN_9913 and tr_F1MW91_F1MW91_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F2PGK6_F2PGK6_TRIEC_559882 and tr_A0A059J694_A0A059J694_9EURO_1215338 are exactly identical! WARNING: Sequences tr_L2G810_L2G810_COLFN_1213859 and tr_T0L2Q9_T0L2Q9_COLGC_1237896 are exactly identical! WARNING: Sequences tr_U3I0W3_U3I0W3_ANAPL_8839 and tr_A0A087RGU8_A0A087RGU8_APTFO_9233 are exactly identical! WARNING: Sequences tr_U3I0W3_U3I0W3_ANAPL_8839 and tr_A0A093HXU2_A0A093HXU2_STRCA_441894 are exactly identical! WARNING: Sequences tr_M2T0X8_M2T0X8_COCSN_665912 and tr_M2TF69_M2TF69_COCH5_701091 are exactly identical! WARNING: Sequences tr_M2T0X8_M2T0X8_COCSN_665912 and tr_W6ZKX6_W6ZKX6_COCMI_930090 are exactly identical! WARNING: Sequences tr_U5H5W1_U5H5W1_USTV1_683840 and tr_A0A2X0MRI4_A0A2X0MRI4_9BASI_796604 are exactly identical! WARNING: Sequences tr_V2WXT5_V2WXT5_MONRO_1381753 and tr_A0A0W0G2V7_A0A0W0G2V7_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W2PU56_W2PU56_PHYPN_761204 and tr_A0A0W8DGL2_A0A0W8DGL2_PHYNI_4790 are exactly identical! WARNING: Sequences tr_W2PU56_W2PU56_PHYPN_761204 and tr_W2KMW5_W2KMW5_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A3B6EPR7_A0A3B6EPR7_WHEAT_4565 and tr_A0A3B6FZ26_A0A3B6FZ26_WHEAT_4565 are exactly identical! WARNING: Sequences tr_W9VGU7_W9VGU7_9EURO_1182544 and tr_A0A0D2FQ89_A0A0D2FQ89_9EURO_5601 are exactly identical! WARNING: Sequences tr_A0A010QSS4_A0A010QSS4_9PEZI_1445577 and tr_A0A135U7X9_A0A135U7X9_9PEZI_1209931 are exactly identical! WARNING: Sequences tr_A0A015KE57_A0A015KE57_9GLOM_1432141 and tr_A0A2H5S4J4_A0A2H5S4J4_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A074WT47_A0A074WT47_9PEZI_1043004 and tr_A0A074Z787_A0A074Z787_9PEZI_1043005 are exactly identical! WARNING: Sequences tr_A0A084QL21_A0A084QL21_STAC4_1283841 and tr_A0A084RTX0_A0A084RTX0_STACH_1283842 are exactly identical! WARNING: Sequences tr_A0A094DHN5_A0A094DHN5_9PEZI_1420910 and tr_A0A1B8DQW8_A0A1B8DQW8_9PEZI_1524831 are exactly identical! WARNING: Sequences tr_A0A094E6M2_A0A094E6M2_9PEZI_1420912 and tr_A0A1B8G8K7_A0A1B8G8K7_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A0A0K464_A0A0A0K464_CUCSA_3659 and tr_A0A1S3C067_A0A1S3C067_CUCME_3656 are exactly identical! WARNING: Sequences tr_A0A0A2L729_A0A0A2L729_PENEN_27334 and tr_A0A0G4P0X8_A0A0G4P0X8_PENCA_1429867 are exactly identical! WARNING: Sequences tr_A0A0A2L729_A0A0A2L729_PENEN_27334 and tr_A0A101MIE0_A0A101MIE0_9EURO_48697 are exactly identical! WARNING: Sequences tr_A0A0A2L729_A0A0A2L729_PENEN_27334 and tr_A0A1V6NE80_A0A1V6NE80_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A0A2L729_A0A0A2L729_PENEN_27334 and tr_A0A1V6R4N0_A0A1V6R4N0_9EURO_60172 are exactly identical! WARNING: Sequences tr_A0A0B4HIM3_A0A0B4HIM3_METMF_1276143 and tr_A0A0D9PC76_A0A0D9PC76_METAN_1291518 are exactly identical! WARNING: Sequences tr_A0A0D2RJX4_A0A0D2RJX4_GOSRA_29730 and tr_A0A1U8JN58_A0A1U8JN58_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0F8UTH1_A0A0F8UTH1_9EURO_308745 and tr_A0A2T5M5D8_A0A2T5M5D8_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0N0V8C7_A0A0N0V8C7_FUSLA_179993 and tr_I1RCK2_I1RCK2_GIBZE_229533 are exactly identical! WARNING: Sequences tr_A0A0N0V8C7_A0A0N0V8C7_FUSLA_179993 and