RAxML-NG v. 1.0.2 released on 22.02.2021 by The Exelixis Lab. Developed by: Alexey M. Kozlov and Alexandros Stamatakis. Contributors: Diego Darriba, Tomas Flouri, Benoit Morel, Sarah Lutteropp, Ben Bettisworth. Latest version: https://github.com/amkozlov/raxml-ng Questions/problems/suggestions? Please visit: https://groups.google.com/forum/#!forum/raxml System: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, 36 cores, 251 GB RAM RAxML-NG was called at 19-Jul-2021 17:46:50 as follows: raxml-ng --msa /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P78411/2_msa/P78411_trimmed_msa.fasta --data-type AA --model LG4X --prefix /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P78411/3_mltree/P78411 --seed 2 --threads 1 --tree rand{20} pars{20} Analysis options: run mode: ML tree search start tree(s): random (20) random seed: 2 tip-inner: OFF pattern compression: ON per-rate scalers: OFF site repeats: ON fast spr radius: AUTO spr subtree cutoff: 1.000000 branch lengths: proportional (ML estimate, algorithm: NR-FAST) SIMD kernels: AVX2 parallelization: coarse-grained (auto), NONE/sequential [00:00:00] Reading alignment from file: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P78411/2_msa/P78411_trimmed_msa.fasta [00:00:00] Loaded alignment with 999 taxa and 59 sites WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_E2AIB6_E2AIB6_CAMFO_104421 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and sp_Q24248_ARA_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_B4IX64_B4IX64_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_B4HG41_B4HG41_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_Q2M0L2_Q2M0L2_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_B0VZ23_B0VZ23_CULQU_7176 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_K7IW52_K7IW52_NASVI_7425 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A088AU11_A0A088AU11_APIME_7460 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A158N979_A0A158N979_ATTCE_12957 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_Q7Q7V0_Q7Q7V0_ANOGA_7165 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A212EMQ2_A0A212EMQ2_DANPL_278856 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A139WLH3_A0A139WLH3_TRICA_7070 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_F4WMP3_F4WMP3_ACREC_103372 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A0Q9WW46_A0A0Q9WW46_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_B3M9Q3_B3M9Q3_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_E2C0I5_E2C0I5_HARSA_610380 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_B4GRH3_B4GRH3_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_B4LGH4_B4LGH4_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_Q171W8_Q171W8_AEDAE_7159 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_E0VRS8_E0VRS8_PEDHC_121224 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_E0W0R2_E0W0R2_PEDHC_121224 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_B4L0Q1_B4L0Q1_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_T1GJU3_T1GJU3_MEGSC_36166 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_T1HE33_T1HE33_RHOPR_13249 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A067RIC2_A0A067RIC2_ZOONE_136037 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_N6UAI2_N6UAI2_DENPD_77166 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A084WDU2_A0A084WDU2_ANOSI_74873 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A0L0CA91_A0A0L0CA91_LUCCU_7375 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A0L7LV91_A0A0L7LV91_9NEOP_104452 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A026W4C7_A0A026W4C7_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A0M9A5L6_A0A0M9A5L6_9HYME_166423 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A194PYK0_A0A194PYK0_PAPXU_66420 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A0L7QZP3_A0A0L7QZP3_9HYME_597456 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A154PAU3_A0A154PAU3_9HYME_178035 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A151J0E6_A0A151J0E6_9HYME_471704 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A195B425_A0A195B425_9HYME_520822 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A195CU51_A0A195CU51_9HYME_456900 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A1S3CVQ9_A0A1S3CVQ9_DIACI_121845 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A0M3QWL3_A0A0M3QWL3_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A0M5J8F2_A0A0M5J8F2_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A1D2N4X1_A0A1D2N4X1_ORCCI_48709 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A1J1IJB1_A0A1J1IJB1_9DIPT_568069 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A1W4UUM0_A0A1W4UUM0_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A2A4JQK2_A0A2A4JQK2_HELVI_7102 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A2J7Q3I9_A0A2J7Q3I9_9NEOP_105785 are exactly identical! WARNING: Sequences tr_B4QRP7_B4QRP7_DROSI_7240 and tr_A0A2P8XPB0_A0A2P8XPB0_BLAGE_6973 are exactly identical! WARNING: Sequences tr_B4QRP8_B4QRP8_DROSI_7240 and tr_E9GNW4_E9GNW4_DAPPU_6669 are exactly identical! WARNING: Sequences tr_B4QRP8_B4QRP8_DROSI_7240 and sp_P54269_CAUP_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QRP8_B4QRP8_DROSI_7240 and tr_B4IX63_B4IX63_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4QRP8_B4QRP8_DROSI_7240 and tr_B4HG44_B4HG44_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QRP8_B4QRP8_DROSI_7240 and tr_Q2M0L1_Q2M0L1_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4QRP8_B4QRP8_DROSI_7240 and tr_B4NLX9_B4NLX9_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4QRP8_B4QRP8_DROSI_7240 and tr_B3M9Q2_B3M9Q2_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4QRP8_B4QRP8_DROSI_7240 and tr_B4GRH5_B4GRH5_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4QRP8_B4QRP8_DROSI_7240 and tr_B4LGH3_B4LGH3_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4QRP8_B4QRP8_DROSI_7240 and tr_B4L0Q0_B4L0Q0_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4QRP8_B4QRP8_DROSI_7240 and tr_T1GVM0_T1GVM0_MEGSC_36166 are exactly identical! WARNING: Sequences tr_B4QRP8_B4QRP8_DROSI_7240 and tr_A0A164RRE3_A0A164RRE3_9CRUS_35525 are exactly identical! WARNING: Sequences tr_B4QRP8_B4QRP8_DROSI_7240 and tr_A0A1W4UUC3_A0A1W4UUC3_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_E2AIB9_E2AIB9_CAMFO_104421 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_W5JG55_W5JG55_ANODA_43151 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_M9PI45_M9PI45_DROME_7227 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_B4IWZ1_B4IWZ1_DROGR_7222 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_B4HG50_B4HG50_DROSE_7238 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_Q2M0K9_Q2M0K9_DROPS_46245 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_B0VZ28_B0VZ28_CULQU_7176 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_K7IW51_K7IW51_NASVI_7425 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_H9ITQ9_H9ITQ9_BOMMO_7091 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A158N8X2_A0A158N8X2_ATTCE_12957 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_Q7Q7U9_Q7Q7U9_ANOGA_7165 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A212EMR3_A0A212EMR3_DANPL_278856 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A139WL71_A0A139WL71_TRICA_7070 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_F4WMP6_F4WMP6_ACREC_103372 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_B4NDK3_B4NDK3_DROWI_7260 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_B3M9P9_B3M9P9_DROAN_7217 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_J9KA71_J9KA71_ACYPI_7029 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_B4GRH6_B4GRH6_DROPE_7234 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_B4LGH0_B4LGH0_DROVI_7244 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_Q171W7_Q171W7_AEDAE_7159 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_E0W0R5_E0W0R5_PEDHC_121224 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_B4L0P7_B4L0P7_DROMO_7230 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_T1GN44_T1GN44_MEGSC_36166 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A067R8U0_A0A067R8U0_ZOONE_136037 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_U4UQ21_U4UQ21_DENPD_77166 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A084WDT6_A0A084WDT6_ANOSI_74873 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A0L0C998_A0A0L0C998_LUCCU_7375 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A0L7L7H7_A0A0L7L7H7_9NEOP_104452 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A026W5Y9_A0A026W5Y9_OOCBI_2015173 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A0M9A7W1_A0A0M9A7W1_9HYME_166423 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A194Q503_A0A194Q503_PAPXU_66420 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A0L7QZW5_A0A0L7QZW5_9HYME_597456 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A154P8Q5_A0A154P8Q5_9HYME_178035 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A151J012_A0A151J012_9HYME_471704 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A195B4P8_A0A195B4P8_9HYME_520822 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A195FNQ3_A0A195FNQ3_9HYME_34720 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A195CUM5_A0A195CUM5_9HYME_456900 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A1S3DR38_A0A1S3DR38_DIACI_121845 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A1S4EBL4_A0A1S4EBL4_DIACI_121845 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A0M4EZX6_A0A0M4EZX6_DROBS_30019 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A1J1IJB5_A0A1J1IJB5_9DIPT_568069 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A1W4UH91_A0A1W4UH91_DROFC_30025 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A1W4WP17_A0A1W4WP17_AGRPL_224129 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A2J7Q3I3_A0A2J7Q3I3_9NEOP_105785 are exactly identical! WARNING: Sequences tr_B4QRQ3_B4QRQ3_DROSI_7240 and tr_A0A2P8XLX2_A0A2P8XLX2_BLAGE_6973 are exactly identical! WARNING: Sequences tr_E9GNW3_E9GNW3_DAPPU_6669 and tr_A0A164RRA1_A0A164RRA1_9CRUS_35525 are exactly identical! WARNING: Sequences tr_A0A2R8QU68_A0A2R8QU68_DANRE_7955 and tr_A0A3B1IRZ2_A0A3B1IRZ2_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A0A2R8QU68_A0A2R8QU68_DANRE_7955 and tr_A0A2D0TA34_A0A2D0TA34_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_E1C567_E1C567_CHICK_9031 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and sp_Q8BIA3_MKX_MOUSE_10090 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_M3YGQ2_M3YGQ2_MUSPF_9669 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A3B3H2R7_A0A3B3H2R7_ORYLA_8090 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_G1S535_G1S535_NOMLE_61853 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_G1PKE3_G1PKE3_MYOLU_59463 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_G3H3P0_G3H3P0_CRIGR_10029 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_G3RJD8_G3RJD8_GORGO_9595 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_H2NA21_H2NA21_PONAB_9601 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_G1N4E7_G1N4E7_MELGA_9103 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_G1KH38_G1KH38_ANOCA_28377 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_G1SZQ8_G1SZQ8_RABIT_9986 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_J9JHT6_J9JHT6_CANLF_9615 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_H2Q1S1_H2Q1S1_PANTR_9598 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_F6QLA0_F6QLA0_ORNAN_9258 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_F6ZXI5_F6ZXI5_MONDO_13616 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_F6YL82_F6YL82_HORSE_9796 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_D3ZUL2_D3ZUL2_RAT_10116 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A3B5QAY2_A0A3B5QAY2_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A3B5RAR1_A0A3B5RAR1_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A3B5RFL0_A0A3B5RFL0_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_I3J746_I3J746_ORENI_8128 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_I3N8K0_I3N8K0_ICTTR_43179 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_H0XMQ7_H0XMQ7_OTOGA_30611 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_H2SEL4_H2SEL4_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A286XG80_A0A286XG80_CAVPO_10141 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and sp_Q8IYA7_MKX_HUMAN_9606 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_F7BEZ3_F7BEZ3_MACMU_9544 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_G5C146_G5C146_HETGA_10181 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_K7FAU9_K7FAU9_PELSI_13735 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_Q4SKS6_Q4SKS6_TETNG_99883 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_G3NA64_G3NA64_GASAC_69293 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_G3SXJ8_G3SXJ8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_G3VQX6_G3VQX6_SARHA_9305 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_H0YS69_H0YS69_TAEGU_59729 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_F7E0P2_F7E0P2_XENTR_8364 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_F7FZ99_F7FZ99_CALJA_9483 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_I3LUD0_I3LUD0_PIG_9823 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_H3AD64_H3AD64_LATCH_7897 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_G7PEN6_G7PEN6_MACFA_9541 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_E1BMD2_E1BMD2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_M3W1T3_M3W1T3_FELCA_9685 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_U3JXF9_U3JXF9_FICAL_59894 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A3B1KH92_A0A3B1KH92_ASTMX_7994 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_W5ML14_W5ML14_LEPOC_7918 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A087XME1_A0A087XME1_POEFO_48698 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A2I3LRS7_A0A2I3LRS7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A091CM27_A0A091CM27_FUKDA_885580 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A0P7VAF3_A0A0P7VAF3_9TELE_113540 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A151PCJ3_A0A151PCJ3_ALLMI_8496 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A091WIM0_A0A091WIM0_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A099YYH0_A0A099YYH0_TINGU_94827 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A093IGP9_A0A093IGP9_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A091HUR4_A0A091HUR4_CALAN_9244 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A1S2ZX65_A0A1S2ZX65_ERIEU_9365 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A1S3F1N2_A0A1S3F1N2_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A1S3Q7M1_A0A1S3Q7M1_SALSA_8030 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A1L8FQR3_A0A1L8FQR3_XENLA_8355 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A1L8FVF8_A0A1L8FVF8_XENLA_8355 