RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, 40 cores, 376 GB RAM RAxML-NG was called at 08-Jul-2021 00:07:32 as follows: raxml-ng --msa /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P85298/2_msa/P85298_trimmed_msa.fasta --data-type AA --model LG4X --prefix /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P85298/3_mltree/P85298 --seed 2 --threads 2 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), PTHREADS (2 threads), thread pinning: OFF [00:00:00] Reading alignment from file: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P85298/2_msa/P85298_trimmed_msa.fasta [00:00:00] Loaded alignment with 995 taxa and 122 sites WARNING: Sequences tr_B4QSS8_B4QSS8_DROSI_7240 and sp_Q9VDS5_RG92B_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QSS8_B4QSS8_DROSI_7240 and tr_B4IHQ7_B4IHQ7_DROSE_7238 are exactly identical! WARNING: Sequences tr_A0A2R8Q349_A0A2R8Q349_DANRE_7955 and tr_A0A2R8QQA3_A0A2R8QQA3_DANRE_7955 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_G1N7N8_G1N7N8_MELGA_9103 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_A0A099ZHM8_A0A099ZHM8_TINGU_94827 are exactly identical! WARNING: Sequences tr_F1NE22_F1NE22_CHICK_9031 and tr_A0A226N1A6_A0A226N1A6_CALSU_9009 are exactly identical! WARNING: Sequences tr_R4GJE2_R4GJE2_CHICK_9031 and tr_G1N6K9_G1N6K9_MELGA_9103 are exactly identical! WARNING: Sequences tr_R4GJE2_R4GJE2_CHICK_9031 and tr_U3ILY3_U3ILY3_ANAPL_8839 are exactly identical! WARNING: Sequences tr_R4GJE2_R4GJE2_CHICK_9031 and tr_A0A093I6Z4_A0A093I6Z4_STRCA_441894 are exactly identical! WARNING: Sequences tr_R4GJE2_R4GJE2_CHICK_9031 and tr_A0A226PP67_A0A226PP67_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2R8W6I7_A0A2R8W6I7_MOUSE_10090 and sp_P55194_3BP1_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A0A2R8W6I7_A0A2R8W6I7_MOUSE_10090 and sp_D3ZFJ3_3BP1_RAT_10116 are exactly identical! WARNING: Sequences sp_Q6IFT4_RHG20_MOUSE_10090 and sp_Q6REY9_RHG20_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XST2_M3XST2_MUSPF_9669 and tr_A0A2Y9KHE4_A0A2Y9KHE4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XT71_M3XT71_MUSPF_9669 and tr_A0A2Y9K6G6_A0A2Y9K6G6_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XW68_M3XW68_MUSPF_9669 and tr_A0A2Y9KAR5_A0A2Y9KAR5_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YCL1_M3YCL1_MUSPF_9669 and tr_J9NSP3_J9NSP3_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3YCL1_M3YCL1_MUSPF_9669 and tr_G1MF78_G1MF78_AILME_9646 are exactly identical! WARNING: Sequences tr_M3YCL1_M3YCL1_MUSPF_9669 and tr_L5K9F4_L5K9F4_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3YCL1_M3YCL1_MUSPF_9669 and tr_A0A2I2V3S0_A0A2I2V3S0_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3YCL1_M3YCL1_MUSPF_9669 and tr_A0A2U3WIL2_A0A2U3WIL2_ODORO_9708 are exactly identical! WARNING: Sequences tr_M3YCL1_M3YCL1_MUSPF_9669 and tr_A0A2U3Y3J6_A0A2U3Y3J6_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3YCL1_M3YCL1_MUSPF_9669 and tr_A0A2Y9JCE3_A0A2Y9JCE3_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3YCL1_M3YCL1_MUSPF_9669 and tr_A0A384CIZ2_A0A384CIZ2_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_G3QTU7_G3QTU7_GORGO_9595 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_H2PDT8_H2PDT8_PONAB_9601 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_E2RFM4_E2RFM4_CANLF_9615 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_H2QPU1_H2QPU1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_I3LZ93_I3LZ93_ICTTR_43179 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and sp_Q8N264_RHG24_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_F6UV94_F6UV94_MACMU_9544 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_G5C949_G5C949_HETGA_10181 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_G1LA36_G1LA36_AILME_9646 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_L5KZI3_L5KZI3_PTEAL_9402 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_A0A337SUL6_A0A337SUL6_FELCA_9685 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_A0A096MUE0_A0A096MUE0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_A0A0D9QWF1_A0A0D9QWF1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_A0A1S2ZV67_A0A1S2ZV67_ERIEU_9365 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_A0A1U7TCF3_A0A1U7TCF3_TARSY_1868482 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_A0A2K5MWD6_A0A2K5MWD6_CERAT_9531 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_A0A2K6AR12_A0A2K6AR12_MACNE_9545 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_A0A2K5ZTC5_A0A2K5ZTC5_MANLE_9568 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_A0A2R9BLQ3_A0A2R9BLQ3_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_A0A2U3VBD0_A0A2U3VBD0_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_A0A2U3XE97_A0A2U3XE97_LEPWE_9713 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_A0A2Y9EC73_A0A2Y9EC73_TRIMA_127582 are exactly identical! WARNING: Sequences tr_G1RDK5_G1RDK5_NOMLE_61853 and tr_A0A384DBH2_A0A384DBH2_URSMA_29073 are exactly identical! WARNING: Sequences tr_A0A2I2ZPW0_A0A2I2ZPW0_GORGO_9595 and tr_H2NF84_H2NF84_PONAB_9601 are exactly identical! WARNING: Sequences tr_A0A2I2ZPW0_A0A2I2ZPW0_GORGO_9595 and tr_A0A2I3RL56_A0A2I3RL56_PANTR_9598 are exactly identical! WARNING: Sequences tr_A0A2I2ZPW0_A0A2I2ZPW0_GORGO_9595 and sp_Q9P2F6_RHG20_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A0A2I2ZPW0_A0A2I2ZPW0_GORGO_9595 and tr_A0A1D5QQF8_A0A1D5QQF8_MACMU_9544 are exactly identical! WARNING: Sequences tr_A0A2I2ZPW0_A0A2I2ZPW0_GORGO_9595 and tr_A0A2R8MTY4_A0A2R8MTY4_CALJA_9483 