RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jun-2021 01:48:10 as follows: raxml-ng --ancestral --msa /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05066/2_msa/Q05066_nogap_msa.fasta --tree /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05066/3_mltree/Q05066.raxml.bestTree_unrooted --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05066/4_raxmlng_ancestral/Q05066 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622674090 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05066/2_msa/Q05066_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 204 sites WARNING: Sequences tr_B4QJY1_B4QJY1_DROSI_7240 and tr_B4HHC5_B4HHC5_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QJY2_B4QJY2_DROSI_7240 and tr_B4HHC6_B4HHC6_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QJY4_B4QJY4_DROSI_7240 and tr_B4HHC8_B4HHC8_DROSE_7238 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_C3VV16_C3VV16_ORYLA_8090 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_M4AYX6_M4AYX6_XIPMA_8083 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_A0A087YSU3_A0A087YSU3_POEFO_48698 are exactly identical! WARNING: Sequences sp_Q32PP9_SOX14_DANRE_7955 and tr_A0A2U9C5L8_A0A2U9C5L8_SCOMX_52904 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_H0ZJW3_H0ZJW3_TAEGU_59729 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_U3KIZ4_U3KIZ4_FICAL_59894 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A0Q3PJC3_A0A0Q3PJC3_AMAAE_12930 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A091EYU2_A0A091EYU2_CORBR_85066 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A093PXB6_A0A093PXB6_9PASS_328815 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A093HWE3_A0A093HWE3_STRCA_441894 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A091GLG9_A0A091GLG9_9AVES_55661 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A0A0A2A4_A0A0A0A2A4_CHAVO_50402 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A2I0MBE9_A0A2I0MBE9_COLLI_8932 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A226MZU5_A0A226MZU5_CALSU_9009 are exactly identical! WARNING: Sequences sp_P48430_SOX2_CHICK_9031 and tr_A0A226PSS4_A0A226PSS4_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q9W7R5_SOX21_CHICK_9031 and tr_A0A226M6J9_A0A226M6J9_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q9W7R5_SOX21_CHICK_9031 and tr_A0A226NYS8_A0A226NYS8_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and sp_Q04892_SOX14_MOUSE_10090 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_M3Z4N2_M3Z4N2_MUSPF_9669 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G1SBJ0_G1SBJ0_NOMLE_61853 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G3RDD2_G3RDD2_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_H2PBI9_H2PBI9_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2I3TV57_A0A2I3TV57_PANTR_9598 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_W5Q1Z3_W5Q1Z3_SHEEP_9940 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_B7SZV3_B7SZV3_RAT_10116 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A287D385_A0A287D385_ICTTR_43179 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_H0WE30_H0WE30_CAVPO_10141 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and sp_O95416_SOX14_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_F7HQE3_F7HQE3_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G5BC40_G5BC40_HETGA_10181 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G3SSE7_G3SSE7_LOXAF_9785 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_H0Z8W5_H0Z8W5_TAEGU_59729 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2R8P701_A0A2R8P701_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_G7P040_G7P040_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_L5KZV5_L5KZV5_PTEAL_9402 