RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, 28 cores, 251 GB RAM RAxML-NG was called at 03-Jul-2021 01:06:06 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q02750/2_msa/Q02750_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q02750/3_mltree/Q02750 --seed 2 --threads 6 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (6 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q02750/2_msa/Q02750_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 298 sites WARNING: Sequences tr_F1NYZ2_F1NYZ2_CHICK_9031 and sp_Q90891_MP2K2_CHICK_9031 are exactly identical! WARNING: Sequences tr_F1NYZ2_F1NYZ2_CHICK_9031 and tr_A0A226N322_A0A226N322_CALSU_9009 are exactly identical! WARNING: Sequences tr_F1NYZ2_F1NYZ2_CHICK_9031 and tr_A0A226NS89_A0A226NS89_COLVI_9014 are exactly identical! WARNING: Sequences tr_Q5ZIF0_Q5ZIF0_CHICK_9031 and tr_H0ZGH0_H0ZGH0_TAEGU_59729 are exactly identical! WARNING: Sequences tr_Q5ZIF0_Q5ZIF0_CHICK_9031 and tr_A0A0Q3MA74_A0A0Q3MA74_AMAAE_12930 are exactly identical! WARNING: Sequences tr_Q5ZIF0_Q5ZIF0_CHICK_9031 and tr_A0A2I0MD87_A0A2I0MD87_COLLI_8932 are exactly identical! WARNING: Sequences tr_Q5ZIF0_Q5ZIF0_CHICK_9031 and tr_A0A218V0K5_A0A218V0K5_9PASE_299123 are exactly identical! WARNING: Sequences tr_Q5ZIF0_Q5ZIF0_CHICK_9031 and tr_A0A226NNI4_A0A226NNI4_CALSU_9009 are exactly identical! WARNING: Sequences tr_M3XMR0_M3XMR0_MUSPF_9669 and tr_A0A2Y9K7U5_A0A2Y9K7U5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_B6HEN9_B6HEN9_PENRW_500485 and tr_A0A1V6XU77_A0A1V6XU77_PENNA_60175 are exactly identical! WARNING: Sequences tr_E3RVE1_E3RVE1_PYRTT_861557 and tr_B2VYQ3_B2VYQ3_PYRTR_426418 are exactly identical! WARNING: Sequences tr_E3RVE1_E3RVE1_PYRTT_861557 and tr_A0A2W1DGX9_A0A2W1DGX9_9PLEO_45151 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and tr_G3QM92_G3QM92_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and tr_H2NNJ6_H2NNJ6_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and sp_P29678_MP2K1_RABIT_9986 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and tr_A0A2I3RF04_A0A2I3RF04_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and sp_Q01986_MP2K1_RAT_10116 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and tr_H0XE68_H0XE68_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and sp_Q02750_MP2K1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and tr_A0A1D5QKD3_A0A1D5QKD3_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and tr_U3CZR8_U3CZR8_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and tr_A0A287BK75_A0A287BK75_PIG_9823 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and tr_Q0VD16_Q0VD16_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and tr_L5K149_L5K149_PTEAL_9402 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and tr_A0A2I3LF26_A0A2I3LF26_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and tr_A0A0D9RL74_A0A0D9RL74_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and tr_A0A2K5YWG9_A0A2K5YWG9_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and tr_A0A2R9A4U3_A0A2R9A4U3_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and tr_A0A2Y9P0A4_A0A2Y9P0A4_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and tr_A0A2Y9FRV8_A0A2Y9FRV8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2I3GXI0_A0A2I3GXI0_NOMLE_61853 and tr_A0A383YTE9_A0A383YTE9_BALAS_310752 are exactly identical! WARNING: Sequences tr_J3KH83_J3KH83_COCIM_246410 and tr_E9DJ21_E9DJ21_COCPS_443226 are exactly identical! WARNING: Sequences tr_J3KH83_J3KH83_COCIM_246410 and tr_A0A0J6Y042_A0A0J6Y042_COCIT_404692 are exactly identical! WARNING: Sequences tr_B6QTA9_B6QTA9_TALMQ_441960 and tr_A0A093XVT7_A0A093XVT7_TALMA_1077442 are exactly identical! WARNING: Sequences tr_A7EZM5_A7EZM5_SCLS1_665079 and