RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 20-Jul-2021 00:02:55 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P98077/2_msa/P98077_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P98077/3_mltree/P98077 --seed 2 --threads 2 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P98077/2_msa/P98077_trimmed_msa.fasta [00:00:00] Loaded alignment with 999 taxa and 107 sites WARNING: Sequences tr_B4Q624_B4Q624_DROSI_7240 and tr_B4ICV4_B4ICV4_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QN62_B4QN62_DROSI_7240 and tr_Q9V3C8_Q9V3C8_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QN62_B4QN62_DROSI_7240 and tr_B4HKQ4_B4HKQ4_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QVG0_B4QVG0_DROSI_7240 and tr_A0A0B4LHY5_A0A0B4LHY5_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QVG0_B4QVG0_DROSI_7240 and tr_B4ICF2_B4ICF2_DROSE_7238 are exactly identical! WARNING: Sequences tr_A0A2R8QG88_A0A2R8QG88_DANRE_7955 and tr_A0A2R8QR19_A0A2R8QR19_DANRE_7955 are exactly identical! WARNING: Sequences tr_A0A1D5NYP8_A0A1D5NYP8_CHICK_9031 and tr_A0A226MFU5_A0A226MFU5_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5NYP8_A0A1D5NYP8_CHICK_9031 and tr_A0A226MVI6_A0A226MVI6_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A1D5PI26_A0A1D5PI26_CHICK_9031 and tr_A0A226NAW0_A0A226NAW0_CALSU_9009 are exactly identical! WARNING: Sequences tr_A0A1D5PI26_A0A1D5PI26_CHICK_9031 and tr_A0A226PFJ9_A0A226PFJ9_COLVI_9014 are exactly identical! WARNING: Sequences tr_M3Y482_M3Y482_MUSPF_9669 and tr_A0A2Y9IDQ0_A0A2Y9IDQ0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YF02_M3YF02_MUSPF_9669 and tr_A0A2Y9LII0_A0A2Y9LII0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YMB4_M3YMB4_MUSPF_9669 and tr_F1P8N3_F1P8N3_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YMB4_M3YMB4_MUSPF_9669 and sp_Q9TTY2_FER_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YMB4_M3YMB4_MUSPF_9669 and tr_G3TAN0_G3TAN0_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3YMB4_M3YMB4_MUSPF_9669 and tr_L5KIQ6_L5KIQ6_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YMB4_M3YMB4_MUSPF_9669 and tr_A0A1S3A4K7_A0A1S3A4K7_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3YMB4_M3YMB4_MUSPF_9669 and tr_A0A2U3VGE1_A0A2U3VGE1_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YMB4_M3YMB4_MUSPF_9669 and tr_A0A2U3XBL4_A0A2U3XBL4_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YMB4_M3YMB4_MUSPF_9669 and tr_A0A2Y9QWL6_A0A2Y9QWL6_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3YMB4_M3YMB4_MUSPF_9669 and tr_A0A2Y9JRP0_A0A2Y9JRP0_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YMB4_M3YMB4_MUSPF_9669 and tr_A0A384D7V4_A0A384D7V4_URSMA_29073 are exactly identical! WARNING: Sequences tr_B4JYY2_B4JYY2_DROGR_7222 and tr_B4LYY8_B4LYY8_DROVI_7244 are exactly identical! WARNING: Sequences tr_G1R2H0_G1R2H0_NOMLE_61853 and tr_G3R4F7_G3R4F7_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1R2H0_G1R2H0_NOMLE_61853 and tr_H2NN64_H2NN64_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1R2H0_G1R2H0_NOMLE_61853 and tr_H2Q9E1_H2Q9E1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1R2H0_G1R2H0_NOMLE_61853 and sp_Q6S5L8_SHC4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1R2H0_G1R2H0_NOMLE_61853 and tr_F7A7H5_F7A7H5_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1R2H0_G1R2H0_NOMLE_61853 and tr_G7PBA3_G7PBA3_MACFA_9541 are exactly identical! WARNING: Sequences tr_G1R2H0_G1R2H0_NOMLE_61853 and tr_A0A096NM14_A0A096NM14_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1R2H0_G1R2H0_NOMLE_61853 and tr_A0A0D9RDU2_A0A0D9RDU2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1R2H0_G1R2H0_NOMLE_61853 and tr_A0A2K6CJ02_A0A2K6CJ02_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1R2H0_G1R2H0_NOMLE_61853 and tr_A0A2K5YFV3_A0A2K5YFV3_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1R2H0_G1R2H0_NOMLE_61853 and tr_A0A2R9CBX3_A0A2R9CBX3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RKA0_G1RKA0_NOMLE_61853 and tr_G3R3G4_G3R3G4_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RKA0_G1RKA0_NOMLE_61853 and tr_H2PG82_H2PG82_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RKA0_G1RKA0_NOMLE_61853 and tr_K7CY17_K7CY17_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RKA0_G1RKA0_NOMLE_61853 and sp_P16591_FER_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RKA0_G1RKA0_NOMLE_61853 and tr_F7GUD3_F7GUD3_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RKA0_G1RKA0_NOMLE_61853 and tr_A0A096MMK6_A0A096MMK6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RKA0_G1RKA0_NOMLE_61853 and tr_A0A0D9RRH1_A0A0D9RRH1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RKA0_G1RKA0_NOMLE_61853 and tr_A0A2K5NKC8_A0A2K5NKC8_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RKA0_G1RKA0_NOMLE_61853 and tr_A0A2K6CJQ2_A0A2K6CJQ2_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RKA0_G1RKA0_NOMLE_61853 and tr_A0A2K5YE13_A0A2K5YE13_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1NXS1_G1NXS1_MYOLU_59463 and tr_I3LVW7_I3LVW7_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G3HC68_G3HC68_CRIGR_10029 and sp_Q5M824_SHC1_RAT_10116 are exactly identical! WARNING: Sequences tr_G3HF31_G3HF31_CRIGR_10029 and sp_O70142_SHC2_RAT_10116 are exactly identical! WARNING: Sequences tr_G3RC60_G3RC60_GORGO_9595 and tr_H2R8L2_H2R8L2_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RC60_G3RC60_GORGO_9595 and tr_F6ZGT4_F6ZGT4_HORSE_9796 are exactly identical! WARNING: Sequences tr_G3RC60_G3RC60_GORGO_9595 and tr_H0XZL7_H0XZL7_OTOGA_30611 are exactly identical! WARNING: Sequences tr_G3RC60_G3RC60_GORGO_9595 and tr_H0W707_H0W707_CAVPO_10141 are exactly identical! WARNING: Sequences tr_G3RC60_G3RC60_GORGO_9595 and sp_P29353_SHC1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RC60_G3RC60_GORGO_9595 and tr_F7HPR8_F7HPR8_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3RC60_G3RC60_GORGO_9595 and