RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 02-Jun-2021 22:47:58 as follows: raxml-ng --ancestral --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q00266/2_msa/Q00266_nogap_msa.fasta --tree /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q00266/3_mltree/Q00266.raxml.bestTree_unrooted --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q00266/4_raxmlng_ancestral/Q00266 --threads 4 Analysis options: run mode: Ancestral state reconstruction start tree(s): user random seed: 1622663278 tip-inner: ON pattern compression: OFF per-rate scalers: OFF site repeats: OFF branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (4 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q00266/2_msa/Q00266_nogap_msa.fasta [00:00:00] Loaded alignment with 1001 taxa and 395 sites WARNING: Sequences sp_Q3THS6_METK2_MOUSE_10090 and tr_A0A1S3GRK1_A0A1S3GRK1_DIPOR_10020 are exactly identical! WARNING: Sequences sp_Q3THS6_METK2_MOUSE_10090 and tr_A0A1U7QL04_A0A1U7QL04_MESAU_10036 are exactly identical! WARNING: Sequences tr_M3YC06_M3YC06_MUSPF_9669 and tr_G3TK10_G3TK10_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YC06_M3YC06_MUSPF_9669 and tr_M3WG37_M3WG37_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YC06_M3YC06_MUSPF_9669 and tr_A0A1S3A5X8_A0A1S3A5X8_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3YC06_M3YC06_MUSPF_9669 and tr_A0A2U3X0P9_A0A2U3X0P9_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YC06_M3YC06_MUSPF_9669 and tr_A0A2U3Y2L0_A0A2U3Y2L0_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YC06_M3YC06_MUSPF_9669 and tr_A0A2Y9JPZ3_A0A2Y9JPZ3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_B6QS50_B6QS50_TALMQ_441960 and tr_A0A093XRC6_A0A093XRC6_TALMA_1077442 are exactly identical! WARNING: Sequences tr_G3QQH2_G3QQH2_GORGO_9595 and sp_Q5R5H1_METK2_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3QQH2_G3QQH2_GORGO_9595 and tr_H2QI93_H2QI93_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QQH2_G3QQH2_GORGO_9595 and sp_P31153_METK2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QQH2_G3QQH2_GORGO_9595 and tr_H9FUH5_H9FUH5_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QQH2_G3QQH2_GORGO_9595 and tr_A0A096NZT8_A0A096NZT8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QQH2_G3QQH2_GORGO_9595 and tr_A0A0D9RUF1_A0A0D9RUF1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QQH2_G3QQH2_GORGO_9595 and tr_A0A2K5KK35_A0A2K5KK35_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QQH2_G3QQH2_GORGO_9595 and tr_A0A2R9C4C8_A0A2R9C4C8_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QSU0_G3QSU0_GORGO_9595 and tr_H2Q259_H2Q259_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QSU0_G3QSU0_GORGO_9595 and sp_Q00266_METK1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QSU0_G3QSU0_GORGO_9595 and tr_A0A2R9A4P2_A0A2R9A4P2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G2WZ30_G2WZ30_VERDV_498257 and tr_A0A0G4LXW6_A0A0G4LXW6_9PEZI_100787 are exactly identical! WARNING: Sequences