tr_W9CA58_W9CA58_9HELO_1432307 are exactly identical! WARNING: Sequences tr_G3QPY6_G3QPY6_GORGO_9595 and tr_H2NNK7_H2NNK7_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QPY6_G3QPY6_GORGO_9595 and tr_H2Q9P0_H2Q9P0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QPY6_G3QPY6_GORGO_9595 and sp_Q13163_MP2K5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QPY6_G3QPY6_GORGO_9595 and tr_G7P8W8_G7P8W8_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3QPY6_G3QPY6_GORGO_9595 and tr_A0A0D9RLR5_A0A0D9RLR5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QPY6_G3QPY6_GORGO_9595 and tr_A0A2R9BFH4_A0A2R9BFH4_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R0F2_G3R0F2_GORGO_9595 and tr_K7BYT0_K7BYT0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R0F2_G3R0F2_GORGO_9595 and sp_P36507_MP2K2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G2XEP1_G2XEP1_VERDV_498257 and tr_A0A0G4M3P2_A0A0G4M3P2_9PEZI_100787 are exactly identical! WARNING: Sequences tr_G1MVE8_G1MVE8_MELGA_9103 and tr_A0A093JVU6_A0A093JVU6_STRCA_441894 are exactly identical! WARNING: Sequences tr_G1MVE8_G1MVE8_MELGA_9103 and tr_A0A099ZS38_A0A099ZS38_TINGU_94827 are exactly identical! WARNING: Sequences tr_V5ILY0_V5ILY0_NEUCR_367110 and tr_G4UGY5_G4UGY5_NEUT9_510952 are exactly identical! WARNING: Sequences tr_Q29IC0_Q29IC0_DROPS_46245 and tr_B4GW88_B4GW88_DROPE_7234 are exactly identical! WARNING: Sequences tr_B8NV54_B8NV54_ASPFN_332952 and tr_Q2U560_Q2U560_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8NV54_B8NV54_ASPFN_332952 and tr_A0A0F0IIS8_A0A0F0IIS8_ASPPU_1403190 are exactly identical! WARNING: Sequences tr_B8NV54_B8NV54_ASPFN_332952 and tr_A0A1S9DIH8_A0A1S9DIH8_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_B8NV54_B8NV54_ASPFN_332952 and tr_A0A2G7FI34_A0A2G7FI34_9EURO_656916 are exactly identical! WARNING: Sequences tr_A0A179V300_A0A179V300_BLAGS_559298 and tr_C5GMH6_C5GMH6_AJEDR_559297 are exactly identical! WARNING: Sequences tr_A0A179V300_A0A179V300_BLAGS_559298 and tr_A0A2B7WMN7_A0A2B7WMN7_9EURO_2060905 are exactly identical! WARNING: Sequences tr_J9P3W4_J9P3W4_CANLF_9615 and tr_A0A2U3WSI3_A0A2U3WSI3_ODORO_9708 are exactly identical! WARNING: Sequences tr_J9P5W6_J9P5W6_CANLF_9615 and tr_M3X621_M3X621_FELCA_9685 are exactly identical! WARNING: Sequences tr_J9P5W6_J9P5W6_CANLF_9615 and tr_A0A2U3WY84_A0A2U3WY84_ODORO_9708 are exactly identical! WARNING: Sequences tr_J9P5W6_J9P5W6_CANLF_9615 and tr_A0A2U3XED8_A0A2U3XED8_LEPWE_9713 are exactly identical! WARNING: Sequences tr_J9P5W6_J9P5W6_CANLF_9615 and tr_A0A384DIG4_A0A384DIG4_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I3RK43_A0A2I3RK43_PANTR_9598 and tr_A0A2I3SCZ4_A0A2I3SCZ4_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3RWN9_A0A2I3RWN9_PANTR_9598 and tr_A0A2R9CJT9_A0A2R9CJT9_PANPA_9597 are exactly identical! WARNING: Sequences tr_F7C4E9_F7C4E9_MONDO_13616 and tr_G3WNC5_G3WNC5_SARHA_9305 are exactly identical! WARNING: Sequences tr_W5PM87_W5PM87_SHEEP_9940 and tr_I3L5D4_I3L5D4_PIG_9823 are exactly identical! WARNING: Sequences tr_W5PM87_W5PM87_SHEEP_9940 and tr_Q17QH2_Q17QH2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5QAG1_W5QAG1_SHEEP_9940 and tr_A0A2Y9DHL9_A0A2Y9DHL9_TRIMA_127582 are exactly identical! WARNING: Sequences tr_W5QAG1_W5QAG1_SHEEP_9940 and tr_A0A2Y9NWM8_A0A2Y9NWM8_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5QAG1_W5QAG1_SHEEP_9940 and tr_A0A2Y9T0Q8_A0A2Y9T0Q8_PHYCD_9755 are exactly identical! WARNING: Sequences tr_W5QAG1_W5QAG1_SHEEP_9940 and tr_A0A383YTC6_A0A383YTC6_BALAS_310752 are exactly identical! WARNING: Sequences tr_F9FS15_F9FS15_FUSOF_660025 and tr_W7LXC3_W7LXC3_GIBM7_334819 are exactly identical! WARNING: Sequences tr_F9FS15_F9FS15_FUSOF_660025 and