tr_F1RGP5_F1RGP5_PIG_9823 are exactly identical! WARNING: Sequences tr_G3RC60_G3RC60_GORGO_9595 and tr_G7NUJ6_G7NUJ6_MACFA_9541 are exactly identical! WARNING: Sequences tr_G3RC60_G3RC60_GORGO_9595 and tr_A0A091D348_A0A091D348_FUKDA_885580 are exactly identical! WARNING: Sequences tr_G3RC60_G3RC60_GORGO_9595 and tr_A0A0D9S5C2_A0A0D9S5C2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3RC60_G3RC60_GORGO_9595 and tr_A0A1S3F3U3_A0A1S3F3U3_DIPOR_10020 are exactly identical! WARNING: Sequences tr_G3RC60_G3RC60_GORGO_9595 and tr_A0A2K6DER0_A0A2K6DER0_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3RC60_G3RC60_GORGO_9595 and tr_A0A2K6A6Y1_A0A2K6A6Y1_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3RC60_G3RC60_GORGO_9595 and tr_A0A2R9ADH9_A0A2R9ADH9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RC60_G3RC60_GORGO_9595 and tr_A0A2Y9LZK9_A0A2Y9LZK9_DELLE_9749 are exactly identical! WARNING: Sequences tr_G3RC60_G3RC60_GORGO_9595 and tr_A0A2Y9EV45_A0A2Y9EV45_PHYCD_9755 are exactly identical! WARNING: Sequences tr_G3RC60_G3RC60_GORGO_9595 and tr_A0A383ZTY0_A0A383ZTY0_BALAS_310752 are exactly identical! WARNING: Sequences tr_H2N6R0_H2N6R0_PONAB_9601 and sp_O75815_BCAR3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_H2PSL9_H2PSL9_PONAB_9601 and tr_A0A2I3RG08_A0A2I3RG08_PANTR_9598 are exactly identical! WARNING: Sequences tr_H2PSL9_H2PSL9_PONAB_9601 and sp_Q92529_SHC3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A0R3NI60_A0A0R3NI60_DROPS_46245 and tr_B4GEJ4_B4GEJ4_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q29FA1_Q29FA1_DROPS_46245 and tr_B4H1L5_B4H1L5_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q29NX3_Q29NX3_DROPS_46245 and tr_B4GJQ6_B4GJQ6_DROPE_7234 are exactly identical! WARNING: Sequences tr_E2RSS6_E2RSS6_CANLF_9615 and tr_G3THH9_G3THH9_LOXAF_9785 are exactly identical! WARNING: Sequences tr_E2RSS6_E2RSS6_CANLF_9615 and tr_G1MAQ2_G1MAQ2_AILME_9646 are exactly identical! WARNING: Sequences tr_E2RSS6_E2RSS6_CANLF_9615 and tr_A0A337RXI4_A0A337RXI4_FELCA_9685 are exactly identical! WARNING: Sequences tr_E2RSS6_E2RSS6_CANLF_9615 and tr_A0A2U3ZDL9_A0A2U3ZDL9_ODORO_9708 are exactly identical! WARNING: Sequences tr_E2RSS6_E2RSS6_CANLF_9615 and tr_A0A2U3XRF0_A0A2U3XRF0_LEPWE_9713 are exactly identical! WARNING: Sequences tr_E2RSS6_E2RSS6_CANLF_9615 and tr_A0A2Y9E494_A0A2Y9E494_TRIMA_127582 are exactly identical! WARNING: Sequences tr_E2RSS6_E2RSS6_CANLF_9615 and tr_A0A2Y9LEW5_A0A2Y9LEW5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_E2RSS6_E2RSS6_CANLF_9615 and tr_A0A384BLK5_A0A384BLK5_URSMA_29073 are exactly identical! WARNING: Sequences tr_F1PPW0_F1PPW0_CANLF_9615 and tr_M3W1S4_M3W1S4_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1PPW0_F1PPW0_CANLF_9615 and tr_A0A2U3WLR8_A0A2U3WLR8_ODORO_9708 are exactly identical! WARNING: Sequences tr_F1PPW0_F1PPW0_CANLF_9615 and tr_A0A2U3YQM6_A0A2U3YQM6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_F1PPW0_F1PPW0_CANLF_9615 and tr_A0A2Y9KA56_A0A2Y9KA56_ENHLU_391180 are exactly identical! WARNING: Sequences tr_F1PQC4_F1PQC4_CANLF_9615 and tr_G1LYG8_G1LYG8_AILME_9646 are exactly identical! WARNING: Sequences tr_F1PQC4_F1PQC4_CANLF_9615 and tr_M3VWH1_M3VWH1_FELCA_9685 are exactly identical! WARNING: Sequences tr_F1PQC4_F1PQC4_CANLF_9615 and tr_A0A384CK19_A0A384CK19_URSMA_29073 are exactly identical! WARNING: Sequences tr_K7AMF6_K7AMF6_PANTR_9598 and tr_A0A2R9A8B9_A0A2R9A8B9_PANPA_9597 are exactly identical! WARNING: Sequences tr_W5NZ14_W5NZ14_SHEEP_9940 and sp_Q0IIE2_SHC1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5PCU8_W5PCU8_SHEEP_9940 and tr_F1MP52_F1MP52_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5QBV1_W5QBV1_SHEEP_9940 and tr_E1BNE0_E1BNE0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5QIM6_W5QIM6_SHEEP_9940 and tr_G1L406_G1L406_AILME_9646 are exactly identical! WARNING: Sequences tr_W5QIM6_W5QIM6_SHEEP_9940 and tr_A0A384DAU7_A0A384DAU7_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A3B5Q6F1_A0A3B5Q6F1_XIPMA_8083 and tr_A0A096MGT5_A0A096MGT5_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A088AI81_A0A088AI81_APIME_7460 and tr_A0A0L7QKJ6_A0A0L7QKJ6_9HYME_597456 are exactly identical! WARNING: Sequences tr_A0A088AI81_A0A088AI81_APIME_7460 and tr_A0A2A3EBE0_A0A2A3EBE0_APICC_94128 are exactly identical! WARNING: Sequences tr_A0A158N9F4_A0A158N9F4_ATTCE_12957 and tr_A0A195BC42_A0A195BC42_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158N9Q5_A0A158N9Q5_ATTCE_12957 and tr_F4WRI0_F4WRI0_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158N9Q5_A0A158N9Q5_ATTCE_12957 and tr_A0A151XGX3_A0A151XGX3_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158N9Q5_A0A158N9Q5_ATTCE_12957 and tr_A0A151ISY3_A0A151ISY3_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158N9Q5_A0A158N9Q5_ATTCE_12957 and tr_A0A195BNP3_A0A195BNP3_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158N9Q5_A0A158N9Q5_ATTCE_12957 and tr_A0A195F8C8_A0A195F8C8_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NC43_A0A158NC43_ATTCE_12957 and tr_A0A195BFW4_A0A195BFW4_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158NW88_A0A158NW88_ATTCE_12957 and tr_F4WBU3_F4WBU3_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158NW88_A0A158NW88_ATTCE_12957 and tr_A0A151WN41_A0A151WN41_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158NW88_A0A158NW88_ATTCE_12957 and tr_A0A195DJ98_A0A195DJ98_9HYME_471704 are exactly identical! WARNING: Sequences tr_I3J7E1_I3J7E1_ORENI_8128 and tr_G3P6B2_G3P6B2_GASAC_69293 are exactly identical! WARNING: Sequences tr_A0A287CU56_A0A287CU56_ICTTR_43179 and tr_H0VAD8_H0VAD8_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A0A3B5JUP4_A0A3B5JUP4_TAKRU_31033 and tr_H3DLV1_H3DLV1_TETNG_99883 are exactly identical! WARNING: Sequences sp_P98077_SHC2_HUMAN_9606 and tr_A0A2R9CHI5_A0A2R9CHI5_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A158Q2E6_A0A158Q2E6_BRUMA_6279 