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2I2U9L9_A0A2I2U9L9_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_U3KIG3_U3KIG3_FICAL_59894 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_U3HYI1_U3HYI1_ANAPL_8839 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A096MSU2_A0A096MSU2_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A091EBT3_A0A091EBT3_FUKDA_885580 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A0D9SC48_A0A0D9SC48_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A151NGX8_A0A151NGX8_ALLMI_8496 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A0Q3PLH6_A0A0Q3PLH6_AMAAE_12930 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A093Q8L4_A0A093Q8L4_9PASS_328815 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A091UW48_A0A091UW48_NIPNI_128390 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A093J9H0_A0A093J9H0_STRCA_441894 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A091XRL3_A0A091XRL3_OPIHO_30419 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A0A0AMQ0_A0A0A0AMQ0_CHAVO_50402 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A093GCB4_A0A093GCB4_DRYPU_118200 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A091HR26_A0A091HR26_CALAN_9244 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1S2ZMY7_A0A1S2ZMY7_ERIEU_9365 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1S3GQ94_A0A1S3GQ94_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1U7T8B1_A0A1U7T8B1_TARSY_1868482 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1U7RC23_A0A1U7RC23_ALLSI_38654 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1U7QSF6_A0A1U7QSF6_MESAU_10036 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A1V4KQX0_A0A1V4KQX0_PATFA_372326 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A226NCN2_A0A226NCN2_CALSU_9009 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A226PUW5_A0A226PUW5_COLVI_9014 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2K5KS53_A0A2K5KS53_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2K6ANL6_A0A2K6ANL6_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2K5XVC7_A0A2K5XVC7_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2R8ZCF2_A0A2R8ZCF2_PANPA_9597 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2U4B8W6_A0A2U4B8W6_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2U3WV20_A0A2U3WV20_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2U3X925_A0A2U3X925_LEPWE_9713 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2Y9DUM9_A0A2Y9DUM9_TRIMA_127582 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2Y9KGL2_A0A2Y9KGL2_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2Y9NT43_A0A2Y9NT43_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A2Y9FBD0_A0A2Y9FBD0_PHYCD_9755 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A384DHB9_A0A384DHB9_URSMA_29073 are exactly identical! WARNING: Sequences sp_Q9W7R6_SOX14_CHICK_9031 and tr_A0A383Z5H6_A0A383Z5H6_BALAS_310752 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_D4A543_D4A543_RAT_10116 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_F7H274_F7H274_CALJA_9483 are exactly identical! WARNING: Sequences sp_P48432_SOX2_MOUSE_10090 and tr_A0A1U7QKX9_A0A1U7QKX9_MESAU_10036 are exactly identical! WARNING: Sequences sp_P53783_SOX1_MOUSE_10090 and tr_H2NKC4_H2NKC4_PONAB_9601 are exactly identical! WARNING: Sequences sp_P53783_SOX1_MOUSE_10090 and tr_H2RHV2_H2RHV2_PANTR_9598 are exactly identical! WARNING: Sequences sp_P53783_SOX1_MOUSE_10090 and sp_O00570_SOX1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_P53783_SOX1_MOUSE_10090 and tr_A0A2R8MBT0_A0A2R8MBT0_CALJA_9483 are exactly identical! WARNING: Sequences sp_P53783_SOX1_MOUSE_10090 and tr_A0A2K5L4X5_A0A2K5L4X5_CERAT_9531 are exactly identical! WARNING: Sequences