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A1U7U5S3_A0A1U7U5S3_TARSY_1868482 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A3Q0CGF0_A0A3Q0CGF0_MESAU_10036 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A1V4KLX8_A0A1V4KLX8_PATFA_372326 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A2I4BMH0_A0A2I4BMH0_9TELE_52670 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A218V672_A0A218V672_9PASE_299123 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A226MQ12_A0A226MQ12_CALSU_9009 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A226PZ77_A0A226PZ77_COLVI_9014 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A2D0SB76_A0A2D0SB76_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_W5UK52_W5UK52_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A2K5L9B2_A0A2K5L9B2_CERAT_9531 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A2K6DAN7_A0A2K6DAN7_MACNE_9545 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A2K5X9L6_A0A2K5X9L6_MANLE_9568 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A2R9C923_A0A2R9C923_PANPA_9597 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A2U3X566_A0A2U3X566_ODORO_9708 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A2U3Y744_A0A2U3Y744_LEPWE_9713 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A2U9CW63_A0A2U9CW63_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A2Y9E362_A0A2Y9E362_TRIMA_127582 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A2Y9IG28_A0A2Y9IG28_ENHLU_391180 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A2Y9NZA3_A0A2Y9NZA3_DELLE_9749 are exactly identical! WARNING: Sequences tr_A9UGK1_A9UGK1_DANRE_7955 and tr_A0A2Y9S8M9_A0A2Y9S8M9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_B3DH47_B3DH47_DANRE_7955 and tr_H2U6V0_H2U6V0_TAKRU_31033 are exactly identical! WARNING: Sequences tr_B3DH47_B3DH47_DANRE_7955 and tr_H3C7N7_H3C7N7_TETNG_99883 are exactly identical! WARNING: Sequences tr_B3DH47_B3DH47_DANRE_7955 and tr_A0A3B1JQN1_A0A3B1JQN1_ASTMX_7994 are exactly identical! WARNING: Sequences tr_B3DH47_B3DH47_DANRE_7955 and tr_A0A2D0SC12_A0A2D0SC12_ICTPU_7998 are exactly identical! WARNING: Sequences tr_B3DH47_B3DH47_DANRE_7955 and tr_A0A2D0SED5_A0A2D0SED5_ICTPU_7998 are exactly identical! WARNING: Sequences tr_B3DH47_B3DH47_DANRE_7955 and tr_A0A2U9BD31_A0A2U9BD31_SCOMX_52904 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A1D5PSE4_A0A1D5PSE4_CHICK_9031 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and sp_P81067_IRX3_MOUSE_10090 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and sp_P81068_IRX1_MOUSE_10090 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_M3XW79_M3XW79_MUSPF_9669 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_H2LKE8_H2LKE8_ORYLA_8090 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2I3GKN2_A0A2I3GKN2_NOMLE_61853 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_G3RDV6_G3RDV6_GORGO_9595 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_G3SJC2_G3SJC2_GORGO_9595 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_H2NQW9_H2NQW9_PONAB_9601 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_H2PF50_H2PF50_PONAB_9601 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_H9GSE2_H9GSE2_ANOCA_28377 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_G1U0F4_G1U0F4_RABIT_9986 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_J9NST5_J9NST5_CANLF_9615 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_H2QB38_H2QB38_PANTR_9598 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_H2QQL6_H2QQL6_PANTR_9598 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_F7ERT7_F7ERT7_ORNAN_9258 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_F7BBU9_F7BBU9_MONDO_13616 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_F7FAB5_F7FAB5_MONDO_13616 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_F6UIP9_F6UIP9_HORSE_9796 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_F7D6M5_F7D6M5_HORSE_9796 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_W5Q991_W5Q991_SHEEP_9940 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_D4A9L1_D4A9L1_RAT_10116 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A3B5Q2Z2_A0A3B5Q2Z2_XIPMA_8083 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_I3JJC8_I3JJC8_ORENI_8128 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A287CYA2_A0A287CYA2_ICTTR_43179 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_I3MRY9_I3MRY9_ICTTR_43179 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_H0XRR4_H0XRR4_OTOGA_30611 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_H0Y0Q0_H0Y0Q0_OTOGA_30611 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_H2T1F1_H2T1F1_TAKRU_31033 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A286XZ12_A0A286XZ12_CAVPO_10141 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_H0VWJ4_H0VWJ4_CAVPO_10141 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and sp_P78414_IRX1_HUMAN_9606 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and sp_P78415_IRX3_HUMAN_9606 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_F7D0A0_F7D0A0_MACMU_9544 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_F7H9D7_F7H9D7_MACMU_9544 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_G5BSE0_G5BSE0_HETGA_10181 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_K7FHW5_K7FHW5_PELSI_13735 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_K7GFH5_K7GFH5_PELSI_13735 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_G3NTM4_G3NTM4_GASAC_69293 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_G3T8L3_G3T8L3_LOXAF_9785 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_G3U091_G3U091_LOXAF_9785 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_G3WH77_G3WH77_SARHA_9305 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_G3WK47_G3WK47_SARHA_9305 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_H0ZDV5_H0ZDV5_TAEGU_59729 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and sp_Q6F2E3_IRX1_XENTR_8364 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and sp_Q6NVN3_IRX3_XENTR_8364 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2R8NEZ5_A0A2R8NEZ5_CALJA_9483 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_F7INF1_F7INF1_CALJA_9483 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A287AH55_A0A287AH55_PIG_9823 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_F1RF01_F1RF01_PIG_9823 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_H3AUS5_H3AUS5_LATCH_7897 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_H3AYK1_H3AYK1_LATCH_7897 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_G1L498_G1L498_AILME_9646 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_G7P767_G7P767_MACFA_9541 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_G7Q148_G7Q148_MACFA_9541 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A2VDX5_A2VDX5_BOVIN_9913 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_E1BJK0_E1BJK0_BOVIN_9913 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2I2UHB8_A0A2I2UHB8_FELCA_9685 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A337SU00_A0A337SU00_FELCA_9685 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_U3JRP1_U3JRP1_FICAL_59894 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_U3HYD2_U3HYD2_ANAPL_8839 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_U3J3U8_U3J3U8_ANAPL_8839 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_W5KZF9_W5KZF9_ASTMX_7994 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_W5MQU0_W5MQU0_LEPOC_7918 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A087YF87_A0A087YF87_POEFO_48698 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A096NIE6_A0A096NIE6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2I3LE75_A0A2I3LE75_PAPAN_9555 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A091E781_A0A091E781_FUKDA_885580 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A0D9QZ17_A0A0D9QZ17_CHLSB_60711 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A0D9RXP4_A0A0D9RXP4_CHLSB_60711 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A0P7UWF1_A0A0P7UWF1_9TELE_113540 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A0Q3R279_A0A0Q3R279_AMAAE_12930 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A091EYR8_A0A091EYR8_CORBR_85066 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A091F1M3_A0A091F1M3_CORBR_85066 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A091J5I4_A0A091J5I4_EGRGA_188379 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A093PGA9_A0A093PGA9_9PASS_328815 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A087QX60_A0A087QX60_APTFO_9233 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A093HRW1_A0A093HRW1_STRCA_441894 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A093HU92_A0A093HU92_STRCA_441894 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A091VI45_A0A091VI45_OPIHO_30419 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A091VL91_A0A091VL91_OPIHO_30419 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A099Z4G8_A0A099Z4G8_TINGU_94827 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A099Z9W2_A0A099Z9W2_TINGU_94827 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A091FHL8_A0A091FHL8_9AVES_55661 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A091GIV9_A0A091GIV9_9AVES_55661 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2I0M2F4_A0A2I0M2F4_COLLI_8932 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2I0MXW6_A0A2I0MXW6_COLLI_8932 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A093G833_A0A093G833_DRYPU_118200 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A093G9S6_A0A093G9S6_DRYPU_118200 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A091HUZ8_A0A091HUZ8_CALAN_9244 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A091IGK0_A0A091IGK0_CALAN_9244 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A1S3ANU1_A0A1S3ANU1_ERIEU_9365 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A1S3EXZ9_A0A1S3EXZ9_DIPOR_10020 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A1S3G3T6_A0A1S3G3T6_DIPOR_10020 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A1S3QLA4_A0A1S3QLA4_SALSA_8030 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A1S3QXM0_A0A1S3QXM0_SALSA_8030 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A1S3QYJ7_A0A1S3QYJ7_SALSA_8030 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A1L8FRY9_A0A1L8FRY9_XENLA_8355 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A1L8GEK9_A0A1L8GEK9_XENLA_8355 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A1L8GK77_A0A1L8GK77_XENLA_8355 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A1U7T683_A0A1U7T683_TARSY_1868482 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A3Q0GSJ8_A0A3Q0GSJ8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A3Q0GYU7_A0A3Q0GYU7_ALLSI_38654 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A1U7Q7W2_A0A1U7Q7W2_MESAU_10036 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A1U7QHR1_A0A1U7QHR1_MESAU_10036 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A1V4J832_A0A1V4J832_PATFA_372326 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A1V4K1P5_A0A1V4K1P5_PATFA_372326 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2I4ATT5_A0A2I4ATT5_9TELE_52670 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A218UY75_A0A218UY75_9PASE_299123 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A218VAD2_A0A218VAD2_9PASE_299123 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A226N8E3_A0A226N8E3_CALSU_9009 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A226NAG8_A0A226NAG8_CALSU_9009 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A226P290_A0A226P290_COLVI_9014 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2D0TAP7_A0A2D0TAP7_ICTPU_7998 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2K5MHV0_A0A2K5MHV0_CERAT_9531 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2K5N778_A0A2K5N778_CERAT_9531 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2K6BHC7_A0A2K6BHC7_MACNE_9545 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2K6BLC4_A0A2K6BLC4_MACNE_9545 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2K5X9N8_A0A2K5X9N8_MANLE_9568 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2R8Z834_A0A2R8Z834_PANPA_9597 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2R9BLD3_A0A2R9BLD3_PANPA_9597 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2U3VLY6_A0A2U3VLY6_ODORO_9708 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2U3WV19_A0A2U3WV19_ODORO_9708 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2U3XMF0_A0A2U3XMF0_LEPWE_9713 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2U3Y5N5_A0A2U3Y5N5_LEPWE_9713 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2U9AZ49_A0A2U9AZ49_SCOMX_52904 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2Y9DBS7_A0A2Y9DBS7_TRIMA_127582 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2Y9DTL9_A0A2Y9DTL9_TRIMA_127582 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2Y9KFL4_A0A2Y9KFL4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2Y9KN05_A0A2Y9KN05_ENHLU_391180 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2Y9LQ88_A0A2Y9LQ88_DELLE_9749 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2Y9P4G0_A0A2Y9P4G0_DELLE_9749 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2Y9SW24_A0A2Y9SW24_PHYCD_9755 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A2Y9SWV9_A0A2Y9SWV9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A384D1U3_A0A384D1U3_URSMA_29073 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A384DJP1_A0A384DJP1_URSMA_29073 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A383YXY0_A0A383YXY0_BALAS_310752 are exactly identical! WARNING: Sequences tr_B3DKL9_B3DKL9_DANRE_7955 and tr_A0A384AWF3_A0A384AWF3_BALAS_310752 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_Q90Z68_Q90Z68_DANRE_7955 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_H2MF42_H2MF42_ORYLA_8090 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_A0A3B5RAK2_A0A3B5RAK2_XIPMA_8083 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_I3J3T0_I3J3T0_ORENI_8128 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_A0A3B5KD74_A0A3B5KD74_TAKRU_31033 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_H3DRG1_H3DRG1_TETNG_99883 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_G3PWN7_G3PWN7_GASAC_69293 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_A0A3B1JMW1_A0A3B1JMW1_ASTMX_7994 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_W5MJR7_W5MJR7_LEPOC_7918 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_A0A087YDF6_A0A087YDF6_POEFO_48698 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_A0A0P7UM27_A0A0P7UM27_9TELE_113540 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_A0A0P7VVD4_A0A0P7VVD4_9TELE_113540 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_A0A1S3KVR8_A0A1S3KVR8_SALSA_8030 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_A0A1S3PVE7_A0A1S3PVE7_SALSA_8030 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_A0A1S3QDW1_A0A1S3QDW1_SALSA_8030 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_A0A1S3QXQ9_A0A1S3QXQ9_SALSA_8030 