and tr_A0A0N4TJI5_A0A0N4TJI5_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A158Q2E6_A0A158Q2E6_BRUMA_6279 and tr_A0A158PT04_A0A158PT04_9BILA_42155 are exactly identical! WARNING: Sequences tr_F6QEQ2_F6QEQ2_MACMU_9544 and tr_A0A0A0MUC7_A0A0A0MUC7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6QEQ2_F6QEQ2_MACMU_9544 and tr_A0A0D9RKV3_A0A0D9RKV3_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6QEQ2_F6QEQ2_MACMU_9544 and tr_A0A2K5L1P1_A0A2K5L1P1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6QEQ2_F6QEQ2_MACMU_9544 and tr_A0A2K6DF52_A0A2K6DF52_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6QEQ2_F6QEQ2_MACMU_9544 and tr_A0A2K6AA74_A0A2K6AA74_MANLE_9568 are exactly identical! WARNING: Sequences tr_F7H023_F7H023_MACMU_9544 and tr_G7NTP3_G7NTP3_MACFA_9541 are exactly identical! WARNING: Sequences tr_F7H023_F7H023_MACMU_9544 and tr_A0A0D9S6Q7_A0A0D9S6Q7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F7H023_F7H023_MACMU_9544 and tr_A0A2K5MFT1_A0A2K5MFT1_CERAT_9531 are exactly identical! WARNING: Sequences tr_F7H023_F7H023_MACMU_9544 and tr_A0A2K5Z8U0_A0A2K5Z8U0_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3PCE7_G3PCE7_GASAC_69293 and tr_A0A087YL35_A0A087YL35_POEFO_48698 are exactly identical! WARNING: Sequences tr_G3T4J5_G3T4J5_LOXAF_9785 and tr_A0A2Y9E7V3_A0A2Y9E7V3_TRIMA_127582 are exactly identical! WARNING: Sequences tr_H0YQB5_H0YQB5_TAEGU_59729 and tr_A0A218UPX8_A0A218UPX8_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0YRT1_H0YRT1_TAEGU_59729 and tr_A0A0Q3M347_A0A0Q3M347_AMAAE_12930 are exactly identical! WARNING: Sequences tr_H0YRT1_H0YRT1_TAEGU_59729 and tr_A0A091IRN3_A0A091IRN3_EGRGA_188379 are exactly identical! WARNING: Sequences tr_H0YRT1_H0YRT1_TAEGU_59729 and tr_A0A091UQA4_A0A091UQA4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0YRT1_H0YRT1_TAEGU_59729 and tr_A0A087RBL4_A0A087RBL4_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0YRT1_H0YRT1_TAEGU_59729 and tr_A0A093HFE4_A0A093HFE4_STRCA_441894 are exactly identical! WARNING: Sequences tr_H0YRT1_H0YRT1_TAEGU_59729 and tr_A0A091WNM3_A0A091WNM3_OPIHO_30419 are exactly identical! WARNING: Sequences tr_H0YRT1_H0YRT1_TAEGU_59729 and tr_A0A099ZPS8_A0A099ZPS8_TINGU_94827 are exactly identical! WARNING: Sequences tr_H0YRT1_H0YRT1_TAEGU_59729 and tr_A0A091G8U1_A0A091G8U1_9AVES_55661 are exactly identical! WARNING: Sequences tr_H0YRT1_H0YRT1_TAEGU_59729 and tr_A0A0A0A4N8_A0A0A0A4N8_CHAVO_50402 are exactly identical! WARNING: Sequences tr_H0YRT1_H0YRT1_TAEGU_59729 and tr_A0A218UUL2_A0A218UUL2_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0Z180_H0Z180_TAEGU_59729 and tr_A0A0Q3P5T0_A0A0Q3P5T0_AMAAE_12930 are exactly identical! WARNING: Sequences tr_H0Z180_H0Z180_TAEGU_59729 and tr_A0A091EG18_A0A091EG18_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0Z180_H0Z180_TAEGU_59729 and tr_A0A091JAV7_A0A091JAV7_EGRGA_188379 are exactly identical! WARNING: Sequences tr_H0Z180_H0Z180_TAEGU_59729 and tr_A0A087RHD9_A0A087RHD9_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0Z180_H0Z180_TAEGU_59729 and tr_A0A093HXD4_A0A093HXD4_STRCA_441894 are exactly identical! WARNING: Sequences tr_H0Z180_H0Z180_TAEGU_59729 and tr_A0A091IT12_A0A091IT12_CALAN_9244 are exactly identical! WARNING: Sequences tr_H0Z180_H0Z180_TAEGU_59729 and tr_A0A1U8DNJ8_A0A1U8DNJ8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_H0Z180_H0Z180_TAEGU_59729 and tr_A0A218UMX8_A0A218UMX8_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0Z659_H0Z659_TAEGU_59729 and tr_A0A218VEW8_A0A218VEW8_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZA57_H0ZA57_TAEGU_59729 and tr_U3KAF4_U3KAF4_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZA57_H0ZA57_TAEGU_59729 and tr_A0A091VIV3_A0A091VIV3_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0ZA57_H0ZA57_TAEGU_59729 and tr_A0A087QWP0_A0A087QWP0_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0ZA57_H0ZA57_TAEGU_59729 and tr_A0A0A0AK22_A0A0A0AK22_CHAVO_50402 are exactly identical! WARNING: Sequences tr_H0ZA57_H0ZA57_TAEGU_59729 and tr_A0A218V7Q4_A0A218V7Q4_9PASE_299123 are exactly identical! WARNING: Sequences tr_A0A1X7UC28_A0A1X7UC28_AMPQE_400682 and tr_R7T948_R7T948_CAPTE_283909 are exactly identical! WARNING: Sequences tr_A0A1X7UC28_A0A1X7UC28_AMPQE_400682 and tr_A0A226MG33_A0A226MG33_COLVI_9014 are exactly identical! WARNING: Sequences tr_E2BQA4_E2BQA4_HARSA_610380 and tr_A0A026WH98_A0A026WH98_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_E3M319_E3M319_CAERE_31234 and tr_E3M324_E3M324_CAERE_31234 are exactly identical! WARNING: Sequences tr_G1L7B3_G1L7B3_AILME_9646 and tr_M3WML8_M3WML8_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1L7B3_G1L7B3_AILME_9646 and tr_A0A2U3VKP9_A0A2U3VKP9_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1L7B3_G1L7B3_AILME_9646 and tr_A0A2U3Z4J3_A0A2U3Z4J3_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1M5C6_G1M5C6_AILME_9646 and tr_A0A384B3R6_A0A384B3R6_BALAS_310752 are exactly identical! WARNING: Sequences tr_G7PSN5_G7PSN5_MACFA_9541 and tr_A0A096P1X8_A0A096P1X8_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G7PSN5_G7PSN5_MACFA_9541 and tr_A0A0D9R4Q2_A0A0D9R4Q2_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G7PSN5_G7PSN5_MACFA_9541 and tr_A0A2K5NX75_A0A2K5NX75_CERAT_9531 are exactly identical! WARNING: Sequences tr_G7PSN5_G7PSN5_MACFA_9541 and tr_A0A2K6CQU2_A0A2K6CQU2_MACNE_9545 are exactly identical! WARNING: Sequences tr_G7PSN5_G7PSN5_MACFA_9541 and tr_A0A2K5XCP5_A0A2K5XCP5_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A140T848_A0A140T848_BOVIN_9913 and sp_Q58DL5_BCAR3_BOVIN_9913 are exactly identical! WARNING: Sequences tr_U3J0M8_U3J0M8_ANAPL_8839 and tr_A0A2I0MFT0_A0A2I0MFT0_COLLI_8932 are exactly identical! WARNING: Sequences tr_A0A087XUA2_A0A087XUA2_POEFO_48698 and tr_A0A087XUH7_A0A087XUH7_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A096MND1_A0A096MND1_PAPAN_9555 