RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM

RAxML-NG was called at 01-Jul-2021 22:51:10 as follows:

raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q04721/2_msa/Q04721_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q04721/3_mltree/Q04721 --seed 2 --threads 8 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (8 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q04721/2_msa/Q04721_trimmed_msa.fasta
[00:00:00] Loaded alignment with 973 taxa and 622 sites

WARNING: Sequences tr_G3QN32_G3QN32_GORGO_9595 and sp_Q04721_NOTC2_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_G3QN32_G3QN32_GORGO_9595 and tr_A0A2R9AAN4_A0A2R9AAN4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2P116_H2P116_PONAB_9601 and sp_P78504_JAG1_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_H2P116_H2P116_PONAB_9601 and tr_I2CVK6_I2CVK6_MACMU_9544 are exactly identical!
WARNING: Sequences tr_H2P116_H2P116_PONAB_9601 and tr_A0A0D9RMJ0_A0A0D9RMJ0_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_H2P116_H2P116_PONAB_9601 and tr_A0A2K5NCU7_A0A2K5NCU7_CERAT_9531 are exactly identical!
WARNING: Sequences tr_H2P116_H2P116_PONAB_9601 and tr_A0A2K6D0I6_A0A2K6D0I6_MACNE_9545 are exactly identical!
WARNING: Sequences tr_H2P116_H2P116_PONAB_9601 and tr_A0A2K5Z203_A0A2K5Z203_MANLE_9568 are exactly identical!
WARNING: Sequences tr_H2P116_H2P116_PONAB_9601 and tr_A0A2R9AZ83_A0A2R9AZ83_PANPA_9597 are exactly identical!
WARNING: Sequences tr_B5DM97_B5DM97_DROPS_46245 and tr_B4GYL6_B4GYL6_DROPE_7234 are exactly identical!
WARNING: Sequences tr_H2QY65_H2QY65_PANTR_9598 and tr_A0A2R9BUT9_A0A2R9BUT9_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2RDK4_H2RDK4_PANTR_9598 and tr_A0A2R9AC37_A0A2R9AC37_PANPA_9597 are exactly identical!
WARNING: Sequences tr_A0A158NC55_A0A158NC55_ATTCE_12957 and tr_A0A151I3F6_A0A151I3F6_9HYME_520822 are exactly identical!
WARNING: Sequences sp_P0DPK3_NT2NB_HUMAN_9606 and sp_P0DPK4_NT2NC_HUMAN_9606 are exactly identical!
WARNING: Sequences sp_P0DPK3_NT2NB_HUMAN_9606 and sp_Q7Z3S9_NT2NA_HUMAN_9606 are exactly identical!
WARNING: Sequences tr_A0A1D5QEP8_A0A1D5QEP8_MACMU_9544 and tr_G7NX72_G7NX72_MACFA_9541 are exactly identical!
WARNING: Sequences tr_A0A1D5QEP8_A0A1D5QEP8_MACMU_9544 and tr_A0A2K5NLD8_A0A2K5NLD8_CERAT_9531 are exactly identical!
WARNING: Sequences tr_A0A1D5QEP8_A0A1D5QEP8_MACMU_9544 and tr_A0A2K6BA81_A0A2K6BA81_MACNE_9545 are exactly identical!
WARNING: Sequences tr_F7H8I5_F7H8I5_MACMU_9544 and tr_G7PR57_G7PR57_MACFA_9541 are exactly identical!
WARNING: Sequences tr_F7H8I5_F7H8I5_MACMU_9544 and tr_A0A2K6BMN7_A0A2K6BMN7_MACNE_9545 are exactly identical!
WARNING: Sequences tr_H0ZRR3_H0ZRR3_TAEGU_59729 and tr_A0A218UYB1_A0A218UYB1_9PASE_299123 are exactly identical!
WARNING: Sequences tr_T1KYK2_T1KYK2_TETUR_32264 and tr_T1KYK7_T1KYK7_TETUR_32264 are exactly identical!
WARNING: Sequences tr_A0A087XCF6_A0A087XCF6_POEFO_48698 and tr_A0A087YHD2_A0A087YHD2_POEFO_48698 are exactly identical!
WARNING: Sequences tr_A0A2I0MP00_A0A2I0MP00_COLLI_8932 and tr_A0A1V4KAH5_A0A1V4KAH5_PATFA_372326 are exactly identical!
WARNING: Sequences tr_A0A0V1DF98_A0A0V1DF98_TRIBR_45882 and tr_A0A0V1PGV4_A0A0V1PGV4_9BILA_92180 are exactly identical!
WARNING: Sequences tr_A0A0V0WHN6_A0A0V0WHN6_9BILA_92179 and tr_A0A0V0WKH2_A0A0V0WKH2_9BILA_92179 are exactly identical!
WARNING: Sequences tr_A0A0V0WHN6_A0A0V0WHN6_9BILA_92179 and tr_A0A0V1LSM2_A0A0V1LSM2_9BILA_6335 are exactly identical!
WARNING: Sequences tr_A0A226NHG9_A0A226NHG9_CALSU_9009 and tr_A0A226P9S8_A0A226P9S8_COLVI_9014 are exactly identical!
WARNING: Sequences tr_A0A2D0PV16_A0A2D0PV16_ICTPU_7998 and tr_A0A2D0PXK5_A0A2D0PXK5_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0Q466_A0A2D0Q466_ICTPU_7998 and tr_W5UD53_W5UD53_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2U3V5R6_A0A2U3V5R6_TURTR_9739 and tr_A0A2Y9M4A2_A0A2Y9M4A2_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2U4A1Y3_A0A2U4A1Y3_TURTR_9739 and tr_A0A2Y9PB45_A0A2Y9PB45_DELLE_9749 are exactly identical!
WARNING: Sequences tr_A0A2Y9SNZ9_A0A2Y9SNZ9_PHYCD_9755 and tr_A0A383YR28_A0A383YR28_BALAS_310752 are exactly identical!
WARNING: Duplicate sequences found: 33