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_A0A2I4B6R7_A0A2I4B6R7_9TELE_52670 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_A0A060YNT2_A0A060YNT2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_A0A2D0Q956_A0A2D0Q956_ICTPU_7998 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_A0A2D0SEE3_A0A2D0SEE3_ICTPU_7998 are exactly identical! WARNING: Sequences tr_F1Q7T5_F1Q7T5_DANRE_7955 and tr_A0A2U9BDP0_A0A2U9BDP0_SCOMX_52904 are exactly identical! WARNING: Sequences tr_Q1LWG1_Q1LWG1_DANRE_7955 and tr_A0A2D0S0U9_A0A2D0S0U9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and sp_P81066_IRX2_MOUSE_10090 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and sp_Q9JKQ4_IRX5_MOUSE_10090 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_M3XW91_M3XW91_MUSPF_9669 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_M3Y8D5_M3Y8D5_MUSPF_9669 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A3B3HVD5_A0A3B3HVD5_ORYLA_8090 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A3B3IH10_A0A3B3IH10_ORYLA_8090 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G1QKF5_G1QKF5_NOMLE_61853 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G1RK74_G1RK74_NOMLE_61853 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G1NXP2_G1NXP2_MYOLU_59463 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G1Q1N2_G1Q1N2_MYOLU_59463 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G3RI39_G3RI39_GORGO_9595 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G3S1Z7_G3S1Z7_GORGO_9595 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2J8TM00_A0A2J8TM00_PONAB_9601 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2J8VYN3_A0A2J8VYN3_PONAB_9601 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G1SJB3_G1SJB3_RABIT_9986 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G1SWP2_G1SWP2_RABIT_9986 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_E2RNP5_E2RNP5_CANLF_9615 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_E2RP58_E2RP58_CANLF_9615 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2I3RS02_A0A2I3RS02_PANTR_9598 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_H2QQL5_H2QQL5_PANTR_9598 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_F7EWI7_F7EWI7_MONDO_13616 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_F6TTL3_F6TTL3_HORSE_9796 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_D3ZGA0_D3ZGA0_RAT_10116 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G3V7I4_G3V7I4_RAT_10116 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A3B5QFV7_A0A3B5QFV7_XIPMA_8083 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_M4AVU1_M4AVU1_XIPMA_8083 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_I3J3S8_I3J3S8_ORENI_8128 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_I3KPC3_I3KPC3_ORENI_8128 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_I3M2G0_I3M2G0_ICTTR_43179 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_I3MUJ5_I3MUJ5_ICTTR_43179 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_H0WP91_H0WP91_OTOGA_30611 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_H0X7Z9_H0X7Z9_OTOGA_30611 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_H2TKW2_H2TKW2_TAKRU_31033 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_H0VKF5_H0VKF5_CAVPO_10141 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and sp_P78411_IRX5_HUMAN_9606 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and sp_Q9BZI1_IRX2_HUMAN_9606 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_F6VTG9_F6VTG9_MACMU_9544 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_F7HMJ3_F7HMJ3_MACMU_9544 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G5BSD9_G5BSD9_HETGA_10181 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_K7FHR3_K7FHR3_PELSI_13735 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_K7GF31_K7GF31_PELSI_13735 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_Q4S1Q2_Q4S1Q2_TETNG_99883 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G3NYF5_G3NYF5_GASAC_69293 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G3UHZ8_G3UHZ8_LOXAF_9785 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G3UK62_G3UK62_LOXAF_9785 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G3VWM5_G3VWM5_SARHA_9305 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G1K3A9_G1K3A9_XENTR_8364 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and sp_Q4LDQ3_IRX5_XENTR_8364 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2R8MNS0_A0A2R8MNS0_CALJA_9483 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_F7E8H2_F7E8H2_CALJA_9483 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A286ZKM7_A0A286ZKM7_PIG_9823 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A287BF95_A0A287BF95_PIG_9823 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_H3B7V3_H3B7V3_LATCH_7897 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G1M419_G1M419_AILME_9646 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G7P764_G7P764_MACFA_9541 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_E1B855_E1B855_BOVIN_9913 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_G3N2B2_G3N2B2_BOVIN_9913 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_L5K9X2_L5K9X2_PTEAL_9402 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_L5KX79_L5KX79_PTEAL_9402 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A337S5L0_A0A337S5L0_FELCA_9685 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A337S8Y6_A0A337S8Y6_FELCA_9685 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_W5MJP3_W5MJP3_LEPOC_7918 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A087Y567_A0A087Y567_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A087YDF7_A0A087YDF7_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A087YDG5_A0A087YDG5_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A096MNY6_A0A096MNY6_PAPAN_9555 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A096NIE7_A0A096NIE7_PAPAN_9555 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A0D9QZ13_A0A0D9QZ13_CHLSB_60711 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A0D9RXP8_A0A0D9RXP8_CHLSB_60711 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A0N8JXX9_A0A0N8JXX9_9TELE_113540 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A0P7UEE2_A0A0P7UEE2_9TELE_113540 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A151MS32_A0A151MS32_ALLMI_8496 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A091FWV3_A0A091FWV3_9AVES_55661 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2I0M2F3_A0A2I0M2F3_COLLI_8932 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A093II23_A0A093II23_DRYPU_118200 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A1S2ZK63_A0A1S2ZK63_ERIEU_9365 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A1S3AP23_A0A1S3AP23_ERIEU_9365 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A1S3G500_A0A1S3G500_DIPOR_10020 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A1S3KVX9_A0A1S3KVX9_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A1S3MKB2_A0A1S3MKB2_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A1L8GE64_A0A1L8GE64_XENLA_8355 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A3Q0DUZ5_A0A3Q0DUZ5_TARSY_1868482 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A3Q0DXG3_A0A3Q0DXG3_TARSY_1868482 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A3Q0FJ22_A0A3Q0FJ22_ALLSI_38654 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A1U7R4F1_A0A1U7R4F1_MESAU_10036 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A1U8CG23_A0A1U8CG23_MESAU_10036 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A1V4K1K4_A0A1V4K1K4_PATFA_372326 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2I4CY48_A0A2I4CY48_9TELE_52670 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A060W5Z2_A0A060W5Z2_ONCMY_8022 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A060YLR0_A0A060YLR0_ONCMY_8022 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A060YQZ6_A0A060YQZ6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A218UY55_A0A218UY55_9PASE_299123 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A226NAI4_A0A226NAI4_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A226P9J0_A0A226P9J0_COLVI_9014 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2D0Q934_A0A2D0Q934_ICTPU_7998 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_W5UA01_W5UA01_ICTPU_7998 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2K5KLU6_A0A2K5KLU6_CERAT_9531 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2K5P465_A0A2K5P465_CERAT_9531 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2K6BWQ0_A0A2K6BWQ0_MACNE_9545 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2K6DKG8_A0A2K6DKG8_MACNE_9545 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2K5XI74_A0A2K5XI74_MANLE_9568 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2R9AU49_A0A2R9AU49_PANPA_9597 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2U4CML7_A0A2U4CML7_TURTR_9739 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2U3YA70_A0A2U3YA70_LEPWE_9713 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2U3Z891_A0A2U3Z891_LEPWE_9713 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2Y9DCP1_A0A2Y9DCP1_TRIMA_127582 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2Y9DTY7_A0A2Y9DTY7_TRIMA_127582 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2Y9K4Z4_A0A2Y9K4Z4_ENHLU_391180 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2Y9KTA8_A0A2Y9KTA8_ENHLU_391180 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2Y9LV21_A0A2Y9LV21_DELLE_9749 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2Y9NVJ6_A0A2Y9NVJ6_DELLE_9749 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2Y9SSY7_A0A2Y9SSY7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A2Y9STK3_A0A2Y9STK3_PHYCD_9755 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A384D2H2_A0A384D2H2_URSMA_29073 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A384DJL8_A0A384DJL8_URSMA_29073 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A383YYH8_A0A383YYH8_BALAS_310752 are exactly identical! WARNING: Sequences tr_Q1LXU5_Q1LXU5_DANRE_7955 and tr_A0A384AWT9_A0A384AWT9_BALAS_310752 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_F1NHU5_F1NHU5_CHICK_9031 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_H2MF15_H2MF15_ORYLA_8090 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_R4GBL4_R4GBL4_ANOCA_28377 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_M4A009_M4A009_XIPMA_8083 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_I3J3S5_I3J3S5_ORENI_8128 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_H2TLF5_H2TLF5_TAKRU_31033 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_K7FHH7_K7FHH7_PELSI_13735 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_H3D7X2_H3D7X2_TETNG_99883 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_G3PWN3_G3PWN3_GASAC_69293 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_H3AQA8_H3AQA8_LATCH_7897 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_U3JZP4_U3JZP4_FICAL_59894 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_W5MJM9_W5MJM9_LEPOC_7918 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A087YDI5_A0A087YDI5_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A0N8K1F2_A0A0N8K1F2_9TELE_113540 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A0P7THZ4_A0A0P7THZ4_9TELE_113540 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A151MS36_A0A151MS36_ALLMI_8496 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A0Q3PXW0_A0A0Q3PXW0_AMAAE_12930 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A091FPB4_A0A091FPB4_CORBR_85066 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A091J2Z3_A0A091J2Z3_EGRGA_188379 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A093RYW4_A0A093RYW4_9PASS_328815 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A091VEQ4_A0A091VEQ4_NIPNI_128390 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A087QX62_A0A087QX62_APTFO_9233 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A091FY21_A0A091FY21_9AVES_55661 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A0A0A0R7_A0A0A0A0R7_CHAVO_50402 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A2I0M2F8_A0A2I0M2F8_COLLI_8932 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A093GHF4_A0A093GHF4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A091IDD5_A0A091IDD5_CALAN_9244 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A1S3KVP4_A0A1S3KVP4_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A1S3PVD3_A0A1S3PVD3_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A3Q0G7T1_A0A3Q0G7T1_ALLSI_38654 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A1V4K1T1_A0A1V4K1T1_PATFA_372326 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A2I4B6R1_A0A2I4B6R1_9TELE_52670 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A060YZG4_A0A060YZG4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A218UXN2_A0A218UXN2_9PASE_299123 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A226N9P8_A0A226N9P8_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A226P7U6_A0A226P7U6_COLVI_9014 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A2D0Q689_A0A2D0Q689_ICTPU_7998 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A2D0Q8X2_A0A2D0Q8X2_ICTPU_7998 are exactly identical! WARNING: Sequences tr_Q503Z8_Q503Z8_DANRE_7955 and tr_A0A2U9BDM1_A0A2U9BDM1_SCOMX_52904 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_Q9PU52_Q9PU52_CHICK_9031 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A3B3HMK5_A0A3B3HMK5_ORYLA_8090 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_H9G433_H9G433_ANOCA_28377 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_F7ERU9_F7ERU9_ORNAN_9258 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_F6R2X3_F6R2X3_MONDO_13616 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A3B5QZW1_A0A3B5QZW1_XIPMA_8083 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_I3JJC4_I3JJC4_ORENI_8128 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_H2T2H5_H2T2H5_TAKRU_31033 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_H2T2H6_H2T2H6_TAKRU_31033 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_H0UUW3_H0UUW3_CAVPO_10141 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_H3CP40_H3CP40_TETNG_99883 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_G3NTN7_G3NTN7_GASAC_69293 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_G3VFC7_G3VFC7_SARHA_9305 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_H0ZDV2_H0ZDV2_TAEGU_59729 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and sp_Q66IK1_IRX2_XENTR_8364 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_H3A057_H3A057_LATCH_7897 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_U3JRQ9_U3JRQ9_FICAL_59894 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_U3INP3_U3INP3_ANAPL_8839 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_W5KZJ6_W5KZJ6_ASTMX_7994 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_W5MQV2_W5MQV2_LEPOC_7918 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A087YF68_A0A087YF68_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A091E786_A0A091E786_FUKDA_885580 