RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 07-Jul-2021 10:12:58 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q01543/2_msa/Q01543_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q01543/3_mltree/Q01543 --seed 2 --threads 5 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (5 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q01543/2_msa/Q01543_trimmed_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 232 sites WARNING: Sequences tr_E2AUV3_E2AUV3_CAMFO_104421 and tr_F4WQF6_F4WQF6_ACREC_103372 are exactly identical! WARNING: Sequences tr_E2AUV3_E2AUV3_CAMFO_104421 and tr_E2BRF8_E2BRF8_HARSA_610380 are exactly identical! WARNING: Sequences tr_E2AUV3_E2AUV3_CAMFO_104421 and tr_A0A026WC02_A0A026WC02_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E2AUV3_E2AUV3_CAMFO_104421 and tr_A0A2A3EM72_A0A2A3EM72_APICC_94128 are exactly identical! WARNING: Sequences tr_F1P3R9_F1P3R9_CHICK_9031 and sp_P15062_ETS1B_CHICK_9031 are exactly identical! WARNING: Sequences tr_F1P3R9_F1P3R9_CHICK_9031 and tr_U3I715_U3I715_ANAPL_8839 are exactly identical! WARNING: Sequences tr_F1P3R9_F1P3R9_CHICK_9031 and tr_A0A0Q3S7C6_A0A0Q3S7C6_AMAAE_12930 are exactly identical! WARNING: Sequences tr_F1P3R9_F1P3R9_CHICK_9031 and tr_A0A087QPZ4_A0A087QPZ4_APTFO_9233 are exactly identical! WARNING: Sequences sp_Q90837_ERG_CHICK_9031 and tr_G1NNZ0_G1NNZ0_MELGA_9103 are exactly identical! WARNING: Sequences sp_Q8QZW2_FEV_MOUSE_10090 and sp_O70132_FEV_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XPJ6_M3XPJ6_MUSPF_9669 and tr_G1SRH8_G1SRH8_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3XPJ6_M3XPJ6_MUSPF_9669 and tr_E2R3L5_E2R3L5_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XPJ6_M3XPJ6_MUSPF_9669 and tr_G5BQQ3_G5BQQ3_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3XPJ6_M3XPJ6_MUSPF_9669 and tr_A0A286ZW39_A0A286ZW39_PIG_9823 are exactly identical! WARNING: Sequences tr_M3XPJ6_M3XPJ6_MUSPF_9669 and tr_G1MFL6_G1MFL6_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XPJ6_M3XPJ6_MUSPF_9669 and tr_M3WWT5_M3WWT5_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XPJ6_M3XPJ6_MUSPF_9669 and tr_A0A091CU92_A0A091CU92_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3XPJ6_M3XPJ6_MUSPF_9669 and tr_A0A2U3V3A6_A0A2U3V3A6_TURTR_9739 are exactly identical! WARNING: Sequences tr_M3XPJ6_M3XPJ6_MUSPF_9669 and tr_A0A2U3WVB2_A0A2U3WVB2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3XPJ6_M3XPJ6_MUSPF_9669 and tr_A0A2Y9JX83_A0A2Y9JX83_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XPJ6_M3XPJ6_MUSPF_9669 and tr_A0A2Y9N5V2_A0A2Y9N5V2_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3XPJ6_M3XPJ6_MUSPF_9669 and tr_A0A2Y9F9G5_A0A2Y9F9G5_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XPJ6_M3XPJ6_MUSPF_9669 and tr_A0A384CZR6_A0A384CZR6_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3XPJ6_M3XPJ6_MUSPF_9669 and tr_A0A383YN01_A0A383YN01_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3YAS2_M3YAS2_MUSPF_9669 and tr_A0A2Y9KE41_A0A2Y9KE41_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A2I2ZDB4_A0A2I2ZDB4_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_H2P354_H2P354_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A2I3SPS3_A0A2I3SPS3_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and