tr_C0NJ74_C0NJ74_AJECG_447093 and tr_F0UAT3_F0UAT3_AJEC8_544711 are exactly identical! WARNING: Sequences tr_A0A0R3NRQ1_A0A0R3NRQ1_DROPS_46245 and tr_B4GQT3_B4GQT3_DROPE_7234 are exactly identical! WARNING: Sequences tr_B8NJU1_B8NJU1_ASPFN_332952 and tr_Q2U2Q7_Q2U2Q7_ASPOR_510516 are exactly identical! WARNING: Sequences tr_B8NJU1_B8NJU1_ASPFN_332952 and tr_A0A1S9DJM6_A0A1S9DJM6_ASPOZ_5062 are exactly identical! WARNING: Sequences tr_A0A179V1P5_A0A179V1P5_BLAGS_559298 and tr_C5GJZ1_C5GJZ1_AJEDR_559297 are exactly identical! WARNING: Sequences tr_E2R431_E2R431_CANLF_9615 and tr_H0XMD0_H0XMD0_OTOGA_30611 are exactly identical! WARNING: Sequences tr_E2R431_E2R431_CANLF_9615 and tr_G1L600_G1L600_AILME_9646 are exactly identical! WARNING: Sequences tr_F9F407_F9F407_FUSOF_660025 and tr_W7LC88_W7LC88_GIBM7_334819 are exactly identical! WARNING: Sequences tr_F9F407_F9F407_FUSOF_660025 and tr_A0A0D2X9R5_A0A0D2X9R5_FUSO4_426428 are exactly identical! WARNING: Sequences tr_F9F407_F9F407_FUSOF_660025 and tr_N4TF82_N4TF82_FUSC1_1229664 are exactly identical! WARNING: Sequences tr_F9F407_F9F407_FUSOF_660025 and tr_X0C7H8_X0C7H8_FUSOX_1089458 are exactly identical! WARNING: Sequences tr_F9F407_F9F407_FUSOF_660025 and tr_A0A2H3T1E6_A0A2H3T1E6_FUSOX_5507 are exactly identical! WARNING: Sequences tr_F9F407_F9F407_FUSOF_660025 and tr_A0A2H3I2S8_A0A2H3I2S8_FUSOX_327505 are exactly identical! WARNING: Sequences tr_F9F407_F9F407_FUSOF_660025 and tr_A0A2K0W586_A0A2K0W586_GIBNY_42673 are exactly identical! WARNING: Sequences tr_F9F407_F9F407_FUSOF_660025 and tr_A0A365N6E9_A0A365N6E9_GIBIN_948311 are exactly identical! WARNING: Sequences tr_E9EW80_E9EW80_METRA_655844 and tr_A0A0B4I5C5_A0A0B4I5C5_METMF_1276143 are exactly identical! WARNING: Sequences tr_E9EW80_E9EW80_METRA_655844 and tr_A0A0D9NYS5_A0A0D9NYS5_METAN_1291518 are exactly identical! WARNING: Sequences tr_J4WJV4_J4WJV4_BEAB2_655819 and tr_A0A0A2W126_A0A0A2W126_BEABA_1245745 are exactly identical! WARNING: Sequences tr_J4WJV4_J4WJV4_BEAB2_655819 and tr_A0A162KEV1_A0A162KEV1_9HYPO_1081107 are exactly identical! WARNING: Sequences tr_J4WJV4_J4WJV4_BEAB2_655819 and tr_A0A2N6NQ30_A0A2N6NQ30_BEABA_176275 are exactly identical! WARNING: Sequences tr_A0A158NRC9_A0A158NRC9_ATTCE_12957 and tr_A0A151JBL9_A0A151JBL9_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158NRC9_A0A158NRC9_ATTCE_12957 and tr_A0A195BEE2_A0A195BEE2_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NRC9_A0A158NRC9_ATTCE_12957 and tr_A0A195FJV1_A0A195FJV1_9HYME_34720 are exactly identical! WARNING: Sequences tr_G9P419_G9P419_HYPAI_452589 and tr_A0A0W7VUF9_A0A0W7VUF9_9HYPO_398673 are exactly identical! WARNING: Sequences tr_A2QQJ1_A2QQJ1_ASPNC_425011 and tr_G3YGG1_G3YGG1_ASPNA_380704 are exactly identical! WARNING: Sequences tr_A2QQJ1_A2QQJ1_ASPNC_425011 and tr_A0A319ANU5_A0A319ANU5_9EURO_1450533 are exactly identical! WARNING: Sequences tr_F7ACZ9_F7ACZ9_MACMU_9544 and tr_A0A0D9RAK5_A0A0D9RAK5_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7ACZ9_F7ACZ9_MACMU_9544 