sp_P53783_SOX1_MOUSE_10090 and tr_A0A2U3WL47_A0A2U3WL47_ODORO_9708 are exactly identical! WARNING: Sequences sp_P53783_SOX1_MOUSE_10090 and tr_A0A2Y9JDD2_A0A2Y9JDD2_ENHLU_391180 are exactly identical! WARNING: Sequences sp_P53783_SOX1_MOUSE_10090 and tr_A0A2Y9NSQ8_A0A2Y9NSQ8_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q811W0_SOX21_MOUSE_10090 and tr_G3RV32_G3RV32_GORGO_9595 are exactly identical! WARNING: Sequences sp_Q811W0_SOX21_MOUSE_10090 and tr_H2NK54_H2NK54_PONAB_9601 are exactly identical! WARNING: Sequences sp_Q811W0_SOX21_MOUSE_10090 and sp_Q9Y651_SOX21_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q811W0_SOX21_MOUSE_10090 and tr_A0A1D5Q2F1_A0A1D5Q2F1_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q811W0_SOX21_MOUSE_10090 and tr_A0A2R8M5Q0_A0A2R8M5Q0_CALJA_9483 are exactly identical! WARNING: Sequences sp_Q811W0_SOX21_MOUSE_10090 and tr_F2Z520_F2Z520_PIG_9823 are exactly identical! WARNING: Sequences sp_Q811W0_SOX21_MOUSE_10090 and tr_A0A337SPQ4_A0A337SPQ4_FELCA_9685 are exactly identical! WARNING: Sequences sp_Q811W0_SOX21_MOUSE_10090 and tr_A0A0D9SA80_A0A0D9SA80_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q811W0_SOX21_MOUSE_10090 and tr_A0A0Q3M4K4_A0A0Q3M4K4_AMAAE_12930 are exactly identical! WARNING: Sequences sp_Q811W0_SOX21_MOUSE_10090 and tr_A0A2K5KLQ7_A0A2K5KLQ7_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q811W0_SOX21_MOUSE_10090 and tr_A0A2K6ARY4_A0A2K6ARY4_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q811W0_SOX21_MOUSE_10090 and tr_A0A2U4A6V4_A0A2U4A6V4_TURTR_9739 are exactly identical! WARNING: Sequences sp_Q811W0_SOX21_MOUSE_10090 and tr_A0A2U3WIY9_A0A2U3WIY9_ODORO_9708 are exactly identical! WARNING: Sequences sp_Q811W0_SOX21_MOUSE_10090 and tr_A0A2Y9JDE3_A0A2Y9JDE3_ENHLU_391180 are exactly identical! WARNING: Sequences sp_Q811W0_SOX21_MOUSE_10090 and tr_A0A2Y9NI67_A0A2Y9NI67_DELLE_9749 are exactly identical! WARNING: Sequences sp_Q811W0_SOX21_MOUSE_10090 and tr_A0A2Y9STB0_A0A2Y9STB0_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3YDA1_M3YDA1_MUSPF_9669 and tr_A0A2Y9L2S9_A0A2Y9L2S9_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YK79_M3YK79_MUSPF_9669 and tr_E1BHN5_E1BHN5_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M9PCZ7_M9PCZ7_DROME_7227 and tr_B4HYR3_B4HYR3_DROSE_7238 are exactly identical! WARNING: Sequences tr_G1SB06_G1SB06_NOMLE_61853 and tr_H2PWZ3_H2PWZ3_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1SB06_G1SB06_NOMLE_61853 and tr_A0A0D9SA17_A0A0D9SA17_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1SB06_G1SB06_NOMLE_61853 and tr_A0A2K5L3J4_A0A2K5L3J4_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1SBA9_G1SBA9_NOMLE_61853 and tr_H2PC44_H2PC44_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1SBA9_G1SBA9_NOMLE_61853 and tr_H2R486_H2R486_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1SBA9_G1SBA9_NOMLE_61853 and tr_H0Y203_H0Y203_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G1SBA9_G1SBA9_NOMLE_61853 and tr_B8XIA2_B8XIA2_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1SBA9_G1SBA9_NOMLE_61853 and tr_B1PXF9_B1PXF9_PIG_9823 are exactly identical! WARNING: Sequences tr_G1SBA9_G1SBA9_NOMLE_61853 and tr_A0A096NUA5_A0A096NUA5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1SBA9_G1SBA9_NOMLE_61853 and tr_A0A0D9SC13_A0A0D9SC13_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1SBA9_G1SBA9_NOMLE_61853 and tr_A0A2K5KW19_A0A2K5KW19_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1SBA9_G1SBA9_NOMLE_61853 and tr_A0A2K6B307_A0A2K6B307_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3HJZ4_G3HJZ4_CRIGR_10029 and tr_A0A1S2ZF16_A0A1S2ZF16_ERIEU_9365 are exactly identical! WARNING: Sequences tr_A0A2I2ZX24_A0A2I2ZX24_GORGO_9595 and