tr_A0A0D2XNJ1_A0A0D2XNJ1_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9FS15_F9FS15_FUSOF_660025 and tr_S0E1J8_S0E1J8_GIBF5_1279085 are exactly identical! WARNING: Sequences tr_F9FS15_F9FS15_FUSOF_660025 and tr_N4TJD5_N4TJD5_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9FS15_F9FS15_FUSOF_660025 and tr_X0CA42_X0CA42_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9FS15_F9FS15_FUSOF_660025 and tr_A0A2H3T3Q6_A0A2H3T3Q6_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9FS15_F9FS15_FUSOF_660025 and tr_A0A2H3HE94_A0A2H3HE94_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F9FS15_F9FS15_FUSOF_660025 and tr_A0A2K0WBF0_A0A2K0WBF0_GIBNY_42673 are exactly identical! WARNING: Sequences tr_F9FS15_F9FS15_FUSOF_660025 and tr_A0A365MYD3_A0A365MYD3_GIBIN_948311 are exactly identical! WARNING: Sequences tr_E9EWM2_E9EWM2_METRA_655844 and tr_A0A0D9NSQ6_A0A0D9NSQ6_METAN_1291518 are exactly identical! WARNING: Sequences tr_E9DXG6_E9DXG6_METAQ_655827 and tr_A0A0B4H5F2_A0A0B4H5F2_METMF_1276143 are exactly identical! WARNING: Sequences tr_J5JXF7_J5JXF7_BEAB2_655819 and tr_A0A0A2W2Q7_A0A0A2W2Q7_BEABA_1245745 are exactly identical! WARNING: Sequences tr_J5JXF7_J5JXF7_BEAB2_655819 and tr_A0A167HNN8_A0A167HNN8_9HYPO_1081107 are exactly identical! WARNING: Sequences tr_J5JXF7_J5JXF7_BEAB2_655819 and tr_A0A2N6NR94_A0A2N6NR94_BEABA_176275 are exactly identical! WARNING: Sequences tr_A0A3B5QDC0_A0A3B5QDC0_XIPMA_8083 and tr_A0A087X7K5_A0A087X7K5_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZMS8_M3ZMS8_XIPMA_8083 and tr_A0A087XR80_A0A087XR80_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A158NW28_A0A158NW28_ATTCE_12957 and tr_A0A195E334_A0A195E334_9HYME_471704 are exactly identical! WARNING: Sequences tr_A1D8B8_A1D8B8_NEOFI_331117 and tr_A0A0K8LBG4_A0A0K8LBG4_9EURO_91492 are exactly identical! WARNING: Sequences tr_A1D8B8_A1D8B8_NEOFI_331117 and tr_A0A0S7DQX4_A0A0S7DQX4_9EURO_293939 are exactly identical! WARNING: Sequences tr_A1D8B8_A1D8B8_NEOFI_331117 and tr_A0A229YJR8_A0A229YJR8_9EURO_1245748 are exactly identical! WARNING: Sequences tr_A1D8B8_A1D8B8_NEOFI_331117 and tr_A0A397GWV0_A0A397GWV0_9EURO_41047 are exactly identical! WARNING: Sequences tr_A1D8B8_A1D8B8_NEOFI_331117 and tr_A0A2I1C1T5_A0A2I1C1T5_9EURO_1392255 are exactly identical! WARNING: Sequences tr_A2QXY7_A2QXY7_ASPNC_425011 and tr_G7XFF6_G7XFF6_ASPKW_1033177 are exactly identical! WARNING: Sequences tr_A2QXY7_A2QXY7_ASPNC_425011 and tr_G3YC00_G3YC00_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2QXY7_A2QXY7_ASPNC_425011 and tr_A0A100IP26_A0A100IP26_ASPNG_5061 are exactly identical! WARNING: Sequences tr_A2QXY7_A2QXY7_ASPNC_425011 and tr_A0A146FRM4_A0A146FRM4_9EURO_1069201 are exactly identical! WARNING: Sequences tr_A2QXY7_A2QXY7_ASPNC_425011 and tr_A0A1L9N286_A0A1L9N286_ASPTU_767770 are exactly identical! WARNING: Sequences tr_A2QXY7_A2QXY7_ASPNC_425011 and tr_A0A1L9V375_A0A1L9V375_9EURO_767769 are exactly identical! WARNING: Sequences tr_A2QXY7_A2QXY7_ASPNC_425011 and tr_A0A317UZ94_A0A317UZ94_9EURO_1448314 are exactly identical! WARNING: Sequences tr_A2QXY7_A2QXY7_ASPNC_425011 and tr_A0A319B0F3_A0A319B0F3_9EURO_1450533 are exactly identical! WARNING: Sequences tr_E5SMI4_E5SMI4_TRISP_6334 and tr_A0A0V1D8C8_A0A0V1D8C8_TRIBR_45882 are exactly identical! WARNING: Sequences tr_E5SMI4_E5SMI4_TRISP_6334 and tr_A0A0V0VUV9_A0A0V0VUV9_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5SMI4_E5SMI4_TRISP_6334 and tr_A0A0V1L227_A0A0V1L227_9BILA_6335 are exactly identical! WARNING: Sequences tr_E5SMI4_E5SMI4_TRISP_6334 and tr_A0A0V0ZJR7_A0A0V0ZJR7_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5SMI4_E5SMI4_TRISP_6334 and tr_A0A0V0XR49_A0A0V0XR49_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5SMI4_E5SMI4_TRISP_6334 and