and tr_A0A2K6DTZ7_A0A2K6DTZ7_MACNE_9545 are exactly identical! WARNING: Sequences tr_F7ACZ9_F7ACZ9_MACMU_9544 and tr_A0A2K5Y258_A0A2K5Y258_MANLE_9568 are exactly identical! WARNING: Sequences tr_G7XRE3_G7XRE3_ASPKW_1033177 and tr_A0A117DZV1_A0A117DZV1_ASPNG_5061 are exactly identical! WARNING: Sequences tr_G7XRE3_G7XRE3_ASPKW_1033177 and tr_A0A146FX29_A0A146FX29_9EURO_1069201 are exactly identical! WARNING: Sequences tr_G7XRE3_G7XRE3_ASPKW_1033177 and tr_A0A1L9NN90_A0A1L9NN90_ASPTU_767770 are exactly identical! WARNING: Sequences tr_G7XRE3_G7XRE3_ASPKW_1033177 and tr_A0A317W865_A0A317W865_9EURO_1448314 are exactly identical! WARNING: Sequences tr_F4NV90_F4NV90_BATDJ_684364 and tr_A0A177W904_A0A177W904_BATDE_403673 are exactly identical! WARNING: Sequences tr_G2YL11_G2YL11_BOTF4_999810 and tr_M7UEC0_M7UEC0_BOTF1_1290391 are exactly identical! WARNING: Sequences tr_B3S5D6_B3S5D6_TRIAD_10228 and tr_A0A369SHW1_A0A369SHW1_9METZ_287889 are exactly identical! WARNING: Sequences tr_A7E3T7_A7E3T7_BOVIN_9913 and tr_A0A2U3V0N3_A0A2U3V0N3_TURTR_9739 are exactly identical! WARNING: Sequences tr_A7E3T7_A7E3T7_BOVIN_9913 and tr_A0A2Y9LR43_A0A2Y9LR43_DELLE_9749 are exactly identical! WARNING: Sequences tr_A7E3T7_A7E3T7_BOVIN_9913 and tr_A0A2Y9FDV9_A0A2Y9FDV9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A7E3T7_A7E3T7_BOVIN_9913 and tr_A0A383ZJU9_A0A383ZJU9_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A287UEZ3_A0A287UEZ3_HORVV_112509 and tr_F2DA80_F2DA80_HORVV_112509 are exactly identical! WARNING: Sequences tr_M0XNT1_M0XNT1_HORVV_112509 and tr_M7YK23_M7YK23_TRIUA_4572 are exactly identical! WARNING: Sequences tr_M0XNT1_M0XNT1_HORVV_112509 and tr_A0A1D6B308_A0A1D6B308_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M7YB04_M7YB04_TRIUA_4572 and tr_A0A3B6NQ80_A0A3B6NQ80_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M7ZXH5_M7ZXH5_TRIUA_4572 and tr_W5GBW4_W5GBW4_WHEAT_4565 are exactly identical! WARNING: Sequences tr_M2S848_M2S848_COCSN_665912 and tr_W6ZKF3_W6ZKF3_COCMI_930090 are exactly identical! WARNING: Sequences tr_V2X2J5_V2X2J5_MONRO_1381753 and tr_A0A0W0EUE0_A0A0W0EUE0_9AGAR_221103 are exactly identical! WARNING: Sequences tr_W2QHP3_W2QHP3_PHYPN_761204 and tr_W2JHA3_W2JHA3_PHYPR_4792 are exactly identical! WARNING: Sequences tr_A0A010QI30_A0A010QI30_9PEZI_1445577 and tr_A0A135V5H7_A0A135V5H7_9PEZI_1209931 are exactly identical! WARNING: Sequences tr_A0A0D2P7N5_A0A0D2P7N5_GOSRA_29730 and tr_A0A1U8K016_A0A1U8K016_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A0M9WII6_A0A0M9WII6_9EURO_229535 and tr_A0A1V6RDY0_A0A1V6RDY0_9EURO_60172 are exactly identical! WARNING: Sequences tr_A0A151NPC7_A0A151NPC7_ALLMI_8496 and tr_A0A1U7RY23_A0A1U7RY23_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A0V1CE37_A0A0V1CE37_TRIBR_45882 and tr_A0A0V0WXM6_A0A0V0WXM6_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1CE37_A0A0V1CE37_TRIBR_45882 and