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q04721/3_mltree/Q04721.raxml.reduced.phy

Alignment comprises 1 partitions and 622 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 622 / 622
Gaps: 12.64 %
Invariant sites: 1.29 %


NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q04721/3_mltree/Q04721.raxml.rba

Parallelization scheme autoconfig: 4 worker(s) x 2 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 973 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 311 / 24880
[00:00:00] Data distribution: max. searches per worker: 5

Starting ML tree search with 20 distinct starting trees

[00:00:00 -894502.583765] Initial branch length optimization
[00:00:14 -767867.159995] Model parameter optimization (eps = 10.000000)
[00:01:35 -767198.939475] AUTODETECT spr round 1 (radius: 5)
[00:06:03 -568983.198074] AUTODETECT spr round 2 (radius: 10)
[00:11:04 -439929.663123] AUTODETECT spr round 3 (radius: 15)
[00:19:02 -388528.829912] AUTODETECT spr round 4 (radius: 20)
[00:25:12 -368046.013666] AUTODETECT spr round 5 (radius: 25)
[00:33:40 -359339.328649] SPR radius for FAST iterations: 25 (autodetect)
[00:33:40 -359339.328649] Model parameter optimization (eps = 3.000000)
[00:33:56 -359291.749622] FAST spr round 1 (radius: 25)
[00:43:04 -336207.597100] FAST spr round 2 (radius: 25)
[00:51:02 -331190.281770] FAST spr round 3 (radius: 25)
[00:57:34 -328871.091280] FAST spr round 4 (radius: 25)
[01:03:28 -328743.561443] FAST spr round 5 (radius: 25)
[01:08:24 -328737.088577] FAST spr round 6 (radius: 25)
[01:12:45 -328737.087984] Model parameter optimization (eps = 1.000000)
[01:13:30 -328697.099825] SLOW spr round 1 (radius: 5)
[01:19:54 -328607.681246] SLOW spr round 2 (radius: 5)
[01:26:05 -328600.800560] SLOW spr round 3 (radius: 5)
[01:31:42 -328600.738402] SLOW spr round 4 (radius: 10)
[01:39:06 -328578.065128] SLOW spr round 5 (radius: 5)
[01:46:15 -328570.542008] SLOW spr round 6 (radius: 5)
[01:52:24 -328570.286195] SLOW spr round 7 (radius: 5)
[01:58:08 -328570.286064] SLOW spr round 8 (radius: 10)
[02:04:56 -328564.705145] SLOW spr round 9 (radius: 5)
[02:11:51 -328562.623844] SLOW spr round 10 (radius: 5)
[02:17:54 -328562.623541] SLOW spr round 11 (radius: 10)
[02:25:04 -328560.553556] SLOW spr round 12 (radius: 5)
[02:32:11 -328560.553123] SLOW spr round 13 (radius: 10)
[02:40:27 -328560.553081] SLOW spr round 14 (radius: 15)
[02:55:48 -328557.109507] SLOW spr round 15 (radius: 5)
[03:03:40 -328552.764922] SLOW spr round 16 (radius: 5)
[03:10:24 -328552.764331] SLOW spr round 17 (radius: 10)
[03:18:16 -328552.723914] SLOW spr round 18 (radius: 15)
[03:33:52 -328551.519830] SLOW spr round 19 (radius: 5)
[03:41:50 -328545.505707] SLOW spr round 20 (radius: 5)
[03:48:38 -328545.505047] SLOW spr round 21 (radius: 10)
[03:56:32 -328545.504752] SLOW spr round 22 (radius: 15)
[04:12:16 -328544.927859] SLOW spr round 23 (radius: 5)
[04:16:49] [worker #2] ML tree search #3, logLikelihood: -328701.812867
[04:20:11 -328542.896773] SLOW spr round 24 (radius: 5)
[04:28:19 -328542.657205] SLOW spr round 25 (radius: 5)
[04:34:15 -328542.656523] SLOW spr round 26 (radius: 10)
[04:41:26 -328523.355248] SLOW spr round 27 (radius: 5)
[04:48:37 -328518.985599] SLOW spr round 28 (radius: 5)
[04:54:56 -328512.955511] SLOW spr round 29 (radius: 5)
[05:00:50 -328512.954943] SLOW spr round 30 (radius: 10)
[05:08:07 -328512.140991] SLOW spr round 31 (radius: 5)
[05:15:35 -328511.879501] SLOW spr round 32 (radius: 5)
[05:22:11 -328511.878858] SLOW spr round 33 (radius: 10)
[05:29:58 -328511.878567] SLOW spr round 34 (radius: 15)
[05:47:04 -328511.878283] SLOW spr round 35 (radius: 20)
[06:13:08 -328487.641592] SLOW spr round 36 (radius: 5)
[06:21:30 -328481.945819] SLOW spr round 37 (radius: 5)
[06:28:33 -328481.945785] SLOW spr round 38 (radius: 10)
[06:36:52 -328481.945751] SLOW spr round 39 (radius: 15)
[06:53:36 -328481.945717] SLOW spr round 40 (radius: 20)
[07:19:22 -328481.945683] SLOW spr round 41 (radius: 25)
[07:53:51 -328476.947697] SLOW spr round 42 (radius: 5)
[08:02:33 -328475.984328] SLOW spr round 43 (radius: 5)
[08:09:50 -328475.983912] SLOW spr round 44 (radius: 10)
[08:18:25 -328475.983872] SLOW spr round 45 (radius: 15)
[08:35:42 -328475.983838] SLOW spr round 46 (radius: 20)
[09:02:17 -328475.983804] SLOW spr round 47 (radius: 25)
[09:20:28] [worker #2] ML tree search #7, logLikelihood: -328631.001489
[09:37:03 -328475.983770] Model parameter optimization (eps = 0.100000)