tr_A0A0V1MID8_A0A0V1MID8_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5SMI4_E5SMI4_TRISP_6334 and tr_A0A0V1P2Z7_A0A0V1P2Z7_9BILA_92180 are exactly identical! WARNING: Sequences tr_E5SMI4_E5SMI4_TRISP_6334 and tr_A0A0V1HHM0_A0A0V1HHM0_9BILA_268475 are exactly identical! WARNING: Sequences tr_E5SMI4_E5SMI4_TRISP_6334 and tr_A0A0V0TSP9_A0A0V0TSP9_9BILA_144512 are exactly identical! WARNING: Sequences tr_F9WZV1_F9WZV1_ZYMTI_336722 and tr_A0A0F4GWY2_A0A0F4GWY2_9PEZI_1047168 are exactly identical! WARNING: Sequences tr_F9WZV1_F9WZV1_ZYMTI_336722 and tr_A0A1X7RDA9_A0A1X7RDA9_ZYMTR_1276538 are exactly identical! WARNING: Sequences tr_Q66JE6_Q66JE6_XENTR_8364 and tr_A0A1L8H157_A0A1L8H157_XENLA_8355 are exactly identical! WARNING: Sequences tr_G2XXL3_G2XXL3_BOTF4_999810 and tr_M7TCE6_M7TCE6_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_E3QE27_E3QE27_COLGM_645133 and tr_A0A1G4AXZ0_A0A1G4AXZ0_9PEZI_1209926 are exactly identical! WARNING: Sequences tr_F2SHL8_F2SHL8_TRIRC_559305 and tr_A0A178F049_A0A178F049_TRIRU_5551 are exactly identical! WARNING: Sequences tr_D4ASJ5_D4ASJ5_ARTBC_663331 and tr_A0A059J013_A0A059J013_9EURO_1215338 are exactly identical! WARNING: Sequences tr_G1LEH7_G1LEH7_AILME_9646 and tr_M3W254_M3W254_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1LEH7_G1LEH7_AILME_9646 and tr_A0A2Y9K370_A0A2Y9K370_ENHLU_391180 are exactly identical! WARNING: Sequences tr_B3RSG6_B3RSG6_TRIAD_10228 and tr_A0A369SHN9_A0A369SHN9_9METZ_287889 are exactly identical! WARNING: Sequences tr_L0PB47_L0PB47_PNEJ8_1209962 and tr_A0A0W4ZK10_A0A0W4ZK10_PNEJ7_1408657 are exactly identical! WARNING: Sequences tr_L2FV46_L2FV46_COLFN_1213859 and tr_T0JTE7_T0JTE7_COLGC_1237896 are exactly identical! WARNING: Sequences tr_U3J7A4_U3J7A4_ANAPL_8839 and tr_A0A091EAH1_A0A091EAH1_CORBR_85066 are exactly identical! WARNING: Sequences tr_U3J7A4_U3J7A4_ANAPL_8839 and tr_A0A091JSD5_A0A091JSD5_EGRGA_188379 are exactly identical! WARNING: Sequences tr_U3J7A4_U3J7A4_ANAPL_8839 and tr_A0A091VII9_A0A091VII9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_U3J7A4_U3J7A4_ANAPL_8839 and tr_A0A087R4C5_A0A087R4C5_APTFO_9233 are exactly identical! WARNING: Sequences tr_U3J7A4_U3J7A4_ANAPL_8839 and tr_A0A093HEM6_A0A093HEM6_STRCA_441894 are exactly identical! WARNING: Sequences tr_U3J7A4_U3J7A4_ANAPL_8839 and tr_A0A091WT72_A0A091WT72_OPIHO_30419 are exactly identical! WARNING: Sequences tr_U3J7A4_U3J7A4_ANAPL_8839 and tr_A0A091GFE1_A0A091GFE1_9AVES_55661 are exactly identical! WARNING: Sequences tr_U3J7A4_U3J7A4_ANAPL_8839 and tr_A0A099ZWJ2_A0A099ZWJ2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_U3J7A4_U3J7A4_ANAPL_8839 and tr_A0A093GI41_A0A093GI41_DRYPU_118200 are exactly identical! WARNING: Sequences tr_M2SSB8_M2SSB8_COCSN_665912 and tr_R0IT41_R0IT41_SETT2_671987 are exactly identical! WARNING: Sequences tr_M2SSB8_M2SSB8_COCSN_665912 and tr_M2TIQ4_M2TIQ4_COCH5_701091 are exactly identical! WARNING: Sequences tr_M2SSB8_M2SSB8_COCSN_665912 and tr_W6Y8M6_W6Y8M6_COCCA_930089 are exactly identical! WARNING: Sequences tr_M2SSB8_M2SSB8_COCSN_665912 and tr_W6YW58_W6YW58_COCMI_930090 are exactly identical! WARNING: Sequences tr_A0A015L4Y7_A0A015L4Y7_9GLOM_1432141 and tr_A0A2I1F2S9_A0A2I1F2S9_9GLOM_588596 are exactly identical! WARNING: Sequences tr_A0A044VHT2_A0A044VHT2_ONCVO_6282 and tr_A0A182EP24_A0A182EP24_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A084Q8L4_A0A084Q8L4_STAC4_1283841 and tr_A0A084RFB3_A0A084RFB3_STACH_1283842 are exactly identical! WARNING: Sequences tr_A0A094EDN8_A0A094EDN8_9PEZI_1420912 and tr_A0A1B8GJ55_A0A1B8GJ55_9PEZI_342668 are exactly identical! WARNING: Sequences tr_A0A094EDN8_A0A094EDN8_9PEZI_1420912 and tr_A0A1B8C8K5_A0A1B8C8K5_9PEZI_1622147 are exactly identical! WARNING: Sequences tr_A0A094EDN8_A0A094EDN8_9PEZI_1420912 and tr_A0A1B8F6S6_A0A1B8F6S6_9PEZI_1622149 are exactly identical! WARNING: Sequences tr_A0A0D9REF2_A0A0D9REF2_CHLSB_60711 and tr_A0A2K6E3R4_A0A2K6E3R4_MACNE_9545 are exactly identical! WARNING: Sequences tr_W4K7W1_W4K7W1_9HOMO_747525 and tr_W4K835_W4K835_9HOMO_747525 are exactly identical! WARNING: Sequences tr_A0A0F9ZX85_A0A0F9ZX85_TRIHA_5544 and tr_A0A2T4ARK6_A0A2T4ARK6_TRIHA_983964 are exactly identical! WARNING: Sequences tr_A0A0F8XLQ7_A0A0F8XLQ7_9EURO_308745 and tr_A0A2T5LS44_A0A2T5LS44_9EURO_1392256 are exactly identical! WARNING: Sequences tr_A0A0M9WFU6_A0A0M9WFU6_9EURO_229535 and tr_A0A0G4P1G6_A0A0G4P1G6_PENCA_1429867 are exactly identical! WARNING: Sequences tr_A0A0M9WFU6_A0A0M9WFU6_9EURO_229535 and tr_A0A1V6QQY6_A0A1V6QQY6_9EURO_60172 are exactly identical! WARNING: Sequences tr_A0A0M9EZY8_A0A0M9EZY8_FUSLA_179993 and tr_A0A1B8B858_A0A1B8B858_FUSPO_36050 are exactly identical! WARNING: Sequences tr_A0A0M9EZY8_A0A0M9EZY8_FUSLA_179993 and tr_A0A366QZR4_A0A366QZR4_9HYPO_2109339 are exactly identical! WARNING: Sequences tr_A0A0A1N618_A0A0A1N618_9FUNG_58291 and tr_A0A2G4T0D2_A0A2G4T0D2_9FUNG_1340429 are exactly identical! WARNING: Sequences tr_A0A151M8T8_A0A151M8T8_ALLMI_8496 and tr_A0A1U7S241_A0A1U7S241_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151M8Y0_A0A151M8Y0_ALLMI_8496 and tr_A0A1U7RAB7_A0A1U7RAB7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0D2G7P0_A0A0D2G7P0_9EURO_1442368 and tr_A0A0D2IZU3_A0A0D2IZU3_9EURO_1442371 are exactly identical! WARNING: Sequences tr_A0A0D2G7P0_A0A0D2G7P0_9EURO_1442368 and tr_A0A0D2CBV5_A0A0D2CBV5_9EURO_569365 are exactly identical! WARNING: Sequences tr_A0A0D2G7P0_A0A0D2G7P0_9EURO_1442368 and tr_A0A178ZGS5_A0A178ZGS5_9EURO_1367422 are exactly identical! WARNING: Sequences tr_A0A091J0R2_A0A091J0R2_EGRGA_188379 and tr_A0A0A0A8U2_A0A0A0A8U2_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A091J0R2_A0A091J0R2_EGRGA_188379 and tr_A0A091ILW0_A0A091ILW0_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091VJ65_A0A091VJ65_NIPNI_128390 and tr_A0A087R4B7_A0A087R4B7_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091VJ65_A0A091VJ65_NIPNI_128390 and tr_A0A093HEM4_A0A093HEM4_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A091VJ65_A0A091VJ65_NIPNI_128390 and tr_A0A091H484_A0A091H484_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091VJ65_A0A091VJ65_NIPNI_128390 and tr_A0A091IIC6_A0A091IIC6_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A2I0MD82_A0A2I0MD82_COLLI_8932 and tr_A0A1V4JE59_A0A1V4JE59_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A1C3YIZ8_A0A1C3YIZ8_GIBZE_229533 and tr_A0A2T4GI22_A0A2T4GI22_FUSCU_5516 are exactly identical! WARNING: Sequences tr_A0A166X2H9_A0A166X2H9_9PEZI_708197 and tr_A0A167CAM0_A0A167CAM0_9PEZI_1573173 are exactly identical! WARNING: Sequences tr_A0A164TDC9_A0A164TDC9_9HOMO_1314777 and tr_A0A165ZMR5_A0A165ZMR5_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A194W9B0_A0A194W9B0_9PEZI_105487 and tr_A0A194UY80_A0A194UY80_9PEZI_694573 are exactly identical! WARNING: Sequences tr_A0A1S3T5J0_A0A1S3T5J0_SALSA_8030 and tr_A0A060X622_A0A060X622_ONCMY_8022 are exactly identical! WARNING: Sequences tr_B5X0Y3_B5X0Y3_SALSA_8030 and tr_A0A060XJB7_A0A060XJB7_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1F5LN19_A0A1F5LN19_9EURO_1835702 and tr_A0A1V6PVE7_A0A1V6PVE7_9EURO_416450 are exactly identical! WARNING: Sequences tr_A0A1L9WWP7_A0A1L9WWP7_ASPAC_690307 and tr_A0A2V5I6N9_A0A2V5I6N9_9EURO_1450541 are exactly identical! WARNING: Sequences tr_A0A1L9WWP7_A0A1L9WWP7_ASPAC_690307 and tr_A0A2V5H1C6_A0A2V5H1C6_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A1V8TZS0_A0A1V8TZS0_9PEZI_1974281 and tr_A0A1V8T474_A0A1V8T474_9PEZI_1507870 