are exactly identical! WARNING: Sequences tr_A0A2I2ZPW0_A0A2I2ZPW0_GORGO_9595 and tr_G7PNR7_G7PNR7_MACFA_9541 are exactly identical! WARNING: Sequences tr_A0A2I2ZPW0_A0A2I2ZPW0_GORGO_9595 and tr_A0A096NCP5_A0A096NCP5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A0A2I2ZPW0_A0A2I2ZPW0_GORGO_9595 and tr_A0A0D9S2M7_A0A0D9S2M7_CHLSB_60711 are exactly identical! WARNING: Sequences tr_A0A2I2ZPW0_A0A2I2ZPW0_GORGO_9595 and tr_A0A2K5MRP3_A0A2K5MRP3_CERAT_9531 are exactly identical! WARNING: Sequences tr_A0A2I2ZPW0_A0A2I2ZPW0_GORGO_9595 and tr_A0A2K6DT65_A0A2K6DT65_MACNE_9545 are exactly identical! WARNING: Sequences tr_A0A2I2ZPW0_A0A2I2ZPW0_GORGO_9595 and tr_A0A2K6AB85_A0A2K6AB85_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A2I2ZPW0_A0A2I2ZPW0_GORGO_9595 and tr_A0A2R9BWH8_A0A2R9BWH8_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3QG80_G3QG80_GORGO_9595 and tr_H2Q1V6_H2Q1V6_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3QG80_G3QG80_GORGO_9595 and sp_Q7Z5H3_RHG22_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3QG80_G3QG80_GORGO_9595 and tr_F6ZKA6_F6ZKA6_MACMU_9544 are exactly identical! WARNING: Sequences tr_G3QG80_G3QG80_GORGO_9595 and tr_F6Z2W1_F6Z2W1_CALJA_9483 are exactly identical! WARNING: Sequences tr_G3QG80_G3QG80_GORGO_9595 and tr_A0A2I3N343_A0A2I3N343_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3QG80_G3QG80_GORGO_9595 and tr_A0A0D9RCQ1_A0A0D9RCQ1_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3QG80_G3QG80_GORGO_9595 and tr_A0A2K5MYE2_A0A2K5MYE2_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3QG80_G3QG80_GORGO_9595 and tr_A0A2K6DFB9_A0A2K6DFB9_MACNE_9545 are exactly identical! WARNING: Sequences tr_G3QG80_G3QG80_GORGO_9595 and tr_A0A2K5YTJ0_A0A2K5YTJ0_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3RR24_G3RR24_GORGO_9595 and tr_H2QPW1_H2QPW1_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RR24_G3RR24_GORGO_9595 and sp_O94988_FA13A_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RR24_G3RR24_GORGO_9595 and tr_A0A2R8Z6E9_A0A2R8Z6E9_PANPA_9597 are exactly identical! WARNING: Sequences tr_G3RT66_G3RT66_GORGO_9595 and tr_H2NDK7_H2NDK7_PONAB_9601 are exactly identical! WARNING: Sequences tr_G3RT66_G3RT66_GORGO_9595 and tr_H2Q3I0_H2Q3I0_PANTR_9598 are exactly identical! WARNING: Sequences tr_G3RT66_G3RT66_GORGO_9595 and sp_Q07960_RHG01_HUMAN_9606 are exactly identical! WARNING: Sequences tr_G3RT66_G3RT66_GORGO_9595 and tr_A0A096MXU4_A0A096MXU4_PAPAN_9555 are exactly identical! WARNING: Sequences tr_G3RT66_G3RT66_GORGO_9595 and tr_A0A0D9R051_A0A0D9R051_CHLSB_60711 are exactly identical! WARNING: Sequences tr_G3RT66_G3RT66_GORGO_9595 and tr_A0A2K5NY60_A0A2K5NY60_CERAT_9531 are exactly identical! WARNING: Sequences tr_G3RT66_G3RT66_GORGO_9595 and tr_A0A2K5YJ75_A0A2K5YJ75_MANLE_9568 are exactly identical! WARNING: Sequences tr_G3RT66_G3RT66_GORGO_9595 and tr_A0A2R8ZXZ2_A0A2R8ZXZ2_PANPA_9597 are exactly identical! WARNING: Sequences tr_G1N778_G1N778_MELGA_9103 and tr_A0A0Q3R6H7_A0A0Q3R6H7_AMAAE_12930 are exactly identical! WARNING: Sequences tr_A0A0R3P3H6_A0A0R3P3H6_DROPS_46245 and tr_B4GR62_B4GR62_DROPE_7234 are exactly identical! WARNING: Sequences tr_B5DPL4_B5DPL4_DROPS_46245 and tr_B4HBP4_B4HBP4_DROPE_7234 are exactly identical! WARNING: Sequences tr_Q294C7_Q294C7_DROPS_46245 and tr_B4GL97_B4GL97_DROPE_7234 are exactly identical! WARNING: Sequences tr_W5P0Y4_W5P0Y4_SHEEP_9940 and tr_F6UMK3_F6UMK3_CALJA_9483 are exactly identical! WARNING: Sequences tr_W5P0Y4_W5P0Y4_SHEEP_9940 and tr_F1MHI2_F1MHI2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_W5P0Y4_W5P0Y4_SHEEP_9940 and tr_A0A2U4AN26_A0A2U4AN26_TURTR_9739 are exactly identical! WARNING: Sequences tr_W5P0Y4_W5P0Y4_SHEEP_9940 and tr_A0A2Y9M8J6_A0A2Y9M8J6_DELLE_9749 are exactly identical! WARNING: Sequences tr_W5P0Y4_W5P0Y4_SHEEP_9940 and tr_A0A383ZQN9_A0A383ZQN9_BALAS_310752 are exactly identical! WARNING: Sequences tr_W5P2Y2_W5P2Y2_SHEEP_9940 and tr_Q08DB1_Q08DB1_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3ZQI5_M3ZQI5_XIPMA_8083 and tr_A0A2I4B2F9_A0A2I4B2F9_9TELE_52670 are exactly identical! WARNING: Sequences tr_M4A4X0_M4A4X0_XIPMA_8083 and tr_A0A096M228_A0A096M228_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A158ND88_A0A158ND88_ATTCE_12957 and tr_F4X764_F4X764_ACREC_103372 are exactly identical! WARNING: Sequences tr_A0A158ND88_A0A158ND88_ATTCE_12957 and tr_A0A151X0A8_A0A151X0A8_9HYME_64791 are exactly identical! WARNING: Sequences tr_A0A158ND88_A0A158ND88_ATTCE_12957 and tr_A0A195DJ22_A0A195DJ22_9HYME_471704 are exactly identical! WARNING: Sequences tr_A0A158ND88_A0A158ND88_ATTCE_12957 and tr_A0A195B186_A0A195B186_9HYME_520822 are exactly identical! WARNING: Sequences tr_A0A158ND88_A0A158ND88_ATTCE_12957 and tr_A0A195FIV7_A0A195FIV7_9HYME_34720 are exactly identical! WARNING: Sequences tr_A0A158NZ36_A0A158NZ36_ATTCE_12957 and tr_A0A195AYU4_A0A195AYU4_9HYME_520822 are exactly identical! WARNING: Sequences sp_Q6ZT62_BGIN_HUMAN_9606 and sp_Q9Y3L3_3BP1_HUMAN_9606 are exactly identical! WARNING: Sequences sp_Q6ZT62_BGIN_HUMAN_9606 and tr_F7HAB5_F7HAB5_MACMU_9544 are exactly identical! WARNING: Sequences sp_Q6ZT62_BGIN_HUMAN_9606 and tr_G7PFD6_G7PFD6_MACFA_9541 are exactly identical! WARNING: Sequences sp_Q6ZT62_BGIN_HUMAN_9606 and tr_A0A096NJX1_A0A096NJX1_PAPAN_9555 are exactly identical! WARNING: Sequences sp_Q6ZT62_BGIN_HUMAN_9606 and tr_A0A0D9R4N6_A0A0D9R4N6_CHLSB_60711 are exactly identical! WARNING: Sequences sp_Q6ZT62_BGIN_HUMAN_9606 and tr_A0A2K5NI89_A0A2K5NI89_CERAT_9531 are exactly