sp_P11308_ERG_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A1D5Q946_A0A1D5Q946_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_G7P101_G7P101_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A2I3MBH1_A0A2I3MBH1_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A0D9R7Y1_A0A0D9R7Y1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A2K5P7D8_A0A2K5P7D8_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A2K6B8P2_A0A2K6B8P2_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A2K5YV43_A0A2K5YV43_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I3G7C8_A0A2I3G7C8_NOMLE_61853 and tr_A0A2R9AHQ3_A0A2R9AHQ3_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A2I3H1Y4_A0A2I3H1Y4_NOMLE_61853 and tr_A0A2I2ZEQ5_A0A2I2ZEQ5_GORGO_9595 are exactly identical! WARNING: Sequences tr_A0A2I3H1Y4_A0A2I3H1Y4_NOMLE_61853 and tr_K7BJ65_K7BJ65_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I3H1Y4_A0A2I3H1Y4_NOMLE_61853 and sp_Q01543_FLI1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I3H1Y4_A0A2I3H1Y4_NOMLE_61853 and tr_A0A2R9C1G7_A0A2R9C1G7_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QQ27_G1QQ27_NOMLE_61853 and tr_G3RDF3_G3RDF3_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QQ27_G1QQ27_NOMLE_61853 and tr_H2R0L6_H2R0L6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QQ27_G1QQ27_NOMLE_61853 and sp_Q06546_GABPA_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QQ27_G1QQ27_NOMLE_61853 and tr_F7E124_F7E124_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QQ27_G1QQ27_NOMLE_61853 and tr_U3CNG0_U3CNG0_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QQ27_G1QQ27_NOMLE_61853 and tr_G7P1M5_G7P1M5_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QQ27_G1QQ27_NOMLE_61853 and tr_A0A096NDP2_A0A096NDP2_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QQ27_G1QQ27_NOMLE_61853 and tr_A0A0D9R9H5_A0A0D9R9H5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1QQ27_G1QQ27_NOMLE_61853 and tr_A0A2K6DHI7_A0A2K6DHI7_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QQ27_G1QQ27_NOMLE_61853 and tr_A0A2R9B7F0_A0A2R9B7F0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1QY25_G1QY25_NOMLE_61853 and tr_G3RHG5_G3RHG5_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1QY25_G1QY25_NOMLE_61853 and tr_A0A2J8M7W2_A0A2J8M7W2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1QY25_G1QY25_NOMLE_61853 and sp_P15036_ETS2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1QY25_G1QY25_NOMLE_61853 and tr_G7MMS3_G7MMS3_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1QY25_G1QY25_NOMLE_61853 and tr_F7IST1_F7IST1_CALJA_9483 are exactly identical! WARNING: Sequences tr_G1QY25_G1QY25_NOMLE_61853 and tr_G7P100_G7P100_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1QY25_G1QY25_NOMLE_61853 and tr_A0A096NJ28_A0A096NJ28_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1QY25_G1QY25_NOMLE_61853 and tr_A0A2K5LY71_A0A2K5LY71_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1QY25_G1QY25_NOMLE_61853 and tr_A0A2K6BCZ5_A0A2K6BCZ5_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1QY25_G1QY25_NOMLE_61853 and tr_A0A2K5XQL0_A0A2K5XQL0_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1QY25_G1QY25_NOMLE_61853 and tr_A0A2R9A0Z0_A0A2R9A0Z0_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1R7C6_G1R7C6_NOMLE_61853 and tr_A0A1D5QXL5_A0A1D5QXL5_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1R7C6_G1R7C6_NOMLE_61853 and tr_G7PPN8_G7PPN8_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1PHK7_G1PHK7_MYOLU_59463 and tr_F7B0D2_F7B0D2_HORSE_9796 are exactly identical! WARNING: Sequences tr_G3QK39_G3QK39_GORGO_9595 and