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A151NDL9_A0A151NDL9_ALLMI_8496 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A0Q3PN00_A0A0Q3PN00_AMAAE_12930 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A091FLA5_A0A091FLA5_CORBR_85066 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A093PM54_A0A093PM54_9PASS_328815 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A087R4R8_A0A087R4R8_APTFO_9233 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A093HHW9_A0A093HHW9_STRCA_441894 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A091FM94_A0A091FM94_9AVES_55661 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A0A0AN53_A0A0A0AN53_CHAVO_50402 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A2I0MXM4_A0A2I0MXM4_COLLI_8932 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A091HUV1_A0A091HUV1_CALAN_9244 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A1L8FX59_A0A1L8FX59_XENLA_8355 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A1V4J841_A0A1V4J841_PATFA_372326 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A2I4BPM0_A0A2I4BPM0_9TELE_52670 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A218VAI9_A0A218VAI9_9PASE_299123 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A226N918_A0A226N918_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A226P9W0_A0A226P9W0_COLVI_9014 are exactly identical! WARNING: Sequences tr_Q5I8Y1_Q5I8Y1_DANRE_7955 and tr_A0A2U3X430_A0A2U3X430_ODORO_9708 are exactly identical! WARNING: Sequences tr_Q6DEL0_Q6DEL0_DANRE_7955 and tr_A0A0N8JZ34_A0A0N8JZ34_9TELE_113540 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and sp_Q9YGS0_IRX4_CHICK_9031 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and sp_Q9QY61_IRX4_MOUSE_10090 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_M3Y8E4_M3Y8E4_MUSPF_9669 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_H2LKC3_H2LKC3_ORYLA_8090 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A2I3GYZ3_A0A2I3GYZ3_NOMLE_61853 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_G3IL70_G3IL70_CRIGR_10029 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_H2PF47_H2PF47_PONAB_9601 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_G1N5Q5_G1N5Q5_MELGA_9103 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_G1K8P7_G1K8P7_ANOCA_28377 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_E2RNN9_E2RNN9_CANLF_9615 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A2I3SBN5_A0A2I3SBN5_PANTR_9598 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_F7BC96_F7BC96_MONDO_13616 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_F6PKT7_F6PKT7_HORSE_9796 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_D3ZRI4_D3ZRI4_RAT_10116 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_M3ZSV0_M3ZSV0_XIPMA_8083 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_I3JJC2_I3JJC2_ORENI_8128 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_I3N349_I3N349_ICTTR_43179 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_H0XV79_H0XV79_OTOGA_30611 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_H2T3T3_H2T3T3_TAKRU_31033 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_H0VWQ8_H0VWQ8_CAVPO_10141 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and sp_P78413_IRX4_HUMAN_9606 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A1D5R417_A0A1D5R417_MACMU_9544 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_G5BPI6_G5BPI6_HETGA_10181 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_K7GER3_K7GER3_PELSI_13735 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_H3CP39_H3CP39_TETNG_99883 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_G3NTR9_G3NTR9_GASAC_69293 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_G3SLS3_G3SLS3_LOXAF_9785 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_G3X0F3_G3X0F3_SARHA_9305 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and sp_Q688D0_IRX4_XENTR_8364 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_F1S043_F1S043_PIG_9823 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_H3AEW6_H3AEW6_LATCH_7897 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_G1LWP2_G1LWP2_AILME_9646 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_G8F2L4_G8F2L4_MACFA_9541 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A4IF73_A4IF73_BOVIN_9913 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_L5KCD5_L5KCD5_PTEAL_9402 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_M3WY91_M3WY91_FELCA_9685 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_U3JRS2_U3JRS2_FICAL_59894 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A3B1JQE0_A0A3B1JQE0_ASTMX_7994 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_W5MQX4_W5MQX4_LEPOC_7918 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A087YF45_A0A087YF45_POEFO_48698 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A096NEE5_A0A096NEE5_PAPAN_9555 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A091E538_A0A091E538_FUKDA_885580 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A0D9RXQ0_A0A0D9RXQ0_CHLSB_60711 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A0P7WI26_A0A0P7WI26_9TELE_113540 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A0P7WWQ1_A0A0P7WWQ1_9TELE_113540 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A151NCV3_A0A151NCV3_ALLMI_8496 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A0Q3QKK8_A0A0Q3QKK8_AMAAE_12930 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A091F0Q3_A0A091F0Q3_CORBR_85066 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A093PTG9_A0A093PTG9_9PASS_328815 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A091W727_A0A091W727_NIPNI_128390 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A091G791_A0A091G791_9AVES_55661 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A2I0MXY0_A0A2I0MXY0_COLLI_8932 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A093GJJ6_A0A093GJJ6_DRYPU_118200 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A091IGV9_A0A091IGV9_CALAN_9244 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A1S3QLA3_A0A1S3QLA3_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A1S3QX17_A0A1S3QX17_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A1S3QYA5_A0A1S3QYA5_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A1S3QYC0_A0A1S3QYC0_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A1S3QYC8_A0A1S3QYC8_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A1S3QYU0_A0A1S3QYU0_SALSA_8030 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A1L8FRX8_A0A1L8FRX8_XENLA_8355 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A1L8FX45_A0A1L8FX45_XENLA_8355 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A1U7T8T8_A0A1U7T8T8_TARSY_1868482 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A1U8DEN0_A0A1U8DEN0_ALLSI_38654 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A3Q0GSQ8_A0A3Q0GSQ8_ALLSI_38654 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A1U8CLC6_A0A1U8CLC6_MESAU_10036 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A1V4J871_A0A1V4J871_PATFA_372326 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A2I4BPN1_A0A2I4BPN1_9TELE_52670 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A218VBN6_A0A218VBN6_9PASE_299123 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A226NFF2_A0A226NFF2_CALSU_9009 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A226PAR4_A0A226PAR4_COLVI_9014 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A2D0QPF9_A0A2D0QPF9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A2K5LNQ6_A0A2K5LNQ6_CERAT_9531 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A2K6B9E6_A0A2K6B9E6_MACNE_9545 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A2K5XFI1_A0A2K5XFI1_MANLE_9568 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A2R8ZH23_A0A2R8ZH23_PANPA_9597 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A2U3WR22_A0A2U3WR22_ODORO_9708 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A2U3YSE7_A0A2U3YSE7_LEPWE_9713 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A2U9AZ81_A0A2U9AZ81_SCOMX_52904 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A2Y9DSN6_A0A2Y9DSN6_TRIMA_127582 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A2Y9NP87_A0A2Y9NP87_DELLE_9749 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A2Y9SKI9_A0A2Y9SKI9_PHYCD_9755 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A384DJ11_A0A384DJ11_URSMA_29073 are exactly identical! WARNING: Sequences tr_Q6NZU4_Q6NZU4_DANRE_7955 and tr_A0A384AWR5_A0A384AWR5_BALAS_310752 are exactly identical! WARNING: Sequences tr_E1C7A8_E1C7A8_CHICK_9031 and tr_A0A0Q3PJ05_A0A0Q3PJ05_AMAAE_12930 are exactly identical! WARNING: Sequences sp_Q9ER75_IRX6_MOUSE_10090 and tr_G3H0R5_G3H0R5_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q9ER75_IRX6_MOUSE_10090 and tr_G3H0R7_G3H0R7_CRIGR_10029 are exactly identical! WARNING: Sequences sp_Q9ER75_IRX6_MOUSE_10090 and tr_D4A7R4_D4A7R4_RAT_10116 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_G1QKI4_G1QKI4_NOMLE_61853 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_G3SBL6_G3SBL6_GORGO_9595 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_B7P174_B7P174_IXOSC_6945 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_H2NQX1_H2NQX1_PONAB_9601 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_G1SL09_G1SL09_RABIT_9986 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_E2RP82_E2RP82_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_H2QB40_H2QB40_PANTR_9598 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_F7CUY6_F7CUY6_HORSE_9796 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_W5Q3S1_W5Q3S1_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_W5Q9G0_W5Q9G0_SHEEP_9940 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_I3MP67_I3MP67_ICTTR_43179 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_H0XWU2_H0XWU2_OTOGA_30611 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_H0VPA0_H0VPA0_CAVPO_10141 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and sp_P78412_IRX6_HUMAN_9606 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_F7HGW9_F7HGW9_MACMU_9544 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_G5BSD8_G5BSD8_HETGA_10181 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_G3TRZ1_G3TRZ1_LOXAF_9785 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_H2YT01_H2YT01_CIOSA_51511 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_H2Y2Q4_H2Y2Q4_CIOIN_7719 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_F7F8E6_F7F8E6_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_F7IA93_F7IA93_CALJA_9483 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_F1RF02_F1RF02_PIG_9823 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_G1MDA2_G1MDA2_AILME_9646 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_G7Q150_G7Q150_MACFA_9541 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_E1BPC7_E1BPC7_BOVIN_9913 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_L5KVC8_L5KVC8_PTEAL_9402 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A2I2UEJ0_A0A2I2UEJ0_FELCA_9685 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A096NIE9_A0A096NIE9_PAPAN_9555 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A091E5A3_A0A091E5A3_FUKDA_885580 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A0D9QZ08_A0A0D9QZ08_CHLSB_60711 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A087TQT7_A0A087TQT7_9ARAC_407821 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A1S3WNA9_A0A1S3WNA9_ERIEU_9365 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A1S3G510_A0A1S3G510_DIPOR_10020 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A1S3IMV6_A0A1S3IMV6_LINUN_7574 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A1U7U7B0_A0A1U7U7B0_TARSY_1868482 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A2K5MDV9_A0A2K5MDV9_CERAT_9531 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A2K6E0Y6_A0A2K6E0Y6_MACNE_9545 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A2K5ZLD5_A0A2K5ZLD5_MANLE_9568 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A2R8ZGD2_A0A2R8ZGD2_PANPA_9597 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A2U3Y5W1_A0A2U3Y5W1_LEPWE_9713 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A2Y9DBU1_A0A2Y9DBU1_TRIMA_127582 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A2Y9K9C2_A0A2Y9K9C2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A2Y9KSY2_A0A2Y9KSY2_ENHLU_391180 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A2Y9M0K0_A0A2Y9M0K0_DELLE_9749 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A2Y9EYC7_A0A2Y9EYC7_PHYCD_9755 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A384D1P7_A0A384D1P7_URSMA_29073 are exactly identical! WARNING: Sequences tr_M3XW98_M3XW98_MUSPF_9669 and tr_A0A383YXQ6_A0A383YXQ6_BALAS_310752 are exactly identical! WARNING: Sequences tr_M3Y8C6_M3Y8C6_MUSPF_9669 and tr_G3H0R4_G3H0R4_CRIGR_10029 are exactly identical! WARNING: Sequences tr_M3Y8C6_M3Y8C6_MUSPF_9669 and tr_G3I8J7_G3I8J7_CRIGR_10029 are exactly identical! WARNING: Sequences tr_M3Y8C6_M3Y8C6_MUSPF_9669 and tr_F1PMA0_F1PMA0_CANLF_9615 are exactly identical! WARNING: Sequences tr_M3Y8C6_M3Y8C6_MUSPF_9669 and tr_K7ED25_K7ED25_ORNAN_9258 are exactly identical! WARNING: Sequences tr_M3Y8C6_M3Y8C6_MUSPF_9669 and tr_D3ZNE0_D3ZNE0_RAT_10116 are exactly identical! WARNING: Sequences tr_M3Y8C6_M3Y8C6_MUSPF_9669 and tr_T1J2A5_T1J2A5_STRMM_126957 are exactly identical! WARNING: Sequences tr_M3Y8C6_M3Y8C6_MUSPF_9669 and tr_A0A194QW13_A0A194QW13_PAPMA_76193 are exactly identical! WARNING: Sequences tr_M3Y8C6_M3Y8C6_MUSPF_9669 and tr_A0A087TGH1_A0A087TGH1_9ARAC_407821 are exactly identical! WARNING: Sequences tr_M3Y8C6_M3Y8C6_MUSPF_9669 and tr_A0A1S3EXZ2_A0A1S3EXZ2_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A3B3I4Y6_A0A3B3I4Y6_ORYLA_8090 and tr_M4ADY8_M4ADY8_XIPMA_8083 are exactly identical! WARNING: Sequences tr_A0A3B3I4Y6_A0A3B3I4Y6_ORYLA_8090 and tr_I3KIB7_I3KIB7_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B3I4Y6_A0A3B3I4Y6_ORYLA_8090 and tr_H2T501_H2T501_TAKRU_31033 are exactly identical! WARNING: Sequences tr_A0A3B3I4Y6_A0A3B3I4Y6_ORYLA_8090 and tr_H3C4E5_H3C4E5_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A3B3I4Y6_A0A3B3I4Y6_ORYLA_8090 and tr_A0A087XLB0_A0A087XLB0_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2MH18_H2MH18_ORYLA_8090 and tr_M4AGQ6_M4AGQ6_XIPMA_8083 are exactly identical! WARNING: Sequences tr_H2MH18_H2MH18_ORYLA_8090 and tr_I3JLM0_I3JLM0_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2MH18_H2MH18_ORYLA_8090 and tr_Q4SIN4_Q4SIN4_TETNG_99883 are exactly identical! WARNING: Sequences tr_H2MH18_H2MH18_ORYLA_8090 and tr_A0A087XFW7_A0A087XFW7_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2MH18_H2MH18_ORYLA_8090 and tr_A0A2I4D963_A0A2I4D963_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2MH18_H2MH18_ORYLA_8090 and tr_A0A2U9BM61_A0A2U9BM61_SCOMX_52904 are exactly identical! WARNING: Sequences tr_H2MH33_H2MH33_ORYLA_8090 and tr_A0A3B5Q7K4_A0A3B5Q7K4_XIPMA_8083 are exactly identical! WARNING: Sequences tr_H2MH33_H2MH33_ORYLA_8090 and tr_I3JLM4_I3JLM4_ORENI_8128 are exactly identical! WARNING: Sequences