tr_A0A2T4H7N2_A0A2T4H7N2_FUSCU_5516 are exactly identical! WARNING: Sequences tr_A0A0A1NZ20_A0A0A1NZ20_9FUNG_58291 and tr_A0A367J308_A0A367J308_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A0A1P1D7_A0A0A1P1D7_9FUNG_58291 and tr_A0A367K0G5_A0A367K0G5_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A151MFE1_A0A151MFE1_ALLMI_8496 and tr_A0A3Q0GM48_A0A3Q0GM48_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NUQ9_A0A151NUQ9_ALLMI_8496 and tr_A0A3Q0GJT1_A0A3Q0GJT1_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0D2G173_A0A0D2G173_9EURO_1442368 and tr_A0A0D2IBT3_A0A0D2IBT3_9EURO_1442371 are exactly identical! WARNING: Sequences tr_A0A0D2G173_A0A0D2G173_9EURO_1442368 and tr_A0A0D2CF53_A0A0D2CF53_9EURO_569365 are exactly identical! WARNING: Sequences tr_A0A0D2G173_A0A0D2G173_9EURO_1442368 and tr_A0A178Z748_A0A178Z748_9EURO_1367422 are exactly identical! WARNING: Sequences tr_A0A087R5M2_A0A087R5M2_APTFO_9233 and tr_A0A0A0ADI8_A0A0A0ADI8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0V0SA37_A0A0V0SA37_9BILA_6336 and tr_A0A0V1D7I4_A0A0V1D7I4_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0SA37_A0A0V0SA37_9BILA_6336 and tr_A0A0V0WU03_A0A0V0WU03_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0SA37_A0A0V0SA37_9BILA_6336 and tr_A0A0V0UU06_A0A0V0UU06_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0SA37_A0A0V0SA37_9BILA_6336 and tr_A0A0V1L129_A0A0V1L129_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0SA37_A0A0V0SA37_9BILA_6336 and tr_A0A0V0ZZJ6_A0A0V0ZZJ6_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0SA37_A0A0V0SA37_9BILA_6336 and tr_A0A0V1PCK9_A0A0V1PCK9_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0SA37_A0A0V0SA37_9BILA_6336 and tr_A0A0V0TRP0_A0A0V0TRP0_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1N5Q2_A0A0V1N5Q2_9BILA_268474 and tr_A0A0V1HIW0_A0A0V1HIW0_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A166MXA3_A0A166MXA3_9PEZI_708197 and tr_A0A161WNN6_A0A161WNN6_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_A0A1L9WER8_A0A1L9WER8_ASPAC_690307 and tr_A0A319CHN2_A0A319CHN2_9EURO_1448315 are exactly identical! WARNING: Sequences tr_A0A1L9WER8_A0A1L9WER8_ASPAC_690307 and tr_A0A2V5IUT6_A0A2V5IUT6_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A1L9WER8_A0A1L9WER8_ASPAC_690307 and tr_A0A395HG47_A0A395HG47_9EURO_1450537 are exactly identical! WARNING: Sequences tr_A0A1L9WER8_A0A1L9WER8_ASPAC_690307 and tr_A0A2V5H9U3_A0A2V5H9U3_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A1V8UZE8_A0A1V8UZE8_9PEZI_1974281 and tr_A0A1V8SY79_A0A1V8SY79_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A1V8UZE8_A0A1V8UZE8_9PEZI_1974281 and tr_A0A1V8T4W2_A0A1V8T4W2_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A2H3IA11_A0A2H3IA11_9EURO_290292 and tr_A0A364LCU4_A0A364LCU4_9EURO_1196081 are exactly identical! WARNING: Sequences tr_A0A2D0PPY7_A0A2D0PPY7_ICTPU_7998 and tr_W5UFV6_W5UFV6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PV12_A0A2D0PV12_ICTPU_7998 and tr_A0A2D0PWP6_A0A2D0PWP6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PV12_A0A2D0PV12_ICTPU_7998 and tr_A0A2D0PXJ9_A0A2D0PXJ9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0PZ58_A0A2D0PZ58_ICTPU_7998 and