tr_A0A2I3TF56_A0A2I3TF56_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QK39_G3QK39_GORGO_9595 and tr_F7BNT6_F7BNT6_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3QK39_G3QK39_GORGO_9595 and tr_A0A2I3LSZ6_A0A2I3LSZ6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QK39_G3QK39_GORGO_9595 and tr_A0A2K5MFV0_A0A2K5MFV0_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QK39_G3QK39_GORGO_9595 and tr_A0A2K6AWL0_A0A2K6AWL0_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QK39_G3QK39_GORGO_9595 and tr_A0A2K5ZMI5_A0A2K5ZMI5_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3QK39_G3QK39_GORGO_9595 and tr_A0A2R8ZVE2_A0A2R8ZVE2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3R5E2_G3R5E2_GORGO_9595 and tr_A0A2I3RTZ5_A0A2I3RTZ5_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3R5E2_G3R5E2_GORGO_9595 and sp_Q99581_FEV_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2NFU7_H2NFU7_PONAB_9601 and tr_A0A287D693_A0A287D693_ICTTR_43179 are exactly identical! WARNING: Sequences tr_H2NFU7_H2NFU7_PONAB_9601 and sp_P14921_ETS1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2NFU7_H2NFU7_PONAB_9601 and tr_A0A0D9S4K5_A0A0D9S4K5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1NNZ1_G1NNZ1_MELGA_9103 and tr_A0A226NMA4_A0A226NMA4_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q29N54_Q29N54_DROPS_46245 and tr_B4G887_B4G887_DROPE_7234 are exactly identical! WARNING: Sequences tr_F1PRM7_F1PRM7_CANLF_9615 and tr_G1L7C9_G1L7C9_AILME_9646 are exactly identical! WARNING: Sequences tr_J9P8F5_J9P8F5_CANLF_9615 and tr_A0A337RUF7_A0A337RUF7_FELCA_9685 are exactly identical! WARNING: Sequences tr_F7BWC3_F7BWC3_HORSE_9796 and tr_A5PJG9_A5PJG9_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F7BWC3_F7BWC3_HORSE_9796 and tr_A0A2U3YA81_A0A2U3YA81_LEPWE_9713 are exactly identical! WARNING: Sequences tr_F7BWC3_F7BWC3_HORSE_9796 and tr_A0A2Y9FV48_A0A2Y9FV48_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3ZGD3_M3ZGD3_XIPMA_8083 and tr_A0A087XAI4_A0A087XAI4_POEFO_48698 are exactly identical! WARNING: Sequences tr_M3ZHW0_M3ZHW0_XIPMA_8083 and tr_A0A087XFG0_A0A087XFG0_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A087ZSS5_A0A087ZSS5_APIME_7460 and tr_A0A2A3EEP9_A0A2A3EEP9_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158NKQ5_A0A158NKQ5_ATTCE_12957 and tr_A0A195BLT8_A0A195BLT8_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NNI7_A0A158NNI7_ATTCE_12957 and tr_A0A195F6L5_A0A195F6L5_9HYME_34720 are exactly identical! WARNING: Sequences tr_H0WJ25_H0WJ25_OTOGA_30611 and tr_A0A1U7TZS4_A0A1U7TZS4_TARSY_1868482 are exactly identical! WARNING: Sequences tr_H9Z2K4_H9Z2K4_MACMU_9544 and tr_F7A492_F7A492_CALJA_9483 are exactly identical! WARNING: Sequences tr_H9Z2K4_H9Z2K4_MACMU_9544 and tr_A0A2I3N8Z5_A0A2I3N8Z5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_H9Z2K4_H9Z2K4_MACMU_9544 and tr_A0A0D9S4K8_A0A0D9S4K8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_H9Z2K4_H9Z2K4_MACMU_9544 and tr_A0A2K5NXK6_A0A2K5NXK6_CERAT_9531 are exactly identical! WARNING: Sequences tr_H9Z2K4_H9Z2K4_MACMU_9544 and tr_A0A2K6BK81_A0A2K6BK81_MACNE_9545 are exactly identical! WARNING: Sequences tr_H9Z2K4_H9Z2K4_MACMU_9544 and tr_A0A2K6A8C4_A0A2K6A8C4_MANLE_9568 are exactly identical! WARNING: Sequences tr_H3CRZ2_H3CRZ2_TETNG_99883 and tr_G3VAV7_G3VAV7_SARHA_9305 are exactly identical! WARNING: Sequences tr_H3CRZ2_H3CRZ2_TETNG_99883 and tr_G7PXQ1_G7PXQ1_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3T842_G3T842_LOXAF_9785 