tr_H2MH33_H2MH33_ORYLA_8090 and tr_G3P2R8_G3P2R8_GASAC_69293 are exactly identical! WARNING: Sequences tr_H2MH33_H2MH33_ORYLA_8090 and tr_A0A087XFH7_A0A087XFH7_POEFO_48698 are exactly identical! WARNING: Sequences tr_H2MH33_H2MH33_ORYLA_8090 and tr_A0A2I4CIT4_A0A2I4CIT4_9TELE_52670 are exactly identical! WARNING: Sequences tr_H2MH33_H2MH33_ORYLA_8090 and tr_A0A2U9BLP1_A0A2U9BLP1_SCOMX_52904 are exactly identical! WARNING: Sequences tr_G1P2G1_G1P2G1_MYOLU_59463 and tr_G1Q0N8_G1Q0N8_MYOLU_59463 are exactly identical! WARNING: Sequences tr_B7P177_B7P177_IXOSC_6945 and tr_A0A087SZ98_A0A087SZ98_9ARAC_407821 are exactly identical! WARNING: Sequences tr_F6Z3M5_F6Z3M5_MONDO_13616 and tr_G3WC97_G3WC97_SARHA_9305 are exactly identical! WARNING: Sequences tr_F6Z3M5_F6Z3M5_MONDO_13616 and tr_A0A2G8LET2_A0A2G8LET2_STIJA_307972 are exactly identical! WARNING: Sequences tr_A0A3B5RDZ9_A0A3B5RDZ9_XIPMA_8083 and tr_I3KQV9_I3KQV9_ORENI_8128 are exactly identical! WARNING: Sequences tr_A0A3B5RDZ9_A0A3B5RDZ9_XIPMA_8083 and tr_H3CR17_H3CR17_TETNG_99883 are exactly identical! WARNING: Sequences tr_A0A3B5RDZ9_A0A3B5RDZ9_XIPMA_8083 and tr_A0A096LZ03_A0A096LZ03_POEFO_48698 are exactly identical! WARNING: Sequences tr_A0A3B5RDZ9_A0A3B5RDZ9_XIPMA_8083 and tr_A0A2U9BL53_A0A2U9BL53_SCOMX_52904 are exactly identical! WARNING: Sequences tr_A0A088AU13_A0A088AU13_APIME_7460 and tr_A0A2A3EH79_A0A2A3EH79_APICC_94128 are exactly identical! WARNING: Sequences tr_H2TXW6_H2TXW6_TAKRU_31033 and tr_H3CV43_H3CV43_TETNG_99883 are exactly identical! WARNING: Sequences tr_K1Q4X5_K1Q4X5_CRAGI_29159 and tr_A0A210PF37_A0A210PF37_MIZYE_6573 are exactly identical! WARNING: Sequences tr_K1RA01_K1RA01_CRAGI_29159 and tr_K1RIX6_K1RIX6_CRAGI_29159 are exactly identical! WARNING: Sequences tr_K1RA01_K1RA01_CRAGI_29159 and tr_A0A0L8H6X1_A0A0L8H6X1_OCTBM_37653 are exactly identical! WARNING: Sequences tr_K1RA01_K1RA01_CRAGI_29159 and tr_A0A0L8IAG6_A0A0L8IAG6_OCTBM_37653 are exactly identical! WARNING: Sequences tr_K1RA01_K1RA01_CRAGI_29159 and tr_A0A1V9XIQ6_A0A1V9XIQ6_9ACAR_418985 are exactly identical! WARNING: Sequences tr_K1RA01_K1RA01_CRAGI_29159 and tr_A0A1V9XIU0_A0A1V9XIU0_9ACAR_418985 are exactly identical! WARNING: Sequences tr_K1RA01_K1RA01_CRAGI_29159 and tr_A0A210PF05_A0A210PF05_MIZYE_6573 are exactly identical! WARNING: Sequences tr_A0A0K0J6U5_A0A0K0J6U5_BRUMA_6279 and tr_A0A044S341_A0A044S341_ONCVO_6282 are exactly identical! WARNING: Sequences tr_A0A0K0J6U5_A0A0K0J6U5_BRUMA_6279 and tr_A0A0B2VEH8_A0A0B2VEH8_TOXCA_6265 are exactly identical! WARNING: Sequences tr_E5SUZ4_E5SUZ4_TRISP_6334 and tr_A0A0V0SCD3_A0A0V0SCD3_9BILA_6336 are exactly identical! WARNING: Sequences tr_E5SUZ4_E5SUZ4_TRISP_6334 and tr_A0A0V0V3X8_A0A0V0V3X8_9BILA_181606 are exactly identical! WARNING: Sequences tr_E5SUZ4_E5SUZ4_TRISP_6334 and tr_A0A0V0ZF78_A0A0V0ZF78_9BILA_990121 are exactly identical! WARNING: Sequences tr_E5SUZ4_E5SUZ4_TRISP_6334 and tr_A0A0V0XUP7_A0A0V0XUP7_TRIPS_6337 are exactly identical! WARNING: Sequences tr_E5SUZ4_E5SUZ4_TRISP_6334 and tr_A0A0V1MK96_A0A0V1MK96_9BILA_268474 are exactly identical! WARNING: Sequences tr_E5SUZ4_E5SUZ4_TRISP_6334 and tr_A0A0V1H2Q5_A0A0V1H2Q5_9BILA_268475 are exactly identical! WARNING: Sequences tr_B8API6_B8API6_ORYSI_39946 and tr_I1PEE3_I1PEE3_ORYGL_4538 are exactly identical! WARNING: Sequences tr_B8API6_B8API6_ORYSI_39946 and tr_A0A0D3FMG2_A0A0D3FMG2_9ORYZ_65489 are exactly identical! WARNING: Sequences tr_B8API6_B8API6_ORYSI_39946 and tr_Q5KQP1_Q5KQP1_ORYSJ_39947 are exactly identical! WARNING: Sequences tr_H2YSY1_H2YSY1_CIOSA_51511 and tr_Q4H3A8_Q4H3A8_CIOIN_7719 are exactly identical! WARNING: Sequences tr_H2ZGG1_H2ZGG1_CIOSA_51511 and tr_F7AUT5_F7AUT5_CIOIN_7719 are exactly identical! WARNING: Sequences tr_G0MFS0_G0MFS0_CAEBE_135651 and tr_G0PCT5_G0PCT5_CAEBE_135651 are exactly identical! WARNING: Sequences tr_E3MX02_E3MX02_CAERE_31234 and tr_A0A261BQD9_A0A261BQD9_9PELO_1503980 are exactly identical! WARNING: Sequences tr_A8X615_A8X615_CAEBR_6238 and tr_A0A2G5VG51_A0A2G5VG51_9PELO_1611254 are exactly identical! WARNING: Sequences tr_B3RVV1_B3RVV1_TRIAD_10228 and tr_A0A369S8I4_A0A369S8I4_9METZ_287889 are exactly identical! WARNING: Sequences tr_L5JSF4_L5JSF4_PTEAL_9402 and tr_A0A0D9RH54_A0A0D9RH54_CHLSB_60711 are exactly identical! WARNING: Sequences tr_L5JSF4_L5JSF4_PTEAL_9402 and tr_A0A0Q3NDV4_A0A0Q3NDV4_AMAAE_12930 are exactly identical! WARNING: Sequences tr_L5JSF4_L5JSF4_PTEAL_9402 and tr_A0A091F2G4_A0A091F2G4_CORBR_85066 are exactly identical! WARNING: Sequences tr_L5JSF4_L5JSF4_PTEAL_9402 and tr_A0A3Q0GKH2_A0A3Q0GKH2_ALLSI_38654 are exactly identical! WARNING: Sequences tr_L5JSF4_L5JSF4_PTEAL_9402 and tr_A0A2U3VA13_A0A2U3VA13_TURTR_9739 are exactly identical! WARNING: Sequences tr_R7UAD6_R7UAD6_CAPTE_283909 and tr_T1EIN2_T1EIN2_HELRO_6412 are exactly identical! WARNING: Sequences tr_R7UAD6_R7UAD6_CAPTE_283909 and tr_T1EJZ0_T1EJZ0_HELRO_6412 are exactly identical! WARNING: Sequences tr_A0A3B6HUH1_A0A3B6HUH1_WHEAT_4565 and tr_A0A3B6IM79_A0A3B6IM79_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A3B6HUH1_A0A3B6HUH1_WHEAT_4565 and tr_A0A3B6JHR2_A0A3B6JHR2_WHEAT_4565 are exactly identical! WARNING: Sequences tr_A0A016VDE8_A0A016VDE8_9BILA_53326 and tr_A0A0K0CT46_A0A0K0CT46_ANGCA_6313 are exactly identical! WARNING: Sequences tr_W9S8M2_W9S8M2_9ROSA_981085 and tr_A0A2C9UZL7_A0A2C9UZL7_MANES_3983 are exactly identical! WARNING: Sequences tr_W9S8M2_W9S8M2_9ROSA_981085 and tr_A0A2P5DVS5_A0A2P5DVS5_TREOI_63057 are exactly identical! WARNING: Sequences tr_A0A0K0F7F6_A0A0K0F7F6_STRVS_75913 and tr_A0A0K0EAI8_A0A0K0EAI8_STRER_6248 are exactly identical! WARNING: Sequences tr_A0A0K0F7F6_A0A0K0F7F6_STRVS_75913 and tr_A0A090LDP9_A0A090LDP9_STRRB_34506 are exactly identical! WARNING: Sequences tr_A0A0K0F7F6_A0A0K0F7F6_STRVS_75913 and tr_A0A0N5A4Z8_A0A0N5A4Z8_PARTI_131310 are exactly identical! WARNING: Sequences tr_A0A0K0F7F6_A0A0K0F7F6_STRVS_75913 and tr_A0A0N5B8H1_A0A0N5B8H1_STREA_174720 are exactly identical! WARNING: Sequences tr_A0A0R3WJ28_A0A0R3WJ28_HYDTA_6205 and tr_A0A0R3VSS2_A0A0R3VSS2_TAEAS_60517 are exactly identical! WARNING: Sequences tr_A0A0R3XCD6_A0A0R3XCD6_HYDTA_6205 and tr_A0A0R3VT99_A0A0R3VT99_TAEAS_60517 are exactly identical! WARNING: Sequences tr_A0A0Q3R680_A0A0Q3R680_AMAAE_12930 and tr_A0A226P8R5_A0A226P8R5_COLVI_9014 are exactly identical! WARNING: Sequences tr_A0A091E7N8_A0A091E7N8_CORBR_85066 and tr_A0A091VLJ5_A0A091VLJ5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A091E7N8_A0A091E7N8_CORBR_85066 and tr_A0A091G508_A0A091G508_9AVES_55661 are exactly identical! WARNING: Sequences tr_A0A091E7N8_A0A091E7N8_CORBR_85066 and tr_A0A093GNL4_A0A093GNL4_DRYPU_118200 are exactly identical! WARNING: Sequences tr_A0A091JGU3_A0A091JGU3_EGRGA_188379 and tr_A0A091VKV5_A0A091VKV5_NIPNI_128390 are exactly identical! WARNING: Sequences tr_A0A182ELM5_A0A182ELM5_ONCOC_42157 and tr_A0A182ERW1_A0A182ERW1_ONCOC_42157 are exactly identical! WARNING: Sequences tr_A0A1S2ZK69_A0A1S2ZK69_ERIEU_9365 and tr_A0A1S3EZB5_A0A1S3EZB5_DIPOR_10020 are exactly identical! WARNING: Sequences tr_A0A1S3KRV8_A0A1S3KRV8_SALSA_8030 and tr_A0A060WL68_A0A060WL68_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3KRV8_A0A1S3KRV8_SALSA_8030 and tr_A0A2D0T3R9_A0A2D0T3R9_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1S3KRV8_A0A1S3KRV8_SALSA_8030 and tr_A0A2D0T405_A0A2D0T405_ICTPU_7998 are exactly identical! WARNING: Sequences tr_A0A1S3LLU0_A0A1S3LLU0_SALSA_8030 and tr_A0A060YUM4_A0A060YUM4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3M449_A0A1S3M449_SALSA_8030 and tr_A0A1S3Q1W9_A0A1S3Q1W9_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3M449_A0A1S3M449_SALSA_8030 and tr_A0A060XC72_A0A060XC72_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3M449_A0A1S3M449_SALSA_8030 and tr_A0A060XST6_A0A060XST6_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3MGZ8_A0A1S3MGZ8_SALSA_8030 and tr_A0A060XDC1_A0A060XDC1_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3Q0E5_A0A1S3Q0E5_SALSA_8030 and tr_C0HAT6_C0HAT6_SALSA_8030 are exactly identical! WARNING: Sequences tr_A0A1S3Q0E5_A0A1S3Q0E5_SALSA_8030 and tr_A0A060XNS4_A0A060XNS4_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1S3Q0E5_A0A1S3Q0E5_SALSA_8030 and tr_A0A060Y549_A0A060Y549_ONCMY_8022 are exactly identical! WARNING: Sequences tr_A0A1U8JMR6_A0A1U8JMR6_GOSHI_3635 and tr_A0A1U8LMB4_A0A1U8LMB4_GOSHI_3635 are exactly identical! WARNING: Sequences tr_A0A1V9XIC9_A0A1V9XIC9_9ACAR_418985 and tr_A0A1V9XKQ3_A0A1V9XKQ3_9ACAR_418985 are exactly identical! WARNING: Sequences tr_A0A1V9XIC9_A0A1V9XIC9_9ACAR_418985 and tr_A0A2U3VLL7_A0A2U3VLL7_ODORO_9708 are exactly identical! WARNING: Duplicate sequences found: 782 NOTE: Reduced alignment (with duplicates and gap-only sites/taxa removed) NOTE: was saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P78411/3_mltree/P78411.raxml.reduced.phy Alignment comprises 1 partitions and 59 patterns Partition 0: noname Model: LG4X+R4 Alignment sites / patterns: 59 / 59 Gaps: 1.35 % Invariant sites: 1.69 % NOTE: Binary MSA file created: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P78411/3_mltree/P78411.raxml.rba Parallelization scheme autoconfig: 1 worker(s) x 1 thread(s) Parallel reduction/worker buffer size: 1 KB / 0 KB [00:00:00] Generating 20 random starting tree(s) with 999 taxa [00:00:00] Data distribution: max. partitions/sites/weight per thread: 1 / 59 / 4720 [00:00:00] Data distribution: max. searches per worker: 20 Starting ML tree search with 20 distinct starting trees [00:00:00 -38301.658810] Initial branch length optimization [00:00:01 -26173.911123] Model parameter optimization (eps = 10.000000) [00:01:05 -25661.644900] AUTODETECT spr round 1 (radius: 5) [00:02:24 -17397.721684] AUTODETECT spr round 2 (radius: 10) [00:04:00 -11772.178812] AUTODETECT spr round 3 (radius: 15) [00:05:39 -8740.654257] AUTODETECT spr round 4 (radius: 20) [00:07:15 -7848.482151] AUTODETECT spr round 5 (radius: 25) [00:09:07 -6942.726747] SPR radius for FAST iterations: 25 (autodetect) [00:09:07 -6942.726747] Model parameter optimization (eps = 3.000000) [00:09:22 -6910.176638] FAST spr round 1 (radius: 25) [00:11:01 -5693.680463] FAST spr round 2 (radius: 25) [00:12:38 -5519.704048] FAST spr round 3 (radius: 25) [00:14:12 -5467.690085] FAST spr round 4 (radius: 25) [00:15:43 -5461.639824] FAST spr round 5 (radius: 25) [00:17:13 -5461.639677] Model parameter optimization (eps = 1.000000) [00:17:19 -5460.854729] SLOW spr round 1 (radius: 5) [00:18:37 -5460.526475] SLOW spr round 2 (radius: 5) [00:19:55 -5460.525803] SLOW spr round 3 (radius: 10) [00:21:21 -5443.222725] SLOW spr round 4 (radius: 5) [00:22:39 -5443.222402] SLOW spr round 5 (radius: 10) [00:24:05 -5443.222363] SLOW spr round 6 (radius: 15) [00:25:37 -5443.053735] SLOW spr round 7 (radius: 5) [00:26:57 -5442.376061] SLOW spr round 8 (radius: 5) [00:28:14 -5442.347705] SLOW spr round 9 (radius: 10) [00:29:39 -5442.347372] SLOW spr round 10 (radius: 15) [00:31:11 -5442.240668] SLOW spr round 11 (radius: 5) [00:32:29 -5442.240636] SLOW spr round 12 (radius: 10) [00:33:54 -5442.240635] SLOW spr round 13 (radius: 15) [00:35:25 -5442.240634] SLOW spr round 14 (radius: 20) [00:37:02 -5442.240615] SLOW spr round 15 (radius: 25) [00:39:02 -5438.258387] SLOW spr round 16 (radius: 5) [00:40:25 -5436.224008] SLOW spr round 17 (radius: 5) [00:41:42 -5436.223748] SLOW spr round 18 (radius: 10) [00:43:06 -5435.507155] SLOW spr round 19 (radius: 5) [00:44:21 -5435.507155] SLOW spr round 20 (radius: 10) [00:45:45 -5435.507155] SLOW spr round 21 (radius: 15) [00:47:16 -5435.507155] SLOW spr round 22 (radius: 20) [00:48:56 -5431.013936] SLOW spr round 23 (radius: 5) [00:50:19 -5430.579634] SLOW spr round 24 (radius: 5) [00:51:34 -5430.579616] SLOW spr round 25 (radius: 10) [00:52:57 -5430.579615] SLOW spr round 26 (radius: 15) [00:54:29 -5426.254535] SLOW spr round 27 (radius: 5) [00:55:46 -5426.253138] SLOW spr round 28 (radius: 10) [00:57:09 -5426.253091] SLOW spr round 29 (radius: 15) [00:58:39 -5426.253074] SLOW spr round 30 (radius: 20) [01:00:15 -5426.253060] SLOW spr round 31 (radius: 25) [01:02:20 -5321.694135] SLOW spr round 32 (radius: 5) [01:03:43 -5294.938205] SLOW spr round 33 (radius: 5) [01:05:01 -5291.985434] SLOW spr round 34 (radius: 5) [01:06:17 -5291.985217] SLOW spr round 35 (radius: 10) [01:07:42 -5291.184659] SLOW spr round 36 (radius: 5) [01:08:58 -5291.184654] SLOW spr round 37 (radius: 10) [01:10:21 -5291.184654] SLOW spr round 38 (radius: 15) [01:11:51 -5291.184654] SLOW spr round 39 (radius: 20) [01:13:26 -5266.215879] SLOW spr round 40 (radius: 5) [01:14:44 -5266.215871] SLOW spr round 41 (radius: 10) [01:16:09 -5266.215871] SLOW spr round 42 (radius: 15) [01:17:39 -5266.215871] SLOW spr round 43 (radius: 20) [01:19:13 -5266.215871] SLOW spr round 44 (radius: 25) [01:20:58 -5265.552106] SLOW spr round 45 (radius: 5) [01:22:19 -5265.551953] SLOW spr round 46 (radius: 10) [01:23:44 -5265.551940] SLOW spr round 47 (radius: 15) [01:25:15 -5265.551937] SLOW spr round 48 (radius: 20) [01:26:49 -5265.551912] SLOW spr round 49 (radius: 25) [01:28:33 -5265.079661] SLOW spr round 50 (radius: 5) [01:29:55 -5264.016743] SLOW spr round 51 (radius: 5) [01:31:11 -5264.016722] SLOW spr round 52 (radius: 10) [01:32:37 -5260.368444] SLOW spr round 53 (radius: 5) [01:33:55 -5259.094445] SLOW spr round 54 (radius: 5) [01:35:10 -5259.091997] SLOW spr round 55 (radius: 10) [01:36:33 -5259.091537] SLOW spr round 56 (radius: 15) [01:38:03 -5259.091442] SLOW spr round 57 (radius: 20) [01:39:40 -5259.091422] SLOW spr round 58 (radius: 25) [01:41:37 -5259.091417] Model parameter optimization (eps = 0.100000) [01:41:48] ML tree search #1, logLikelihood: -5252.928338 [01:41:48 -38224.126028] Initial branch length optimization [01:41:49 -26004.779063] Model parameter optimization (eps = 10.000000) [01:42:43 -25464.141574] AUTODETECT spr round 1 (radius: 5) [01:44:04 -17350.240097] AUTODETECT spr round 2 (radius: 10) [01:45:41 -12190.359453] AUTODETECT spr round 3 (radius: 15) [01:47:18 -9647.763260] AUTODETECT spr round 4 (radius: 20) [01:48:57 -8471.684895] AUTODETECT spr round 5 (radius: 25) [01:50:47 -8062.102235] SPR radius for FAST iterations: 25 (autodetect) [01:50:47 -8062.102235] Model parameter optimization (eps = 3.000000) [01:51:02 -8026.018010] FAST spr round 1 (radius: 25) [01:52:37 -6781.185593] FAST spr round 2 (radius: 25) [01:54:04 -6671.971618] FAST spr round 3 (radius: 25) [01:55:30 -6660.008035] FAST spr round 4 (radius: 25) [01:56:54 -6660.007871] Model parameter optimization (eps = 1.000000) [01:57:01 -6658.428242] SLOW spr round 1 (radius: 5) [01:58:20 -6657.711592] SLOW spr round 2 (radius: 5) [01:59:38 -6654.972676] SLOW spr round 3 (radius: 5) [02:00:56 -6654.972571] SLOW spr round 4 (radius: 10) [02:02:23 -6652.442605] SLOW spr round 5 (radius: 5) [02:03:44 -6650.240692] SLOW spr round 6 (radius: 5) [02:05:03 -6650.240535] SLOW spr round 7 (radius: 10) [02:06:27 -6650.240496] SLOW spr round 8 (radius: 15) [02:07:55 -6649.979997] SLOW spr