[09:37:13] [worker #0] ML tree search #1, logLikelihood: -328475.946729

[09:37:13 -894451.822034] Initial branch length optimization
[09:37:25 -766892.208551] Model parameter optimization (eps = 10.000000)
[09:38:40 -766267.507121] AUTODETECT spr round 1 (radius: 5)
[09:43:51 -564785.880582] AUTODETECT spr round 2 (radius: 10)
[09:48:56 -440172.534465] AUTODETECT spr round 3 (radius: 15)
[09:55:24 -386601.301353] AUTODETECT spr round 4 (radius: 20)
[10:02:02 -367132.872961] AUTODETECT spr round 5 (radius: 25)
[10:09:59 -362986.041525] SPR radius for FAST iterations: 25 (autodetect)
[10:09:59 -362986.041525] Model parameter optimization (eps = 3.000000)
[10:10:38 -362859.277366] FAST spr round 1 (radius: 25)
[10:20:28 -331723.253711] FAST spr round 2 (radius: 25)
[10:28:48 -329044.102872] FAST spr round 3 (radius: 25)
[10:35:56 -328813.921751] FAST spr round 4 (radius: 25)
[10:42:05 -328763.205786] FAST spr round 5 (radius: 25)
[10:47:38 -328752.980859] FAST spr round 6 (radius: 25)
[10:52:48 -328737.313462] FAST spr round 7 (radius: 25)
[10:57:46 -328723.813058] FAST spr round 8 (radius: 25)
[11:02:23 -328721.771763] FAST spr round 9 (radius: 25)
[11:06:51 -328721.771468] Model parameter optimization (eps = 1.000000)
[11:07:33 -328703.145888] SLOW spr round 1 (radius: 5)
[11:14:20 -328593.209217] SLOW spr round 2 (radius: 5)
[11:21:03 -328581.848094] SLOW spr round 3 (radius: 5)
[11:27:21 -328581.766803] SLOW spr round 4 (radius: 10)
[11:35:31 -328574.789067] SLOW spr round 5 (radius: 5)
[11:43:25 -328561.528364] SLOW spr round 6 (radius: 5)
[11:50:14 -328561.451219] SLOW spr round 7 (radius: 10)
[11:58:56 -328539.415409] SLOW spr round 8 (radius: 5)
[12:02:00] [worker #1] ML tree search #2, logLikelihood: -328471.528691
[12:07:07 -328525.936051] SLOW spr round 9 (radius: 5)
[12:14:26 -328521.473138] SLOW spr round 10 (radius: 5)
[12:21:11 -328520.669166] SLOW spr round 11 (radius: 5)
[12:27:41 -328520.668956] SLOW spr round 12 (radius: 10)
[12:35:44 -328520.668922] SLOW spr round 13 (radius: 15)
[12:54:36 -328514.145873] SLOW spr round 14 (radius: 5)
[13:03:05 -328514.107257] SLOW spr round 15 (radius: 10)
[13:13:31 -328514.106557] SLOW spr round 16 (radius: 15)
[13:31:29 -328514.106461] SLOW spr round 17 (radius: 20)
[13:56:30] [worker #3] ML tree search #4, logLikelihood: -328519.784653
[13:59:47 -328510.751203] SLOW spr round 18 (radius: 5)
[14:08:47 -328508.930269] SLOW spr round 19 (radius: 5)
[14:16:23 -328508.817921] SLOW spr round 20 (radius: 5)
[14:23:29 -328508.309678] SLOW spr round 21 (radius: 5)
[14:30:10 -328508.308934] SLOW spr round 22 (radius: 10)
[14:38:44 -328508.308924] SLOW spr round 23 (radius: 15)
[14:58:08 -328508.308919] SLOW spr round 24 (radius: 20)
[15:27:27 -328507.386293] SLOW spr round 25 (radius: 5)
[15:36:13 -328506.823229] SLOW spr round 26 (radius: 5)
[15:43:45 -328506.822700] SLOW spr round 27 (radius: 10)
[15:53:45 -328498.369596] SLOW spr round 28 (radius: 5)
[16:01:59 -328480.454641] SLOW spr round 29 (radius: 5)
[16:09:13 -328477.405581] SLOW spr round 30 (radius: 5)
[16:15:43 -328477.405455] SLOW spr round 31 (radius: 10)
[16:23:58 -328475.433898] SLOW spr round 32 (radius: 5)
[16:31:50 -328474.839910] SLOW spr round 33 (radius: 5)
[16:38:41 -328474.839812] SLOW spr round 34 (radius: 10)
[16:47:18 -328474.839807] SLOW spr round 35 (radius: 15)
[17:05:06 -328454.498504] SLOW spr round 36 (radius: 5)
[17:13:34 -328454.193979] SLOW spr round 37 (radius: 5)
[17:20:49 -328454.193587] SLOW spr round 38 (radius: 10)
[17:29:57 -328454.193566] SLOW spr round 39 (radius: 15)
[17:48:10 -328450.324797] SLOW spr round 40 (radius: 5)
[17:56:51 -328444.272668] SLOW spr round 41 (radius: 5)
[18:04:00 -328442.201017] SLOW spr round 42 (radius: 5)
[18:10:39 -328442.200571] SLOW spr round 43 (radius: 10)
[18:18:56 -328442.200559] SLOW spr round 44 (radius: 15)
[18:36:06 -328442.200554] SLOW spr round 45 (radius: 20)
[18:39:03] [worker #1] ML tree search #6, logLikelihood: -328480.411601
[19:02:50 -328439.572582] SLOW spr round 46 (radius: 5)
[19:11:31 -328439.567381] SLOW spr round 47 (radius: 10)
[19:22:56 -328439.565910] SLOW spr round 48 (radius: 15)
[19:39:21 -328439.565498] SLOW spr round 49 (radius: 20)
[20:00:10] [worker #2] ML tree search #11, logLikelihood: -328476.751010
[20:05:49 -328439.565381] SLOW spr round 50 (radius: 25)
[20:40:18 -328438.791811] SLOW spr round 51 (radius: 5)
[20:49:08 -328438.788783] SLOW spr round 52 (radius: 10)
[21:00:57 -328438.788712] SLOW spr round 53 (radius: 15)
[21:17:30 -328438.788705] SLOW spr round 54 (radius: 20)
[21:43:21 -328438.788700] SLOW spr round 55 (radius: 25)
[22:17:38 -328438.788695] Model parameter optimization (eps = 0.100000)