and tr_A0A2K6D5W9_A0A2K6D5W9_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A151M500_A0A151M500_ALLMI_8496 and tr_A0A3Q0GDL3_A0A3Q0GDL3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151M9H2_A0A151M9H2_ALLMI_8496 and tr_A0A1U7S4I0_A0A1U7S4I0_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151PI67_A0A151PI67_ALLMI_8496 and tr_A0A3Q0GM37_A0A3Q0GM37_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091F0Z1_A0A091F0Z1_CORBR_85066 and tr_A0A093S7K6_A0A093S7K6_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A091FU23_A0A091FU23_CORBR_85066 and tr_A0A093SPN4_A0A093SPN4_9PASS_328815 are exactly identical! WARNING: Sequences tr_A0A0M8ZR21_A0A0M8ZR21_9HYME_166423 and tr_A0A154PM96_A0A154PM96_9HYME_178035 are exactly identical! WARNING: Sequences tr_A0A091VCB2_A0A091VCB2_NIPNI_128390 and tr_A0A087QMM9_A0A087QMM9_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A0V0S9I8_A0A0V0S9I8_9BILA_6336 and tr_A0A0V1CW81_A0A0V1CW81_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0S9I8_A0A0V0S9I8_9BILA_6336 and tr_A0A0V0XA45_A0A0V0XA45_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0S9I8_A0A0V0S9I8_9BILA_6336 and tr_A0A0V0V2B3_A0A0V0V2B3_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0S9I8_A0A0V0S9I8_9BILA_6336 and tr_A0A0V1LLY7_A0A0V1LLY7_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0S9I8_A0A0V0S9I8_9BILA_6336 and tr_A0A0V0ZUL5_A0A0V0ZUL5_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0S9I8_A0A0V0S9I8_9BILA_6336 and tr_A0A0V1PIZ3_A0A0V1PIZ3_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0S9I8_A0A0V0S9I8_9BILA_6336 and tr_A0A0V0U2G9_A0A0V0U2G9_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0SKB5_A0A0V0SKB5_9BILA_6336 and tr_A0A0V1D9M8_A0A0V1D9M8_TRIBR_45882 are exactly identical! WARNING: Sequences tr_A0A0V0SKB5_A0A0V0SKB5_9BILA_6336 and tr_A0A0V0WCB6_A0A0V0WCB6_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V0SKB5_A0A0V0SKB5_9BILA_6336 and tr_A0A0V0UTI5_A0A0V0UTI5_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V0SKB5_A0A0V0SKB5_9BILA_6336 and tr_A0A0V1KZ99_A0A0V1KZ99_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V0SKB5_A0A0V0SKB5_9BILA_6336 and tr_A0A0V0ZI64_A0A0V0ZI64_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V0SKB5_A0A0V0SKB5_9BILA_6336 and tr_A0A0V1P7Q6_A0A0V1P7Q6_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V0SKB5_A0A0V0SKB5_9BILA_6336 and tr_A0A0V0UAN6_A0A0V0UAN6_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1DDQ9_A0A0V1DDQ9_TRIBR_45882 and tr_A0A0V0X7Q2_A0A0V0X7Q2_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1DDQ9_A0A0V1DDQ9_TRIBR_45882 and tr_A0A0V0UXM8_A0A0V0UXM8_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1DDQ9_A0A0V1DDQ9_TRIBR_45882 and tr_A0A0V1L531_A0A0V1L531_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1DDQ9_A0A0V1DDQ9_TRIBR_45882 and tr_A0A0V1A9K6_A0A0V1A9K6_9BILA_990121 are exactly identical! WARNING: Sequences tr_A0A0V1DDQ9_A0A0V1DDQ9_TRIBR_45882 and tr_A0A0V1NV90_A0A0V1NV90_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1DDQ9_A0A0V1DDQ9_TRIBR_45882 and tr_A0A0V0U1N7_A0A0V0U1N7_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V0YC46_A0A0V0YC46_TRIPS_6337 and tr_A0A0V1MVJ4_A0A0V1MVJ4_9BILA_268474 are exactly identical! WARNING: Sequences tr_A0A0V0YC46_A0A0V0YC46_TRIPS_6337 and tr_A0A0V1I330_A0A0V1I330_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V0YC46_A0A0V0YC46_TRIPS_6337 and tr_A0A0V1I3D1_A0A0V1I3D1_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V1IGX9_A0A0V1IGX9_TRIPS_6337 and tr_A0A0V1HNC2_A0A0V1HNC2_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0V1N6H3_A0A0V1N6H3_9BILA_268474 and tr_A0A0V1HH13_A0A0V1HH13_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A151X9V3_A0A151X9V3_9HYME_64791 and tr_A0A195FUG9_A0A195FUG9_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A1S3MU88_A0A1S3MU88_SALSA_8030 and tr_A0A060YVP2_A0A060YVP2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MU88_A0A1S3MU88_SALSA_8030 and tr_A0A060Z8D1_A0A060Z8D1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3PC31_A0A1S3PC31_SALSA_8030 and tr_A0A060YP78_A0A060YP78_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1L8GGF2_A0A1L8GGF2_XENLA_8355 and tr_A0A1L8GMU5_A0A1L8GMU5_XENLA_8355 are exactly identical! WARNING: Sequences tr_A0A226N254_A0A226N254_CALSU_9009 and tr_A0A226NRX7_A0A226NRX7_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2D0Q463_A0A2D0Q463_ICTPU_7998 and tr_A0A2D0Q6W4_A0A2D0Q6W4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QGI3_A0A2D0QGI3_ICTPU_7998 and tr_A0A2D0QGJ6_A0A2D0QGJ6_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QYA5_A0A2D0QYA5_ICTPU_7998 and tr_A0A2D0QYJ4_A0A2D0QYJ4_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QYA6_A0A2D0QYA6_ICTPU_7998 and tr_A0A2D0QYB0_A0A2D0QYB0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0QYA6_A0A2D0QYA6_ICTPU_7998 and tr_A0A2D0QYJ8_A0A2D0QYJ8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0R0K4_A0A2D0R0K4_ICTPU_7998 and tr_A0A2D0R0U2_A0A2D0R0U2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0RTQ1_A0A2D0RTQ1_ICTPU_7998 and tr_W5UHW8_W5UHW8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2U4AV95_A0A2U4AV95_TURTR_9739 and tr_A0A2Y9PJL2_A0A2Y9PJL2_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4AV95_A0A2U4AV95_TURTR_9739 and tr_A0A383Z5R1_A0A383Z5R1_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2U4BFD6_A0A2U4BFD6_TURTR_9739 and tr_A0A2Y9M5N9_A0A2Y9M5N9_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BFD6_A0A2U4BFD6_TURTR_9739 and tr_A0A2Y9T8L6_A0A2Y9T8L6_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4BTC7_A0A2U4BTC7_TURTR_9739 and tr_A0A2Y9PPW9_A0A2Y9PPW9_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A2U4BTC7_A0A2U4BTC7_TURTR_9739 and tr_A0A2Y9STQ9_A0A2Y9STQ9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2U4BTC7_A0A2U4BTC7_TURTR_9739 and tr_A0A384AXI1_A0A384AXI1_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9E373_A0A2Y9E373_TRIMA_127582 