round 9 (radius: 5) [02:09:17 -6649.669058] SLOW spr round 10 (radius: 5) [02:10:35 -6649.668962] SLOW spr round 11 (radius: 10) [02:11:57 -6649.668925] SLOW spr round 12 (radius: 15) [02:13:26 -6649.668889] SLOW spr round 13 (radius: 20) [02:15:19 -6570.682643] SLOW spr round 14 (radius: 5) [02:16:43 -6562.938111] SLOW spr round 15 (radius: 5) [02:18:00 -6562.937095] SLOW spr round 16 (radius: 10) [02:19:24 -6561.040726] SLOW spr round 17 (radius: 5) [02:20:44 -6561.019197] SLOW spr round 18 (radius: 10) [02:22:08 -6561.019124] SLOW spr round 19 (radius: 15) [02:23:38 -6559.989304] SLOW spr round 20 (radius: 5) [02:25:01 -6554.283162] SLOW spr round 21 (radius: 5) [02:26:18 -6554.283077] SLOW spr round 22 (radius: 10) [02:27:42 -6554.283048] SLOW spr round 23 (radius: 15) [02:29:11 -6554.283019] SLOW spr round 24 (radius: 20) [02:30:58 -6547.613313] SLOW spr round 25 (radius: 5) [02:32:21 -6544.877499] SLOW spr round 26 (radius: 5) [02:33:39 -6544.877428] SLOW spr round 27 (radius: 10) [02:35:02 -6544.877399] SLOW spr round 28 (radius: 15) [02:36:30 -6544.877371] SLOW spr round 29 (radius: 20) [02:38:19 -6544.877343] SLOW spr round 30 (radius: 25) [02:40:27 -6541.304233] SLOW spr round 31 (radius: 5) [02:41:50 -6541.304204] SLOW spr round 32 (radius: 10) [02:43:13 -6541.304177] SLOW spr round 33 (radius: 15) [02:44:42 -6541.304067] SLOW spr round 34 (radius: 20) [02:46:32 -6541.304041] SLOW spr round 35 (radius: 25) [02:48:39 -6541.304014] Model parameter optimization (eps = 0.100000) [02:48:42] ML tree search #2, logLikelihood: -6541.294782 [02:48:42 -38676.081378] Initial branch length optimization [02:48:43 -26512.264530] Model parameter optimization (eps = 10.000000) [02:49:56 -25960.754268] AUTODETECT spr round 1 (radius: 5) [02:51:15 -17525.697256] AUTODETECT spr round 2 (radius: 10) [02:52:49 -11520.656953] AUTODETECT spr round 3 (radius: 15) [02:54:31 -8708.445997] AUTODETECT spr round 4 (radius: 20) [02:56:09 -7178.552500] AUTODETECT spr round 5 (radius: 25) [02:57:50 -6843.991857] SPR radius for FAST iterations: 25 (autodetect) [02:57:50 -6843.991857] Model parameter optimization (eps = 3.000000) [02:58:07 -6789.833792] FAST spr round 1 (radius: 25) [02:59:47 -5940.241235] FAST spr round 2 (radius: 25) [03:01:25 -5834.529691] FAST spr round 3 (radius: 25) [03:02:57 -5789.173269] FAST spr round 4 (radius: 25) [03:04:27 -5789.173175] Model parameter optimization (eps = 1.000000) [03:04:33 -5788.264234] SLOW spr round 1 (radius: 5) [03:05:54 -5780.605502] SLOW spr round 2 (radius: 5) [03:07:13 -5780.601405] SLOW spr round 3 (radius: 10) [03:08:40 -5780.600918] SLOW spr round 4 (radius: 15) [03:10:13 -5748.239052] SLOW spr round 5 (radius: 5) [03:11:36 -5703.201065] SLOW spr round 6 (radius: 5) [03:12:55 -5703.200948] SLOW spr round 7 (radius: 10) [03:14:23 -5703.200926] SLOW spr round 8 (radius: 15) [03:15:54 -5703.200912] SLOW spr round 9 (radius: 20) [03:17:36 -5699.212103] SLOW spr round 10 (radius: 5) [03:18:58 -5699.211971] SLOW spr round 11 (radius: 10) [03:20:25 -5699.211961] SLOW spr round 12 (radius: 15) [03:21:55 -5699.211953] SLOW spr round 13 (radius: 20) [03:23:34 -5694.641027] SLOW spr round 14 (radius: 5) [03:24:57 -5694.640910] SLOW spr round 15 (radius: 10) [03:26:25 -5694.094907] SLOW spr round 16 (radius: 5) [03:27:45 -5692.977516] SLOW spr round 17 (radius: 5) [03:29:03 -5692.976609] SLOW spr round 18 (radius: 10) [03:30:29 -5692.806946] SLOW spr round 19 (radius: 5) [03:31:47 -5692.806724] SLOW spr round 20 (radius: 10) [03:33:13 -5692.806702] SLOW spr round 21 (radius: 15) [03:34:44 -5692.806684] SLOW spr round 22 (radius: 20) [03:36:22 -5692.806666] SLOW spr round 23 (radius: 25) [03:38:25 -5683.750103] SLOW spr round 24 (radius: 5) [03:39:49 -5682.708957] SLOW spr round 25 (radius: 5) [03:41:06 -5682.708936] SLOW spr round 26 (radius: 10) [03:42:32 -5682.708935] SLOW spr round 27 (radius: 15) [03:44:05 -5680.565078] SLOW spr round 28 (radius: 5) [03:45:25 -5680.565077] SLOW spr round 29 (radius: 10) [03:46:53 -5680.565076] SLOW spr round 30 (radius: 15) [03:48:25 -5680.565061] SLOW spr round 31 (radius: 20) [03:50:04 -5680.565060] SLOW spr round 32 (radius: 25) [03:52:09 -5680.565060] Model parameter optimization (eps = 0.100000) [03:52:13] ML tree search #3, logLikelihood: -5680.540130 [03:52:13 -38129.383063] Initial branch length optimization [03:52:14 -26015.724513] Model parameter optimization (eps = 10.000000) [03:53:25 -25491.606069] AUTODETECT spr round 1 (radius: 5) [03:54:45 -16797.573375] AUTODETECT spr round 2 (radius: 10) [03:56:20 -11988.573862] AUTODETECT spr round 3 (radius: 15) [03:57:59 -9109.693930] AUTODETECT spr round 4 (radius: 20) [03:59:36 -8020.663041] AUTODETECT spr round 5 (radius: 25) [04:01:20 -7467.756021] SPR radius for FAST iterations: 25 (autodetect) [04:01:20 -7467.756021] Model parameter optimization (eps = 3.000000) [04:01:40 -7433.709682] FAST spr round 1 (radius: 25) [04:03:21 -5918.216897] FAST spr round 2 (radius: 25) [04:05:00 -5734.051742] FAST spr round 3 (radius: 25) [04:06:37 -5696.566576] FAST spr round 4 (radius: 25) [04:08:12 -5693.403679] FAST spr round 5 (radius: 25) [04:09:45 -5693.403615] Model parameter optimization (eps = 1.000000) [04:09:57 -5687.884228] SLOW spr round 1 (radius: 5) [04:11:16 -5686.800245] SLOW spr round 2 (radius: 5) [04:12:34 -5686.594274] SLOW spr round 3 (radius: 5) [04:13:52 -5686.593323] SLOW spr round 4 (radius: 10) [04:15:20 -5685.302816] SLOW spr round 5 (radius: 5) [04:16:39 -5684.215479] SLOW spr round 6 (radius: 5) [04:17:57 -5683.198120] SLOW spr round 7 (radius: 5) [04:19:14 -5683.196621] SLOW spr round 8 (radius: 10) [04:20:41 -5683.196535] SLOW spr round 9 (radius: 15) [04:22:17 -5677.742478] SLOW spr round 10 (radius: 5) [04:23:39 -5664.543198] SLOW spr round 11 (radius: 5) [04:24:57 -5664.543153] SLOW spr round 12 (radius: 10) [04:26:23 -5664.543152] SLOW spr round 13 (radius: 15) [04:27:58 -5662.831947] SLOW spr round 14 (radius: 5) [04:29:17 -5662.831945] SLOW spr round 15 (radius: 10) [04:30:43 -5662.831944] SLOW spr round 16 (radius: 15) [04:32:16 -5662.831944] SLOW spr round 17 (radius: 20) [04:33:57 -5662.831944] SLOW spr round 18 (radius: 25) [04:36:03 -5625.147766] SLOW spr round 19 (radius: 5) [04:37:28 -5368.533828] SLOW spr round 20 (radius: 5) [04:38:48 -5336.440958] SLOW spr round 21 (radius: 5) [04:40:07 -5336.439684] SLOW spr round 22 (radius: 10) [04:41:33 -5336.129096] SLOW spr round 23 (radius: 5) [04:42:51 -5336.128525] SLOW spr round 24 (radius: 10) [04:44:17 -5336.128356] SLOW spr round 25 (radius: 15) [04:45:49 -5336.128229] SLOW spr round 26 (radius: 20) [04:47:26 -5336.128110] SLOW spr round 27 (radius: 25) [04:49:23 -5335.454754] SLOW spr round 28 (radius: 5) [04:50:46 -5311.270457] SLOW spr round 29 (radius: 5) [04:52:03 -5311.270346] SLOW spr round 30 (radius: 10) [04:53:28 -5311.270239] SLOW spr round 31 (radius: 15) [04:55:00 -5311.270135] SLOW spr round 32 (radius: 20) [04:56:38 -5311.270034] SLOW spr round 33 (radius: 25) [04:58:34 -5309.335982] SLOW spr round 34 (radius: 5) [04:59:57 -5307.493359] SLOW spr round 35 (radius: 5) [05:01:14 -5307.440007] SLOW spr round 36 (radius: 10) [05:02:42 -5307.439631] SLOW spr round 37 (radius: 15) [05:04:16 -5307.439607] SLOW spr round 38 (radius: 20) [05:05:56 -5307.439605] SLOW spr round 39 (radius: 25) [05:07:56 -5307.439604] Model parameter optimization (eps = 0.100000) [05:08:03] ML tree search #4, logLikelihood: -5307.311949 [05:08:03 -38280.122066] Initial branch length optimization [05:08:04 -26238.486711] Model parameter optimization (eps = 10.000000) [05:09:04 -25957.963757] AUTODETECT spr round 1 (radius: 5) [05:10:23 -16411.876649] AUTODETECT spr round 2 (radius: 10) [05:11:55 -11252.751983] AUTODETECT spr round 3 (radius: 15) [05:13:28 -8499.224311] AUTODETECT spr round 4 (radius: 20) [05:15:11 -7519.994434] AUTODETECT spr round 5 (radius: 25) [05:17:05 -7104.146212] SPR radius for FAST iterations: 25 (autodetect) [05:17:05 -7104.146212] Model parameter optimization (eps = 3.000000) [05:17:23 -7053.499263] FAST spr round 1 (radius: 25) [05:19:04 -6316.490085] FAST spr round 2 (radius: 25) [05:20:43 -6261.792950] FAST spr round 3 (radius: 25) [05:22:18 -6255.554767] FAST spr round 4 (radius: 25) [05:23:51 -6255.551832] Model parameter optimization (eps = 1.000000) [05:23:57 -6255.390907] SLOW spr round 1 (radius: 5) [05:25:18 -6254.565936] SLOW spr round 2 (radius: 5) [05:26:36 -6254.508576] SLOW spr round 3 (radius: 10) [05:28:02 -6254.508279] SLOW spr round 4 (radius: 15) [05:29:36 -6244.475795] SLOW spr round 5 (radius: 5) [05:30:57 -6244.077299] SLOW spr round 6 (radius: 5) [05:32:14 -6244.077056] SLOW spr round 7 (radius: 10) [05:33:41 -6244.077011] SLOW spr round 8 (radius: 15) [05:35:17 -6244.076986] SLOW spr round 9 (radius: 20) [05:37:16 -6217.446178] SLOW spr round 10 (radius: 5) [05:38:43 -6168.184216] SLOW spr round 11 (radius: 5) [05:40:06 -6143.807584] SLOW spr round 12 (radius: 5) [05:41:28 -6141.886708] SLOW spr round 13 (radius: 5) [05:42:50 -6141.886207] SLOW spr round 14 (radius: 10) [05:44:18 -6141.886170] SLOW spr round 15 (radius: 15) [05:45:54 -6141.886139] SLOW spr round 16 (radius: 20) [05:47:37 -6141.886112] SLOW spr round 17 (radius: 25) [05:49:56 -6072.011678] SLOW spr round 18 (radius: 5) [05:51:24 -6033.587671] SLOW spr round 19 (radius: 5) [05:52:44 -6033.584577] SLOW spr round 20 (radius: 10) [05:54:12 -6031.061817] SLOW spr round 21 (radius: 5) [05:55:32 -6031.060696] SLOW spr round 22 (radius: 10) [05:56:59 -6031.059737] SLOW spr round 23 (radius: 15) [05:58:34 -6031.058915] SLOW spr round 24 (radius: 20) [06:00:14 -6030.012531] SLOW spr round 25 (radius: 5) [06:01:38 -6030.012531] SLOW spr round 26 (radius: 10) [06:03:06 -6029.664677] SLOW spr round 27 (radius: 5) [06:04:26 -6029.664658] SLOW spr round 28 (radius: 10) [06:05:54 -6029.664590] SLOW spr round 29 (radius: 15) [06:07:28 -6029.664440] SLOW spr round 30 (radius: 20) [06:09:09 -6029.664440] SLOW spr round 31 (radius: 25) [06:11:17 -6025.607475] SLOW spr round 32 (radius: 5) [06:12:41 -6025.607230] SLOW spr round 33 (radius: 10) [06:14:09 -6025.607225] SLOW spr round 34 (radius: 15) [06:15:43 -6025.607225] SLOW spr round 35 (radius: 20) [06:17:25 -6025.607225] SLOW spr round 36 (radius: 25) [06:19:33 -6025.607225] Model parameter optimization (eps = 0.100000) [06:19:45] ML tree search #5, logLikelihood: -6023.223613 [06:19:45 -37877.644179] Initial branch length optimization [06:19:46 -26022.990879] Model parameter optimization (eps = 10.000000) [06:20:48 -25509.148636] AUTODETECT spr round 1 (radius: 5) [06:22:11 -17932.472757] AUTODETECT spr round 2 (radius: 10) [06:23:51 -11910.617999] AUTODETECT spr round 3 (radius: 15) [06:25:59 -9096.334156] AUTODETECT spr round 4 (radius: 20) [06:27:45 -7857.440909] AUTODETECT spr round 5 (radius: 25) [06:29:41 -6691.575860] SPR radius for FAST iterations: 25 (autodetect) [06:29:41 -6691.575860] Model parameter optimization (eps = 3.000000) [06:29:59 -6641.491582] FAST spr round 1 (radius: 25) [06:31:45 -5691.027792] FAST spr round 2 (radius: 25) [06:33:24 -5651.197224] FAST spr round 3 (radius: 25) [06:35:00 -5649.074538] FAST spr round 4 (radius: 25) [06:36:35 -5649.061860] Model parameter optimization (eps = 1.000000) [06:36:43 -5647.940469] SLOW spr round 1 (radius: 5) [06:38:06 -5647.590383] SLOW spr round 2 (radius: 5) [06:39:26 -5647.589170] SLOW spr round 3 (radius: 10) [06:40:56 -5647.588296] SLOW spr round 4 (radius: 15) [06:42:34 -5635.300464] SLOW spr round 5 (radius: 5) [06:43:58 -5622.410722] SLOW spr round 6 (radius: 5) [06:45:20 -5621.107708] SLOW spr round 7 (radius: 5) [06:46:41 -5621.106821] SLOW spr round 8 (radius: 10) [06:48:12 -5621.106307] SLOW spr round 9 (radius: 15) [06:49:52 -5621.106235] SLOW spr round 10 (radius: 20) [06:51:32 -5621.106174] SLOW spr round 11 (radius: 25) [06:53:33 -5610.413204] SLOW spr round 12 (radius: 5) [06:55:00 -5566.952370] SLOW spr round 13 (radius: 5) [06:56:22 -5545.070416] SLOW spr round 14 (radius: 5) [06:57:43 -5545.067636] SLOW spr round 15 (radius: 10) [06:59:12 -5544.852663] SLOW spr round 16 (radius: 5) [07:00:32 -5531.701787] SLOW spr round 17 (radius: 5) [07:01:50 -5531.701747] SLOW spr round 18 (radius: 10) [07:03:18 -5531.701661] SLOW spr round 19 (radius: 15) [07:04:53 -5531.701640] SLOW spr round 20 (radius: 20) [07:06:30 -5531.601743] SLOW spr round 21 (radius: 25) [07:08:32 -5472.008306] SLOW spr round 22 (radius: 5) [07:10:00 -5356.484832] SLOW spr round 23 (radius: 5) [07:11:24 -5329.950242] SLOW spr round 24 (radius: 5) [07:12:47 -5322.531183] SLOW spr round 25 (radius: 5) [07:14:10 -5322.400069] SLOW spr round 26 (radius: 5) [07:15:32 -5322.399994] SLOW spr round 27 (radius: 10) [07:17:04 -5322.399905] SLOW spr round 28 (radius: 15) [07:18:43 -5322.399814] SLOW spr round 29 (radius: 20) [07:20:24 -5320.056415] SLOW spr round 30 (radius: 5) [07:21:49 -5319.019093] SLOW spr round 31 (radius: 5) [07:23:11 -5319.019082] SLOW spr round 32 (radius: 10) [07:24:42 -5319.019077] SLOW spr round 33 (radius: 15) [07:26:19 -5319.019068] SLOW spr round 34 (radius: 20) [07:27:58 -5319.019064] SLOW spr round 35 (radius: 25) [07:30:02 -5319.019053] Model parameter optimization (eps = 0.100000) [07:30:10] ML tree search #6, logLikelihood: -5318.457140 [07:30:10 -38305.121350] Initial branch length optimization [07:30:11 -26104.225339] Model parameter optimization (eps = 10.000000) [07:31:23 -25577.837998] AUTODETECT spr round 1 (radius: 5) [07:32:45 -17723.071828] AUTODETECT spr round 2 (radius: 10) [07:34:22 -11516.101962] AUTODETECT spr round 3 (radius: 15) [07:36:02 -9081.775385] AUTODETECT spr round 4 (radius: 20) [07:37:38 -7658.944532] AUTODETECT spr round 5 (radius: 25) [07:39:28 -7007.951843] SPR radius for FAST iterations: 25 (autodetect) [07:39:28 -7007.951843] Model parameter optimization (eps = 3.000000) [07:39:47 -6963.255519] FAST spr round 1 (radius: 25) [07:41:27 -5968.802235] FAST spr round 2 (radius: 25) [07:43:03 -5922.813109] FAST spr round 3 (radius: 25) [07:44:37 -5834.760801] FAST spr round 4 (radius: 25) [07:46:09 -5832.768414] FAST spr round 5 (radius: 25) [07:47:40 -5832.768353] Model parameter optimization (eps = 1.000000) [07:47:50 -5830.471566] SLOW spr round 1 (radius: 5) [07:49:13 -5826.879140] SLOW spr round 2 (radius: 5) [07:50:35 -5825.741775] SLOW spr round 3 (radius: 5) [07:51:56 -5825.212751] SLOW spr round 4 (radius: 5) [07:53:17 -5825.211717] SLOW spr round 5 (radius: 10) [07:54:44 -5794.653784] SLOW spr round 6 (radius: 5) [07:56:06 -5793.493556] SLOW spr round 7 (radius: 5) [07:57:26 -5793.003516] SLOW spr round 8 (radius: 5) [07:58:46 -5793.003510] SLOW spr round 9 (radius: 10) [08:00:12 -5793.003508] SLOW spr round 10 (radius: 15) [08:01:45 -5788.137088] SLOW spr round 11 (radius: 5) [08:03:11 -5786.083259] SLOW spr round 12 (radius: 5) [08:04:32 -5786.080097] SLOW spr round 13 (radius: 10) [08:05:59 -5786.079989] SLOW spr round 14 (radius: 15) [08:07:33 -5785.563706] SLOW spr round 15 (radius: 5) [08:08:56 -5785.562771] SLOW