[22:17:56] [worker #0] ML tree search #5, logLikelihood: -328438.395862

[22:17:56 -886215.375359] Initial branch length optimization
[22:18:13 -758609.164574] Model parameter optimization (eps = 10.000000)
[22:19:31 -758099.359466] AUTODETECT spr round 1 (radius: 5)
[22:24:00 -566270.039234] AUTODETECT spr round 2 (radius: 10)
[22:29:19 -454968.083829] AUTODETECT spr round 3 (radius: 15)
[22:37:51 -414104.993538] AUTODETECT spr round 4 (radius: 20)
[22:44:36 -380755.769423] AUTODETECT spr round 5 (radius: 25)
[22:52:05 -365009.947129] SPR radius for FAST iterations: 25 (autodetect)
[22:52:05 -365009.947129] Model parameter optimization (eps = 3.000000)
[22:52:45 -364931.482377] FAST spr round 1 (radius: 25)
[23:02:34 -331782.239343] FAST spr round 2 (radius: 25)
[23:11:52 -328959.893587] FAST spr round 3 (radius: 25)
[23:19:11 -328749.738877] FAST spr round 4 (radius: 25)
[23:25:48 -328634.422486] FAST spr round 5 (radius: 25)
[23:31:07 -328625.209092] FAST spr round 6 (radius: 25)
[23:35:51 -328625.208884] Model parameter optimization (eps = 1.000000)
[23:36:21 -328621.029676] SLOW spr round 1 (radius: 5)
[23:43:53 -328554.404998] SLOW spr round 2 (radius: 5)
[23:50:44 -328538.790497] SLOW spr round 3 (radius: 5)
[23:57:04 -328538.284653] SLOW spr round 4 (radius: 5)
[24:03:14 -328538.284565] SLOW spr round 5 (radius: 10)
[24:10:47 -328537.769907] SLOW spr round 6 (radius: 5)
[24:19:14 -328523.010168] SLOW spr round 7 (radius: 5)
[24:26:28 -328512.596440] SLOW spr round 8 (radius: 5)
[24:32:59 -328512.072407] SLOW spr round 9 (radius: 5)
[24:39:17 -328512.072322] SLOW spr round 10 (radius: 10)
[24:46:44 -328505.007795] SLOW spr round 11 (radius: 5)
[24:54:37 -328504.053831] SLOW spr round 12 (radius: 5)
[25:01:41 -328502.038425] SLOW spr round 13 (radius: 5)
[25:08:18 -328501.260176] SLOW spr round 14 (radius: 5)
[25:14:56 -328500.289342] SLOW spr round 15 (radius: 5)
[25:21:22 -328500.289253] SLOW spr round 16 (radius: 10)
[25:29:01 -328499.390559] SLOW spr round 17 (radius: 5)
[25:29:25] [worker #3] ML tree search #8, logLikelihood: -328442.205022
[25:37:15 -328492.281597] SLOW spr round 18 (radius: 5)
[25:44:19 -328492.016412] SLOW spr round 19 (radius: 5)
[25:50:45 -328492.016342] SLOW spr round 20 (radius: 10)
[25:58:36 -328492.016334] SLOW spr round 21 (radius: 15)
[26:16:23 -328468.074464] SLOW spr round 22 (radius: 5)