tr_A0A2I3TNT6_A0A2I3TNT6_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZX24_A0A2I2ZX24_GORGO_9595 and tr_H0XGP9_H0XGP9_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A0A2I2ZX24_A0A2I2ZX24_GORGO_9595 and sp_P35716_SOX11_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZX24_A0A2I2ZX24_GORGO_9595 and tr_A0A1D5R7Q8_A0A1D5R7Q8_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I2ZX24_A0A2I2ZX24_GORGO_9595 and tr_A0A0D9S9T7_A0A0D9S9T7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2ZX24_A0A2I2ZX24_GORGO_9595 and tr_A0A2K5L0J2_A0A2K5L0J2_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QS49_G3QS49_GORGO_9595 and sp_Q9BT81_SOX7_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QS49_G3QS49_GORGO_9595 and tr_A0A2K5M610_A0A2K5M610_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QS49_G3QS49_GORGO_9595 and tr_A0A2K6CKJ3_A0A2K6CKJ3_MACNE_9545 are exactly identical! WARNING: Sequences tr_Q29JU4_Q29JU4_DROPS_46245 and tr_B4GJ51_B4GJ51_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2R1W3_E2R1W3_CANLF_9615 and sp_P54231_SOX2_SHEEP_9940 are exactly identical! WARNING: Sequences tr_E2R1W3_E2R1W3_CANLF_9615 and tr_A2VDX8_A2VDX8_BOVIN_9913 are exactly identical! WARNING: Sequences tr_E2R1W3_E2R1W3_CANLF_9615 and tr_D3U659_D3U659_FELCA_9685 are exactly identical! WARNING: Sequences tr_E2R1W3_E2R1W3_CANLF_9615 and tr_A0A1S3GJU6_A0A1S3GJU6_DIPOR_10020 are exactly identical! WARNING: Sequences tr_E2R1W3_E2R1W3_CANLF_9615 and tr_A0A2U3X3J9_A0A2U3X3J9_ODORO_9708 are exactly identical! WARNING: Sequences tr_E2R1W3_E2R1W3_CANLF_9615 and tr_A0A2U3XIJ2_A0A2U3XIJ2_LEPWE_9713 are exactly identical! WARNING: Sequences tr_E2R1W3_E2R1W3_CANLF_9615 and tr_A0A2Y9JY45_A0A2Y9JY45_ENHLU_391180 are exactly identical! WARNING: Sequences tr_E2R1W3_E2R1W3_CANLF_9615 and tr_A0A2Y9N1T3_A0A2Y9N1T3_DELLE_9749 are exactly identical! WARNING: Sequences tr_E2R1W3_E2R1W3_CANLF_9615 and tr_A0A2Y9FML7_A0A2Y9FML7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2I3TQ10_A0A2I3TQ10_PANTR_9598 and sp_P41225_SOX3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2J8KPH4_A0A2J8KPH4_PANTR_9598 and sp_O60248_SOX15_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2QW62_H2QW62_PANTR_9598 and sp_Q9H6I2_SOX17_HUMAN_9606 are exactly identical! WARNING: Sequences tr_F6XNT3_F6XNT3_MONDO_13616 and tr_G3WHS5_G3WHS5_SARHA_9305 are exactly identical! WARNING: Sequences tr_F7GJS8_F7GJS8_MONDO_13616 and tr_H0XS41_H0XS41_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M4A188_M4A188_XIPMA_8083 and tr_A0A087Y2X6_A0A087Y2X6_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AYL9_M4AYL9_XIPMA_8083 and tr_A0A087YS71_A0A087YS71_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4AYS5_M4AYS5_XIPMA_8083 and tr_I3KZ58_I3KZ58_ORENI_8128 are exactly identical! WARNING: Sequences tr_M4AYS5_M4AYS5_XIPMA_8083 and tr_A0A087YQH6_A0A087YQH6_POEFO_48698 are exactly identical! WARNING: Sequences tr_M4B0D0_M4B0D0_XIPMA_8083 and tr_I3KZS2_I3KZS2_ORENI_8128 are exactly identical! WARNING: Sequences tr_M4B0D0_M4B0D0_XIPMA_8083 and tr_A0A087YRN8_A0A087YRN8_POEFO_48698 are exactly identical! WARNING: Sequences tr_H9J0P2_H9J0P2_BOMMO_7091 and tr_A0A2A4JMT7_A0A2A4JMT7_HELVI_7102 are exactly identical! WARNING: Sequences tr_A0A158N8W1_A0A158N8W1_ATTCE_12957 and tr_A0A195B4M1_A0A195B4M1_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NLR6_A0A158NLR6_ATTCE_12957 and tr_A0A195CCA2_A0A195CCA2_9HYME_456900 are exactly identical! WARNING: Sequences tr_A0A158NLW3_A0A158NLW3_ATTCE_12957 and tr_A0A195BK79_A0A195BK79_9HYME_520822 are exactly identical! WARNING: Sequences tr_A4GU08_A4GU08_ORENI_8128 and tr_Q6WNT8_Q6WNT8_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A4GU08_A4GU08_ORENI_8128 and tr_Q4SV91_Q4SV91_TETNG_99883 are exactly identical! WARNING: Sequences tr_Q6WNU1_Q6WNU1_TAKRU_31033 and tr_Q4T665_Q4T665_TETNG_99883 are exactly identical! WARNING: Sequences tr_F6XQU8_F6XQU8_MACMU_9544 and tr_A0A2K6B2T8_A0A2K6B2T8_MACNE_9545 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V1CTP4_A0A0V1CTP4_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V0WVR9_A0A0V0WVR9_9BILA_92179 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V1LB14_A0A0V1LB14_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V0XYN1_A0A0V0XYN1_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V1PCW0_A0A0V1PCW0_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SIA6_E5SIA6_TRISP_6334 and tr_A0A0V0UCJ5_A0A0V0UCJ5_9BILA_144512 are exactly identical! WARNING: Sequences tr_K7EXN5_K7EXN5_PELSI_13735 and tr_A0A1U7RFS2_A0A1U7RFS2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_F4X2P5_F4X2P5_ACREC_103372 and tr_A0A151WN39_A0A151WN39_9HYME_64791 are exactly identical! WARNING: Sequences tr_F4X2P5_F4X2P5_ACREC_103372 and tr_A0A195DSD8_A0A195DSD8_9HYME_471704 are exactly identical! WARNING: Sequences sp_A4QNG3_SOX14_XENTR_8364 and tr_A0A1L8G4Z6_A0A1L8G4Z6_XENLA_8355 are exactly identical! WARNING: Sequences sp_A4QNG3_SOX14_XENTR_8364 and tr_A0A1L8GB57_A0A1L8GB57_XENLA_8355 are exactly identical! WARNING: Sequences tr_F1S9L1_F1S9L1_PIG_9823 and tr_A0A1S3AA59_A0A1S3AA59_ERIEU_9365 are exactly identical! WARNING: Sequences tr_I3LG51_I3LG51_PIG_9823 and tr_A0A2Y9SZ57_A0A2Y9SZ57_PHYCD_9755 are exactly identical! WARNING: Sequences tr_E3MC38_E3MC38_CAERE_31234 and tr_A0A261CMI7_A0A261CMI7_9PELO_1503980 are exactly identical! WARNING: Sequences tr_B4LG00_B4LG00_DROVI_7244 and tr_B4KV69_B4KV69_DROMO_7230 are exactly identical! WARNING: Sequences tr_L5JPP9_L5JPP9_PTEAL_9402 and tr_A0A2U3UZA2_A0A2U3UZA2_TURTR_9739 are exactly identical! WARNING: Sequences tr_R0KWE0_R0KWE0_ANAPL_8839 and tr_A0A087RJ12_A0A087RJ12_APTFO_9233 are exactly identical! WARNING: Sequences tr_W5NLJ8_W5NLJ8_LEPOC_7918 and tr_A0A1S3KK65_A0A1S3KK65_SALSA_8030 are exactly identical! WARNING: Sequences tr_W5NLJ8_W5NLJ8_LEPOC_7918 and tr_A0A060Y4B1_A0A060Y4B1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A0D9RQ99_A0A0D9RQ99_CHLSB_60711 and tr_A0A2K5LZ51_A0A2K5LZ51_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D9RQ99_A0A0D9RQ99_CHLSB_60711 and tr_A0A2K6CCT3_A0A2K6CCT3_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0K0FLP3_A0A0K0FLP3_STRVS_75913 and tr_A0A0N5CDG2_A0A0N5CDG2_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A151MVN3_A0A151MVN3_ALLMI_8496 and tr_A0A1U7SCR6_A0A1U7SCR6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3M1U9_A0A0Q3M1U9_AMAAE_12930 and tr_A0A091VWA1_A0A091VWA1_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A0Q3M1U9_A0A0Q3M1U9_AMAAE_12930 and tr_A0A1V4JN48_A0A1V4JN48_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0Q3M1U9_A0A0Q3M1U9_AMAAE_12930 and tr_A0A226NDZ2_A0A226NDZ2_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A0Q3M1U9_A0A0Q3M1U9_AMAAE_12930 and tr_A0A226P3V3_A0A226P3V3_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A091K6J2_A0A091K6J2_EGRGA_188379 and tr_A0A093GRJ8_A0A093GRJ8_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A194QP31_A0A194QP31_PAPMA_76193 and tr_A0A194QH57_A0A194QH57_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A091VCP5_A0A091VCP5_NIPNI_128390 and tr_A0A091GI12_A0A091GI12_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A093H204_A0A093H204_DRYPU_118200 and tr_A0A1V4KYG0_A0A1V4KYG0_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A093H204_A0A093H204_DRYPU_118200 and tr_A0A226MNQ9_A0A226MNQ9_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A0V1D2W4_A0A0V1D2W4_TRIBR_45882 and tr_A0A0V0WFH3_A0A0V0WFH3_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1D2W4_A0A0V1D2W4_TRIBR_45882 and