spr round 16 (radius: 10) [08:10:24 -5774.272353] SLOW spr round 17 (radius: 5) [08:11:45 -5766.295716] SLOW spr round 18 (radius: 5) [08:13:06 -5766.295690] SLOW spr round 19 (radius: 10) [08:14:33 -5766.295684] SLOW spr round 20 (radius: 15) [08:16:05 -5766.295678] SLOW spr round 21 (radius: 20) [08:17:50 -5766.295675] SLOW spr round 22 (radius: 25) [08:20:01 -5756.966092] SLOW spr round 23 (radius: 5) [08:21:27 -5756.964782] SLOW spr round 24 (radius: 10) [08:22:55 -5756.964780] SLOW spr round 25 (radius: 15) [08:24:26 -5756.964779] SLOW spr round 26 (radius: 20) [08:26:13 -5756.964777] SLOW spr round 27 (radius: 25) [08:28:20 -5756.964776] Model parameter optimization (eps = 0.100000) [08:28:29] ML tree search #7, logLikelihood: -5756.345875 [08:28:29 -38281.924520] Initial branch length optimization [08:28:30 -26096.403328] Model parameter optimization (eps = 10.000000) [08:29:29 -25593.429410] AUTODETECT spr round 1 (radius: 5) [08:30:50 -16781.880919] AUTODETECT spr round 2 (radius: 10) [08:32:26 -11735.067457] AUTODETECT spr round 3 (radius: 15) [08:34:05 -9042.941197] AUTODETECT spr round 4 (radius: 20) [08:35:50 -7899.472713] AUTODETECT spr round 5 (radius: 25) [08:37:39 -7444.338654] SPR radius for FAST iterations: 25 (autodetect) [08:37:39 -7444.338654] Model parameter optimization (eps = 3.000000) [08:37:52 -7375.262007] FAST spr round 1 (radius: 25) [08:39:39 -6459.234661] FAST spr round 2 (radius: 25) [08:41:20 -6369.180256] FAST spr round 3 (radius: 25) [08:42:55 -6363.370151] FAST spr round 4 (radius: 25) [08:44:29 -6363.369903] Model parameter optimization (eps = 1.000000) [08:44:44 -6361.545273] SLOW spr round 1 (radius: 5) [08:46:04 -6361.248598] SLOW spr round 2 (radius: 5) [08:47:23 -6361.248302] SLOW spr round 3 (radius: 10) [08:48:52 -6361.248220] SLOW spr round 4 (radius: 15) [08:50:29 -6358.876963] SLOW spr round 5 (radius: 5) [08:51:51 -6357.144902] SLOW spr round 6 (radius: 5) [08:53:12 -6357.072606] SLOW spr round 7 (radius: 10) [08:54:40 -6346.999198] SLOW spr round 8 (radius: 5) [08:55:59 -6346.999143] SLOW spr round 9 (radius: 10) [08:57:28 -6346.668317] SLOW spr round 10 (radius: 5) [08:58:46 -6346.645770] SLOW spr round 11 (radius: 10) [09:00:14 -6346.645675] SLOW spr round 12 (radius: 15) [09:01:51 -6327.476782] SLOW spr round 13 (radius: 5) [09:03:13 -6314.975908] SLOW spr round 14 (radius: 5) [09:04:33 -6314.973698] SLOW spr round 15 (radius: 10) [09:06:03 -6314.973679] SLOW spr round 16 (radius: 15) [09:07:41 -6314.973660] SLOW spr round 17 (radius: 20) [09:09:35 -6247.371044] SLOW spr round 18 (radius: 5) [09:11:01 -6170.231023] SLOW spr round 19 (radius: 5) [09:12:23 -6168.714268] SLOW spr round 20 (radius: 5) [09:13:42 -6168.633424] SLOW spr round 21 (radius: 10) [09:15:11 -6131.222948] SLOW spr round 22 (radius: 5) [09:16:30 -6130.388917] SLOW spr round 23 (radius: 5) [09:17:48 -6130.388894] SLOW spr round 24 (radius: 10) [09:19:16 -6130.388851] SLOW spr round 25 (radius: 15) [09:20:52 -6130.388829] SLOW spr round 26 (radius: 20) [09:22:35 -6105.650831] SLOW spr round 27 (radius: 5) [09:23:58 -6105.650744] SLOW spr round 28 (radius: 10) [09:25:27 -6105.650722] SLOW spr round 29 (radius: 15) [09:27:04 -6105.650699] SLOW spr round 30 (radius: 20) [09:28:46 -6104.494290] SLOW spr round 31 (radius: 5) [09:30:08 -6104.494265] SLOW spr round 32 (radius: 10) [09:31:36 -6104.494242] SLOW spr round 33 (radius: 15) [09:33:11 -6104.494220] SLOW spr round 34 (radius: 20) [09:34:53 -6104.494197] SLOW spr round 35 (radius: 25) [09:36:59 -6095.183069] SLOW spr round 36 (radius: 5) [09:38:23 -6095.182788] SLOW spr round 37 (radius: 10) [09:39:51 -6095.182764] SLOW spr round 38 (radius: 15) [09:41:26 -6095.182741] SLOW spr round 39 (radius: 20) [09:43:10 -6014.787494] SLOW spr round 40 (radius: 5) [09:44:34 -6011.195534] SLOW spr round 41 (radius: 5) [09:45:54 -6006.230660] SLOW spr round 42 (radius: 5) [09:47:12 -6006.229659] SLOW spr round 43 (radius: 10) [09:48:40 -6006.229447] SLOW spr round 44 (radius: 15) [09:50:15 -6006.229348] SLOW spr round 45 (radius: 20) [09:51:58 -5999.804348] SLOW spr round 46 (radius: 5) [09:53:21 -5973.142858] SLOW spr round 47 (radius: 5) [09:54:40 -5973.142692] SLOW spr round 48 (radius: 10) [09:56:07 -5973.142647] SLOW spr round 49 (radius: 15) [09:57:41 -5973.142610] SLOW spr round 50 (radius: 20) [09:59:21 -5973.142579] SLOW spr round 51 (radius: 25) [10:01:26 -5928.558100] SLOW spr round 52 (radius: 5) [10:02:51 -5851.329349] SLOW spr round 53 (radius: 5) [10:04:10 -5841.901424] SLOW spr round 54 (radius: 5) [10:05:27 -5841.901397] SLOW spr round 55 (radius: 10) [10:06:54 -5841.901375] SLOW spr round 56 (radius: 15) [10:08:30 -5838.896290] SLOW spr round 57 (radius: 5) [10:09:49 -5838.889154] SLOW spr round 58 (radius: 10) [10:11:18 -5838.889089] SLOW spr round 59 (radius: 15) [10:12:53 -5838.888968] SLOW spr round 60 (radius: 20) [10:14:34 -5838.888930] SLOW spr round 61 (radius: 25) [10:16:26 -5838.888898] Model parameter optimization (eps = 0.100000) [10:16:32] ML tree search #8, logLikelihood: -5838.723115 [10:16:32 -38643.910110] Initial branch length optimization [10:16:33 -26373.587729] Model parameter optimization (eps = 10.000000) [10:17:29 -25868.172395] AUTODETECT spr round 1 (radius: 5) [10:18:51 -17706.474885] AUTODETECT spr round 2 (radius: 10) [10:20:32 -11908.517666] AUTODETECT spr round 3 (radius: 15) [10:22:13 -8410.466620] AUTODETECT spr round 4 (radius: 20) [10:23:52 -7633.090017] AUTODETECT spr round 5 (radius: 25) [10:25:45 -7076.318003] SPR radius for FAST iterations: 25 (autodetect) [10:25:45 -7076.318003] Model parameter optimization (eps = 3.000000) [10:26:02 -7042.254766] FAST spr round 1 (radius: 25) [10:27:46 -5905.878405] FAST spr round 2 (radius: 25) [10:29:27 -5742.907152] FAST spr round 3 (radius: 25) [10:31:03 -5738.123271] FAST spr round 4 (radius: 25) [10:32:38 -5737.176792] FAST spr round 5 (radius: 25) [10:34:10 -5736.794740] FAST spr round 6 (radius: 25) [10:35:43 -5714.534521] FAST spr round 7 (radius: 25) [10:37:15 -5714.532823] Model parameter optimization (eps = 1.000000) [10:37:29 -5700.974863] SLOW spr round 1 (radius: 5) [10:38:50 -5695.318265] SLOW spr round 2 (radius: 5) [10:40:12 -5694.261123] SLOW spr round 3 (radius: 5) [10:41:32 -5694.258278] SLOW spr round 4 (radius: 10) [10:43:03 -5691.306991] SLOW spr round 5 (radius: 5) [10:44:24 -5656.157350] SLOW spr round 6 (radius: 5) [10:45:44 -5656.156069] SLOW spr round 7 (radius: 10) [10:47:13 -5656.155944] SLOW spr round 8 (radius: 15) [10:48:48 -5649.757041] SLOW spr round 9 (radius: 5) [10:50:10 -5648.135657] SLOW spr round 10 (radius: 5) [10:51:30 -5648.134604] SLOW spr round 11 (radius: 10) [10:52:58 -5648.134138] SLOW spr round 12 (radius: 15) [10:54:35 -5648.133903] SLOW spr round 13 (radius: 20) [10:56:17 -5607.818426] SLOW spr round 14 (radius: 5) [10:57:44 -5584.352405] SLOW spr round 15 (radius: 5) [10:59:06 -5556.377477] SLOW spr round 16 (radius: 5) [11:00:27 -5556.377364] SLOW spr round 17 (radius: 10) [11:01:56 -5556.336017] SLOW spr round 18 (radius: 15) [11:03:34 -5553.787404] SLOW spr round 19 (radius: 5) [11:04:56 -5553.786116] SLOW spr round 20 (radius: 10) [11:06:26 -5553.785974] SLOW spr round 21 (radius: 15) [11:07:59 -5543.765112] SLOW spr round 22 (radius: 5) [11:09:21 -5543.764973] SLOW spr round 23 (radius: 10) [11:10:50 -5543.764929] SLOW spr round 24 (radius: 15) [11:12:25 -5543.764886] SLOW spr round 25 (radius: 20) [11:14:05 -5539.721343] SLOW spr round 26 (radius: 5) [11:15:29 -5448.434045] SLOW spr round 27 (radius: 5) [11:16:50 -5448.433768] SLOW spr round 28 (radius: 10) [11:18:21 -5448.433483] SLOW spr round 29 (radius: 15) [11:19:58 -5447.884947] SLOW spr round 30 (radius: 5) [11:21:20 -5447.884585] SLOW spr round 31 (radius: 10) [11:22:51 -5447.884332] SLOW spr round 32 (radius: 15) [11:24:28 -5447.884079] SLOW spr round 33 (radius: 20) [11:26:06 -5447.713302] SLOW spr round 34 (radius: 5) [11:27:31 -5447.713076] SLOW spr round 35 (radius: 10) [11:29:02 -5447.524848] SLOW spr round 36 (radius: 5) [11:30:23 -5447.524615] SLOW spr round 37 (radius: 10) [11:31:52 -5447.524404] SLOW spr round 38 (radius: 15) [11:33:25 -5447.524199] SLOW spr round 39 (radius: 20) [11:35:04 -5447.523994] SLOW spr round 40 (radius: 25) [11:37:10 -5405.324117] SLOW spr round 41 (radius: 5) [11:38:39 -5392.655954] SLOW spr round 42 (radius: 5) [11:40:01 -5392.655764] SLOW spr round 43 (radius: 10) [11:41:32 -5388.344907] SLOW spr round 44 (radius: 5) [11:42:54 -5377.896338] SLOW spr round 45 (radius: 5) [11:44:14 -5377.896166] SLOW spr round 46 (radius: 10) [11:45:44 -5377.895999] SLOW spr round 47 (radius: 15) [11:47:20 -5377.895845] SLOW spr round 48 (radius: 20) [11:48:59 -5377.895703] SLOW spr round 49 (radius: 25) [11:50:58 -5356.369249] SLOW spr round 50 (radius: 5) [11:52:24 -5356.369028] SLOW spr round 51 (radius: 10) [11:53:56 -5356.368882] SLOW spr round 52 (radius: 15) [11:55:32 -5356.368755] SLOW spr round 53 (radius: 20) [11:57:10 -5356.217359] SLOW spr round 54 (radius: 5) [11:58:33 -5355.807793] SLOW spr round 55 (radius: 5) [11:59:52 -5355.807676] SLOW spr round 56 (radius: 10) [12:01:22 -5355.807561] SLOW spr round 57 (radius: 15) [12:02:57 -5355.807450] SLOW spr round 58 (radius: 20) [12:04:33 -5355.807341] SLOW spr round 59 (radius: 25) [12:06:27 -5354.437904] SLOW spr round 60 (radius: 5) [12:07:51 -5354.437796] SLOW spr round 61 (radius: 10) [12:09:21 -5354.437695] SLOW spr round 62 (radius: 15) [12:10:56 -5354.437596] SLOW spr round 63 (radius: 20) [12:12:33 -5354.437500] SLOW spr round 64 (radius: 25) [12:14:30 -5354.437406] Model parameter optimization (eps = 0.100000) [12:14:38] ML tree search #9, logLikelihood: -5354.257078 [12:14:39 -38349.372356] Initial branch length optimization [12:14:39 -26059.222118] Model parameter optimization (eps = 10.000000) [12:15:45 -25587.016164] AUTODETECT spr round 1 (radius: 5) [12:17:06 -16927.825291] AUTODETECT spr round 2 (radius: 10) [12:18:45 -11706.869929] AUTODETECT spr round 3 (radius: 15) [12:20:27 -8727.461171] AUTODETECT spr round 4 (radius: 20) [12:22:02 -7704.785928] AUTODETECT spr round 5 (radius: 25) [12:23:44 -7252.003121] SPR radius for FAST iterations: 25 (autodetect) [12:23:44 -7252.003121] Model parameter optimization (eps = 3.000000) [12:24:02 -7192.387135] FAST spr round 1 (radius: 25) [12:25:44 -5966.652330] FAST spr round 2 (radius: 25) [12:27:20 -5832.390565] FAST spr round 3 (radius: 25) [12:28:54 -5782.205149] FAST spr round 4 (radius: 25) [12:30:26 -5651.655531] FAST spr round 5 (radius: 25) [12:31:58 -5649.468002] FAST spr round 6 (radius: 25) [12:33:28 -5649.467157] Model parameter optimization (eps = 1.000000) [12:33:41 -5644.871414] SLOW spr round 1 (radius: 5) [12:35:03 -5642.853850] SLOW spr round 2 (radius: 5) [12:36:24 -5642.659161] SLOW spr round 3 (radius: 5) [12:37:45 -5642.596701] SLOW spr round 4 (radius: 10) [12:39:13 -5641.434970] SLOW spr round 5 (radius: 5) [12:40:34 -5640.115090] SLOW spr round 6 (radius: 5) [12:41:55 -5640.114978] SLOW spr round 7 (radius: 10) [12:43:22 -5640.114807] SLOW spr round 8 (radius: 15) [12:44:55 -5640.007963] SLOW spr round 9 (radius: 5) [12:46:19 -5640.007869] SLOW spr round 10 (radius: 10) [12:47:48 -5640.007738] SLOW spr round 11 (radius: 15) [12:49:22 -5640.007585] SLOW spr round 12 (radius: 20) [12:50:58 -5631.189901] SLOW spr round 13 (radius: 5) [12:52:24 -5630.846625] SLOW spr round 14 (radius: 5) [12:53:44 -5630.846350] SLOW spr round 15 (radius: 10) [12:55:13 -5629.296043] SLOW spr round 16 (radius: 5) [12:56:34 -5629.295871] SLOW spr round 17 (radius: 10) [12:58:03 -5629.295808] SLOW spr round 18 (radius: 15) [12:59:35 -5629.295766] SLOW spr round 19 (radius: 20) [13:01:09 -5629.295689] SLOW spr round 20 (radius: 25) [13:02:57 -5595.082187] SLOW spr round 21 (radius: 5) [13:04:23 -5595.080176] SLOW spr round 22 (radius: 10) [13:05:53 -5595.080038] SLOW spr round 23 (radius: 15) [13:07:25 -5595.079999] SLOW spr round 24 (radius: 20) [13:09:00 -5595.079920] SLOW spr round 25 (radius: 25) [13:10:48 -5593.095876] SLOW spr round 26 (radius: 5) [13:12:15 -5593.095795] SLOW spr round 27 (radius: 10) [13:13:45 -5593.095767] SLOW spr round 28 (radius: 15) [13:15:20 -5593.095740] SLOW spr round 29 (radius: 20) [13:16:56 -5593.095690] SLOW spr round 30 (radius: 25) [13:18:44 -5593.095657] Model parameter optimization (eps = 0.100000) [13:18:51] ML tree search #10, logLikelihood: -5592.918540 [13:18:51 -38474.221757] Initial branch length optimization [13:18:52 -26320.891998] Model parameter optimization (eps = 10.000000) [13:19:58 -25792.584373] AUTODETECT spr round 1 (radius: 5) [13:21:19 -17113.267337] AUTODETECT spr round 2 (radius: 10) [13:22:58 -11383.657441] AUTODETECT spr round 3 (radius: 15) [13:24:36 -9410.723982] AUTODETECT spr round 4 (radius: 20) [13:26:14 -7764.332285] AUTODETECT spr round 5 (radius: 25) [13:28:02 -7274.929438] SPR radius for FAST iterations: 25 (autodetect) [13:28:02 -7274.929438] Model parameter optimization (eps = 3.000000) [13:28:19 -7220.690931] FAST spr round 1 (radius: 25) [13:29:59 -6198.048181] FAST spr round 2 (radius: 25) [13:31:36 -6151.292779] FAST spr round 3 (radius: 25) [13:33:11 -6050.055810] FAST spr round 4 (radius: 25) [13:34:45 -6050.004048] Model parameter optimization (eps = 1.000000) [13:34:54 -6047.113356] SLOW spr round 1 (radius: 5) [13:36:15 -6047.111180] SLOW spr round 2 (radius: 10) [13:37:43 -6047.110943] SLOW spr round 3 (radius: 15) [13:39:16 -6044.590036] SLOW spr round 4 (radius: 5) [13:40:39 -6043.968683] SLOW spr round 5 (radius: 5) [13:41:59 -6043.968605] SLOW spr round 6 (radius: 10) [13:43:26 -6043.968533] SLOW spr round 7 (radius: 15) [13:44:59 -6043.968465] SLOW spr round 8 (radius: 20) [13:46:44 -6043.861906] SLOW spr round 9 (radius: 5) [13:48:08 -6043.861845] SLOW spr round 10 (radius: 10) [13:49:35 -6043.861786] SLOW spr round 11 (radius: 15) [13:51:07 -6043.861729] SLOW spr round 12 (radius: 20) [13:52:52 -6043.861674] SLOW spr round 13 (radius: 25) [13:54:58 -6041.476153] SLOW spr round 14 (radius: 5) [13:56:21 -6041.476048] SLOW spr round 15 (radius: 10) [13:57:48 -6041.317256] SLOW spr round 16 (radius: 5) [13:59:06 -6041.317185] SLOW spr round 17 (radius: 10) [14:00:31 -6041.317138] SLOW spr round 18 (radius: 15) [14:02:02 -6041.317092] SLOW spr round 19 (radius: 20) [14:03:47 -6041.317047] SLOW spr round 20 (radius: 25) [14:05:53 -6041.317003] Model parameter optimization (eps = 0.100000) [14:05:55] ML tree search #11, logLikelihood: -6041.316806 [14:05:55 -38509.782595] Initial branch length optimization [14:05:56 -26372.737556] Model parameter optimization (eps = 10.000000) [14:07:00 -25813.073151] AUTODETECT spr round 1 (radius: 5) [14:08:20 -16707.191536] AUTODETECT spr round 2 (radius: 10) [14:10:01 -11028.808782] AUTODETECT spr round 3 (radius: 15) [14:12:05 -8195.566562] AUTODETECT spr round 4 (radius: 20) [14:13:42 -7559.456290] AUTODETECT spr round 5 (radius: 25) [14:15:20 -7223.674660] SPR radius for FAST iterations: 25 (autodetect) [14:15:20 -7223.674660] Model