and tr_Q0VC98_Q0VC98_BOVIN_9913 are exactly identical! WARNING: Sequences tr_G3T842_G3T842_LOXAF_9785 and tr_A0A1S3GCR0_A0A1S3GCR0_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G3T842_G3T842_LOXAF_9785 and tr_A0A2Y9QGE7_A0A2Y9QGE7_TRIMA_127582 are exactly identical! WARNING: Sequences tr_F4X3G4_F4X3G4_ACREC_103372 and tr_A0A195FCV4_A0A195FCV4_9HYME_34720 are exactly identical! WARNING: Sequences tr_G1MDY2_G1MDY2_AILME_9646 and tr_A0A384D052_A0A384D052_URSMA_29073 are exactly identical! WARNING: Sequences tr_F1MGF9_F1MGF9_BOVIN_9913 and sp_Q29RS8_FLI1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_F1N1U5_F1N1U5_BOVIN_9913 and tr_A0A2U3W3X5_A0A2U3W3X5_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A2I2U2P4_A0A2I2U2P4_FELCA_9685 and tr_A0A2U3WS37_A0A2U3WS37_ODORO_9708 are exactly identical! WARNING: Sequences tr_A0A2I2U2P4_A0A2I2U2P4_FELCA_9685 and tr_A0A2Y9K6R1_A0A2Y9K6R1_ENHLU_391180 are exactly identical! WARNING: Sequences tr_U3JR76_U3JR76_FICAL_59894 and tr_A0A218UT78_A0A218UT78_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A0D9R8A4_A0A0D9R8A4_CHLSB_60711 and tr_A0A2K5NMZ5_A0A2K5NMZ5_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A0D9R8A4_A0A0D9R8A4_CHLSB_60711 and tr_A0A2K6E7N4_A0A2K6E7N4_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A0K0FPE3_A0A0K0FPE3_STRVS_75913 and tr_A0A0N5BLE0_A0A0N5BLE0_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A151MEA2_A0A151MEA2_ALLMI_8496 and tr_A0A1U7RVM6_A0A1U7RVM6_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NGW2_A0A151NGW2_ALLMI_8496 and tr_A0A1U7RCT1_A0A1U7RCT1_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0Q3MAK5_A0A0Q3MAK5_AMAAE_12930 and tr_A0A091K1W0_A0A091K1W0_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A0Q3MAK5_A0A0Q3MAK5_AMAAE_12930 and tr_A0A087R965_A0A087R965_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A0Q3MAK5_A0A0Q3MAK5_AMAAE_12930 and tr_A0A091G2G1_A0A091G2G1_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A0Q3MAK5_A0A0Q3MAK5_AMAAE_12930 and tr_A0A0A0AXT0_A0A0A0AXT0_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A0Q3MAK5_A0A0Q3MAK5_AMAAE_12930 and tr_A0A091IV47_A0A091IV47_CALAN_9244 are exactly identical! WARNING: Sequences tr_A0A091ESV0_A0A091ESV0_CORBR_85066 and tr_A0A093Q169_A0A093Q169_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091JG86_A0A091JG86_EGRGA_188379 and tr_A0A091VGT8_A0A091VGT8_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A093PEP7_A0A093PEP7_9PASS_328815 and tr_A0A091WLJ6_A0A091WLJ6_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A093PEP7_A0A093PEP7_9PASS_328815 and tr_A0A093FY57_A0A093FY57_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091VWU0_A0A091VWU0_NIPNI_128390 and tr_A0A091G4M2_A0A091G4M2_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091X053_A0A091X053_NIPNI_128390 and tr_A0A2I0MRV7_A0A2I0MRV7_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A091X053_A0A091X053_NIPNI_128390 and tr_A0A1V4J2N2_A0A1V4J2N2_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A087QTS4_A0A087QTS4_APTFO_9233 and tr_A0A093HH52_A0A093HH52_STRCA_441894 are exactly identical! WARNING: Sequences tr_A0A087QTS4_A0A087QTS4_APTFO_9233 and tr_A0A099ZA76_A0A099ZA76_TINGU_94827 are exactly identical! WARNING: Sequences tr_A0A087QTS4_A0A087QTS4_APTFO_9233 and tr_A0A091FJA5_A0A091FJA5_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A087R966_A0A087R966_APTFO_9233 and tr_A0A093GWG2_A0A093GWG2_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A093I727_A0A093I727_STRCA_441894 