[26:25:29 -328459.812934] SLOW spr round 23 (radius: 5)
[26:32:54 -328459.042721] SLOW spr round 24 (radius: 5)
[26:39:41 -328459.042251] SLOW spr round 25 (radius: 10)
[26:47:59 -328455.676176] SLOW spr round 26 (radius: 5)
[26:56:28 -328446.084499] SLOW spr round 27 (radius: 5)
[27:03:44 -328445.823728] SLOW spr round 28 (radius: 5)
[27:10:34 -328445.822842] SLOW spr round 29 (radius: 10)
[27:18:52 -328445.822705] SLOW spr round 30 (radius: 15)
[27:36:16 -328442.140047] SLOW spr round 31 (radius: 5)
[27:45:07 -328439.575980] SLOW spr round 32 (radius: 5)
[27:52:31 -328439.575175] SLOW spr round 33 (radius: 10)
[28:01:28 -328439.574934] SLOW spr round 34 (radius: 15)
[28:18:18 -328439.574859] SLOW spr round 35 (radius: 20)
[28:43:48 -328431.003768] SLOW spr round 36 (radius: 5)
[28:46:15] [worker #2] ML tree search #15, logLikelihood: -328484.616289
[28:53:01 -328430.626674] SLOW spr round 37 (radius: 5)
[29:00:50 -328430.626584] SLOW spr round 38 (radius: 10)
[29:10:23 -328428.330143] SLOW spr round 39 (radius: 5)
[29:18:49 -328419.737754] SLOW spr round 40 (radius: 5)
[29:26:32 -328418.615742] SLOW spr round 41 (radius: 5)
[29:33:26 -328418.615546] SLOW spr round 42 (radius: 10)
[29:41:57 -328417.946877] SLOW spr round 43 (radius: 5)
[29:50:11 -328417.946599] SLOW spr round 44 (radius: 10)
[30:00:18 -328417.946590] SLOW spr round 45 (radius: 15)
[30:17:35 -328417.946582] SLOW spr round 46 (radius: 20)
[30:19:12] [worker #1] ML tree search #10, logLikelihood: -328502.434958
[30:44:44 -328417.062854] SLOW spr round 47 (radius: 5)
[30:54:10 -328416.396735] SLOW spr round 48 (radius: 5)
[31:02:05 -328416.396657] SLOW spr round 49 (radius: 10)
[31:11:40 -328412.357420] SLOW spr round 50 (radius: 5)
[31:19:56 -328411.465853] SLOW spr round 51 (radius: 5)
[31:27:08 -328411.465813] SLOW spr round 52 (radius: 10)
[31:35:47 -328411.465804] SLOW spr round 53 (radius: 15)
[31:52:59 -328411.265964] SLOW spr round 54 (radius: 5)
[32:01:59 -328411.265461] SLOW spr round 55 (radius: 10)
[32:12:46 -328411.265442] SLOW spr round 56 (radius: 15)
[32:29:50 -328411.265432] SLOW spr round 57 (radius: 20)
[32:56:18 -328411.265426] SLOW spr round 58 (radius: 25)
[32:59:42] [worker #3] ML tree search #12, logLikelihood: -328526.824674
[33:31:22 -328411.265426] Model parameter optimization (eps = 0.100000)