identical! WARNING: Sequences sp_Q6ZT62_BGIN_HUMAN_9606 and tr_A0A2K6DEU6_A0A2K6DEU6_MACNE_9545 are exactly identical! WARNING: Sequences sp_Q6ZT62_BGIN_HUMAN_9606 and tr_A0A2K6ACK1_A0A2K6ACK1_MANLE_9568 are exactly identical! WARNING: Sequences sp_Q6ZT62_BGIN_HUMAN_9606 and tr_A0A2R9AIW8_A0A2R9AIW8_PANPA_9597 are exactly identical! WARNING: Sequences tr_A0A0H5S4P2_A0A0H5S4P2_BRUMA_6279 and tr_A0A0N4TVV2_A0A0N4TVV2_BRUPA_6280 are exactly identical! WARNING: Sequences tr_A0A0H5S4P2_A0A0H5S4P2_BRUMA_6279 and tr_A0A0R3R2V4_A0A0R3R2V4_9BILA_42155 are exactly identical! WARNING: Sequences tr_F6QXF1_F6QXF1_MACMU_9544 and tr_G7P5W9_G7P5W9_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6QXF1_F6QXF1_MACMU_9544 and tr_A0A096N0Q0_A0A096N0Q0_PAPAN_9555 are exactly identical! WARNING: Sequences tr_F6QXF1_F6QXF1_MACMU_9544 and tr_A0A0D9QW48_A0A0D9QW48_CHLSB_60711 are exactly identical! WARNING: Sequences tr_F6QXF1_F6QXF1_MACMU_9544 and tr_A0A2K5NDS4_A0A2K5NDS4_CERAT_9531 are exactly identical! WARNING: Sequences tr_F6QXF1_F6QXF1_MACMU_9544 and tr_A0A2K6CCU6_A0A2K6CCU6_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6T0E0_F6T0E0_MACMU_9544 and tr_G7PQA9_G7PQA9_MACFA_9541 are exactly identical! WARNING: Sequences tr_F6T0E0_F6T0E0_MACMU_9544 and tr_A0A2K6E3J3_A0A2K6E3J3_MACNE_9545 are exactly identical! WARNING: Sequences tr_H0YX25_H0YX25_TAEGU_59729 and tr_A0A218V2W7_A0A218V2W7_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZCU6_H0ZCU6_TAEGU_59729 and tr_U3JYF8_U3JYF8_FICAL_59894 are exactly identical! WARNING: Sequences tr_H0ZCU6_H0ZCU6_TAEGU_59729 and tr_U3J9Y9_U3J9Y9_ANAPL_8839 are exactly identical! WARNING: Sequences tr_H0ZCU6_H0ZCU6_TAEGU_59729 and tr_A0A091EC64_A0A091EC64_CORBR_85066 are exactly identical! WARNING: Sequences tr_H0ZCU6_H0ZCU6_TAEGU_59729 and tr_A0A091JDG5_A0A091JDG5_EGRGA_188379 are exactly identical! WARNING: Sequences tr_H0ZCU6_H0ZCU6_TAEGU_59729 and tr_A0A093QAC2_A0A093QAC2_9PASS_328815 are exactly identical! WARNING: Sequences tr_H0ZCU6_H0ZCU6_TAEGU_59729 and tr_A0A091VNM5_A0A091VNM5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_H0ZCU6_H0ZCU6_TAEGU_59729 and tr_A0A087QZ02_A0A087QZ02_APTFO_9233 are exactly identical! WARNING: Sequences tr_H0ZCU6_H0ZCU6_TAEGU_59729 and tr_A0A091V420_A0A091V420_OPIHO_30419 are exactly identical! WARNING: Sequences tr_H0ZCU6_H0ZCU6_TAEGU_59729 and tr_A0A091FKL0_A0A091FKL0_9AVES_55661 are exactly identical! WARNING: Sequences tr_H0ZCU6_H0ZCU6_TAEGU_59729 and tr_A0A0A0AT71_A0A0A0AT71_CHAVO_50402 are exactly identical! WARNING: Sequences tr_H0ZCU6_H0ZCU6_TAEGU_59729 and tr_A0A218UWJ5_A0A218UWJ5_9PASE_299123 are exactly identical! WARNING: Sequences tr_H0ZK09_H0ZK09_TAEGU_59729 and tr_A0A218V9F9_A0A218V9F9_9PASE_299123 are exactly identical! WARNING: Sequences tr_F7AFM8_F7AFM8_XENTR_8364 and tr_A0A1L8GTB8_A0A1L8GTB8_XENLA_8355 are exactly identical! WARNING: Sequences tr_F6TT67_F6TT67_CALJA_9483 and tr_A0A2K6BJU2_A0A2K6BJU2_MACNE_9545 are exactly identical! WARNING: Sequences tr_F6TT67_F6TT67_CALJA_9483 and tr_A0A2K5Z2P3_A0A2K5Z2P3_MANLE_9568 are exactly identical! WARNING: Sequences tr_A0A287BGM7_A0A287BGM7_PIG_9823 and tr_A0A2U4AJW0_A0A2U4AJW0_TURTR_9739 are exactly identical! WARNING: Sequences tr_A0A287BGM7_A0A287BGM7_PIG_9823 and tr_A0A2Y9MME4_A0A2Y9MME4_DELLE_9749 are exactly identical! WARNING: Sequences tr_A0A287BGM7_A0A287BGM7_PIG_9823 and tr_A0A2Y9SLD7_A0A2Y9SLD7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_A0A287BGM7_A0A287BGM7_PIG_9823 and tr_A0A383ZV53_A0A383ZV53_BALAS_310752 are exactly identical! WARNING: Sequences tr_E3LF87_E3LF87_CAERE_31234 and tr_A0A260YSE8_A0A260YSE8_9PELO_1503980 are exactly identical! WARNING: Sequences tr_E3LF89_E3LF89_CAERE_31234 and tr_A0A261BMX2_A0A261BMX2_9PELO_1503980 are exactly identical! WARNING: Sequences tr_E3LF89_E3LF89_CAERE_31234 and tr_A0A2G5V2T2_A0A2G5V2T2_9PELO_1611254 are exactly identical! WARNING: Sequences tr_D2H7I0_D2H7I0_AILME_9646 and tr_A0A384DEX2_A0A384DEX2_URSMA_29073 are exactly identical! WARNING: Sequences tr_G1LRB7_G1LRB7_AILME_9646 and tr_A0A2U3VZY2_A0A2U3VZY2_ODORO_9708 are exactly identical! WARNING: Sequences tr_G1LRB7_G1LRB7_AILME_9646 and tr_A0A2U3Y985_A0A2U3Y985_LEPWE_9713 are exactly identical! WARNING: Sequences tr_B3SBY9_B3SBY9_TRIAD_10228 and tr_A0A369RYF0_A0A369RYF0_9METZ_287889 are exactly identical! WARNING: Sequences tr_F1N458_F1N458_BOVIN_9913 and tr_A0A1S3WG52_A0A1S3WG52_ERIEU_9365 are exactly identical! WARNING: Sequences tr_L0PEA9_L0PEA9_PNEJ8_1209962 and tr_A0A0W4ZWG2_A0A0W4ZWG2_PNEJ7_1408657 are exactly identical! WARNING: Sequences tr_U3KEG0_U3KEG0_FICAL_59894 and tr_A0A218UZ13_A0A218UZ13_9PASE_299123 are exactly identical! WARNING: Sequences tr_U3IEY8_U3IEY8_ANAPL_8839 and tr_A0A091WYD9_A0A091WYD9_NIPNI_128390 are exactly identical! WARNING: Sequences tr_U3IEY8_U3IEY8_ANAPL_8839 and tr_A0A087R3W6_A0A087R3W6_APTFO_9233 are exactly identical! WARNING: Sequences tr_U3IEY8_U3IEY8_ANAPL_8839 and tr_A0A091WAQ7_A0A091WAQ7_OPIHO_30419 are exactly identical! WARNING: Sequences tr_V2WLZ3_V2WLZ3_MONRO_1381753 and tr_A0A0W0G547_A0A0W0G547_9AGAR_221103 are exactly identical! WARNING: Sequences tr_V2XPN8_V2XPN8_MONRO_1381753 and tr_A0A0W0EV24_A0A0W0EV24_9AGAR_221103 are exactly identical! WARNING: Sequences tr_A0A087YCU3_A0A087YCU3_POEFO_48698 and tr_A0A087YCV3_A0A087YCV3_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A0A1NKA8_A0A0A1NKA8_9FUNG_58291 and tr_A0A367JC03_A0A367JC03_9FUNG_86630 are exactly identical! WARNING: Sequences tr_A0A151MKW9_A0A151MKW9_ALLMI_8496 and