tr_A0A0V0UUW4_A0A0V0UUW4_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1D2W4_A0A0V1D2W4_TRIBR_45882 and tr_A0A0V1LEQ7_A0A0V1LEQ7_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1D2W4_A0A0V1D2W4_TRIBR_45882 and tr_A0A0V1NLP6_A0A0V1NLP6_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1D2W4_A0A0V1D2W4_TRIBR_45882 and tr_A0A0V0TQT7_A0A0V0TQT7_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1MIS1_A0A0V1MIS1_9BILA_268474 and tr_A0A0V1HES5_A0A0V1HES5_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A151JCE1_A0A151JCE1_9HYME_471704 and tr_A0A195FP67_A0A195FP67_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A1S2ZZ84_A0A1S2ZZ84_ERIEU_9365 and tr_A0A1S3FPD6_A0A1S3FPD6_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A1S3PMG1_A0A1S3PMG1_SALSA_8030 and tr_A0A060WTL2_A0A060WTL2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3RTX5_A0A1S3RTX5_SALSA_8030 and tr_A0A1S3STQ3_A0A1S3STQ3_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3RTX5_A0A1S3RTX5_SALSA_8030 and tr_A0A060WMX3_A0A060WMX3_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3SEA8_A0A1S3SEA8_SALSA_8030 and tr_A0A060WAF2_A0A060WAF2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A2I4AY38_A0A2I4AY38_9TELE_52670 and tr_A0A2U9C5V8_A0A2U9C5V8_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A060YQG9_A0A060YQG9_ONCMY_8022 and tr_A0A060YR41_A0A060YR41_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226MLW0_A0A226MLW0_CALSU_9009 and tr_A0A226NYM5_A0A226NYM5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A226N304_A0A226N304_CALSU_9009 and tr_A0A226PFY6_A0A226PFY6_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2A2KF21_A0A2A2KF21_9BILA_2018661 and tr_A0A2A2LE29_A0A2A2LE29_9BILA_2018661 are exactly identical! WARNING: Sequences tr_A0A2K5NCK4_A0A2K5NCK4_CERAT_9531 and tr_A0A2K6A9Y5_A0A2K6A9Y5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2U4BY54_A0A2U4BY54_TURTR_9739 and tr_A0A2Y9SF24_A0A2Y9SF24_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3WM72_A0A2U3WM72_ODORO_9708 and tr_A0A2U3YER1_A0A2U3YER1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A2Y9PWG0_A0A2Y9PWG0_DELLE_9749 and tr_A0A383YUC3_A0A383YUC3_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9PYS2_A0A2Y9PYS2_DELLE_9749 and tr_A0A2Y9T6H2_A0A2Y9T6H2_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 209 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05066/4_raxmlng_ancestral/Q05066.raxml.reduced.phy Alignment comprises 1 partitions and 204 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 204 Gaps: 36.22 % Invariant sites: 5.39 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05066/4_raxmlng_ancestral/Q05066.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05066/3_mltree/Q05066.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 51 / 4080 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -47627.180342 [00:00:00 -47627.180342] Initial branch length optimization [00:00:00 -45055.472376] Model parameter optimization (eps = 0.100000) [00:00:28] Tree #1, final logLikelihood: -44935.279724 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.147267,0.066273) (0.122278,0.127002) (0.192406,0.489542) (0.538049,1.636504) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05066/4_raxmlng_ancestral/Q05066.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05066/4_raxmlng_ancestral/Q05066.raxml.ancestralStates Node-labeled tree saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05066/4_raxmlng_ancestral/Q05066.raxml.ancestralTree Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/020621_run/phylogeny-snakemake/results/Q05066/4_raxmlng_ancestral/Q05066.raxml.log Analysis started: 03-Jun-2021 01:48:10 / finished: 03-Jun-2021 01:48:40 Elapsed time: 30.380 seconds Consumed energy: 1.821 Wh