and tr_A0A0A0AX40_A0A0A0AX40_CHAVO_50402 are exactly identical! WARNING: Sequences tr_A0A2I0LGZ8_A0A2I0LGZ8_COLLI_8932 and tr_A0A1V4K617_A0A1V4K617_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0LVG9_A0A2I0LVG9_COLLI_8932 and tr_A0A1V4J7J5_A0A1V4J7J5_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A2I0MSJ6_A0A2I0MSJ6_COLLI_8932 and tr_A0A1V4J2W2_A0A1V4J2W2_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A0V0RG82_A0A0V0RG82_9BILA_6336 and tr_A0A0V1D959_A0A0V1D959_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0RG82_A0A0V0RG82_9BILA_6336 and tr_A0A0V0WQL0_A0A0V0WQL0_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0RG82_A0A0V0RG82_9BILA_6336 and tr_A0A0V0V7L9_A0A0V0V7L9_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0RG82_A0A0V0RG82_9BILA_6336 and tr_A0A0V1LQU6_A0A0V1LQU6_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0RG82_A0A0V0RG82_9BILA_6336 and tr_A0A0V1NYZ4_A0A0V1NYZ4_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0RG82_A0A0V0RG82_9BILA_6336 and tr_A0A0V0U8U5_A0A0V0U8U5_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0RIH7_A0A0V0RIH7_9BILA_6336 and tr_A0A0V1CFI1_A0A0V1CFI1_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0RIH7_A0A0V0RIH7_9BILA_6336 and tr_A0A0V0WGX0_A0A0V0WGX0_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0RIH7_A0A0V0RIH7_9BILA_6336 and tr_A0A0V0VV29_A0A0V0VV29_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0RIH7_A0A0V0RIH7_9BILA_6336 and tr_A0A0V0ZG80_A0A0V0ZG80_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0RIH7_A0A0V0RIH7_9BILA_6336 and tr_A0A0V1NVP7_A0A0V1NVP7_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0RIH7_A0A0V0RIH7_9BILA_6336 and tr_A0A0V0U670_A0A0V0U670_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1MPH9_A0A0V1MPH9_9BILA_268474 and tr_A0A0V1HS77_A0A0V1HS77_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A1S3NSB1_A0A1S3NSB1_SALSA_8030 and tr_A0A060W6C6_A0A060W6C6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3NUP9_A0A1S3NUP9_SALSA_8030 and tr_B5X490_B5X490_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3NUP9_A0A1S3NUP9_SALSA_8030 and tr_A0A060WJR8_A0A060WJR8_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3NWT7_A0A1S3NWT7_SALSA_8030 and tr_A0A060VSP4_A0A060VSP4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3T0Q8_A0A1S3T0Q8_SALSA_8030 and tr_A0A060WRW1_A0A060WRW1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1D1UUM1_A0A1D1UUM1_RAMVA_947166 and tr_A0A1D1UZR2_A0A1D1UZR2_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A1D1UUM1_A0A1D1UUM1_RAMVA_947166 and tr_A0A1D1V331_A0A1D1V331_RAMVA_947166 are exactly identical! WARNING: Sequences tr_A0A226MT51_A0A226MT51_CALSU_9009 and tr_A0A226PMC4_A0A226PMC4_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0PP72_A0A2D0PP72_ICTPU_7998 and tr_W5UBB2_W5UBB2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U3V2M7_A0A2U3V2M7_TURTR_9739 and tr_A0A2Y9EY45_A0A2Y9EY45_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U3V2M7_A0A2U3V2M7_TURTR_9739 and tr_A0A384A997_A0A384A997_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4AB19_A0A2U4AB19_TURTR_9739 and tr_A0A2Y9LFZ3_A0A2Y9LFZ3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BVN0_A0A2U4BVN0_TURTR_9739 and tr_A0A2Y9LY20_A0A2Y9LY20_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BVN0_A0A2U4BVN0_TURTR_9739 and tr_A0A2Y9FU84_A0A2Y9FU84_PHYCD_9755 are exactly identical! WARNING: Duplicate sequences