[33:31:52] [worker #0] ML tree search #9, logLikelihood: -328409.856028

[33:31:52 -891193.671396] Initial branch length optimization
[33:32:03 -764487.492604] Model parameter optimization (eps = 10.000000)
[33:33:08 -763794.222857] AUTODETECT spr round 1 (radius: 5)
[33:37:40 -566618.915895] AUTODETECT spr round 2 (radius: 10)
[33:42:50 -440682.525509] AUTODETECT spr round 3 (radius: 15)
[33:51:34 -386338.834398] AUTODETECT spr round 4 (radius: 20)
[33:57:56 -362996.170506] AUTODETECT spr round 5 (radius: 25)
[34:06:04 -354364.407237] SPR radius for FAST iterations: 25 (autodetect)
[34:06:04 -354364.407237] Model parameter optimization (eps = 3.000000)
[34:06:19 -354316.616148] FAST spr round 1 (radius: 25)
[34:15:37 -330388.914583] FAST spr round 2 (radius: 25)
[34:23:46 -328939.412913] FAST spr round 3 (radius: 25)
[34:30:41 -328763.819836] FAST spr round 4 (radius: 25)
[34:36:23 -328723.224792] FAST spr round 5 (radius: 25)
[34:41:17 -328706.057885] FAST spr round 6 (radius: 25)
[34:45:46 -328705.558220] FAST spr round 7 (radius: 25)
[34:50:01 -328705.557799] Model parameter optimization (eps = 1.000000)
[34:50:11 -328705.311870] SLOW spr round 1 (radius: 5)
[34:56:12 -328647.906795] SLOW spr round 2 (radius: 5)
[35:01:39 -328643.938171] SLOW spr round 3 (radius: 5)
[35:06:51 -328643.006543] SLOW spr round 4 (radius: 5)
[35:12:03 -328640.292812] SLOW spr round 5 (radius: 5)
[35:17:21 -328638.633636] SLOW spr round 6 (radius: 5)
[35:22:46 -328623.467849] SLOW spr round 7 (radius: 5)
[35:28:04 -328619.074870] SLOW spr round 8 (radius: 5)
[35:33:18 -328617.221587] SLOW spr round 9 (radius: 5)
[35:38:29 -328616.207815] SLOW spr round 10 (radius: 5)
[35:43:36 -328616.207595] SLOW spr round 11 (radius: 10)
[35:49:34 -328612.693290] SLOW spr round 12 (radius: 5)
[35:55:53 -328611.938582] SLOW spr round 13 (radius: 5)
[36:01:32 -328611.938558] SLOW spr round 14 (radius: 10)
[36:08:06 -328598.891802] SLOW spr round 15 (radius: 5)
[36:14:34 -328595.128411] SLOW spr round 16 (radius: 5)
[36:20:05 -328589.577193] SLOW spr round 17 (radius: 5)
[36:25:08 -328589.575731] SLOW spr round 18 (radius: 10)
[36:31:09 -328580.952663] SLOW spr round 19 (radius: 5)
[36:37:10 -328578.151167] SLOW spr round 20 (radius: 5)
[36:42:31 -328578.150973] SLOW spr round 21 (radius: 10)
[36:48:57 -328560.849052] SLOW spr round 22 (radius: 5)
[36:55:20 -328555.106520] SLOW spr round 23 (radius: 5)
[37:01:07 -328547.736223] SLOW spr round 24 (radius: 5)
[37:02:22] [worker #2] ML tree search #19, logLikelihood: -328436.963942
[37:06:25 -328547.735386] SLOW spr round 25 (radius: 10)
[37:12:32 -328541.679781] SLOW spr round 26 (radius: 5)
[37:18:46 -328541.054217] SLOW spr round 27 (radius: 5)
[37:24:20 -328541.053979] SLOW spr round 28 (radius: 10)
[37:30:43 -328538.527286] SLOW spr round 29 (radius: 5)
[37:37:00 -328535.038390] SLOW spr round 30 (radius: 5)
[37:42:37 -328534.634375] SLOW spr round 31 (radius: 5)