are exactly identical! WARNING: Sequences tr_A0A2H3I4Y9_A0A2H3I4Y9_9EURO_290292 and tr_A0A364LBI0_A0A364LBI0_9EURO_1196081 are exactly identical! WARNING: Sequences tr_A0A2D0QAC2_A0A2D0QAC2_ICTPU_7998 and tr_A0A2D0QB99_A0A2D0QB99_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2G5IDD0_A0A2G5IDD0_CERBT_122368 and tr_A0A2S6CDW7_A0A2S6CDW7_9PEZI_357750 are exactly identical! WARNING: Sequences tr_A0A2N5T1J6_A0A2N5T1J6_9BASI_200324 and tr_A0A2N5U8Q5_A0A2N5U8Q5_9BASI_200324 are exactly identical! WARNING: Sequences tr_A0A2S7QIH3_A0A2S7QIH3_9HELO_2070414 and tr_A0A2S7QBW3_A0A2S7QBW3_9HELO_2070412 are exactly identical! WARNING: Sequences tr_A0A2G4T721_A0A2G4T721_9FUNG_1340429 and tr_A0A367IXD2_A0A367IXD2_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A2U3VKE8_A0A2U3VKE8_ODORO_9708 and tr_A0A2U3Y596_A0A2U3Y596_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A0A317W2F6_A0A317W2F6_9EURO_1450535 and tr_A0A319DW58_A0A319DW58_9EURO_1448318 are exactly identical! WARNING: Sequences tr_A0A317W2F6_A0A317W2F6_9EURO_1450535 and tr_A0A395HET9_A0A395HET9_9EURO_1448316 are exactly identical! WARNING: Duplicate sequences found: 178 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q02750/3_mltree/Q02750.raxml.reduced.phy Alignment comprises 1 partitions and 298 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 298 / 298 Gaps: 2.86 % Invariant sites: 1.01 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q02750/3_mltree/Q02750.raxml.rba Parallelization scheme autoconfig: 6 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 298 / 23840 [00:00:00] Data distribution: max. searches per worker: 4 Starting ML tree search with 20 distinct starting trees [00:00:00 -399718.212197] Initial branch length optimization [00:00:08 -332107.769780] Model parameter optimization (eps = 10.000000) [00:01:26 -331513.484959] AUTODETECT spr round 1 (radius: 5) [00:05:52 -202059.882227] AUTODETECT spr round 2 (radius: 10) [00:10:16 -145045.006124] AUTODETECT spr round 3 (radius: 15) [00:15:04 -115816.635274] AUTODETECT spr round 4 (radius: 20) [00:20:40 -101398.364555] AUTODETECT spr round 5 (radius: 25) [00:27:16 -97475.666853] SPR radius for FAST iterations: 25 (autodetect) [00:27:16 -97475.666853] Model parameter optimization (eps = 3.000000) [00:27:45 -97447.342189] FAST spr round 1 (radius: 25) [00:32:42 -82833.493653] FAST spr round 2 (radius: 25) [00:36:18 -82104.808757] FAST spr round 3 (radius: 25) [00:39:15 -82069.421835] FAST spr round 4 (radius: 25) [00:41:51 -82067.721663] FAST spr round 5 (radius: 25) [00:44:23 -82067.721324] Model parameter optimization (eps = 1.000000) [00:44:41 -82063.514064] SLOW spr round 1 (radius: 5) [00:48:07 -82052.110672] SLOW spr round 2 (radius: 5) [00:51:21 -82052.110279] SLOW spr round 3 (radius: 10) [00:54:51 -82052.081925] SLOW spr round 4 (radius: 15) [01:00:53 -82049.118662] SLOW spr round 5 (radius: 5) [01:05:23 -82049.118403] SLOW spr round 6 (radius: 10) [01:09:30 -82048.141328] SLOW spr round 7 (radius: 5) [01:13:36 -82048.141299] SLOW spr round 8 (radius: 10) [01:17:24 -82048.141298] SLOW spr round 9 (radius: 15) [01:20:33] [worker #3] ML tree search #4, logLikelihood: -82054.971906 [01:23:05 -82048.141298] SLOW spr round 10 (radius: 20) [01:31:49 -82044.239584] SLOW spr round 11 (radius: 5) [01:36:32 -82040.583215] SLOW spr round 12 (radius: 5) [01:38:43] [worker #1] ML tree search #2, logLikelihood: -82041.482455 [01:40:28 -82040.583197] SLOW spr round 13 (radius: 10) [01:44:11 -82040.583197] SLOW spr round 14 (radius: 15) [01:45:09] [worker #4] ML tree search #5, logLikelihood: -82041.201322 [01:50:01 -82040.583196] SLOW spr round 15 (radius: 20) [01:58:11] [worker #5] ML tree search #6, logLikelihood: -82046.394567 [01:58:48 -82040.583195] SLOW spr round 16 (radius: 25) [02:04:29] [worker #2] ML tree search #3, logLikelihood: -82038.685735 [02:09:38 -82040.583194] Model parameter optimization (eps = 0.100000) [02:09:53] [worker #0] ML tree search #1, logLikelihood: -82040.381981 [02:09:53 -395098.328128] Initial branch length optimization [02:10:02 -326398.690533] Model parameter optimization (eps = 10.000000) [02:11:07 -325814.692860] AUTODETECT spr round 1 (radius: 5) [02:15:24 -208041.380298] AUTODETECT spr round 2 (radius: 10) [02:19:42 -157643.436596] AUTODETECT spr round 3 (radius: 15) [02:24:25 -129781.954243] AUTODETECT spr round 4 (radius: 20) [02:30:12 -104117.880805] AUTODETECT spr round 5 (radius: 25) [02:36:05 -100566.846459] SPR radius for FAST iterations: 25 (autodetect) [02:36:05 -100566.846459] Model parameter optimization (eps = 3.000000) [02:36:43 -100519.103362] FAST spr round 1 (radius: 25) [02:41:17 -83100.294867] FAST spr round 2 (radius: 25) [02:44:34 -82168.878384] FAST spr round 3 (radius: 25) [02:47:31 -82114.050849] FAST spr round 4 (radius: 25) [02:50:13 -82091.030585] FAST spr round 5 (radius: 25) [02:52:43 -82086.983229] FAST spr round 6 (radius: 25) [02:55:07 -82086.983171] Model parameter optimization (eps = 1.000000) [02:55:31 -82079.582213] SLOW spr round 1 (radius: 5) [02:58:53 -82070.741036] SLOW spr round 2 (radius: 5) [03:02:14 -82062.390075] SLOW spr round 3 (radius: 5) [03:02:25] [worker #1] ML tree search #8, logLikelihood: -82044.198711 [03:05:33 -82061.311572] SLOW spr round 4 (radius: 5) [03:08:44 -82061.310580] SLOW spr round 5 (radius: 10) [03:12:10 -82061.310549] SLOW spr round 6 (radius: 15) [03:12:40] [worker #3] ML tree search #10, logLikelihood: -82044.460331 [03:17:57 -82055.369619] SLOW spr round 7 (radius: 5) [03:22:26 -82055.369076] SLOW spr round 8 (radius: 10) [03:26:30 -82054.388022] SLOW spr round 9 (radius: 5) [03:28:52] [worker #4] ML tree search #11, logLikelihood: -82038.923305 [03:30:37 -82054.387993] SLOW spr round 10 (radius: 10) [03:34:25 -82054.387992] SLOW spr round 11 (radius: 15) [03:39:52 -82054.387992] SLOW spr round 12 (radius: 20) [03:47:28 -82054.387992] SLOW spr round 13 (radius: 25) [03:55:34] [worker #2] ML tree search #9, logLikelihood: -82025.496368 [03:56:41 -82054.387992] Model parameter optimization (eps = 0.100000) [03:56:50] [worker #5] ML tree search #12, logLikelihood: -82046.620727 [03:56:57] [worker #0] ML tree search #7, logLikelihood: -82054.165906 [03:56:57 -403346.347152] Initial branch length optimization [03:57:03 -334091.117951] Model parameter optimization (eps = 10.000000) [03:58:00 -333503.520967] AUTODETECT spr round 1 (radius: 5) [04:02:27 -202209.010638] AUTODETECT spr round 2 (radius: 10) [04:06:54 -144681.227558] AUTODETECT spr round 3 (radius: 15) [04:11:59 -110618.707037] AUTODETECT spr round 4 (radius: 20) [04:17:09 -98988.989044] AUTODETECT spr round 5 (radius: 25) [04:22:55 -96808.001614] SPR radius for FAST iterations: 25 (autodetect) [04:22:55 -96808.001614] Model parameter optimization (eps = 3.000000) [04:23:24 -96780.445086] FAST spr round 1 (radius: 25) [04:23:29] [worker #1] ML tree search #14, logLikelihood: -82047.462284 [04:27:32 -82672.684840] FAST spr round 2 (radius: 25) [04:29:09] [worker #3] ML tree search #16, logLikelihood: -82039.850939 [04:30:42 -82121.948775] FAST spr round 3 (radius: 25) [04:33:34 -82095.526134] FAST spr round 4 (radius: 25) [04:36:09 -82095.451274] Model parameter optimization (eps = 1.000000) [04:36:28 -82091.606305] SLOW spr round 1 (radius: 5) [04:39:54 -82077.072559] SLOW spr round 2 (radius: 5) [04:43:18 -82073.544092] SLOW spr round 3 (radius: 5) [04:46:30 -82073.127947] SLOW spr round 4 (radius: 5) [04:49:39 -82073.127945] SLOW spr round 5 (radius: 