found: 160 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q01543/3_mltree/Q01543.raxml.reduced.phy Alignment comprises 1 partitions and 232 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 232 / 232 Gaps: 19.21 % Invariant sites: 0.43 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q01543/3_mltree/Q01543.raxml.rba Parallelization scheme autoconfig: 5 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 1001 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 232 / 18560 [00:00:00] Data distribution: max. searches per worker: 4 Starting ML tree search with 20 distinct starting trees [00:00:00 -269622.542220] Initial branch length optimization [00:00:06 -224291.922970] Model parameter optimization (eps = 10.000000) [00:00:50 -223972.417001] AUTODETECT spr round 1 (radius: 5) [00:04:00 -131436.386610] AUTODETECT spr round 2 (radius: 10) [00:07:24 -94197.406429] AUTODETECT spr round 3 (radius: 15) [00:11:05 -72236.965425] AUTODETECT spr round 4 (radius: 20) [00:15:12 -67428.314614] AUTODETECT spr round 5 (radius: 25) [00:20:07 -65683.591093] SPR radius for FAST iterations: 25 (autodetect) [00:20:07 -65683.591093] Model parameter optimization (eps = 3.000000) [00:20:35 -65637.896305] FAST spr round 1 (radius: 25) [00:24:12 -58202.458308] FAST spr round 2 (radius: 25) [00:27:01 -57719.772968] FAST spr round 3 (radius: 25) [00:29:25 -57691.908540] FAST spr round 4 (radius: 25) [00:31:33 -57689.377187] FAST spr round 5 (radius: 25) [00:33:32 -57689.376055] Model parameter optimization (eps = 1.000000) [00:33:49 -57685.775845] SLOW spr round 1 (radius: 5) [00:36:32 -57678.119076] SLOW spr round 2 (radius: 5) [00:39:11 -57676.470173] SLOW spr round 3 (radius: 5) [00:41:44 -57675.166935] SLOW spr round 4 (radius: 5) [00:44:14 -57675.166691] SLOW spr round 5 (radius: 10) [00:46:52 -57673.372084] SLOW spr round 6 (radius: 5) [00:50:03 -57673.348026] SLOW spr round 7 (radius: 10) [00:53:03 -57672.183282] SLOW spr round 8 (radius: 5) [00:56:09 -57672.183037] SLOW spr round 9 (radius: 10) [00:59:03 -57672.182977] SLOW spr round 10 (radius: 15) [01:03:12 -57670.604953] SLOW spr round 11 (radius: 5) [01:06:31 -57670.604943] SLOW spr round 12 (radius: 10) [01:09:42 -57670.604936] SLOW spr round 13 (radius: 15) [01:12:46] [worker #2] ML tree search #3, logLikelihood: -57680.592815 [01:13:45 -57670.604929] SLOW spr round 14 (radius: 20) [01:19:55 -57670.604924] SLOW spr round 15 (radius: 25) [01:21:19] [worker #3] ML tree search #4, logLikelihood: -57665.067951 [01:28:02 -57670.604919] Model parameter optimization (eps = 0.100000) [01:28:08] [worker #0] ML tree search #1, logLikelihood: -57670.567782 [01:28:08 -270429.126917] Initial branch length optimization [01:28:14 -223023.737710] Model parameter optimization (eps = 10.000000) [01:28:54 -222611.905649] AUTODETECT spr round 1 (radius: 5) [01:32:07 -134941.420549] AUTODETECT spr round 2 (radius: 10) [01:35:23 -98350.450523] AUTODETECT spr round 3 (radius: 15) [01:38:57 -83807.951650] AUTODETECT spr round 4 (radius: 20) [01:43:11 -71863.069763] AUTODETECT spr round 5 (radius: 25) [01:46:41] [worker #1] ML tree search #2, logLikelihood: -57665.894111 [01:47:40 -68295.576220] SPR radius for FAST iterations: 25 (autodetect) [01:47:40 -68295.576220] Model parameter optimization (eps = 3.000000) [01:48:06 -68260.974567] FAST spr round 1 (radius: 25) [01:51:48 -59015.945205] FAST spr round 2 (radius: 25) [01:54:33 -58139.077726] FAST spr round 3 (radius: 