tr_A0A0V0VTG4_A0A0V0VTG4_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1CE37_A0A0V1CE37_TRIBR_45882 and tr_A0A0V1KTL0_A0A0V1KTL0_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0P1BP68_A0A0P1BP68_9BASI_401625 and tr_A0A316W135_A0A316W135_9BASI_1522189 are exactly identical! WARNING: Sequences tr_A0A101MCS7_A0A101MCS7_9EURO_48697 and tr_A0A1V6NGG1_A0A1V6NGG1_9EURO_60169 are exactly identical! WARNING: Sequences tr_A0A1S3XHF5_A0A1S3XHF5_TOBAC_4097 and tr_A0A1U7XUI2_A0A1U7XUI2_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S4BN22_A0A1S4BN22_TOBAC_4097 and tr_A0A1U7VGZ4_A0A1U7VGZ4_NICSY_4096 are exactly identical! WARNING: Sequences tr_A0A1S3KZ43_A0A1S3KZ43_SALSA_8030 and tr_A0A060W1P4_A0A060W1P4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1L9WW21_A0A1L9WW21_ASPAC_690307 and tr_A0A2V5HD36_A0A2V5HD36_9EURO_1450538 are exactly identical! WARNING: Sequences tr_A0A2H3C5Q4_A0A2H3C5Q4_9AGAR_1076256 and tr_A0A284RC81_A0A284RC81_9AGAR_47428 are exactly identical! WARNING: Sequences tr_A0A317WG07_A0A317WG07_9EURO_1450535 and tr_A0A319ES38_A0A319ES38_9EURO_1448318 are exactly identical! WARNING: Duplicate sequences found: 84 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q00266/4_raxmlng_ancestral/Q00266.raxml.reduced.phy Alignment comprises 1 partitions and 395 sites Partition 0: noname Model: LG4X+R4 Alignment sites: 395 Gaps: 2.82 % Invariant sites: 3.80 % NOTE: Binary MSA file already exists: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q00266/4_raxmlng_ancestral/Q00266.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 4 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Loading user starting tree(s) from: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q00266/3_mltree/Q00266.raxml.bestTree_unrooted [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 99 / 7920 [00:00:00] Data distribution: max. searches per worker: 1 Starting ML tree search with 1 distinct starting trees [00:00:00] Tree #1, initial LogLikelihood: -102244.592280 [00:00:00 -102244.592280] Initial branch length optimization [00:00:01 -100770.528132] Model parameter optimization (eps = 0.100000) [00:00:13] Tree #1, final logLikelihood: -100740.774637 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.309121,0.184034) (0.378924,0.640643) (0.161026,1.343766) (0.150930,3.206622) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Marginal ancestral probabilities saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q00266/4_raxmlng_ancestral/Q00266.raxml.ancestralProbs Reconstructed ancestral sequences saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q00266/4_raxmlng_ancestral/Q00266.raxml.ancestralStates Node-labeled tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q00266/4_raxmlng_ancestral/Q00266.raxml.ancestralTree Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_020621/phylogeny-snakemake/results/Q00266/4_raxmlng_ancestral/Q00266.raxml.log Analysis started: 02-Jun-2021 22:47:58 / finished: 02-Jun-2021 22:48:15 Elapsed time: 16.657 seconds