RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab.
Developed by: Alexey M. Kozlov and Alexandros Stamatakis.
Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth.
Latest version: https://github.com/amkozlov/raxml-ng
Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml

System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM

RAxML-NG was called at 18-Jun-2021 08:42:02 as follows:

raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q02161/2_msa/Q02161_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q02161/3_mltree/Q02161 --seed 2 --threads 5 --tree rand{20} pars{20}

Analysis options:
  run mode: ML tree search
  start tree(s): random (20)
  random seed: 2
  tip-inner: OFF
  pattern compression: ON
  per-rate scalers: OFF
  site repeats: ON
  fast spr radius: AUTO
  spr subtree cutoff: 1.000000
  branch lengths: proportional (ML estimate, algorithm: NR-FAST)
  SIMD kernels: AVX2
  parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF

[00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q02161/2_msa/Q02161_trimmed_msa.fasta
[00:00:00] Loaded alignment with 457 taxa and 303 sites

WARNING: Sequences tr_A0A1D5PYZ5_A0A1D5PYZ5_CHICK_9031 and tr_R4GL87_R4GL87_CHICK_9031 are exactly identical!
WARNING: Sequences tr_E9Q2A2_E9Q2A2_MOUSE_10090 and sp_Q8BUX5_RHBG_MOUSE_10090 are exactly identical!
WARNING: Sequences tr_A0A0A0MQQ5_A0A0A0MQQ5_RABIT_9986 and sp_Q95JD4_RHBG_RABIT_9986 are exactly identical!
WARNING: Sequences tr_H2QT55_H2QT55_PANTR_9598 and tr_A0A2R9AX38_A0A2R9AX38_PANPA_9597 are exactly identical!
WARNING: Sequences sp_Q95M74_RHBG_PANTR_9598 and tr_A0A2R9AUJ4_A0A2R9AUJ4_PANPA_9597 are exactly identical!
WARNING: Sequences tr_H2SKM8_H2SKM8_TAKRU_31033 and sp_Q18PF6_RHBG_TAKRU_31033 are exactly identical!
WARNING: Sequences tr_H3C5T0_H3C5T0_TETNG_99883 and sp_Q3BBX7_RHCG_TETNG_99883 are exactly identical!
WARNING: Sequences tr_H3D622_H3D622_TETNG_99883 and sp_Q3BBX8_RHBG_TETNG_99883 are exactly identical!
WARNING: Sequences tr_F1SK21_F1SK21_PIG_9823 and sp_Q19KI0_RHCG_PIG_9823 are exactly identical!
WARNING: Sequences tr_G7P9E9_G7P9E9_MACFA_9541 and tr_A0A096NN77_A0A096NN77_PAPAN_9555 are exactly identical!
WARNING: Sequences tr_G7P9E9_G7P9E9_MACFA_9541 and tr_A0A0D9RX60_A0A0D9RX60_CHLSB_60711 are exactly identical!
WARNING: Sequences tr_G7P9E9_G7P9E9_MACFA_9541 and tr_A0A2K5M8E2_A0A2K5M8E2_CERAT_9531 are exactly identical!
WARNING: Sequences tr_G7P9E9_G7P9E9_MACFA_9541 and tr_A0A2K5YT09_A0A2K5YT09_MANLE_9568 are exactly identical!
WARNING: Sequences tr_W2PIY6_W2PIY6_PHYPN_761204 and tr_A0A0W8CK14_A0A0W8CK14_PHYNI_4790 are exactly identical!
WARNING: Sequences tr_W2PIY6_W2PIY6_PHYPN_761204 and tr_W2K3S0_W2K3S0_PHYPR_4792 are exactly identical!
WARNING: Sequences tr_A0A2D0QLB4_A0A2D0QLB4_ICTPU_7998 and tr_A0A2D0QLL7_A0A2D0QLL7_ICTPU_7998 are exactly identical!
WARNING: Sequences tr_A0A2D0RTQ5_A0A2D0RTQ5_ICTPU_7998 and tr_A0A2D0RUM6_A0A2D0RUM6_ICTPU_7998 are exactly identical!
WARNING: Duplicate sequences found: 17

NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) 
NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q02161/3_mltree/Q02161.raxml.reduced.phy

Alignment comprises 1 partitions and 303 patterns

Partition 0: noname
Model: LG4X+R4
Alignment sites / patterns: 303 / 303
Gaps: 5.26 %
Invariant sites: 0.00 %


NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q02161/3_mltree/Q02161.raxml.rba

Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s)

Parallel reduction/worker buffer size: 1 KB  / 0 KB

[00:00:00] Generating 20 random starting tree(s) with 457 taxa
[00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 303 / 24240
[00:00:00] Data distribution: max. searches per worker: 4

Starting ML tree search with 20 distinct starting trees

[00:00:00 -202579.737281] Initial branch length optimization
[00:00:02 -169920.561998] Model parameter optimization (eps = 10.000000)
[00:00:29 -168655.719017] AUTODETECT spr round 1 (radius: 5)
[00:01:25 -121896.606732] AUTODETECT spr round 2 (radius: 10)
[00:02:33 -93355.660258] AUTODETECT spr round 3 (radius: 15)
[00:04:11 -82315.311032] AUTODETECT spr round 4 (radius: 20)
[00:06:20 -78709.251944] AUTODETECT spr round 5 (radius: 25)
[00:08:35 -78567.592319] SPR radius for FAST iterations: 25 (autodetect)
[00:08:36 -78567.592319] Model parameter optimization (eps = 3.000000)
[00:08:53 -78501.713690] FAST spr round 1 (radius: 25)
[00:10:05 -70901.016062] FAST spr round 2 (radius: 25)
[00:11:04 -70417.506746] FAST spr round 3 (radius: 25)
[00:11:58 -70368.403688] FAST spr round 4 (radius: 25)
[00:12:40 -70367.394988] FAST spr round 5 (radius: 25)
[00:13:21 -70367.394985] Model parameter optimization (eps = 1.000000)
[00:13:34 -70357.815484] SLOW spr round 1 (radius: 5)
[00:14:52 -70343.647697] SLOW spr round 2 (radius: 5)
[00:16:03 -70341.510526] SLOW spr round 3 (radius: 5)
[00:17:10 -70341.510373] SLOW spr round 4 (radius: 10)
[00:18:20 -70340.540165] SLOW spr round 5 (radius: 5)
[00:19:57 -70332.288828] SLOW spr round 6 (radius: 5)
[00:21:16 -70331.442181] SLOW spr round 7 (radius: 5)
[00:22:27 -70331.442138] SLOW spr round 8 (radius: 10)
[00:23:38 -70331.442137] SLOW spr round 9 (radius: 15)
[00:26:08 -70331.442137] SLOW spr round 10 (radius: 20)
[00:29:41] [worker #4] ML tree search #5, logLikelihood: -70320.614694
[00:29:48 -70331.442137] SLOW spr round 11 (radius: 25)
[00:30:14] [worker #3] ML tree search #4, logLikelihood: -70323.072564
[00:33:34 -70331.442137] Model parameter optimization (eps = 0.100000)

[00:33:46] [worker #0] ML tree search #1, logLikelihood: -70331.279312

[00:33:46 -202075.521251] Initial branch length optimization
[00:33:50 -169383.388439] Model parameter optimization (eps = 10.000000)
[00:34:26 -168293.290611] AUTODETECT spr round 1 (radius: 5)
[00:35:08] [worker #1] ML tree search #2, logLikelihood: -70320.317650
[00:35:22 -120861.878209] AUTODETECT spr round 2 (radius: 10)
[00:36:32 -89164.816796] AUTODETECT spr round 3 (radius: 15)
[00:38:00 -80428.996735] AUTODETECT spr round 4 (radius: 20)
[00:39:20] [worker #2] ML tree search #3, logLikelihood: -70330.170973
[00:40:12 -79055.168309] AUTODETECT spr round 5 (radius: 25)
[00:42:57 -78936.493419] SPR radius for FAST iterations: 25 (autodetect)
[00:42:57 -78936.493419] Model parameter optimization (eps = 3.000000)
[00:43:15 -78877.556193] FAST spr round 1 (radius: 25)
[00:44:32 -70874.243583] FAST spr round 2 (radius: 25)
[00:45:30 -70381.045231] FAST spr round 3 (radius: 25)
[00:46:25 -70339.432671] FAST spr round 4 (radius: 25)
[00:47:08 -70339.229642] FAST spr round 5 (radius: 25)
[00:47:49 -70339.228244] Model parameter optimization (eps = 1.000000)
[00:48:02 -70331.962446] SLOW spr round 1 (radius: 5)
[00:49:20 -70316.379853] SLOW spr round 2 (radius: 5)
[00:50:29 -70315.716738] SLOW spr round 3 (radius: 5)
[00:51:36 -70315.716687] SLOW spr round 4 (radius: 10)
[00:52:46 -70315.716686] SLOW spr round 5 (radius: 15)
[00:55:10 -70315.716686] SLOW spr round 6 (radius: 20)
[00:58:42 -70315.716686] SLOW spr round 7 (radius: 25)
[01:02:27 -70315.716686] Model parameter optimization (eps = 0.100000)