tr_A0A3Q0GYH3_A0A3Q0GYH3_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NHT6_A0A151NHT6_ALLMI_8496 and tr_A0A1U7RME2_A0A1U7RME2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151NW08_A0A151NW08_ALLMI_8496 and tr_A0A1U7S806_A0A1U7S806_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A151P5H1_A0A151P5H1_ALLMI_8496 and tr_A0A3Q0FMK9_A0A3Q0FMK9_ALLSI_38654 are exactly identical! WARNING: Sequences tr_A0A091F7U1_A0A091F7U1_CORBR_85066 and tr_A0A091IV85_A0A091IV85_EGRGA_188379 are exactly identical! WARNING: Sequences tr_A0A091F7U1_A0A091F7U1_CORBR_85066 and tr_A0A087QQY6_A0A087QQY6_APTFO_9233 are exactly identical! WARNING: Sequences tr_A0A091F7U1_A0A091F7U1_CORBR_85066 and tr_A0A1V4JT24_A0A1V4JT24_PATFA_372326 are exactly identical! WARNING: Sequences tr_A0A194QXB9_A0A194QXB9_PAPMA_76193 and tr_A0A194QB73_A0A194QB73_PAPXU_66420 are exactly identical! WARNING: Sequences tr_A0A091X5Z2_A0A091X5Z2_NIPNI_128390 and tr_A0A091WDR2_A0A091WDR2_OPIHO_30419 are exactly identical! WARNING: Sequences tr_A0A0V1DBR9_A0A0V1DBR9_TRIBR_45882 and tr_A0A0V0X6B8_A0A0V0X6B8_9BILA_92179 are exactly identical! WARNING: Sequences tr_A0A0V1DBR9_A0A0V1DBR9_TRIBR_45882 and tr_A0A0V0VJ95_A0A0V0VJ95_9BILA_181606 are exactly identical! WARNING: Sequences tr_A0A0V1DBR9_A0A0V1DBR9_TRIBR_45882 and tr_A0A0V1L705_A0A0V1L705_9BILA_6335 are exactly identical! WARNING: Sequences tr_A0A0V1DBR9_A0A0V1DBR9_TRIBR_45882 and tr_A0A0V1P8X9_A0A0V1P8X9_9BILA_92180 are exactly identical! WARNING: Sequences tr_A0A0V1DBR9_A0A0V1DBR9_TRIBR_45882 and tr_A0A0V0TZE0_A0A0V0TZE0_9BILA_144512 are exactly identical! WARNING: Sequences tr_A0A0V1MVR1_A0A0V1MVR1_9BILA_268474 and tr_A0A0V1HAA8_A0A0V1HAA8_9BILA_268475 are exactly identical! WARNING: Sequences tr_A0A0P1B9Q5_A0A0P1B9Q5_9BASI_401625 and tr_A0A316VW51_A0A316VW51_9BASI_1522189 are exactly identical! WARNING: Sequences tr_A0A164XL00_A0A164XL00_9HOMO_1314777 and tr_A0A166JC31_A0A166JC31_9HOMO_1314776 are exactly identical! WARNING: Sequences tr_A0A1S3SHF2_A0A1S3SHF2_SALSA_8030 and tr_A0A060YMF0_A0A060YMF0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A226NEI8_A0A226NEI8_CALSU_9009 and tr_A0A226PVG5_A0A226PVG5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A2H3F284_A0A2H3F284_9HELO_946125 and tr_A0A2H3G1W0_A0A2H3G1W0_9HELO_946125 are exactly identical! WARNING: Sequences tr_A0A2D0QP00_A0A2D0QP00_ICTPU_7998 and tr_A0A2D0QPG1_A0A2D0QPG1_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S984_A0A2D0S984_ICTPU_7998 and tr_A0A2D0SA22_A0A2D0SA22_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0S984_A0A2D0S984_ICTPU_7998 and tr_A0A2D0SAM5_A0A2D0SAM5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0SY06_A0A2D0SY06_ICTPU_7998 and tr_A0A2D0SYE9_A0A2D0SYE9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T046_A0A2D0T046_ICTPU_7998 and tr_A0A2D0T0I2_A0A2D0T0I2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T046_A0A2D0T046_ICTPU_7998 and tr_W5UR97_W5UR97_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T2F5_A0A2D0T2F5_ICTPU_7998 and tr_A0A2D0T2I7_A0A2D0T2I7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T2F5_A0A2D0T2F5_ICTPU_7998 and tr_A0A2D0T2R8_A0A2D0T2R8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T2F5_A0A2D0T2F5_ICTPU_7998 and tr_A0A2D0T2U2_A0A2D0T2U2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T2F5_A0A2D0T2F5_ICTPU_7998 and tr_A0A2D0T3E0_A0A2D0T3E0_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2D0T542_A0A2D0T542_ICTPU_7998 and tr_A0A2D0T5C8_A0A2D0T5C8_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A2I1GHE7_A0A2I1GHE7_9GLOM_588596 and tr_A0A2H5SAX5_A0A2H5SAX5_RHIID_747089 are exactly identical! WARNING: Sequences tr_A0A2U3UYX6_A0A2U3UYX6_TURTR_9739 and tr_A0A2Y9M287_A0A2Y9M287_DELLE_9749 are exactly identical! WARNING: Duplicate sequences found: 185 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P85298/3_mltree/P85298.raxml.reduced.phy Alignment comprises 1 partitions and 122 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 122 / 122 Gaps: 2.72 % Invariant sites: 0.00 % NOTE: Binary MSA file created: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P85298/3_mltree/P85298.raxml.rba Parallelization scheme autoconfig: 2 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 995 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 122 / 9760 [00:00:00] Data distribution: max. searches per worker: 10 Starting ML tree search with 20 distinct starting trees [00:00:00 -219564.281892] Initial branch length optimization [00:00:03 -180623.045644] Model parameter optimization (eps = 10.000000) [00:00:29 -180031.761682] AUTODETECT spr round 1 (radius: 5) [00:02:27 -133377.027523] AUTODETECT spr round 2 (radius: 10) [00:04:37 -102010.587328] AUTODETECT spr round 3 (radius: 15) [00:06:54 -81099.355485] AUTODETECT spr round 4 (radius: 20) [00:09:20 -70790.513406] AUTODETECT spr round 5 (radius: 25) [00:12:14 -65708.066024] SPR radius for FAST iterations: 25 (autodetect) [00:12:14 -65708.066024] Model parameter optimization (eps = 3.000000) [00:12:33 -65676.674535] FAST spr round 1 (radius: 25) [00:14:42 -54701.627958] FAST spr round 2 (radius: 25) [00:16:23 -54266.294011] FAST spr round 3 (radius: 25) [00:17:58 -53998.233185] FAST spr round 4 (radius: 25) [00:19:24 -53995.923260] FAST spr round 5 (radius: 25) [00:20:47 -53995.627144] FAST spr round 6 (radius: 25) [00:22:08 -53995.627108] Model parameter optimization (eps = 1.000000) [00:22:19 -53988.821873] SLOW spr round 1 (radius: 5) [00:24:01 -53967.328793] SLOW spr round 2 (radius: 5) [00:25:43 -53964.233653] SLOW spr round 3 (radius: 5) [00:27:23 -53960.815454] SLOW spr round 4 (radius: 5) [00:29:01 -53960.814961] SLOW spr round 5 (radius: 10) [00:30:43 -53959.236418] SLOW spr round 6 (radius: 5) [00:32:45 -53956.797887] SLOW spr round 7 (radius: 5) [00:34:36 -53954.981502] SLOW spr round 8 (radius: 5) [00:36:19 -53954.981487] SLOW spr round 9 (radius: 10) [00:38:01 -53954.981487] SLOW spr round 10 (radius: 15) [00:40:35 -53954.981487] SLOW spr round 11 (radius: 20) [00:44:15 -53954.365305] SLOW spr round 12 (radius: 5) [00:46:24 -53954.365305] SLOW spr round 13 (radius: 10) [00:48:23 -53954.365305] SLOW spr round 14 (radius: 15) [00:50:46 -53954.365305] SLOW spr round 15 (radius: 20) [00:54:38 -53954.365305] SLOW spr round 16 (radius: 25) [00:59:22 -53954.365305] Model parameter optimization (eps = 0.100000) [00:59:29] [worker #0] ML tree search #1, logLikelihood: -53954.254787 [00:59:29 -219841.499681] Initial branch length optimization [00:59:32 -181673.406778] Model parameter optimization (eps = 10.000000) [01:00:15 -180962.926526] AUTODETECT spr round 1 (radius: 5) [01:02:15 -131447.931219] AUTODETECT spr round 2 (radius: 10) [01:04:26 -98496.910470] AUTODETECT spr round 3 (radius: 15) [01:06:50 -85272.103563] AUTODETECT spr round 4 (radius: 20) [01:07:13] [worker #1] ML tree search #2, logLikelihood: -53969.777893 [01:09:20 -76704.178853] AUTODETECT spr round 5 (radius: 25) [01:12:31 -74515.012703] SPR radius for FAST iterations: 25 (autodetect) [01:12:31 -74515.012703] Model parameter optimization (eps = 3.000000) [01:12:49 -74491.745386] FAST spr round 1 (radius: 25) [01:15:16 -56111.046320] FAST spr round 2 (radius: 25) [01:17:06 -54218.859563] FAST spr round 3 (radius: 25) [01:18:44 -54065.190450] FAST spr round 4 (radius: 25) [01:20:18 -54027.438963] FAST spr round 5 (radius: 25) [01:21:45 -54022.856744] FAST spr round 6 (radius: 25) [01:23:08 -54022.856702] Model parameter optimization (eps = 1.000000) [01:23:19 -54014.595954] SLOW spr round 1 (radius: 5) [01:25:02 -53996.041205] SLOW spr round 2 (radius: 5) [01:26:46 -53977.158883] SLOW spr round 3 (radius: 5) [01:28:28 -53976.505295] SLOW spr round 4 (radius: 5) [01:30:08 -53976.504892] SLOW spr round 5 (radius: 10) [01:31:53 -53973.910506] SLOW spr round 6 (radius: 5) [01:33:55 -53973.835497] SLOW spr round 7 (radius: 10) [01:35:49 -53973.835391] SLOW spr round 8 (radius: 15) [01:38:14 -53973.119791] SLOW spr round 9 (radius: 5) [01:40:21 -53973.119777] SLOW spr round 10 (radius: 10) [01:42:19 -53973.119775] SLOW spr round 11 (radius: 15) [01:44:41 -53973.119773] SLOW spr round 12 (radius: 20) [01:48:19 -53973.037756] SLOW spr round 13 (radius: 25) [01:52:39 -53973.037754] Model parameter optimization (eps = 0.100000) [01:52:46] [worker #0] ML tree search #3, logLikelihood: -53972.775368 [01:52:46 -219571.665133] Initial branch length optimization [01:52:50 -182271.898174] Model parameter optimization (eps = 10.000000) [01:53:45 -181631.423358] AUTODETECT spr round 1 (radius: 5) [01:55:44 -132346.344291] AUTODETECT spr round 2 (radius: 10) [01:57:55 -101094.564533] AUTODETECT spr round 3 (radius: 15) [02:00:20 -84563.407983] AUTODETECT spr round 4 (radius: 20) [02:02:56 -76333.029224] AUTODETECT spr round 5 (radius: 25) [02:05:33] [worker #1] ML tree search #4, logLikelihood: -53951.608007 [02:06:12 -73191.705925] SPR radius for FAST iterations: 25 (autodetect) [02:06:12 -73191.705925] Model parameter optimization (eps = 3.000000) [02:06:27 -73159.229659] FAST spr round 1 (radius: 25) [02:08:46 -56766.534325] FAST spr round 2 (radius: 25) [02:10:34 -54379.985199] FAST spr round 3 (radius: 25) [02:12:08 -54015.737423] FAST spr round 4 (radius: 25) [02:13:39 -53994.332104] FAST spr round 5 (radius: 25) [02:15:05 -53985.766057] FAST spr round 6 (radius: 25) [02:16:29 -53980.900419] FAST spr round 7 (radius: 25) [02:17:50 -53980.899978] Model parameter optimization (eps = 1.000000) [02:18:02 -53975.430977] SLOW spr round 1 (radius: 5) [02:19:45 -53966.999180] SLOW spr round 2 (radius: 5) [02:21:27 -53964.807076] SLOW spr round 3 (radius: 5) [02:23:05 -53964.806264] SLOW spr round 4 (radius: 10) [02:24:49 -53958.694759] SLOW spr round 5 (radius: 5) [02:26:52 -53957.665001] SLOW spr round 6 (radius: 5) [02:28:43 -53957.663178] SLOW spr round 7 (radius: 10) [02:30:29 -53955.739122] SLOW spr round 8 (radius: 5) [02:32:30 -53955.738380] SLOW spr round 9 (radius: 10) [02:34:21 -53955.737934] SLOW spr round 10 (radius: 15) [02:36:44 -53955.737538] SLOW spr round 11 (radius: 20) [02:40:14 -53955.737184] SLOW spr round 12 (radius: 25) [02:44:17 -53955.467985] SLOW spr round 13 (radius: 5) [02:46:28 -53955.467696] SLOW spr round 14 (radius: 10) [02:48:30 -53955.467433] SLOW spr round 15 (radius: 15) [02:50:50 -53955.467194] SLOW spr round 16 (radius: 20) [02:54:14 -53955.466974] SLOW spr round 17 (radius: 25) [02:57:18] [worker #1] ML tree search #6, logLikelihood: -53952.407514 [02:58:09 -53955.466773] Model parameter optimization (eps = 0.100000) [02:58:15] [worker #0] ML tree search #5, logLikelihood: -53955.403117 [02:58:16 -219957.581547] Initial branch length optimization [02:58:19 -181835.595071] Model parameter optimization (eps = 10.000000) [02:58:48 -181298.641158] AUTODETECT spr round 1 (radius: 5) [03:00:45 -129743.497586] AUTODETECT spr round 2 (radius: 10) [03:02:52 -98818.678311] AUTODETECT spr round 3 (radius: 15) [03:05:09 -79708.610240] AUTODETECT spr round 4 (radius: 20) [03:07:33 -69156.856690] AUTODETECT spr round 5 (radius: 25) [03:10:14 -65143.975171] SPR radius for FAST iterations: 25 (autodetect) [03:10:14 -65143.975171] Model parameter optimization (eps = 3.000000) [03:10:30 -65099.948277] FAST spr round 1 (radius: 25) [03:12:43 -55722.038622] FAST spr round 2 (radius: 25) [03:14:33 -54351.602620] FAST spr round 3 (radius: 25) [03:16:11 -54052.759595] FAST spr round 4 (radius: 25) [03:17:44 -54033.137050] FAST spr round 5 (radius: 25) [03:19:08 -54022.692887] FAST spr round 6 (radius: 25) [03:20:31 -54018.556714] FAST spr round 7 (radius: 25) [03:21:52 -54016.907325] FAST spr round 8 (radius: 25) [03:23:13 -54016.906621] Model parameter optimization (eps = 1.000000) [03:23:25 -54012.558402] SLOW spr round 1 (radius: 5) [03:25:08 -53986.163143] SLOW spr round 2 (radius: 5) [03:26:50 -53978.133901] SLOW spr round 3 (radius: 5) [03:28:32 -53973.965364] SLOW spr round 4 (radius: 5) [03:30:10 -53973.965353] SLOW spr round 5 (radius: 10) [03:31:55 -53964.901614] SLOW spr round 6 (radius: 5) [03:34:01 -53960.855325] SLOW spr round 7 (radius: 5) [03:35:51 -53960.839798] SLOW spr round 8 (radius: 10) [03:37:36 -53960.839192] SLOW spr round 9 (radius: 15) [03:39:59 -53959.971663] SLOW spr round 10 (radius: 5) [03:42:05 -53958.915699] SLOW spr round 11 (radius: 5) [03:43:57 -53958.915121] SLOW spr round 12 (radius: 10) [03:45:43 -53958.914568] SLOW spr round 13 (radius: 15) [03:48:04 -53958.914027] SLOW spr round 14 (radius: 20) [03:51:15 -53958.913493] SLOW spr round 15 (radius: 25) [03:55:04 -53958.644271] SLOW spr round 16 (radius: 5) [03:57:14 -53958.643743] SLOW spr round 17 (radius: 10) [03:59:14 -53958.643216] SLOW spr round 18 (radius: 15) [04:01:29 -53958.642691] SLOW spr round 19 (radius: 20) [04:04:38 -53958.642167] SLOW spr round 20 (radius: 25) [04:08:19 -53958.641645] Model parameter optimization (eps = 0.100000) [04:08:28] [worker #0] ML tree search #7, logLikelihood: -53958.490851 [04:08:28 -218698.954861] Initial branch length optimization [04:08:31 -180794.012401] Model parameter optimization (eps = 10.000000) [04:08:56 -180253.795235] AUTODETECT spr round 1 (radius: 5) [04:10:52 -132771.642281] AUTODETECT spr round 2 (radius: 10) [04:13:02 -103220.957075] AUTODETECT spr round 3 (radius: 15) [04:15:09] [worker #1] ML tree search #8, logLikelihood: -53947.711372 [04:15:20 -89660.683653] AUTODETECT spr round 4 (radius: 20) [04:17:48 -81654.249116] AUTODETECT spr round 5 (radius: 25) [04:20:33 -71636.068646] SPR radius for FAST iterations: 25 (autodetect) [04:20:33 -71636.068646] Model parameter optimization (eps = 3.000000) [04:20:50 -71606.169700] FAST spr round 1 (radius: 25) [04:23:15 -56091.438741] FAST spr round 2 (radius: 25) [04:25:02 -54155.568229] FAST spr round 3 (radius: 25) [04:26:37 -54061.486554] FAST spr round 4 (radius: 25) [04:28:09 -54049.790331] FAST spr round 5 (radius: 25) [04:29:35 -54043.034913] FAST spr round 6 (radius: 25) [04:30:57 -54041.894631] FAST spr round 7 (radius: 25) [04:32:19 -54041.894587] Model parameter optimization (eps = 1.000000) [04:32:29 -54035.969750] SLOW spr round 1 (radius: 5) [04:34:12 -54022.589940] SLOW spr round 2 (radius: 5) [04:35:52 -54022.400132] SLOW spr round 3 (radius: 5) [04:37:33 -54022.270267] SLOW spr round 4 (radius: 5) [04:39:12 -54022.269629] SLOW spr round 5 (radius: 10) [04:40:56 -54017.174570] SLOW spr round 6 (radius: 5) [04:42:59 -54016.240519] SLOW spr round 7 (radius: 5) [04:44:49 -54016.239475] SLOW spr round 8 (radius: 10) [04:46:35 -54016.238437] SLOW spr round 9 (radius: 15) [04:48:59 -54014.565373] SLOW spr round 10 (radius: 5) [04:51:05 -54014.564389] SLOW spr round 11 (radius: 10) [04:52:59 -54014.563409] SLOW spr round 12 (radius: 15) [04:55:17 -54014.562432] SLOW spr round 13 (radius: 20) [04:58:40 -54014.561458] SLOW spr round 14 (radius: 25) [05:02:34 -54014.116079] SLOW spr round 15 (radius: 5) [05:04:43 -54014.115133] SLOW spr round 16 (radius: 10) [05:06:42 -54014.115003] SLOW spr round 17 (radius: 15) [05:08:59 -54014.114997] SLOW spr round 18 (radius: 20) [05:12:22 -54014.114991] SLOW spr round 19 (radius: 25) [05:16:16 -54014.114986] Model parameter optimization (eps = 0.100000) [05:16:24] [worker #0] ML tree search #9, logLikelihood: -54014.056404 [05:16:24 -220319.249488] Initial branch length optimization [05:16:27 -180943.859922] Model parameter optimization (eps = 10.000000) [05:16:54 -180229.396026] AUTODETECT spr round 1 (radius: 5) [05:18:52 -134501.887643] AUTODETECT spr round 2 (radius: 10) [05:19:44] [worker #1] ML tree search #10, logLikelihood: -53979.180395 [05:21:02 -105680.343482] AUTODETECT spr round 3 (radius: 15) [05:23:32 -82341.342192] AUTODETECT spr round 4 (radius: 20) [05:26:06 -73035.509398] AUTODETECT spr round 5 (radius: 25) [05:28:50 -70113.922825] SPR radius for FAST iterations: 25 (autodetect) [05:28:50 -70113.922825] Model parameter optimization (eps = 3.000000) [05:29:05 -70091.289471] FAST spr round 1 (radius: 25) [05:31:24 -61613.266373] FAST spr round 2 (radius: 25) [05:33:12 -61199.155553] FAST spr round 3 (radius: 25) [05:34:50 -58612.985125] FAST spr round 4 (radius: 25) [05:36:19 -55278.990058] FAST spr round 5 (radius: 25) [05:37:47 -54084.795732] FAST spr round 6 (radius: 25) [05:39:17 -53996.453534] FAST spr round 7 (radius: 25) [05:40:42 -53990.479316] FAST spr round 8 (radius: 25) [05:42:03 -53990.478242] Model parameter optimization (eps = 1.000000) [05:42:18 -53985.998350] SLOW spr round 1 (radius: 5) [05:44:00 -53977.428188] SLOW spr round 2 (radius: 5) [05:45:40 -53976.179720] SLOW spr round 3 (radius: 5) [05:47:23 -53968.926159] SLOW spr round 4 (radius: 5) [05:49:01 -53967.033027] SLOW spr round 5 (radius: 5) [05:50:40 -53964.673013] SLOW spr round 6 (radius: 5) [05:52:17 -53964.672809] SLOW spr round 7 (radius: 10) [05:53:59 -53963.548419] SLOW spr round 8 (radius: 5) [05:56:02 -53961.447871] SLOW spr round 9 (radius: 5) [05:57:54 -53957.502717] SLOW spr round 10 (radius: 5) [05:59:40 -53954.418906] SLOW spr round 11 (radius: 5) [06:01:22 -53952.846772] SLOW spr round 12 (radius: 5) [06:02:59 -53952.846514] SLOW spr round 13 (radius: 10) [06:04:39 -53952.639655] SLOW spr round 14 (radius: 5) [06:06:39 -53952.632434] SLOW spr round 15 (radius: 10) [06:08:28 -53952.632428] SLOW spr round 16 (radius: 15) [06:10:49 -53952.483335] SLOW spr round 17 (radius: 5) [06:12:54 -53952.457475] SLOW spr round 18 (radius: 10) [06:14:50 -53952.457458] SLOW spr round 19 (radius: 15) [06:17:08 -53952.205360] SLOW spr round 20 (radius: 5) [06:19:13 -53952.205282] SLOW spr round 21 (radius: 10) [06:20:42] [worker #1] ML tree search #12, logLikelihood: -53955.111241 [06:21:09 -53952.205281] SLOW spr round 22 (radius: 15) [06:23:27 -53952.205279] SLOW spr round 23 (radius: 20) [06:26:46 -53952.205278] SLOW spr round 24 (radius: 25) [06:30:40 -53951.791566] SLOW spr round 25 (radius: 5) [06:32:50 -53951.791563] SLOW spr round 26 (radius: 10) [06:34:50 -53951.791562] SLOW spr round 27 (radius: 15) [06:37:09 -53951.791560] SLOW spr round 28 (radius: 20) [06:40:20 -53951.791559] SLOW spr round 29 (radius: 25) [06:43:59 -53951.791558] Model parameter optimization (eps = 0.100000) [06:44:03] [worker #0] ML tree search #11, logLikelihood: -53951.773559 [06:44:03 -220697.063642] Initial branch length optimization [06:44:06 -182223.382188] Model parameter optimization (eps = 10.000000) [06:44:35 -181538.588201] AUTODETECT spr round 1 (radius: 5) [06:46:24 -133643.643043] AUTODETECT spr round 2 (radius: 10) [06:48:25 -104218.008461] AUTODETECT spr round 3 (radius: 15) [06:50:36 -82842.957727] AUTODETECT spr round 4 (radius: 20) [06:52:59 -71983.785451] AUTODETECT spr round 5 (radius: 25) [06:55:26 -69696.284516] SPR radius for FAST iterations: 25 (autodetect) [06:55:26 -69696.284516] Model parameter optimization (eps = 3.000000) [06:55:43 -69654.008868] FAST spr round 1 (radius: 25) [06:57:59 -59000.881616] FAST spr round 2 (radius: 25) [06:59:46 -55109.350684] FAST spr round 3 (radius: 25) [07:01:17 -54375.554055] FAST spr round 4 (radius: 25) [07:02:48 -54290.946200] FAST spr round 5 (radius: 25) [07:04:08 -54277.939393] FAST spr round 6 (radius: 25) [07:05:24 -54277.419872] FAST spr round 7 (radius: 25) [07:06:39 -54277.419489] Model parameter optimization (eps = 1.000000) [07:06:55 -54273.103753] SLOW spr round 1 (radius: 5) [07:08:29 -54247.889177] SLOW spr round 2 (radius: 5) [07:10:05 -54240.775531] SLOW spr round 3 (radius: 5) [07:11:40 -54240.283128] SLOW spr round 4 (radius: 5) [07:13:14 -54237.315217] SLOW spr round 5 (radius: 5) [07:14:45 -54237.314356] SLOW spr round 6 (radius: 10) [07:16:19 -54237.313843] SLOW spr round 7 (radius: 15) [07:18:45 -54237.313842] SLOW spr round 8 (radius: 20) [07:22:07 -54237.313840] SLOW spr round 9 (radius: 25) [07:26:30 -54236.944551] SLOW spr round 10 (radius: 5) [07:28:30 -54236.944542] SLOW spr round 11 (radius: 10) [07:30:22 -54236.944541] SLOW spr round 12 (radius: 15) [07:32:36 -54236.944539] SLOW spr round 13 (radius: 20) [07:36:06 -54236.944537] SLOW spr round 14 (radius: 25) [07:40:27 -54236.944536] Model parameter optimization (eps = 0.100000) [07:40:38] [worker #0] ML tree search #13, logLikelihood: -54235.880551 [07:40:38 -220198.338392] Initial branch length optimization [07:40:40 -181810.704232] Model parameter optimization (eps = 10.000000) [07:41:08] [worker #1] ML tree search #14, logLikelihood: -53964.189325 [07:41:09 -181173.096317] AUTODETECT spr round 1 (radius: 5) [07:43:01 -131632.133518] AUTODETECT spr round 2 (radius: 10) [07:45:05 -105446.292077] AUTODETECT spr round 3 (radius: 15) [07:47:17 -85748.296444] AUTODETECT spr round 4 (radius: 20) [07:49:50 -70568.272332] AUTODETECT spr round 5 (radius: 25) [07:52:37 -65280.534188] SPR radius for FAST iterations: 25 (autodetect) [07:52:37 -65280.534188] Model parameter optimization (eps = 3.000000) [07:52:56 -65214.661175] FAST spr round 1 (radius: 25) [07:55:00 -55182.403055] FAST spr round 2 (radius: 25) [07:56:39 -54090.762634] FAST spr round 3 (radius: 25) [07:58:08 -53991.763121] FAST spr round 4 (radius: 25) [07:59:27 -53988.454766] FAST spr round 5 (radius: 25) [08:00:44 -53988.442046] Model parameter optimization (eps = 1.000000) [08:00:56 -53985.486429] SLOW spr round 1 (radius: 5) [08:02:36 -53969.257216] SLOW spr round 2 (radius: 5) [08:04:12 -53968.164967] SLOW spr round 3 (radius: 5) [08:05:43 -53968.164727] SLOW spr round 4 (radius: 10) [08:07:20 -53961.849365] SLOW spr round 5 (radius: 5) [08:09:17 -53956.889765] SLOW spr round 6 (radius: 5) [08:11:02 -53956.889212] SLOW spr round 7 (radius: 10) [08:12:41 -53956.889165] SLOW spr round 8 (radius: 15) [08:14:58 -53956.882236] SLOW spr round 9 (radius: 20) [08:18:11 -53956.882227] SLOW spr round 10 (radius: 25) [08:22:09 -53956.882219] Model parameter optimization (eps = 0.100000) [08:22:13] [worker #0] ML tree search #15, logLikelihood: -53956.840533 [08:22:13 -219742.520405] Initial branch length optimization [08:22:15 -181899.474610] Model parameter optimization (eps = 10.000000) [08:22:54 -181267.308660] AUTODETECT spr round 1 (radius: 5) [08:24:46 -133545.083347] AUTODETECT spr round 2 (radius: 10) [08:26:45 -105044.050030] AUTODETECT spr round 3 (radius: 15) [08:28:57 -87653.372347] AUTODETECT spr round 4 (radius: 20) [08:31:24 -78043.418195] AUTODETECT spr round 5 (radius: 25) [08:34:05 -69982.981979] SPR radius for FAST iterations: 25 (autodetect) [08:34:05 -69982.981979] Model parameter optimization (eps = 3.000000) [08:34:19 -69953.592440] FAST spr round 1 (radius: 25) [08:36:30 -55391.481713] FAST spr round 2 (radius: 25) [08:38:12 -54103.606886] FAST spr round 3 (radius: 25) [08:39:39 -54019.067764] FAST spr round 4 (radius: 25) [08:40:10] [worker #1] ML tree search #16, logLikelihood: -53959.539664 [08:41:01 -54000.576113] FAST spr round 5 (radius: 25) [08:42:18 -53993.298848] FAST spr round 6 (radius: 25) [08:43:33 -53991.082627] FAST spr round 7 (radius: 25) [08:44:47 -53991.082420] Model parameter optimization (eps = 1.000000) [08:45:02 -53978.729059] SLOW spr round 1 (radius: 5) [08:46:37 -53963.161349] SLOW spr round 2 (radius: 5) [08:48:11 -53956.700682] SLOW spr round 3 (radius: 5) [08:49:41 -53956.697091] SLOW spr round 4 (radius: 10) [08:51:18 -53954.062859] SLOW spr round 5 (radius: 5) [08:53:11 -53954.062804] SLOW spr round 6 (radius: 10) [08:54:56 -53954.062779] SLOW spr round 7 (radius: 15) [08:57:10 -53953.339318] SLOW spr round 8 (radius: 5) [08:59:10 -53953.339077] SLOW spr round 9 (radius: 10) [09:01:00 -53953.339062] SLOW spr round 10 (radius: 15) [09:03:13 -53953.339050] SLOW spr round 11 (radius: 20) [09:06:49 -53953.339040] SLOW spr round 12 (radius: 25) [09:11:18 -53953.038615] SLOW spr round 13 (radius: 5) [09:13:21 -53952.651895] SLOW spr round 14 (radius: 5) [09:15:09 -53952.651838] SLOW spr round 15 (radius: 10) [09:16:52 -53952.651836] SLOW spr round 16 (radius: 15) [09:19:06 -53952.651834] SLOW spr round 17 (radius: 20) [09:22:33 -53952.651832] SLOW spr round 18 (radius: 25) [09:26:52 -53952.651830] Model parameter optimization (eps = 0.100000) [09:27:00] [worker #0] ML tree search #17, logLikelihood: -53952.000784 [09:27:00 -219694.061401] Initial branch length optimization [09:27:04 -181116.966277] Model parameter optimization (eps = 10.000000) [09:27:34 -180528.581985] AUTODETECT spr round 1 (radius: 5) [09:29:25 -134620.977160] AUTODETECT spr round 2 (radius: 10) [09:31:25 -100761.784055] AUTODETECT spr round 3 (radius: 15) [09:33:34 -80215.242259] AUTODETECT spr round 4 (radius: 20) [09:34:57] [worker #1] ML tree search #18, logLikelihood: -53954.613934 [09:35:59 -68000.655312] AUTODETECT spr round 5 (radius: 25) [09:38:40 -65172.474640] SPR radius for FAST iterations: 25 (autodetect) [09:38:40 -65172.474640] Model parameter optimization (eps = 3.000000) [09:38:58 -65124.693359] FAST spr round 1 (radius: 25) [09:41:30 -54895.308934] FAST spr round 2 (radius: 25) [09:43:27 -54369.372277] FAST spr round 3 (radius: 25) [09:45:04 -54302.007795] FAST spr round 4 (radius: 25) [09:46:44 -54291.283937] FAST spr round 5 (radius: 25) [09:48:17 -54288.904350] FAST spr round 6 (radius: 25) [09:49:45 -54288.901295] Model parameter optimization (eps = 1.000000) [09:49:59 -54284.283246] SLOW spr round 1 (radius: 5) [09:51:49 -54273.992039] SLOW spr round 2 (radius: 5) [09:53:38 -54266.834356] SLOW spr round 3 (radius: 5) [09:55:25 -54266.834295] SLOW spr round 4 (radius: 10) [09:57:18 -54261.343193] SLOW spr round 5 (radius: 5) [09:59:33 -54259.517458] SLOW spr round 6 (radius: 5) [10:01:30 -54259.517238] SLOW spr round 7 (radius: 10) [10:03:09 -54259.517234] SLOW spr round 8 (radius: 15) [10:05:51 -54259.517233] SLOW spr round 9 (radius: 20) [10:09:48 -54258.466423] SLOW spr round 10 (radius: 5) [10:12:11 -54258.466396] SLOW spr round 11 (radius: 10) [10:14:23 -54258.466394] SLOW spr round 12 (radius: 15) [10:17:00 -54258.466394] SLOW spr round 13 (radius: 20) [10:21:00 -54258.466394] SLOW spr round 14 (radius: 25) [10:25:46 -54257.822695] SLOW spr round 15 (radius: 5) [10:28:13 -53965.421515] SLOW spr round 16 (radius: 5) [10:30:24 -53965.296441] SLOW spr round 17 (radius: 5) [10:32:21 -53965.296135] SLOW spr round 18 (radius: 10) [10:34:16 -53965.296097] SLOW spr round 19 (radius: 15) [10:37:01 -53965.296089] SLOW spr round 20 (radius: 20) [10:40:54 -53965.296088] SLOW spr round 21 (radius: 25) [10:45:41 -53965.296087] Model parameter optimization (eps = 0.100000) [10:45:50] [worker #0] ML tree search #19, logLikelihood: -53965.189283 [10:47:39] [worker #1] ML tree search #20, logLikelihood: -53942.632466 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.189128,0.400285) (0.289223,0.503751) (0.332809,1.040594) (0.188840,2.289133) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -53942.632466 AIC score: 111871.264931 / AICc score: 8059955.264931 / BIC score: 117459.678873 Free parameters (model + branch lengths): 1993 WARNING: Number of free parameters (K=1993) is larger than alignment size (n=122). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 269 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P85298/3_mltree/P85298.raxml.bestTreeCollapsed Best ML tree saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P85298/3_mltree/P85298.raxml.bestTree All ML trees saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P85298/3_mltree/P85298.raxml.mlTrees Optimized model saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P85298/3_mltree/P85298.raxml.bestModel Execution log saved to: /truba/home/emrah/WORKFOLDER/PROD/300621_run/phylogeny-snakemake/results/P85298/3_mltree/P85298.raxml.log Analysis started: 08-Jul-2021 00:07:32 / finished: 08-Jul-2021 10:55:11 Elapsed time: 38859.360 seconds Consumed energy: 3400.691 Wh (= 17 km in an electric car, or 85 km with an e-scooter!)