and tr_A0A2Y9L741_A0A2Y9L741_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A0A2Y9PDY3_A0A2Y9PDY3_DELLE_9749 and tr_A0A2Y9SPZ9_A0A2Y9SPZ9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A2Y9PDY3_A0A2Y9PDY3_DELLE_9749 and tr_A0A384AGG1_A0A384AGG1_BALAS_310752 are exactly identical! WARNING: Sequences tr_A0A2Y9FRB9_A0A2Y9FRB9_PHYCD_9755 and tr_A0A383Z3H5_A0A383Z3H5_BALAS_310752 are exactly identical! WARNING: Duplicate sequences found: 219 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P98077/3_mltree/P98077.raxml.reduced.phy Alignment comprises 1 partitions and 107 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 107 / 107 Gaps: 6.57 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P98077/3_mltree/P98077.raxml.rba Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 999 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 107 / 8560 [00:00:00] Data distribution: max. searches per worker: 10 Starting ML tree search with 20 distinct starting trees [00:00:00 -184551.502782] Initial branch length optimization [00:00:03 -150171.592968] Model parameter optimization (eps = 10.000000) [00:00:31 -149845.169396] AUTODETECT spr round 1 (radius: 5) [00:02:31 -99237.651972] AUTODETECT spr round 2 (radius: 10) [00:04:47 -73314.189549] AUTODETECT spr round 3 (radius: 15) [00:07:11 -58554.188624] AUTODETECT spr round 4 (radius: 20) [00:09:48 -50642.950935] AUTODETECT spr round 5 (radius: 25) [00:12:55 -47191.727000] SPR radius for FAST iterations: 25 (autodetect) [00:12:55 -47191.727000] Model parameter optimization (eps = 3.000000) [00:13:14 -47112.566659] FAST spr round 1 (radius: 25) [00:15:32 -37154.097108] FAST spr round 2 (radius: 25) [00:17:30 -35999.797295] FAST spr round 3 (radius: 25) [00:19:15 -35791.829586] FAST spr round 4 (radius: 25) [00:20:52 -35783.967158] FAST spr round 5 (radius: 25) [00:22:25 -35782.977675] FAST spr round 6 (radius: 25) [00:23:55 -35782.977533] Model parameter optimization (eps = 1.000000) [00:24:04 -35780.719060] SLOW spr round 1 (radius: 5) [00:25:52 -35746.430971] SLOW spr round 2 (radius: 5) [00:27:40 -35744.766355] SLOW spr round 3 (radius: 5) [00:29:25 -35744.766175] SLOW spr round 4 (radius: 10) [00:31:14 -35742.512369] SLOW spr round 5 (radius: 5) [00:33:23 -35742.247348] SLOW spr round 6 (radius: 5) [00:35:20 -35742.247346] SLOW spr round 7 (radius: 10) [00:37:11 -35742.247346] SLOW spr round 8 (radius: 15) [00:39:55 -35742.048376] SLOW spr round 9 (radius: 5) [00:42:08 -35742.048376] SLOW spr round 10 (radius: 10) [00:44:10 -35742.048376] SLOW spr round 11 (radius: 15) [00:46:45 -35742.048376] SLOW spr round 12 (radius: 20) [00:50:47 -35742.048376] SLOW spr round 13 (radius: 25) [00:55:32 -35741.850165] SLOW spr round 14 (radius: 5) [00:57:49 -35741.849729] SLOW spr round 15 (radius: 10) [00:59:56 -35741.849728] SLOW spr round 16 (radius: 15) [01:02:31 -35741.849728] SLOW spr round 17 (radius: 20) [01:05:33] [worker #1] ML tree search #2, logLikelihood: -35737.084377 [01:06:32 -35741.849728] SLOW spr round 18 (radius: 25) [01:11:15 -35741.849728] Model parameter optimization (eps = 0.100000) [01:11:22] [worker #0] ML tree search #1, logLikelihood: -35741.676399 [01:11:23 -183041.419679] Initial branch length optimization [01:11:25 -149166.806118] Model parameter optimization (eps = 10.000000) [01:11:55 -148865.964419] AUTODETECT spr round 1 (radius: 5) [01:13:57 -98493.007228] AUTODETECT spr round 2 (radius: 10) [01:16:16 -70577.822121] AUTODETECT spr round 3 (radius: 15) [01:18:52 -50887.689093] AUTODETECT spr round 4 (radius: 20) [01:21:41 -43635.814479] AUTODETECT spr round 5 (radius: 25) [01:24:36 -42292.080995] SPR radius for FAST iterations: 25 (autodetect) [01:24:36 -42292.080995] Model parameter optimization (eps = 3.000000) [01:24:55 -42256.774502] FAST spr round 1 (radius: 25) [01:27:03 -36244.613385] FAST spr round 2 (radius: 25) [01:28:50 -35875.319535] FAST spr round 3 (radius: 25) [01:30:28 -35850.593677] FAST spr round 4 (radius: 25) [01:32:03 -35847.995145] FAST spr round 5 (radius: 25) [01:33:32 -35847.995073] Model parameter optimization (eps = 1.000000) [01:33:44 -35845.386999] SLOW spr round 1 (radius: 5) [01:35:31 -35841.106714] SLOW spr round 2 (radius: 5) [01:37:19 -35840.901914] SLOW spr round 3 (radius: 5) [01:39:07 -35840.901628] SLOW spr round 4 (radius: 10) [01:40:59 -35836.932359] SLOW spr round 5 (radius: 5) [01:43:11 -35836.667324] SLOW spr round 6 (radius: 5) [01:45:09 -35836.667290] SLOW spr round 7 (radius: 10) [01:47:02 -35836.667279] SLOW spr round 8 (radius: 15) [01:49:44 -35836.667277] SLOW spr round 9 (radius: 20) [01:53:29 -35836.509143] SLOW spr round 10 (radius: 5) [01:55:46 -35836.505845] SLOW spr round 11 (radius: 10) [01:57:51 -35836.503892] SLOW spr round 12 (radius: 15) [02:00:26 -35836.502603] SLOW spr round 13 (radius: 20) [02:04:14 -35836.501754] SLOW spr round 14 (radius: 25) [02:08:35 -35836.501197] Model parameter optimization (eps = 0.100000) [02:08:42] [worker #0] ML tree search #3, logLikelihood: -35836.469592 [02:08:43 -184661.325905] Initial branch length optimization [02:08:45 -149720.414418] Model parameter optimization (eps = 10.000000) [02:09:10 -149442.076628] AUTODETECT spr round 1 (radius: 5) [02:11:11 -95546.143948] AUTODETECT spr round 2 (radius: 10) [02:13:31 -67736.623591] AUTODETECT spr round 3 (radius: 15) [02:15:53 -53269.814758] AUTODETECT spr round 4 (radius: 20) [02:18:26 -47291.671195] AUTODETECT spr round 5 (radius: 25) [02:21:15 -44506.655383] SPR radius for FAST iterations: 25 (autodetect) [02:21:15 -44506.655383] Model parameter optimization (eps = 3.000000) [02:21:35 -44447.682482] FAST spr round 1 (radius: 25) [02:23:53 -36970.362902] FAST spr round 2 (radius: 25) [02:25:44 -35911.048154] FAST spr round 3 (radius: 25) [02:27:27 -35766.745697] FAST spr round 4 (radius: 25) [02:29:07 -35747.012510] FAST