[01:02:33] [worker #0] ML tree search #6, logLikelihood: -70315.697568

[01:02:33 -205839.115470] Initial branch length optimization
[01:02:34] [worker #3] ML tree search #9, logLikelihood: -70321.863455
[01:02:35 -171276.467084] Model parameter optimization (eps = 10.000000)
[01:03:06 -170019.471871] AUTODETECT spr round 1 (radius: 5)
[01:03:41] [worker #4] ML tree search #10, logLikelihood: -70319.440551
[01:04:04 -121035.014150] AUTODETECT spr round 2 (radius: 10)
[01:05:12 -87889.036035] AUTODETECT spr round 3 (radius: 15)
[01:06:52 -77468.795643] AUTODETECT spr round 4 (radius: 20)
[01:09:01 -77146.225411] AUTODETECT spr round 5 (radius: 25)
[01:09:08] [worker #2] ML tree search #8, logLikelihood: -70332.319074
[01:10:34] [worker #1] ML tree search #7, logLikelihood: -70324.602748
[01:11:21 -77146.209380] SPR radius for FAST iterations: 20 (autodetect)
[01:11:21 -77146.209380] Model parameter optimization (eps = 3.000000)
[01:11:37 -77067.787600] FAST spr round 1 (radius: 20)
[01:12:48 -70606.626684] FAST spr round 2 (radius: 20)
[01:13:46 -70375.509786] FAST spr round 3 (radius: 20)
[01:14:33 -70364.318359] FAST spr round 4 (radius: 20)
[01:15:20 -70349.777415] FAST spr round 5 (radius: 20)
[01:16:03 -70347.517636] FAST spr round 6 (radius: 20)
[01:16:45 -70347.517592] Model parameter optimization (eps = 1.000000)
[01:16:57 -70341.727688] SLOW spr round 1 (radius: 5)
[01:18:14 -70323.716398] SLOW spr round 2 (radius: 5)
[01:19:27 -70322.730089] SLOW spr round 3 (radius: 5)
[01:20:36 -70321.945669] SLOW spr round 4 (radius: 5)
[01:21:43 -70321.100901] SLOW spr round 5 (radius: 5)
[01:22:50 -70321.100131] SLOW spr round 6 (radius: 10)
[01:24:00 -70320.327961] SLOW spr round 7 (radius: 5)
[01:25:34 -70320.326498] SLOW spr round 8 (radius: 10)
[01:26:59 -70320.325943] SLOW spr round 9 (radius: 15)
[01:29:17 -70320.325663] SLOW spr round 10 (radius: 20)
[01:30:37] [worker #3] ML tree search #14, logLikelihood: -70322.293330
[01:32:56 -70320.325513] SLOW spr round 11 (radius: 25)
[01:36:38 -70320.325433] Model parameter optimization (eps = 0.100000)