25) [01:55:08] [worker #4] ML tree search #5, logLikelihood: -57675.569512 [01:56:55 -57734.539625] FAST spr round 4 (radius: 25) [01:59:11 -57716.958770] FAST spr round 5 (radius: 25) [02:01:14 -57714.470385] FAST spr round 6 (radius: 25) [02:03:11 -57710.786618] FAST spr round 7 (radius: 25) [02:05:06 -57710.785793] Model parameter optimization (eps = 1.000000) [02:05:24 -57708.464491] SLOW spr round 1 (radius: 5) [02:08:03 -57682.180488] SLOW spr round 2 (radius: 5) [02:10:40 -57678.287163] SLOW spr round 3 (radius: 5) [02:13:18 -57677.961318] SLOW spr round 4 (radius: 5) [02:15:53 -57677.961040] SLOW spr round 5 (radius: 10) [02:18:31 -57674.841498] SLOW spr round 6 (radius: 5) [02:21:45 -57673.815502] SLOW spr round 7 (radius: 5) [02:24:33 -57673.814748] SLOW spr round 8 (radius: 10) [02:27:17 -57673.814366] SLOW spr round 9 (radius: 15) [02:31:29 -57673.814155] SLOW spr round 10 (radius: 20) [02:37:28 -57673.814004] SLOW spr round 11 (radius: 25) [02:41:17] [worker #3] ML tree search #9, logLikelihood: -57693.966543 [02:45:04 -57673.813894] Model parameter optimization (eps = 0.100000) [02:45:21] [worker #0] ML tree search #6, logLikelihood: -57672.697575 [02:45:21 -268930.423733] Initial branch length optimization [02:45:26 -221758.473126] Model parameter optimization (eps = 10.000000) [02:46:12 -221343.894762] AUTODETECT spr round 1 (radius: 5) [02:49:23 -136556.528529] AUTODETECT spr round 2 (radius: 10) [02:52:47 -99374.664765] AUTODETECT spr round 3 (radius: 15) [02:56:18 -82758.944003] AUTODETECT spr round 4 (radius: 20) [03:00:22 -72489.953011] AUTODETECT spr round 5 (radius: 25) [03:05:06 -68562.503921] SPR radius for FAST iterations: 25 (autodetect) [03:05:07 -68562.503921] Model parameter optimization (eps = 3.000000) [03:05:27 -68517.427581] FAST spr round 1 (radius: 25) [03:09:05 -58286.721275] FAST spr round 2 (radius: 25) [03:11:58 -57739.138131] FAST spr round 3 (radius: 25) [03:14:22 -57699.379266] FAST spr round 4 (radius: 25) [03:16:33 -57696.267411] FAST spr round 5 (radius: 25) [03:18:35 -57696.254106] Model parameter optimization (eps = 1.000000) [03:18:53 -57689.310347] SLOW spr round 1 (radius: 5) [03:20:57] [worker #2] ML tree search #8, logLikelihood: -57654.076889 [03:21:08] [worker #1] ML tree search #7, logLikelihood: -57683.404992 [03:21:36 -57676.697137] SLOW spr round 2 (radius: 5) [03:24:05] [worker #4] ML tree search #10, logLikelihood: -57669.866591 [03:24:17 -57675.797222] SLOW spr round 3 (radius: 5) [03:26:50 -57675.796976] SLOW spr round 4 (radius: 10) [03:29:31 -57675.774992] SLOW spr round 5 (radius: 15) [03:33:57 -57675.774768] SLOW spr round 6 (radius: 20) [03:40:08 -57675.049091] SLOW spr round 7 (radius: 5) [03:43:32 -57672.605438] SLOW spr round 8 (radius: 5) [03:46:30 -57672.605255] SLOW spr round 9 (radius: 10) [03:49:22 -57672.605174] SLOW spr round 10 (radius: 15) [03:53:36 -57672.605094] SLOW spr round 11 (radius: 20) [03:59:56 -57672.219909] SLOW spr round 12 (radius: 5) [04:03:28 -57667.442147] SLOW spr round 13 (radius: 5) [04:06:34 -57666.226431] SLOW spr round 14 (radius: 5) [04:09:18 -57666.225520] SLOW spr round 15 (radius: 10) [04:12:01 -57666.225514] SLOW spr round 16 (radius: 15) [04:16:24 -57666.225513] SLOW spr round 17 (radius: 20) [04:21:50] [worker #3] ML tree search #14, logLikelihood: -57658.241657 [04:22:41 -57665.916623] SLOW spr round 18 (radius: 5) [04:26:07 -57665.916620] SLOW spr round 19 (radius: 10) [04:29:33 -57665.916620] SLOW