10) [04:53:04 -82073.100628] SLOW spr round 6 (radius: 15) [04:58:58 -82070.046859] SLOW spr round 7 (radius: 5) [05:03:28 -82070.045708] SLOW spr round 8 (radius: 10) [05:07:31 -82070.045495] SLOW spr round 9 (radius: 15) [05:12:55 -82070.045494] SLOW spr round 10 (radius: 20) [05:19:42] [worker #5] ML tree search #18, logLikelihood: -82054.354314 [05:20:27 -82070.045492] SLOW spr round 11 (radius: 25) [05:30:02 -82065.041097] SLOW spr round 12 (radius: 5) [05:31:57] [worker #4] ML tree search #17, logLikelihood: -82043.938758 [05:34:38 -82065.040611] SLOW spr round 13 (radius: 10) [05:38:52 -82065.040611] SLOW spr round 14 (radius: 15) [05:44:13 -82065.040421] SLOW spr round 15 (radius: 20) [05:46:28] [worker #1] ML tree search #20, logLikelihood: -82037.217430 [05:51:43 -82065.040420] SLOW spr round 16 (radius: 25) [06:01:08 -82065.040419] Model parameter optimization (eps = 0.100000) [06:01:16] [worker #0] ML tree search #13, logLikelihood: -82064.991977 [06:01:16 -397446.753650] Initial branch length optimization [06:01:24 -329642.059737] Model parameter optimization (eps = 10.000000) [06:02:21 -329023.307174] AUTODETECT spr round 1 (radius: 5) [06:06:44 -205315.950809] AUTODETECT spr round 2 (radius: 10) [06:10:59 -152198.786265] AUTODETECT spr round 3 (radius: 15) [06:15:38 -124223.406088] AUTODETECT spr round 4 (radius: 20) [06:21:11 -104535.819979] AUTODETECT spr round 5 (radius: 25) [06:27:02 -98805.481507] SPR radius for FAST iterations: 25 (autodetect) [06:27:02 -98805.481507] Model parameter optimization (eps = 3.000000) [06:27:36 -98734.701526] FAST spr round 1 (radius: 25) [06:32:10 -83018.742167] FAST spr round 2 (radius: 25) [06:35:25 -82176.339812] FAST spr round 3 (radius: 25) [06:38:20 -82071.371157] FAST spr round 4 (radius: 25) [06:40:53 -82064.353691] FAST spr round 5 (radius: 25) [06:43:15 -82063.174376] FAST spr round 6 (radius: 25) [06:45:34 -82063.174373] Model parameter optimization (eps = 1.000000) [06:45:59 -82056.572071] SLOW spr round 1 (radius: 5) [06:46:38] [worker #2] ML tree search #15, logLikelihood: -82045.637673 [06:49:14 -82042.310487] SLOW spr round 2 (radius: 5) [06:52:31 -82041.536379] SLOW spr round 3 (radius: 5) [06:55:46 -82041.092215] SLOW spr round 4 (radius: 5) [06:58:56 -82041.090571] SLOW spr round 5 (radius: 10) [07:02:16 -82041.089880] SLOW spr round 6 (radius: 15) [07:07:42 -82040.758498] SLOW spr round 7 (radius: 5) [07:12:09 -82040.666420] SLOW spr round 8 (radius: 10) [07:16:08 -82040.660571] SLOW spr round 9 (radius: 15) [07:21:15 -82040.660568] SLOW spr round 10 (radius: 20) [07:28:34 -82040.660566] SLOW spr round 11 (radius: 25) [07:37:45 -82040.660564] Model parameter optimization (eps = 0.100000) [07:37:54] [worker #0] ML tree search #19, logLikelihood: -82040.567378 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.219661,0.233591) (0.294170,0.351558) (0.254374,1.015262) (0.231795,2.532478) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -82025.496368 AIC score: 168060.992736 / AICc score: 8212120.992736 / BIC score: 175473.665177 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=298). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 1 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q02750/3_mltree/Q02750.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q02750/3_mltree/Q02750.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q02750/3_mltree/Q02750.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q02750/3_mltree/Q02750.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q02750/3_mltree/Q02750.raxml.log Analysis started: 03-Jul-2021 01:06:06 / finished: 03-Jul-2021 08:44:00 Elapsed time: 27474.729 seconds Consumed energy: 1561.736 Wh (= 8 km in an electric car, or 39 km with an e-scooter!)