spr round 5 (radius: 25) [02:30:38 -35744.342431] FAST spr round 6 (radius: 25) [02:32:06 -35743.747029] FAST spr round 7 (radius: 25) [02:33:34 -35742.474917] FAST spr round 8 (radius: 25) [02:34:46] [worker #1] ML tree search #4, logLikelihood: -35726.174300 [02:35:02 -35741.810072] FAST spr round 9 (radius: 25) [02:36:29 -35741.809393] Model parameter optimization (eps = 1.000000) [02:36:42 -35738.904739] SLOW spr round 1 (radius: 5) [02:38:26 -35734.584325] SLOW spr round 2 (radius: 5) [02:40:12 -35732.823671] SLOW spr round 3 (radius: 5) [02:41:59 -35732.822143] SLOW spr round 4 (radius: 10) [02:43:49 -35732.562442] SLOW spr round 5 (radius: 5) [02:46:01 -35732.562279] SLOW spr round 6 (radius: 10) [02:48:04 -35732.562243] SLOW spr round 7 (radius: 15) [02:50:55 -35732.353396] SLOW spr round 8 (radius: 5) [02:53:13 -35732.353336] SLOW spr round 9 (radius: 10) [02:55:20 -35732.353335] SLOW spr round 10 (radius: 15) [02:58:09 -35732.353333] SLOW spr round 11 (radius: 20) [03:02:39 -35732.353332] SLOW spr round 12 (radius: 25) [03:07:51 -35732.353332] Model parameter optimization (eps = 0.100000) [03:07:56] [worker #0] ML tree search #5, logLikelihood: -35732.339353 [03:07:56 -185286.142371] Initial branch length optimization [03:07:59 -150753.975596] Model parameter optimization (eps = 10.000000) [03:08:29 -150491.051603] AUTODETECT spr round 1 (radius: 5) [03:10:33 -101542.250193] AUTODETECT spr round 2 (radius: 10) [03:12:54 -69101.165727] AUTODETECT spr round 3 (radius: 15) [03:15:17 -53711.609798] AUTODETECT spr round 4 (radius: 20) [03:17:50 -48755.082073] AUTODETECT spr round 5 (radius: 25) [03:20:52 -42785.045679] SPR radius for FAST iterations: 25 (autodetect) [03:20:52 -42785.045679] Model parameter optimization (eps = 3.000000) [03:21:15 -42748.649162] FAST spr round 1 (radius: 25) [03:23:29 -36355.278213] FAST spr round 2 (radius: 25) [03:25:19 -35797.881223] FAST spr round 3 (radius: 25) [03:27:00 -35770.549295] FAST spr round 4 (radius: 25) [03:28:38 -35768.499485] FAST spr round 5 (radius: 25) [03:30:11 -35768.498522] Model parameter optimization (eps = 1.000000) [03:30:23 -35766.867185] SLOW spr round 1 (radius: 5) [03:32:11 -35758.442107] SLOW spr round 2 (radius: 5) [03:34:02 -35757.601256] SLOW spr round 3 (radius: 5) [03:35:52 -35751.846879] SLOW spr round 4 (radius: 5) [03:37:43 -35749.861124] SLOW spr round 5 (radius: 5) [03:39:32 -35749.861070] SLOW spr round 6 (radius: 10) [03:41:24 -35747.496564] SLOW spr round 7 (radius: 5) [03:43:37 -35747.496457] SLOW spr round 8 (radius: 10) [03:45:38 -35747.496451] SLOW spr round 9 (radius: 15) [03:48:25 -35746.745453] SLOW spr round 10 (radius: 5) [03:50:42 -35744.543983] SLOW spr round 11 (radius: 5) [03:52:44 -35744.543855] SLOW spr round 12 (radius: 10) [03:54:41 -35744.543848] SLOW spr round 13 (radius: 15) [03:57:31 -35744.543846] SLOW spr round 14 (radius: 20) [04:01:43 -35742.742742] SLOW spr round 15 (radius: 5) [04:04:02 -35741.556296] SLOW spr round 16 (radius: 5) [04:05:20] [worker #1] ML tree search #6, logLikelihood: -35750.953873 [04:06:06 -35741.556242] SLOW spr round 17 (radius: 10) [04:08:03 -35741.556239] SLOW spr round 18 (radius: 15) [04:10:54 -35741.556238] SLOW spr round 19 (radius: 20) [04:15:11 -35741.556238] SLOW spr round 20 (radius: 25) [04:20:17 -35741.361363] SLOW spr round 21 (radius: 5) [04:22:35 -35741.359457] SLOW spr round 22 (radius: 10) [04:24:47 -35741.359382] SLOW spr round 23 (radius: 15) [04:27:33 -35741.359379] SLOW spr round 24 (radius: 20) [04:31:54 -35741.359378] SLOW spr round 25 (radius: 25) [04:37:02 -35741.359378] Model parameter optimization (eps = 0.100000) [04:37:10] [worker #0] ML tree search #7, logLikelihood: -35741.235958 [04:37:10 -184830.990914] Initial branch length optimization [04:37:13 -150100.093792] Model parameter optimization (eps = 10.000000) [04:37:41 -149787.795351] AUTODETECT spr round 1 (radius: 5) [04:39:46 -98521.432781] AUTODETECT spr round 2 (radius: 10) [04:42:10 -70475.249630] AUTODETECT spr round 3 (radius: 15) [04:44:52 -56080.081549] AUTODETECT spr round 4 (radius: 20) [04:47:45 -46264.313437] AUTODETECT spr round 5 (radius: 25) [04:51:05 -42753.482843] SPR radius for FAST iterations: 25 (autodetect) [04:51:05 -42753.482843] Model parameter optimization (eps = 3.000000) [04:51:27 -42708.330608] FAST spr round 1 (radius: 25) [04:53:44 -36169.859422] FAST spr round 2 (radius: 25) [04:55:33 -35809.724085] FAST spr round 3 (radius: 25) [04:57:16 -35780.806451] FAST spr round 4 (radius: 25) [04:58:54 -35769.812164] FAST spr round 5 (radius: 25) [05:00:27 -35769.811297] Model parameter optimization (eps = 1.000000) [05:00:43 -35759.593259] SLOW spr round 1 (radius: 5) [05:02:34 -35747.332274] SLOW spr round 2 (radius: 5) [05:04:25 -35740.268083] SLOW spr round 3 (radius: 5) [05:06:12 -35739.210739] SLOW spr round 4 (radius: 5) [05:07:58 -35739.210677] SLOW spr round 5 (radius: 10) [05:09:49 -35734.190132] SLOW spr round 6 (radius: 5) [05:12:00 -35733.922950] SLOW spr round 7 (radius: 5) [05:13:58 -35733.922875] SLOW spr round 8 (radius: 10) [05:15:49 -35733.922858] SLOW spr round 9 (radius: 15) [05:18:13] [worker #1] ML tree search #8, logLikelihood: -35737.155366 [05:18:35 -35733.576928] SLOW spr round 10 (radius: 5) [05:20:50 -35733.576564] SLOW spr round 11 (radius: 10) [05:22:53 -35733.576557] SLOW spr round 12 (radius: 15) [05:25:32 -35733.576557] SLOW spr round 13 (radius: 20) [05:29:45 -35733.576556] SLOW spr round 14 (radius: 25) [05:34:49 -35733.576556] Model parameter optimization (eps = 0.100000) [05:34:56] [worker #0] ML tree search #9, logLikelihood: -35733.521170 [05:34:56 -186030.887086] Initial branch length optimization [05:34:58 -149854.126880] Model parameter optimization (eps = 10.000000) [05:35:31 -149553.001176] AUTODETECT spr round 1 (radius: 5) [05:37:37 -99366.364974] AUTODETECT spr round 2 (radius: 10) [05:39:56 -71453.310002] AUTODETECT spr round 3 (radius: 15) [05:42:26 -57680.265179] AUTODETECT spr round 4 (radius: 20) [05:45:04 -52940.143679] AUTODETECT spr round 5 (radius: 25) [05:48:12 -49812.611887] SPR radius for FAST iterations: 25 (autodetect) [05:48:12 -49812.611887] Model parameter optimization (eps = 3.000000) [05:48:34 -49744.336786] FAST spr round 1 (radius: 25) [05:50:50 -40591.550242] FAST spr round 2 (radius: 25) [05:52:46 -37130.334354] FAST spr round 3 (radius: 25) [05:54:31 -35971.739666] FAST spr round 4 (radius: 25) [05:56:10 -35817.629223] FAST spr round 5 (radius: 25) [05:57:49 -35767.520697] FAST spr round 6 (radius: 25) [05:59:21 -35764.010205] FAST spr round 7 (radius: 25) [06:00:53 -35764.009946] Model parameter optimization (eps = 1.000000) [06:01:07 -35760.029725] SLOW spr round 1 (radius: 5) [06:02:54 -35751.420372] SLOW spr round 2 (radius: 5) [06:04:43 -35749.818133] SLOW spr round 3 (radius: 5) [06:06:33 -35749.817770] SLOW spr round 4 (radius: 10) [06:08:30 -35743.333542] SLOW spr round 5 (radius: 5) [06:10:44 -35741.340041] SLOW spr round 6 (radius: 5) [06:12:47 -35741.337612] SLOW spr round 7 (radius: 10) [06:14:44 -35737.993872] SLOW spr round 8 (radius: 5) [06:14:48] [worker #1] ML tree search #10, logLikelihood: -35737.917238 [06:16:59 -35735.849834] SLOW spr round 9 (radius: 5) [06:19:01 -35734.558653] SLOW spr round 10 (radius: 5) [06:20:53 -35734.558394] SLOW spr round 11 (radius: 10) [06:22:45 -35734.558144] SLOW spr round 12 (radius: 15) [06:25:51 -35734.558007] SLOW spr round 13 (radius: 20) [06:30:18 -35734.557905] SLOW spr round 14 (radius: 25) [06:35:28 -35734.378186] SLOW spr round 15 (radius: 5) [06:37:51 -35734.377921] SLOW spr round 16 (radius: 10) [06:40:03 -35734.377901] SLOW spr round 17 (radius: 15) [06:42:55 -35734.377892] SLOW spr round 18 (radius: 20) [06:47:28 -35734.377884] SLOW spr round 19 (radius: 25) [06:52:35 -35734.377878] Model parameter optimization (eps = 0.100000) [06:52:43] [worker #0] ML tree search #11, logLikelihood: -35733.849262 [06:52:43 -183434.076367] Initial branch length optimization [06:52:46 -149211.666928] Model parameter optimization (eps = 10.000000) [06:53:21 -148936.662907] AUTODETECT spr round 1 (radius: 5) [06:55:26 -99943.076411] AUTODETECT spr round 2 (radius: 10) [06:57:46 -70837.623374] AUTODETECT spr round 3 (radius: 15) [07:00:21 -56817.740888] AUTODETECT spr round 4 (radius: 20) [07:03:09 -50793.498257] AUTODETECT spr round 5 (radius: 25) [07:06:21 -45288.220657] SPR radius for FAST iterations: 25 (autodetect) [07:06:21 -45288.220657] Model parameter optimization (eps = 3.000000) [07:06:44 -45255.521500] FAST spr round 1 (radius: 25) [07:09:03 -37153.819053] FAST spr round 2 (radius: 25) [07:10:55 -36398.034985] FAST spr round 3 (radius: 25) [07:12:38 -35993.530364] FAST spr round 4 (radius: 25) [07:14:20 -35836.122377] FAST spr round 5 (radius: 25) [07:15:59 -35767.394463] FAST spr round 6 (radius: 25) [07:17:33 -35762.931643] FAST spr round 7 (radius: 25) [07:19:03 -35762.930253] Model parameter optimization (eps = 1.000000) [07:19:16 -35759.032295] SLOW spr round 1 (radius: 5) [07:21:04 -35753.398952] SLOW spr round 2 (radius: 5) [07:22:54 -35751.528291] SLOW spr round 3 (radius: 5) [07:24:44 -35746.749364] SLOW spr round 4 (radius: 5) [07:26:33 -35746.747397] SLOW spr round 5 (radius: 10) [07:28:24 -35746.747231] SLOW spr round 6 (radius: 15) [07:31:19] [worker #1] ML tree search #12, logLikelihood: -35732.281908 [07:31:25 -35746.530606] SLOW spr round 7 (radius: 5) [07:33:45 -35746.161600] SLOW spr round 8 (radius: 5) [07:35:47 -35746.161551] SLOW spr round 9 (radius: 10) [07:37:41 -35745.837482] SLOW spr round 10 (radius: 5) [07:39:52 -35745.837457] SLOW spr round 11 (radius: 10) [07:41:50 -35745.837456] SLOW spr round 12 (radius: 15) [07:44:37 -35745.088284] SLOW spr round 13 (radius: 5) [07:46:52 -35745.088271] SLOW spr round 14 (radius: 10) [07:48:57 -35742.890077] SLOW spr round 15 (radius: 5) [07:51:08 -35742.889841] SLOW spr round 16 (radius: 10) [07:53:07 -35742.889835] SLOW spr round 17 (radius: 15) [07:55:57 -35742.889835] SLOW spr round 18 (radius: 20) [08:00:15 -35742.889835] SLOW spr round 19 (radius: 25) [08:05:23 -35742.889834] Model parameter optimization (eps = 0.100000) [08:05:28] [worker #0] ML tree search #13, logLikelihood: -35742.827697 [08:05:28 -184332.462381] Initial branch length optimization [08:05:30 -149715.985589] Model parameter optimization (eps = 10.000000) [08:06:00 -149505.853561] AUTODETECT spr round 1 (radius: 5) [08:08:07 -99473.034906] AUTODETECT spr round 2 (radius: 10) [08:10:25 -76093.569673] AUTODETECT spr round 3 (radius: 15) [08:12:56 -61671.584853] AUTODETECT spr round 4 (radius: 20) [08:15:43 -51097.731275] AUTODETECT spr round 5 (radius: 25) [08:18:45 -46754.678078] SPR radius for FAST iterations: 25 (autodetect) [08:18:45 -46754.678078] Model parameter optimization (eps = 3.000000) [08:19:06 -46709.492735] FAST spr round 1 (radius: 25) [08:21:22 -37498.660118] FAST spr round 2 (radius: 25) [08:23:15 -36283.590310] FAST spr round 3 (radius: 25) [08:25:00 -35830.205633] FAST spr round 4 (radius: 25) [08:26:39 -35775.165347] FAST spr round 5 (radius: 25) [08:28:13 -35768.379009] FAST spr round 6 (radius: 25) [08:29:45 -35768.378823] Model parameter optimization (eps = 1.000000) [08:30:04 -35760.949583] SLOW spr round 1 (radius: 5) [08:31:53 -35749.755196] SLOW spr round 2 (radius: 5) [08:33:44 -35747.521233] SLOW spr round 3 (radius: 5) [08:35:32 -35747.256034] SLOW spr round 4 (radius: 5) [08:37:18 -35747.256020] SLOW spr round 5 (radius: 10) [08:39:13 -35743.057677] SLOW spr round 6 (radius: 5) [08:41:25 -35743.057545] SLOW spr round 7 (radius: 10) [08:43:30 -35742.921956] SLOW spr round 8 (radius: 5) [08:45:41 -35742.920906] SLOW spr round 9 (radius: 10) [08:47:41 -35742.920860] SLOW spr round 10 (radius: 15) [08:47:48] [worker #1] ML tree