spr round 20 (radius: 15) [04:33:40 -57665.916620] SLOW spr round 21 (radius: 20) [04:40:06 -57665.916620] SLOW spr round 22 (radius: 25) [04:42:12] [worker #2] ML tree search #13, logLikelihood: -57687.731663 [04:48:49 -57665.916620] Model parameter optimization (eps = 0.100000) [04:48:55] [worker #0] ML tree search #11, logLikelihood: -57665.848528 [04:48:55 -269758.912273] Initial branch length optimization [04:48:59 -221751.094828] Model parameter optimization (eps = 10.000000) [04:49:43 -221309.796083] AUTODETECT spr round 1 (radius: 5) [04:52:55 -138621.226501] AUTODETECT spr round 2 (radius: 10) [04:56:34 -103272.499960] AUTODETECT spr round 3 (radius: 15) [05:00:31 -79694.633083] AUTODETECT spr round 4 (radius: 20) [05:00:36] [worker #4] ML tree search #15, logLikelihood: -57680.242471 [05:04:43 -70399.343995] AUTODETECT spr round 5 (radius: 25) [05:10:09 -66930.350695] SPR radius for FAST iterations: 25 (autodetect) [05:10:09 -66930.350695] Model parameter optimization (eps = 3.000000) [05:10:41 -66876.934157] FAST spr round 1 (radius: 25) [05:14:21 -58376.587210] FAST spr round 2 (radius: 25) [05:17:05 -57796.035716] FAST spr round 3 (radius: 25) [05:17:46] [worker #1] ML tree search #12, logLikelihood: -57688.008219 [05:19:33 -57717.314010] FAST spr round 4 (radius: 25) [05:21:45 -57712.582921] FAST spr round 5 (radius: 25) [05:23:44 -57712.581761] Model parameter optimization (eps = 1.000000) [05:24:00 -57706.211715] SLOW spr round 1 (radius: 5) [05:26:47 -57687.841045] SLOW spr round 2 (radius: 5) [05:29:24 -57687.219583] SLOW spr round 3 (radius: 5) [05:31:55 -57687.219426] SLOW spr round 4 (radius: 10) [05:34:37 -57683.877058] SLOW spr round 5 (radius: 5) [05:37:51 -57682.790371] SLOW spr round 6 (radius: 5) [05:40:40 -57682.787942] SLOW spr round 7 (radius: 10) [05:43:23 -57682.786890] SLOW spr round 8 (radius: 15) [05:47:28 -57682.786378] SLOW spr round 9 (radius: 20) [05:53:13 -57682.786137] SLOW spr round 10 (radius: 25) [05:57:48] [worker #3] ML tree search #19, logLikelihood: -57669.323985 [06:00:48 -57682.785989] Model parameter optimization (eps = 0.100000) [06:01:09] [worker #0] ML tree search #16, logLikelihood: -57680.834796 [06:04:05] [worker #2] ML tree search #18, logLikelihood: -57686.001846 [06:05:31] [worker #4] ML tree search #20, logLikelihood: -57663.018366 [06:57:56] [worker #1] ML tree search #17, logLikelihood: -57666.893444 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.139776,0.107835) (0.229401,0.325905) (0.298150,0.875625) (0.332674,1.951151) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -57654.076889 AIC score: 119318.153777 / AICc score: 8163378.153777 / BIC score: 126228.862207 Free parameters (model + branch lengths): 2005 WARNING: Number of free parameters (K=2005) is larger than alignment size (n=232). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 317 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q01543/3_mltree/Q01543.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q01543/3_mltree/Q01543.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q01543/3_mltree/Q01543.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q01543/3_mltree/Q01543.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/Q01543/3_mltree/Q01543.raxml.log Analysis started: 07-Jul-2021 10:12:58 / finished: 07-Jul-2021 17:10:55 Elapsed time: 25076.969 seconds Consumed energy: 1965.939 Wh (= 10 km in an electric car, or 49 km with an e-scooter!)