[37:47:41 -328534.634339] SLOW spr round 32 (radius: 10)
[37:53:29 -328531.682504] SLOW spr round 33 (radius: 5)
[37:55:06] [worker #1] ML tree search #14, logLikelihood: -328485.297709
[37:59:24 -328531.156034] SLOW spr round 34 (radius: 5)
[38:05:02 -328531.155957] SLOW spr round 35 (radius: 10)
[38:11:36 -328531.155950] SLOW spr round 36 (radius: 15)
[38:24:36 -328520.313042] SLOW spr round 37 (radius: 5)
[38:31:13] [worker #3] ML tree search #16, logLikelihood: -328570.448497
[38:31:22 -328516.953411] SLOW spr round 38 (radius: 5)
[38:37:14 -328516.953362] SLOW spr round 39 (radius: 10)
[38:44:04 -328516.806667] SLOW spr round 40 (radius: 5)
[38:50:30 -328512.134878] SLOW spr round 41 (radius: 5)
[38:56:14 -328511.051176] SLOW spr round 42 (radius: 5)
[39:01:40 -328511.050159] SLOW spr round 43 (radius: 10)
[39:08:00 -328511.050113] SLOW spr round 44 (radius: 15)
[39:21:33 -328498.990876] SLOW spr round 45 (radius: 5)
[39:28:22 -328496.510603] SLOW spr round 46 (radius: 5)
[39:34:22 -328491.989945] SLOW spr round 47 (radius: 5)
[39:39:52 -328491.989821] SLOW spr round 48 (radius: 10)
[39:46:14 -328491.861835] SLOW spr round 49 (radius: 5)
[39:52:39 -328487.110435] SLOW spr round 50 (radius: 5)
[39:58:23 -328487.110318] SLOW spr round 51 (radius: 10)
[40:05:03 -328483.510690] SLOW spr round 52 (radius: 5)
[40:11:29 -328476.786028] SLOW spr round 53 (radius: 5)
[40:17:13 -328476.715125] SLOW spr round 54 (radius: 10)
[40:23:45 -328475.731058] SLOW spr round 55 (radius: 5)
[40:30:06 -328473.682778] SLOW spr round 56 (radius: 5)
[40:35:48 -328473.682695] SLOW spr round 57 (radius: 10)
[40:42:16 -328473.682686] SLOW spr round 58 (radius: 15)
[40:55:16 -328473.579146] SLOW spr round 59 (radius: 5)
[41:01:53 -328469.092741] SLOW spr round 60 (radius: 5)
[41:07:25 -328469.092546] SLOW spr round 61 (radius: 10)
[41:13:44 -328469.092538] SLOW spr round 62 (radius: 15)
[41:26:11 -328469.092532] SLOW spr round 63 (radius: 20)
[41:44:34 -328460.247190] SLOW spr round 64 (radius: 5)
[41:51:09 -328459.626505] SLOW spr round 65 (radius: 5)
[41:56:51 -328459.453660] SLOW spr round 66 (radius: 5)
[42:02:17 -328459.453440] SLOW spr round 67 (radius: 10)
[42:08:19 -328458.615396] SLOW spr round 68 (radius: 5)
[42:14:40 -328457.341546] SLOW spr round 69 (radius: 5)
[42:19:58 -328457.341449] SLOW spr round 70 (radius: 10)
[42:26:23 -328457.341439] SLOW spr round 71 (radius: 15)
[42:39:20 -328457.341431] SLOW spr round 72 (radius: 20)
[42:56:52 -328457.341424] SLOW spr round 73 (radius: 25)
[43:19:55 -328447.540168] SLOW spr round 74 (radius: 5)
[43:27:03 -328446.000218] SLOW spr round 75 (radius: 5)
[43:33:09 -328445.999862] SLOW spr round 76 (radius: 10)
[43:40:10 -328445.999799] SLOW spr round 77 (radius: 15)
[43:52:56 -328445.999778] SLOW spr round 78 (radius: 20)
[44:11:27 -328445.999767] SLOW spr round 79 (radius: 25)
[44:34:48 -328445.999758] Model parameter optimization (eps = 0.100000)