search #14, logLikelihood: -35739.013680 [08:50:34 -35737.190602] SLOW spr round 11 (radius: 5) [08:52:52 -35735.450607] SLOW spr round 12 (radius: 5) [08:54:54 -35735.016574] SLOW spr round 13 (radius: 5) [08:56:47 -35735.015821] SLOW spr round 14 (radius: 10) [08:58:41 -35734.256825] SLOW spr round 15 (radius: 5) [09:00:55 -35733.281418] SLOW spr round 16 (radius: 5) [09:02:55 -35733.280630] SLOW spr round 17 (radius: 10) [09:04:52 -35733.280529] SLOW spr round 18 (radius: 15) [09:07:55 -35733.280515] SLOW spr round 19 (radius: 20) [09:12:41 -35733.107187] SLOW spr round 20 (radius: 5) [09:15:00 -35733.107187] SLOW spr round 21 (radius: 10) [09:17:13 -35733.107186] SLOW spr round 22 (radius: 15) [09:20:06 -35733.107186] SLOW spr round 23 (radius: 20) [09:24:56 -35733.107186] SLOW spr round 24 (radius: 25) [09:30:27 -35733.107186] Model parameter optimization (eps = 0.100000) [09:30:38] [worker #0] ML tree search #15, logLikelihood: -35732.845709 [09:30:38 -185034.150311] Initial branch length optimization [09:30:41 -150062.498966] Model parameter optimization (eps = 10.000000) [09:31:17 -149804.101462] AUTODETECT spr round 1 (radius: 5) [09:33:22 -101016.412871] AUTODETECT spr round 2 (radius: 10) [09:35:41 -72135.529281] AUTODETECT spr round 3 (radius: 15) [09:38:13 -54472.345569] AUTODETECT spr round 4 (radius: 20) [09:40:53 -47242.616627] AUTODETECT spr round 5 (radius: 25) [09:44:22 -44796.859947] SPR radius for FAST iterations: 25 (autodetect) [09:44:22 -44796.859947] Model parameter optimization (eps = 3.000000) [09:44:44 -44743.642763] FAST spr round 1 (radius: 25) [09:47:04 -36682.823009] FAST spr round 2 (radius: 25) [09:48:56 -35893.926142] FAST spr round 3 (radius: 25) [09:50:39 -35789.339117] FAST spr round 4 (radius: 25) [09:52:15 -35774.192000] FAST spr round 5 (radius: 25) [09:53:44 -35774.191782] Model parameter optimization (eps = 1.000000) [09:53:57 -35771.867756] SLOW spr round 1 (radius: 5) [09:55:47 -35760.104282] SLOW spr round 2 (radius: 5) [09:57:38 -35757.456490] SLOW spr round 3 (radius: 5) [09:59:27 -35756.389804] SLOW spr round 4 (radius: 5) [10:01:13 -35756.389432] SLOW spr round 5 (radius: 10) [10:03:03 -35752.491781] SLOW spr round 6 (radius: 5) [10:05:16 -35751.587882] SLOW spr round 7 (radius: 5) [10:07:15 -35751.587701] SLOW spr round 8 (radius: 10) [10:09:07 -35751.587699] SLOW spr round 9 (radius: 15) [10:11:54 -35750.947175] SLOW spr round 10 (radius: 5) [10:14:09 -35750.947172] SLOW spr round 11 (radius: 10) [10:14:37] [worker #1] ML tree search #16, logLikelihood: -35724.435483 [10:16:13 -35750.947172] SLOW spr round 12 (radius: 15) [10:18:51 -35750.947172] SLOW spr round 13 (radius: 20) [10:22:55 -35750.947172] SLOW spr round 14 (radius: 25) [10:27:43 -35749.034536] SLOW spr round 15 (radius: 5) [10:30:02 -35749.034536] SLOW spr round 16 (radius: 10) [10:32:11 -35749.034536] SLOW spr round 17 (radius: 15) [10:34:48 -35749.034536] SLOW spr round 18 (radius: 20) [10:38:52 -35749.034535] SLOW spr round 19 (radius: 25) [10:43:40 -35749.034535] Model parameter optimization (eps = 0.100000) [10:43:45] [worker #0] ML tree search #17, logLikelihood: -35749.016513 [10:43:45 -184779.376570] Initial branch length optimization [10:43:47 -150321.227377] Model parameter optimization (eps = 10.000000) [10:44:15 -149968.588754] AUTODETECT spr round 1 (radius: 5) [10:46:21 -97540.810652] AUTODETECT spr round 2 (radius: 10) [10:48:37 -68690.269497] AUTODETECT spr round 3 (radius: 15) [10:51:00 -57344.716802] AUTODETECT spr round 4 (radius: 20) [10:53:34 -52047.531594] AUTODETECT spr round 5 (radius: 25) [10:57:04 -45368.239001] SPR radius for FAST iterations: 25 (autodetect) [10:57:04 -45368.239001] Model parameter optimization (eps = 3.000000) [10:57:21 -45309.632608] FAST spr round 1 (radius: 25) [10:59:43 -36687.930885] FAST spr round 2 (radius: 25) [11:01:42 -35831.704024] FAST spr round 3 (radius: 25) [11:03:31 -35782.066319] FAST spr round 4 (radius: 25) [11:05:08 -35782.043786] Model parameter optimization (eps = 1.000000) [11:05:24 -35777.994561] SLOW spr round 1 (radius: 5) [11:07:19 -35747.531514] SLOW spr round 2 (radius: 5) [11:09:11 -35745.662988] SLOW spr round 3 (radius: 5) [11:11:02 -35745.289834] SLOW spr round 4 (radius: 5) [11:12:54 -35744.361848] SLOW spr round 5 (radius: 5) [11:14:44 -35744.361547] SLOW spr round 6 (radius: 10) [11:16:36 -35743.960271] SLOW spr round 7 (radius: 5) [11:18:49 -35743.959669] SLOW spr round 8 (radius: 10) [11:20:50 -35743.959520] SLOW spr round 9 (radius: 15) [11:23:34 -35743.959482] SLOW spr round 10 (radius: 20) [11:27:47 -35743.959467] SLOW spr round 11 (radius: 25) [11:32:50 -35743.959464] Model parameter optimization (eps = 0.100000) [11:33:00] [worker #0] ML tree search #19, logLikelihood: -35743.525510 [11:39:52] [worker #1] ML tree search #18, logLikelihood: -35729.052696 [13:16:51] [worker #1] ML tree search #20, logLikelihood: -35730.356474 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.144386,0.498680) (0.153624,0.360755) (0.411705,0.801729) (0.290284,1.868860) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -35724.435483 AIC score: 75450.870966 / AICc score: 8087454.870966 / BIC score: 80799.201464 Free parameters (model + branch lengths): 2001 WARNING: Number of free parameters (K=2001) is larger than alignment size (n=107). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 1 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P98077/3_mltree/P98077.raxml.bestTreeCollapsed Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P98077/3_mltree/P98077.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P98077/3_mltree/P98077.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P98077/3_mltree/P98077.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P98077/3_mltree/P98077.raxml.log Analysis started: 20-Jul-2021 00:02:55 / finished: 20-Jul-2021 13:19:47 Elapsed time: 47811.528 seconds