[01:36:48] [worker #0] ML tree search #11, logLikelihood: -70319.785512

[01:36:48 -201676.450893] Initial branch length optimization
[01:36:50 -167142.537659] Model parameter optimization (eps = 10.000000)
[01:37:19 -165990.276422] AUTODETECT spr round 1 (radius: 5)
[01:38:15 -122136.293398] AUTODETECT spr round 2 (radius: 10)
[01:38:42] [worker #4] ML tree search #15, logLikelihood: -70328.447740
[01:39:24 -92225.608950] AUTODETECT spr round 3 (radius: 15)
[01:40:50 -81259.397774] AUTODETECT spr round 4 (radius: 20)
[01:42:41 -78345.821539] AUTODETECT spr round 5 (radius: 25)
[01:44:15] [worker #2] ML tree search #13, logLikelihood: -70320.441175
[01:45:12 -78053.408126] SPR radius for FAST iterations: 25 (autodetect)
[01:45:12 -78053.408126] Model parameter optimization (eps = 3.000000)
[01:45:30 -77978.657019] FAST spr round 1 (radius: 25)
[01:46:46 -70580.760491] FAST spr round 2 (radius: 25)
[01:47:45 -70388.082955] FAST spr round 3 (radius: 25)
[01:48:30] [worker #1] ML tree search #12, logLikelihood: -70320.714913
[01:48:36 -70372.368288] FAST spr round 4 (radius: 25)
[01:49:22 -70365.514259] FAST spr round 5 (radius: 25)
[01:50:03 -70365.514157] Model parameter optimization (eps = 1.000000)
[01:50:17 -70352.246116] SLOW spr round 1 (radius: 5)
[01:51:36 -70335.549657] SLOW spr round 2 (radius: 5)
[01:52:45 -70335.062846] SLOW spr round 3 (radius: 5)
[01:53:51 -70335.062238] SLOW spr round 4 (radius: 10)
[01:55:01 -70334.929435] SLOW spr round 5 (radius: 5)
[01:56:38 -70331.049379] SLOW spr round 6 (radius: 5)
[01:57:57 -70330.453445] SLOW spr round 7 (radius: 5)
[01:59:08 -70330.452975] SLOW spr round 8 (radius: 10)
[01:59:22] [worker #3] ML tree search #19, logLikelihood: -70319.319239
[02:00:20 -70329.872741] SLOW spr round 9 (radius: 5)
[02:01:54 -70329.719125] SLOW spr round 10 (radius: 5)
[02:03:12 -70329.718939] SLOW spr round 11 (radius: 10)
[02:04:26 -70329.718823] SLOW spr round 12 (radius: 15)
[02:06:58 -70329.718749] SLOW spr round 13 (radius: 20)
[02:07:55] [worker #4] ML tree search #20, logLikelihood: -70327.265440
[02:10:56 -70329.718701] SLOW spr round 14 (radius: 25)
[02:14:41 -70329.718671] Model parameter optimization (eps = 0.100000)

[02:14:49] [worker #0] ML tree search #16, logLikelihood: -70329.293926

[02:20:45] [worker #2] ML tree search #18, logLikelihood: -70322.218283
[02:27:05] [worker #1] ML tree search #17, logLikelihood: -70310.978028

Optimized model parameters:

   Partition 0: noname
   Rate heterogeneity: FREE (4 cats, mean),  weights&rates: (0.279758,0.688677) (0.355937,0.702802) (0.316698,1.346983) (0.047608,2.743213) 
   Base frequencies (model): 
M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 
M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 
M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 
M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 
   Substitution rates (model): 
M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 
M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 
M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 
M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 


Final LogLikelihood: -70310.978028

AIC score: 142455.956057 / AICc score: 1826067.956057 / BIC score: 145861.449040
Free parameters (model + branch lengths): 917

WARNING: Number of free parameters (K=917) is larger than alignment size (n=303).
         This might lead to overfitting and compromise tree inference results!


WARNING: Best ML tree contains 21 near-zero branches!

Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q02161/3_mltree/Q02161.raxml.bestTreeCollapsed
Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q02161/3_mltree/Q02161.raxml.bestTree
All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q02161/3_mltree/Q02161.raxml.mlTrees
Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q02161/3_mltree/Q02161.raxml.bestModel

Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_040621/phylogeny-snakemake/results/Q02161/3_mltree/Q02161.raxml.log

Analysis started: 18-Jun-2021 08:42:02 / finished: 18-Jun-2021 11:09:07

Elapsed time: 8825.184 seconds