[44:34:56] [worker #0] ML tree search #13, logLikelihood: -328445.966578

[44:34:56 -884047.980123] Initial branch length optimization
[44:35:04 -759204.779451] Model parameter optimization (eps = 10.000000)
[44:36:06 -758607.015236] AUTODETECT spr round 1 (radius: 5)
[44:40:37 -565644.328054] AUTODETECT spr round 2 (radius: 10)
[44:45:29 -441390.125014] AUTODETECT spr round 3 (radius: 15)
[44:51:17 -374653.584908] AUTODETECT spr round 4 (radius: 20)
[44:57:46 -353286.417142] AUTODETECT spr round 5 (radius: 25)
[45:05:47 -348029.880410] SPR radius for FAST iterations: 25 (autodetect)
[45:05:47 -348029.880410] Model parameter optimization (eps = 3.000000)
[45:06:30 -347928.269804] FAST spr round 1 (radius: 25)
[45:17:07 -329983.020571] FAST spr round 2 (radius: 25)
[45:21:06] [worker #1] ML tree search #18, logLikelihood: -328441.432085
[45:27:15 -328962.190363] FAST spr round 3 (radius: 25)
[45:36:02 -328734.524460] FAST spr round 4 (radius: 25)
[45:43:28 -328693.046221] FAST spr round 5 (radius: 25)
[45:45:56] [worker #3] ML tree search #20, logLikelihood: -328489.209531
[45:49:40 -328685.404852] FAST spr round 6 (radius: 25)
[45:55:13 -328685.404208] Model parameter optimization (eps = 1.000000)
[45:55:35 -328683.857012] SLOW spr round 1 (radius: 5)
[46:04:25 -328625.386572] SLOW spr round 2 (radius: 5)
[46:13:11 -328620.124662] SLOW spr round 3 (radius: 5)
[46:21:33 -328616.080127] SLOW spr round 4 (radius: 5)
[46:29:20 -328616.078671] SLOW spr round 5 (radius: 10)
[46:39:47 -328599.332720] SLOW spr round 6 (radius: 5)
[46:50:17 -328593.840752] SLOW spr round 7 (radius: 5)
[46:59:35 -328590.734594] SLOW spr round 8 (radius: 5)
[47:08:03 -328590.734466] SLOW spr round 9 (radius: 10)
[47:19:13 -328588.998544] SLOW spr round 10 (radius: 5)
[47:29:34 -328586.404672] SLOW spr round 11 (radius: 5)
[47:38:48 -328584.113261] SLOW spr round 12 (radius: 5)
[47:47:15 -328584.113098] SLOW spr round 13 (radius: 10)
[47:58:22 -328583.489527] SLOW spr round 14 (radius: 5)
[48:08:47 -328582.431345] SLOW spr round 15 (radius: 5)
[48:17:44 -328582.430916] SLOW spr round 16 (radius: 10)
[48:29:26 -328582.430884] SLOW spr round 17 (radius: 15)
[48:54:34 -328578.611429] SLOW spr round 18 (radius: 5)
[49:05:33 -328577.280131] SLOW spr round 19 (radius: 5)
[49:14:46 -328577.279756] SLOW spr round 20 (radius: 10)
[49:27:00 -328572.974777] SLOW spr round 21 (radius: 5)
[49:36:32 -328571.193451] SLOW spr round 22 (radius: 5)
[49:45:09 -328571.193246] SLOW spr round 23 (radius: 10)
[49:56:28 -328571.193228] SLOW spr round 24 (radius: 15)
[50:20:41 -328567.999206] SLOW spr round 25 (radius: 5)
[50:31:51 -328559.308199] SLOW spr round 26 (radius: 5)
[50:40:59 -328558.251666] SLOW spr round 27 (radius: 5)
[50:49:12 -328558.251081] SLOW spr round 28 (radius: 10)
[50:59:54 -328558.251042] SLOW spr round 29 (radius: 15)
[51:23:31 -328558.251009] SLOW spr round 30 (radius: 20)
[51:57:34 -328548.969259] SLOW spr round 31 (radius: 5)
[52:08:49 -328545.708314] SLOW spr round 32 (radius: 5)
[52:18:07 -328545.628473] SLOW spr round 33 (radius: 10)
[52:30:10 -328545.628164] SLOW spr round 34 (radius: 15)
[52:52:58 -328545.628129] SLOW spr round 35 (radius: 20)
[53:27:32 -328544.520476] SLOW spr round 36 (radius: 5)
[53:38:49 -328544.155374] SLOW spr round 37 (radius: 5)
[53:47:59 -328544.155134] SLOW spr round 38 (radius: 10)
[54:00:12 -328544.155128] SLOW spr round 39 (radius: 15)
[54:23:13 -328544.155125] SLOW spr round 40 (radius: 20)
[54:57:54 -328544.155122] SLOW spr round 41 (radius: 25)
[55:44:20 -328540.947530] SLOW spr round 42 (radius: 5)
[55:55:18 -328539.612964] SLOW spr round 43 (radius: 5)
[56:04:17 -328539.612004] SLOW spr round 44 (radius: 10)
[56:16:00 -328539.611788] SLOW spr round 45 (radius: 15)
[56:37:44 -328539.611735] SLOW spr round 46 (radius: 20)
[57:11:01 -328539.611720] SLOW spr round 47 (radius: 25)
[57:54:23 -328539.611714] Model parameter optimization (eps = 0.100000)

[57:54:54] [worker #0] ML tree search #17, logLikelihood: -328538.202933


Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.317644,0.219164) (0.067516,0.693091) (0.479658,1.180957) (0.135182,2.345971) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -328409.856028

AIC score: 660717.712055 / AICc score: 8261817.712055 / BIC score: 669357.512296
Free parameters (model + branch lengths): 1949

WARNING: Number of free parameters (K=1949) is larger than alignment size (n=622).
         This might lead to overfitting and compromise tree inference results!


Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q04721/3_mltree/Q04721.raxml.bestTree
All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q04721/3_mltree/Q04721.raxml.mlTrees
Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q04721/3_mltree/Q04721.raxml.bestModel

Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q04721/3_mltree/Q04721.raxml.log

Analysis started: 01-Jul-2021 22:51:10 / finished: 04-Jul-2021 08:46:04

Elapsed time: 208494.782 seconds

Consumed energy: 19520.104 Wh (= 98 km in an electric car, or 488 km with an e-scooter!)