tr_A0A2D0PZ76_A0A2D0PZ76_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QAZ5_A0A2D0QAZ5_ICTPU_7998 and tr_A0A2D0QC32_A0A2D0QC32_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QAZ5_A0A2D0QAZ5_ICTPU_7998 and tr_A0A2D0QC35_A0A2D0QC35_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QAZ5_A0A2D0QAZ5_ICTPU_7998 and tr_A0A2D0QC39_A0A2D0QC39_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QAZ5_A0A2D0QAZ5_ICTPU_7998 and tr_A0A2D0QER6_A0A2D0QER6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QAZ5_A0A2D0QAZ5_ICTPU_7998 and tr_A0A2D0QES1_A0A2D0QES1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QC42_A0A2D0QC42_ICTPU_7998 and tr_A0A2D0QC48_A0A2D0QC48_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QC42_A0A2D0QC42_ICTPU_7998 and tr_A0A2D0QDR3_A0A2D0QDR3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RDS9_A0A2D0RDS9_ICTPU_7998 and tr_A0A2D0RFM2_A0A2D0RFM2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2J6T0F7_A0A2J6T0F7_9HELO_1095630 and tr_A0A2J6RKH0_A0A2J6RKH0_9HELO_1149755 are exactly identical! WARNING: Sequences tr_A0A2N5T7M2_A0A2N5T7M2_9BASI_200324 and tr_A0A2N5W900_A0A2N5W900_9BASI_200324 are exactly identical! WARNING: Sequences tr_A0A2S7Q8C4_A0A2S7Q8C4_9HELO_2070414 and tr_A0A2S7R4X7_A0A2S7R4X7_9HELO_2070412 are exactly identical! WARNING: Sequences tr_A0A2G4SR53_A0A2G4SR53_9FUNG_1340429 and tr_A0A367K0W5_A0A367K0W5_9FUNG_86630 are exactly identical! WARNING: Duplicate sequences found: 149 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05193/3_mltree/Q05193.raxml.reduced.phy Alignment comprises 1 partitions and 405 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 405 / 405 Gaps: 2.18 % Invariant sites: 2.47 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05193/3_mltree/Q05193.raxml.rba Parallelization scheme autoconfig: 3 worker(s) x 2 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 203 / 16240 [00:00:00] Data distribution: max. searches per worker: 7 Starting ML tree search with 20 distinct starting trees [00:00:00 -487564.930755] Initial branch length optimization [00:00:05 -390929.226874] Model parameter optimization (eps = 10.000000) [00:00:48 -389671.448065] AUTODETECT spr round 1 (radius: 5) [00:03:53 -230190.925916] AUTODETECT spr round 2 (radius: 10) [00:07:01 -168128.131421] AUTODETECT spr round 3 (radius: 15) [00:10:08 -143082.862207] AUTODETECT spr round 4 (radius: 20) [00:13:50 -119865.135868] AUTODETECT spr round 5 (radius: 25) [00:17:58 -112205.486969] SPR radius for FAST iterations: 25 (autodetect) [00:17:58 -112205.486969] Model parameter optimization (eps = 3.000000) [00:18:24 -112017.354734] FAST spr round 1 (radius: 25) [00:21:32 -90700.283640] FAST spr round 2 (radius: 25) [00:23:49 -87395.349876] FAST spr round 3 (radius: 25) [00:25:50 -84480.906204] FAST spr round 4 (radius: 25) [00:27:47 -84094.786854] FAST spr round 5 (radius: 25) [00:29:38 -84079.674346] FAST spr round 6 (radius: 25) [00:31:24 -84077.830781] FAST spr round 7 (radius: 25) [00:33:08 -84077.830777] Model parameter optimization (eps = 1.000000) [00:33:21 -84075.157698] SLOW spr round 1 (radius: 5) [00:35:47 -84061.857806] SLOW spr round 2 (radius: 5) [00:38:08 -84060.717515] SLOW spr round 3 (radius: 5) [00:40:27 -84060.717501] SLOW spr round 4 (radius: 10) [00:42:57 -84058.992012] SLOW spr round 5 (radius: 5) [00:46:04 -84052.049659] SLOW spr round 6 (radius: 5) [00:48:47 -84046.114731] SLOW spr round 7 (radius: 5) [00:51:15 -84046.114267] SLOW spr round 8 (radius: 10) [00:53:42 -84046.114264] SLOW spr round 9 (radius: 15) [00:57:46 -84046.114264] SLOW spr round 10 (radius: 20) [01:04:06 -84046.114263] SLOW spr round 11 (radius: 25) [01:09:17] [worker #2] ML tree search #3, logLikelihood: -84055.714475 [01:11:53 -84046.114263] Model parameter optimization (eps = 0.100000) [01:12:05] [worker #0] ML tree search #1, logLikelihood: -84045.666092 [01:12:05 -486490.397085] Initial branch length optimization [01:12:10 -387783.595152] Model parameter optimization (eps = 10.000000) [01:12:57 -386621.984235] AUTODETECT spr round 1 (radius: 5) [01:16:04 -226756.984625] AUTODETECT spr round 2 (radius: 10) [01:19:11 -166706.648548] AUTODETECT spr round 3 (radius: 15) [01:22:21 -130263.109380] AUTODETECT spr round 4 (radius: 20) [01:25:54 -112065.949434] AUTODETECT spr round 5 (radius: 25) [01:29:46] [worker #1] ML tree search #2, logLikelihood: -84049.295930 [01:30:17 -107487.030245] SPR radius for FAST iterations: 25 (autodetect) [01:30:17 -107487.030245] Model parameter optimization (eps = 3.000000) [01:30:41 -107361.592128] FAST spr round 1 (radius: 25) [01:33:42 -84843.194173] FAST spr round 2 (radius: 25) [01:36:01 -84192.536467] FAST spr round 3 (radius: 25) [01:38:08 -84100.808515] FAST spr round 4 (radius: 25) [01:40:01 -84096.076949] FAST spr round 5 (radius: 25) [01:41:50 -84096.076556] Model parameter optimization (eps = 1.000000) [01:42:18 -84083.844794] SLOW spr round 1 (radius: 5) [01:44:51 -84057.179405] SLOW spr round 2 (radius: 5) [01:47:14 -84057.116204] SLOW spr round 3 (radius: 10) [01:49:43 -84051.192765] SLOW spr round 4 (radius: 5) [01:52:51 -84040.533843] SLOW spr round 5 (radius: 5) [01:55:35 -84039.291898] SLOW spr round 6 (radius: 5) [01:58:05 -84039.291804] SLOW spr round 7 (radius: 10) [02:00:31 -84039.291804] SLOW spr round 8 (radius: 15) [02:04:26 -84039.291804] SLOW spr round 9 (radius: 20) [02:10:38 -84038.695992] SLOW spr round 10 (radius: 5) [02:13:52 -84038.695989] SLOW spr round 11 (radius: 10) [02:16:40 -84038.695989] SLOW spr round 12 (radius: 15) [02:17:18] [worker #2] ML tree search #6, logLikelihood: -84041.892278 [02:20:19 -84038.695989] SLOW spr round 13 (radius: 20) [02:26:45 -84038.695989] SLOW spr round 14 (radius: 25) [02:34:23 -84038.695989] Model parameter optimization (eps = 0.100000) [02:34:31] [worker #0] ML tree search #4, logLikelihood: -84038.641468 [02:34:31 -481338.239197] Initial branch length optimization [02:34:37 -387158.250062] Model parameter optimization (eps = 10.000000) [02:35:16 -385990.386880] AUTODETECT spr round 1 (radius: 5) [02:38:19 -231728.035026] AUTODETECT spr round 2 (radius: 10) [02:41:36 -174118.354121] AUTODETECT spr round 3 (radius: 15) [02:44:54 -143789.225150] AUTODETECT spr round 4 (radius: 20) [02:48:39 -121235.830686] AUTODETECT spr round 5 (radius: 25) [02:52:38 -113569.480491] SPR radius for FAST iterations: 25 (autodetect) [02:52:38 -113569.480491] Model parameter optimization (eps = 3.000000) [02:53:01 -113448.601556] FAST spr round 1 (radius: 25) [02:56:11 -89289.340765] FAST spr round 2 (radius: 25) [02:58:43 -84624.538857] FAST spr round 3 (radius: 25) [02:59:46] [worker #1] ML tree search #5, logLikelihood: -84037.913198 [03:00:45 -84128.512027] FAST spr round 4 (radius: 25) [03:02:43 -84100.467030] FAST spr round 5 (radius: 25) [03:04:32 -84094.676824] FAST spr round 6 (radius: 25) [03:06:18 -84094.676808] Model parameter optimization (eps = 1.000000) [03:06:42 -84083.315716] SLOW spr round 1 (radius: 5) [03:09:08 -84057.667163] SLOW spr round 2 (radius: 5) [03:11:34 -84052.945447] SLOW spr round 3 (radius: 5) [03:13:59 -84052.189805] SLOW spr round 4 (radius: 5) [03:16:21 -84052.189684] SLOW spr round 5 (radius: 10) [03:18:48 -84046.998879] SLOW spr round 6 (radius: 5) [03:21:55 -84042.325193] SLOW spr round 7 (radius: 5) [03:24:25] [worker #2] ML tree search #9, logLikelihood: -84074.161844 [03:24:35 -84041.628684] SLOW spr round 8 (radius: 5) [03:27:05 -84041.628659] SLOW spr round 9 (radius: 10) [03:29:32 -84041.628658] SLOW spr round 10 (radius: 15) [03:33:29 -84041.628657] SLOW spr round 11 (radius: 20) [03:39:36 -84041.628656] SLOW spr round 12 (radius: 25) [03:47:09 -84041.628656] Model parameter optimization (eps = 0.100000) [03:47:24] [worker #0] ML tree search #7, logLikelihood: -84041.163775 [03:47:25 -488247.135705] Initial branch length optimization [03:47:30 -389834.614217] Model parameter optimization (eps = 10.000000) [03:48:10 -388552.782163] AUTODETECT spr round 1 (radius: 5) [03:51:13 -228310.741977] AUTODETECT spr round 2 (radius: 10) [03:54:16 -162447.456045] AUTODETECT spr round 3 (radius: 15) [03:57:31 -139353.008932] AUTODETECT spr round 4 (radius: 20) [04:01:15 -121213.005016] AUTODETECT spr round 5 (radius: 25) [04:05:52 -108881.875350] SPR radius for FAST iterations: 25 (autodetect) [04:05:52 -108881.875350] Model parameter optimization (eps = 3.000000) [04:06:15 -108728.983385] FAST spr round 1 (radius: 25) [04:09:38 -85669.663143] FAST spr round 2 (radius: 25) [04:09:52] [worker #1] ML tree search #8, logLikelihood: -84055.093526 [04:11:58 -84189.513022] FAST spr round 3 (radius: 25) [04:14:07 -84108.837219] FAST spr round 4 (radius: 25) [04:16:02 -84094.372079] FAST spr round 5 (radius: 25) [04:17:53 -84089.647022] FAST spr round 6 (radius: 25) [04:19:39 -84089.647020] Model parameter optimization (eps = 1.000000) [04:19:59 -84077.870989] SLOW spr round 1 (radius: 5) [04:22:28 -84051.081343] SLOW spr round 2 (radius: 5) [04:24:55 -84043.542887] SLOW spr round 3 (radius: 5) [04:27:21 -84042.987935] SLOW spr round 4 (radius: 5) [04:29:47 -84041.634190] SLOW spr round 5 (radius: 5) [04:32:06 -84041.634096] SLOW spr round 6 (radius: 10) [04:34:32 -84041.079668] SLOW spr round 7 (radius: 5) [04:37:34 -84039.781439] SLOW spr round 8 (radius: 5) [04:40:13 -84039.604401] SLOW spr round 9 (radius: 5) [04:42:42 -84037.390553] SLOW spr round 10 (radius: 5) [04:43:23] [worker #2] ML tree search #12, logLikelihood: -84051.969455 [04:45:05 -84037.390553] SLOW spr round 11 (radius: 10) [04:47:30 -84037.390552] SLOW spr round 12 (radius: 15) [04:51:28 -84035.910278] SLOW spr round 13 (radius: 5) [04:54:39 -84035.910094] SLOW spr round 14 (radius: 10) [04:57:23 -84035.910091] SLOW spr round 15 (radius: 15) [05:01:05 -84035.910091] SLOW spr round 16 (radius: 20) [05:07:26 -84035.910090] SLOW spr round 17 (radius: 25) [05:15:05 -84035.910090] Model parameter optimization (eps = 0.100000) [05:15:11] [worker #0] ML tree search #10, logLikelihood: -84035.878343 [05:15:12 -485073.781471] Initial branch length optimization [05:15:17 -387440.794233] Model parameter optimization (eps = 10.000000) [05:15:58 -386249.923562] AUTODETECT spr round 1 (radius: 5) [05:19:05 -228835.131823] AUTODETECT spr round 2 (radius: 10) [05:22:11 -163853.305170] AUTODETECT spr round 3 (radius: 15) [05:25:18 -134263.082028] AUTODETECT spr round 4 (radius: 20) [05:28:26] [worker #1] ML tree search #11, logLikelihood: -84047.638977 [05:29:04 -109579.334310] AUTODETECT spr round 5 (radius: 25) [05:33:24 -105282.041037] SPR radius for FAST iterations: 25 (autodetect) [05:33:24 -105282.041037] Model parameter optimization (eps = 3.000000) [05:33:47 -105119.695281] FAST spr round 1 (radius: 25) [05:36:48 -85110.228791] FAST spr round 2 (radius: 25) [05:38:59 -84168.704542] FAST spr round 3 (radius: 25) [05:41:06 -84119.730346] FAST spr round 4 (radius: 25) [05:43:01 -84102.564584] FAST spr round 5 (radius: 25) [05:44:49 -84102.564285] Model parameter optimization (eps = 1.000000) [05:45:09 -84091.054061] SLOW spr round 1 (radius: 5) [05:47:41 -84068.867869] SLOW spr round 2 (radius: 5) [05:50:05 -84064.258155] SLOW spr round 3 (radius: 5) [05:52:16 -84063.839900] SLOW spr round 4 (radius: 5) [05:54:26 -84063.839898] SLOW spr round 5 (radius: 10) [05:56:42 -84063.380724] SLOW spr round 6 (radius: 5) [05:58:03] [worker #2] ML tree search #15, logLikelihood: -84054.422736 [05:59:32 -84063.380617] SLOW spr round 7 (radius: 10) [06:02:02 -84063.380615] SLOW spr round 8 (radius: 15) [06:05:36 -84063.380517] SLOW spr round 9 (radius: 20) [06:11:52 -84063.380517] SLOW spr round 10 (radius: 25) [06:19:21 -84063.380516] Model parameter optimization (eps = 0.100000) [06:19:34] [worker #0] ML tree search #13, logLikelihood: -84062.990171 [06:19:34 -480138.514099] Initial branch length optimization [06:19:38 -384438.251575] Model parameter optimization (eps = 10.000000) [06:20:19 -383265.691469] AUTODETECT spr round 1 (radius: 5) [06:23:12 -226596.851396] AUTODETECT spr round 2 (radius: 10) [06:25:59 -161874.709636] AUTODETECT spr round 3 (radius: 15) [06:28:54 -128920.661359] AUTODETECT spr round 4 (radius: 20) [06:32:37 -121373.929992] AUTODETECT spr round 5 (radius: 25) [06:35:30] [worker #1] ML tree search #14, logLikelihood: -84031.687700 [06:37:02 -112649.746948] SPR radius for FAST iterations: 25 (autodetect) [06:37:02 -112649.746948] Model parameter optimization (eps = 3.000000) [06:37:27 -112491.431131] FAST spr round 1 (radius: 25) [06:40:40 -86794.970213] FAST spr round 2 (radius: 25) [06:43:01 -84381.301217] FAST spr round 3 (radius: 25) [06:45:04 -84103.494408] FAST spr round 4 (radius: 25) [06:46:55 -84090.267292] FAST spr round 5 (radius: 25) [06:48:34 -84090.267186] Model parameter optimization (eps = 1.000000) [06:48:50 -84071.870420] SLOW spr round 1 (radius: 5) [06:51:12 -84044.987728] SLOW spr round 2 (radius: 5) [06:53:30 -84042.705440] SLOW spr round 3 (radius: 5) [06:55:41 -84042.705306] SLOW spr round 4 (radius: 10) [06:57:57 -84042.705200] SLOW spr round 5 (radius: 15) [07:01:45 -84042.705199] SLOW spr round 6 (radius: 20) [07:05:11] [worker #2] ML tree search #18, logLikelihood: -84053.701068 [07:07:37 -84042.705196] SLOW spr round 7 (radius: 25) [07:14:40 -84042.705194] Model parameter optimization (eps = 0.100000) [07:14:48] [worker #0] ML tree search #16, logLikelihood: -84042.595609 [07:14:48 -477934.959898] Initial branch length optimization [07:14:54 -383044.106072] Model parameter optimization (eps = 10.000000) [07:15:38 -382006.010489] AUTODETECT spr round 1 (radius: 5) [07:18:30 -228408.455633] AUTODETECT spr round 2 (radius: 10) [07:21:13 -158168.102139] AUTODETECT spr round 3 (radius: 15) [07:24:11 -128870.549344] AUTODETECT spr round 4 (radius: 20) [07:27:24 -113212.916641] AUTODETECT spr round 5 (radius: 25) [07:31:25 -104558.470855] SPR radius for FAST iterations: 25 (autodetect) [07:31:25 -104558.470855] Model parameter optimization (eps = 3.000000) [07:31:48 -104433.566727] FAST spr round 1 (radius: 25) [07:34:26 -85173.387405] FAST spr round 2 (radius: 25) [07:36:28 -84212.559360] FAST spr round 3 (radius: 25) [07:38:24 -84124.515615] FAST spr round 4 (radius: 25) [07:39:03] [worker #1] ML tree search #17, logLikelihood: -84033.542445 [07:40:10 -84120.469785] FAST spr round 5 (radius: 25) [07:41:50 -84119.523563] FAST spr round 6 (radius: 25) [07:43:29 -84119.523561] Model parameter optimization (eps = 1.000000) [07:43:50 -84106.164051] SLOW spr round 1 (radius: 5) [07:46:06 -84071.823297] SLOW spr round 2 (radius: 5) [07:48:21 -84067.242057] SLOW spr round 3 (radius: 5) [07:50:31 -84067.241649] SLOW spr round 4 (radius: 10) [07:52:46 -84062.975924] SLOW spr round 5 (radius: 5) [07:55:36 -84062.975923] SLOW spr round 6 (radius: 10) [07:58:03 -84062.975922] SLOW spr round 7 (radius: 15) [08:01:32 -84062.336851] SLOW spr round 8 (radius: 5) [08:04:31 -84062.336783] SLOW spr round 9 (radius: 10) [08:07:05 -84062.336782] SLOW spr round 10 (radius: 15) [08:10:30 -84062.336781] SLOW spr round 11 (radius: 20) [08:16:32 -84062.336781] SLOW spr round 12 (radius: 25) [08:23:46 -84062.336780] Model parameter optimization (eps = 0.100000) [08:23:57] [worker #0] ML tree search #19, logLikelihood: -84061.591418 [08:37:22] [worker #1] ML tree search #20, logLikelihood: -84050.190136 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.312685,0.395613) (0.266713,0.550419) (0.291495,1.183491) (0.129108,2.978226) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -84031.687700 AIC score: 172073.375400 / AICc score: 8216133.375400 / BIC score: 180101.168969 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=405). This might lead to overfitting and compromise tree inference results! Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05193/3_mltree/Q05193.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05193/3_mltree/Q05193.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05193/3_mltree/Q05193.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q05193/3_mltree/Q05193.raxml.log Analysis started: 04-Jul-2021 08:46:12 / finished: 04-Jul-2021 17:23:34 Elapsed time: 31042.739 seconds Consumed energy: 2890.861 Wh (= 14 km in an electric car, or 72 km with an e-scooter!)