parameter optimization (eps = 3.000000) [14:15:41 -7175.953208] FAST spr round 1 (radius: 25) [14:17:25 -6413.497826] FAST spr round 2 (radius: 25) [14:19:05 -5946.271525] FAST spr round 3 (radius: 25) [14:20:41 -5722.446798] FAST spr round 4 (radius: 25) [14:22:18 -5685.064034] FAST spr round 5 (radius: 25) [14:23:55 -5675.742788] FAST spr round 6 (radius: 25) [14:25:29 -5674.320750] FAST spr round 7 (radius: 25) [14:27:03 -5674.320230] Model parameter optimization (eps = 1.000000) [14:27:14 -5672.612376] SLOW spr round 1 (radius: 5) [14:28:37 -5672.164755] SLOW spr round 2 (radius: 5) [14:30:01 -5671.125914] SLOW spr round 3 (radius: 5) [14:31:24 -5670.815517] SLOW spr round 4 (radius: 5) [14:32:46 -5670.814187] SLOW spr round 5 (radius: 10) [14:34:19 -5669.778648] SLOW spr round 6 (radius: 5) [14:35:41 -5668.334420] SLOW spr round 7 (radius: 5) [14:37:01 -5666.893901] SLOW spr round 8 (radius: 5) [14:38:21 -5666.892619] SLOW spr round 9 (radius: 10) [14:39:51 -5666.892410] SLOW spr round 10 (radius: 15) [14:41:25 -5664.069491] SLOW spr round 11 (radius: 5) [14:42:47 -5659.703374] SLOW spr round 12 (radius: 5) [14:44:07 -5659.703324] SLOW spr round 13 (radius: 10) [14:45:35 -5659.703275] SLOW spr round 14 (radius: 15) [14:47:09 -5659.703217] SLOW spr round 15 (radius: 20) [14:48:47 -5624.120290] SLOW spr round 16 (radius: 5) [14:50:12 -5623.687347] SLOW spr round 17 (radius: 5) [14:51:32 -5623.687293] SLOW spr round 18 (radius: 10) [14:53:02 -5622.758843] SLOW spr round 19 (radius: 5) [14:54:21 -5622.758798] SLOW spr round 20 (radius: 10) [14:55:51 -5622.758753] SLOW spr round 21 (radius: 15) [14:57:26 -5622.758661] SLOW spr round 22 (radius: 20) [14:59:04 -5621.130618] SLOW spr round 23 (radius: 5) [15:00:27 -5620.143590] SLOW spr round 24 (radius: 5) [15:01:46 -5620.143506] SLOW spr round 25 (radius: 10) [15:03:15 -5620.143458] SLOW spr round 26 (radius: 15) [15:04:49 -5620.143413] SLOW spr round 27 (radius: 20) [15:06:27 -5614.308686] SLOW spr round 28 (radius: 5) [15:07:50 -5614.308255] SLOW spr round 29 (radius: 10) [15:09:19 -5612.621591] SLOW spr round 30 (radius: 5) [15:10:38 -5612.621419] SLOW spr round 31 (radius: 10) [15:12:06 -5612.621416] SLOW spr round 32 (radius: 15) [15:13:43 -5612.621416] SLOW spr round 33 (radius: 20) [15:15:22 -5612.621416] SLOW spr round 34 (radius: 25) [15:17:26 -5605.204998] SLOW spr round 35 (radius: 5) [15:18:51 -5605.204541] SLOW spr round 36 (radius: 10) [15:20:24 -5604.457823] SLOW spr round 37 (radius: 5) [15:21:45 -5604.457758] SLOW spr round 38 (radius: 10) [15:23:16 -5604.457755] SLOW spr round 39 (radius: 15) [15:24:54 -5604.414377] SLOW spr round 40 (radius: 20) [15:26:34 -5604.414377] SLOW spr round 41 (radius: 25) [15:28:36 -5604.414377] Model parameter optimization (eps = 0.100000) [15:28:45] ML tree search #12, logLikelihood: -5603.967448 [15:28:45 -38096.471388] Initial branch length optimization [15:28:46 -26075.437783] Model parameter optimization (eps = 10.000000) [15:29:53 -25532.663366] AUTODETECT spr round 1 (radius: 5) [15:31:15 -16763.686403] AUTODETECT spr round 2 (radius: 10) [15:32:54 -11476.281332] AUTODETECT spr round 3 (radius: 15) [15:34:33 -9040.340016] AUTODETECT spr round 4 (radius: 20) [15:36:13 -7833.025093] AUTODETECT spr round 5 (radius: 25) [15:38:13 -7141.359092] SPR radius for FAST iterations: 25 (autodetect) [15:38:13 -7141.359092] Model parameter optimization (eps = 3.000000) [15:38:27 -7092.587236] FAST spr round 1 (radius: 25) [15:40:05 -6329.220178] FAST spr round 2 (radius: 25) [15:41:40 -6249.146464] FAST spr round 3 (radius: 25) [15:43:13 -6237.361128] FAST spr round 4 (radius: 25) [15:44:45 -6233.690784] FAST spr round 5 (radius: 25) [15:46:15 -6233.690726] Model parameter optimization (eps = 1.000000) [15:46:21 -6233.263312] SLOW spr round 1 (radius: 5) [15:47:41 -6232.900728] SLOW spr round 2 (radius: 5) [15:49:01 -6228.439548] SLOW spr round 3 (radius: 5) [15:50:19 -6228.438593] SLOW spr round 4 (radius: 10) [15:51:46 -6223.488990] SLOW spr round 5 (radius: 5) [15:53:06 -6217.306185] SLOW spr round 6 (radius: 5) [15:54:26 -6217.293336] SLOW spr round 7 (radius: 10) [15:55:53 -6217.293143] SLOW spr round 8 (radius: 15) [15:57:25 -6209.802897] SLOW spr round 9 (radius: 5) [15:58:48 -6133.582737] SLOW spr round 10 (radius: 5) [16:00:05 -6122.822086] SLOW spr round 11 (radius: 5) [16:01:23 -6122.821970] SLOW spr round 12 (radius: 10) [16:02:49 -6122.821890] SLOW spr round 13 (radius: 15) [16:04:22 -6120.419872] SLOW spr round 14 (radius: 5) [16:05:43 -6120.419511] SLOW spr round 15 (radius: 10) [16:07:09 -6120.419445] SLOW spr round 16 (radius: 15) [16:08:42 -6120.419385] SLOW spr round 17 (radius: 20) [16:10:21 -6067.191475] SLOW spr round 18 (radius: 5) [16:11:45 -6026.381808] SLOW spr round 19 (radius: 5) [16:13:05 -6024.887633] SLOW spr round 20 (radius: 5) [16:14:23 -6024.887606] SLOW spr round 21 (radius: 10) [16:15:51 -6024.337617] SLOW spr round 22 (radius: 5) [16:17:10 -6024.337594] SLOW spr round 23 (radius: 10) [16:18:37 -6024.337571] SLOW spr round 24 (radius: 15) [16:20:11 -6023.633488] SLOW spr round 25 (radius: 5) [16:21:32 -6023.633462] SLOW spr round 26 (radius: 10) [16:23:01 -6023.633428] SLOW spr round 27 (radius: 15) [16:24:35 -6023.633400] SLOW spr round 28 (radius: 20) [16:26:13 -6023.633375] SLOW spr round 29 (radius: 25) [16:28:11 -6023.633355] Model parameter optimization (eps = 0.100000) [16:28:17] ML tree search #13, logLikelihood: -6023.491881 [16:28:17 -38523.091421] Initial branch length optimization [16:28:18 -26147.628908] Model parameter optimization (eps = 10.000000) [16:28:56 -25908.686610] AUTODETECT spr round 1 (radius: 5) [16:30:17 -17342.154164] AUTODETECT spr round 2 (radius: 10) [16:31:46 -11316.726429] AUTODETECT spr round 3 (radius: 15) [16:33:22 -8549.205522] AUTODETECT spr round 4 (radius: 20) [16:35:03 -7816.988571] AUTODETECT spr round 5 (radius: 25) [16:36:51 -7224.108189] SPR radius for FAST iterations: 25 (autodetect) [16:36:51 -7224.108189] Model parameter optimization (eps = 3.000000) [16:37:30 -7034.723844] FAST spr round 1 (radius: 25) [16:39:19 -5772.014975] FAST spr round 2 (radius: 25) [16:41:01 -5705.926973] FAST spr round 3 (radius: 25) [16:42:42 -5580.551718] FAST spr round 4 (radius: 25) [16:44:23 -5511.270835] FAST spr round 5 (radius: 25) [16:46:01 -5508.910420] FAST spr round 6 (radius: 25) [16:47:38 -5508.909403] Model parameter optimization (eps = 1.000000) [16:47:49 -5503.510077] SLOW spr round 1 (radius: 5) [16:49:09 -5501.970424] SLOW spr round 2 (radius: 5) [16:50:30 -5499.577838] SLOW spr round 3 (radius: 5) [16:51:50 -5499.577542] SLOW spr round 4 (radius: 10) [16:53:22 -5494.277745] SLOW spr round 5 (radius: 5) [16:54:44 -5487.680313] SLOW spr round 6 (radius: 5) [16:56:03 -5487.680170] SLOW spr round 7 (radius: 10) [16:57:32 -5487.680045] SLOW spr round 8 (radius: 15) [16:59:09 -5473.393468] SLOW spr round 9 (radius: 5) [17:00:28 -5465.372745] SLOW spr round 10 (radius: 5) [17:01:46 -5465.372720] SLOW spr round 11 (radius: 10) [17:03:13 -5465.262885] SLOW spr round 12 (radius: 5) [17:04:31 -5465.262883] SLOW spr round 13 (radius: 10) [17:05:58 -5465.262882] SLOW spr round 14 (radius: 15) [17:07:32 -5465.262882] SLOW spr round 15 (radius: 20) [17:09:09 -5464.467095] SLOW spr round 16 (radius: 5) [17:10:31 -5456.724548] SLOW spr round 17 (radius: 5) [17:11:49 -5456.722871] SLOW spr round 18 (radius: 10) [17:13:17 -5430.299872] SLOW spr round 19 (radius: 5) [17:14:36 -5430.299870] SLOW spr round 20 (radius: 10) [17:16:06 -5430.299869] SLOW spr round 21 (radius: 15) [17:17:44 -5430.299869] SLOW spr round 22 (radius: 20) [17:19:23 -5430.299868] SLOW spr round 23 (radius: 25) [17:21:26 -5422.048789] SLOW spr round 24 (radius: 5) [17:22:52 -5421.897086] SLOW spr round 25 (radius: 5) [17:24:12 -5421.896720] SLOW spr round 26 (radius: 10) [17:25:41 -5421.896640] SLOW spr round 27 (radius: 15) [17:27:17 -5421.896620] SLOW spr round 28 (radius: 20) [17:28:56 -5421.896613] SLOW spr round 29 (radius: 25) [17:30:58 -5416.157803] SLOW spr round 30 (radius: 5) [17:32:25 -5282.694437] SLOW spr round 31 (radius: 5) [17:33:47 -5273.624443] SLOW spr round 32 (radius: 5) [17:35:05 -5273.615250] SLOW spr round 33 (radius: 10) [17:36:35 -5273.613183] SLOW spr round 34 (radius: 15) [17:38:13 -5273.383315] SLOW spr round 35 (radius: 5) [17:39:35 -5271.455333] SLOW spr round 36 (radius: 5) [17:40:54 -5271.455315] SLOW spr round 37 (radius: 10) [17:42:22 -5271.455313] SLOW spr round 38 (radius: 15) [17:43:58 -5271.455312] SLOW spr round 39 (radius: 20) [17:45:41 -5267.313718] SLOW spr round 40 (radius: 5) [17:47:05 -5266.263870] SLOW spr round 41 (radius: 5) [17:48:25 -5266.236649] SLOW spr round 42 (radius: 10) [17:49:52 -5266.236413] SLOW spr round 43 (radius: 15) [17:51:27 -5266.236338] SLOW spr round 44 (radius: 20) [17:53:09 -5266.236295] SLOW spr round 45 (radius: 25) [17:55:14 -5265.520448] SLOW spr round 46 (radius: 5) [17:56:38 -5265.520428] SLOW spr round 47 (radius: 10) [17:58:06 -5265.520417] SLOW spr round 48 (radius: 15) [17:59:42 -5265.520410] SLOW spr round 49 (radius: 20) [18:01:24 -5265.520405] SLOW spr round 50 (radius: 25) [18:03:27 -5265.520402] Model parameter optimization (eps = 0.100000) [18:03:34] ML tree search #14, logLikelihood: -5265.319663 [18:03:34 -38206.090120] Initial branch length optimization [18:03:35 -26069.699659] Model parameter optimization (eps = 10.000000) [18:04:29 -25561.706158] AUTODETECT spr round 1 (radius: 5) [18:05:53 -16855.343642] AUTODETECT spr round 2 (radius: 10) [18:07:30 -11089.962971] AUTODETECT spr round 3 (radius: 15) [18:09:09 -8238.499654] AUTODETECT spr round 4 (radius: 20) [18:10:50 -7218.909887] AUTODETECT spr round 5 (radius: 25) [18:12:30 -6775.763793] SPR radius for FAST iterations: 25 (autodetect) [18:12:30 -6775.763793] Model parameter optimization (eps = 3.000000) [18:12:45 -6741.046218] FAST spr round 1 (radius: 25) [18:14:27 -6135.335910] FAST spr round 2 (radius: 25) [18:16:05 -6062.349996] FAST spr round 3 (radius: 25) [18:17:40 -6061.665690] FAST spr round 4 (radius: 25) [18:19:13 -6061.664638] Model parameter optimization (eps = 1.000000) [18:19:21 -6059.385084] SLOW spr round 1 (radius: 5) [18:20:42 -6059.131978] SLOW spr round 2 (radius: 5) [18:22:04 -6059.131192] SLOW spr round 3 (radius: 10) [18:23:35 -6059.121919] SLOW spr round 4 (radius: 15) [18:25:11 -6030.505920] SLOW spr round 5 (radius: 5) [18:26:35 -6028.495141] SLOW spr round 6 (radius: 5) [18:27:56 -6028.492808] SLOW spr round 7 (radius: 10) [18:29:27 -6025.959303] SLOW spr round 8 (radius: 5) [18:30:49 -6025.800506] SLOW spr round 9 (radius: 5) [18:32:11 -6025.800400] SLOW spr round 10 (radius: 10) [18:33:41 -6025.800305] SLOW spr round 11 (radius: 15) [18:35:19 -5945.111377] SLOW spr round 12 (radius: 5) [18:36:42 -5900.704357] SLOW spr round 13 (radius: 5) [18:38:03 -5899.620558] SLOW spr round 14 (radius: 5) [18:39:25 -5899.619171] SLOW spr round 15 (radius: 10) [18:40:57 -5897.784220] SLOW spr round 16 (radius: 5) [18:42:21 -5897.783864] SLOW spr round 17 (radius: 10) [18:43:52 -5897.783766] SLOW spr round 18 (radius: 15) [18:45:30 -5895.209178] SLOW spr round 19 (radius: 5) [18:46:54 -5895.209091] SLOW spr round 20 (radius: 10) [18:48:25 -5895.209074] SLOW spr round 21 (radius: 15) [18:50:01 -5895.209049] SLOW spr round 22 (radius: 20) [18:51:43 -5883.365773] SLOW spr round 23 (radius: 5) [18:53:12 -5785.724388] SLOW spr round 24 (radius: 5) [18:54:35 -5783.866389] SLOW spr round 25 (radius: 5) [18:55:58 -5783.866072] SLOW spr round 26 (radius: 10) [18:57:31 -5783.864305] SLOW spr round 27 (radius: 15) [18:59:10 -5783.863965] SLOW spr round 28 (radius: 20) [19:00:51 -5665.749128] SLOW spr round 29 (radius: 5) [19:02:21 -5638.373796] SLOW spr round 30 (radius: 5) [19:03:44 -5638.372540] SLOW spr round 31 (radius: 10) [19:05:19 -5636.541409] SLOW spr round 32 (radius: 5) [19:06:43 -5636.431360] SLOW spr round 33 (radius: 5) [19:08:05 -5636.431244] SLOW spr round 34 (radius: 10) [19:09:37 -5636.430982] SLOW spr round 35 (radius: 15) [19:11:16 -5636.430923] SLOW spr round 36 (radius: 20) [19:12:56 -5625.818186] SLOW spr round 37 (radius: 5) [19:14:21 -5625.814809] SLOW spr round 38 (radius: 10) [19:15:51 -5625.814770] SLOW spr round 39 (radius: 15) [19:17:26 -5625.814686] SLOW spr round 40 (radius: 20) [19:19:01 -5625.814660] SLOW spr round 41 (radius: 25) [19:20:50 -5624.633436] SLOW spr round 42 (radius: 5) [19:22:16 -5614.244346] SLOW spr round 43 (radius: 5) [19:23:37 -5614.243891] SLOW spr round 44 (radius: 10) [19:25:06 -5614.243794] SLOW spr round 45 (radius: 15) [19:26:41 -5613.685142] SLOW spr round 46 (radius: 5) [19:28:02 -5613.655984] SLOW spr round 47 (radius: 10) [19:29:31 -5613.655898] SLOW spr round 48 (radius: 15) [19:31:06 -5613.655887] SLOW spr round 49 (radius: 20) [19:32:43 -5612.554581] SLOW spr round 50 (radius: 5) [19:34:09 -5612.553936] SLOW spr round 51 (radius: 10) [19:35:40 -5612.553923] SLOW spr round 52 (radius: 15) [19:37:16 -5612.553916] SLOW spr round 53 (radius: 20) [19:38:54 -5612.553911] SLOW spr round 54 (radius: 25) [19:40:43 -5606.700354] SLOW spr round 55 (radius: 5) [19:42:11 -5606.680305] SLOW spr round 56 (radius: 10) [19:43:42 -5606.677231] SLOW spr round 57 (radius: 15) [19:45:17 -5606.676490] SLOW spr round 58 (radius: 20) [19:46:54 -5606.676312] SLOW spr round 59 (radius: 25) [19:48:39 -5606.676268] Model parameter optimization (eps = 0.100000) [19:48:53] ML tree search #15, logLikelihood: -5602.066021 [19:48:53 -37874.409691] Initial branch length optimization [19:48:54 -25843.034055] Model parameter optimization (eps = 10.000000) [19:49:55 -25350.827890] AUTODETECT spr round 1 (radius: 5) [19:51:15 -16731.881124] AUTODETECT spr round 2 (radius: 10) [19:52:54 -11769.082755] AUTODETECT spr round 3 (radius: 15) [19:54:36 -9177.330185] AUTODETECT spr round 4 (radius: 20) [19:56:15 -7950.977488] AUTODETECT spr round 5 (radius: 25) [19:58:02 -7655.056320] SPR radius for FAST iterations: 25 (autodetect) [19:58:02 -7655.056320] Model parameter optimization (eps = 3.000000) [19:58:16 -7613.130424] FAST spr round 1 (radius: 25) [19:59:58 -6404.821146] FAST spr round 2 (radius: 25) [20:01:34 -5726.347853] FAST spr round 3 (radius: 25) [20:03:09 -5657.963817] FAST spr round 4 (radius: 25) [20:04:41 -5657.647650] FAST spr round 5 (radius: 25) [20:06:13 -5657.647635] Model parameter optimization (eps = 1.000000) [20:06:23 -5656.581304] SLOW spr round 1 (radius: 5) [20:07:43 -5638.976911] SLOW spr round 2 (radius: 5) [20:09:02 -5638.123598] SLOW spr round 3 (radius: 5) [20:10:19 -5638.123595] SLOW spr round 4 (radius: 10) [20:11:45 -5638.123594] SLOW spr round 5 (radius: 15) [20:13:16 -5638.123594] SLOW spr round 6 (radius: 20) [20:14:54 -5628.152971] SLOW spr round 7 (radius: 5) [20:16:18 -5616.419282] SLOW spr round 8 (radius: 5) [20:17:38 -5614.961104] SLOW spr round 9 (radius: 5) [20:18:58 -5614.959151] SLOW spr round 10 (radius: 10) [20:20:24 -5611.685903] SLOW spr round 11 (radius: 5) [20:21:42 -5611.685899] SLOW spr round 12 (radius: 10) [20:23:07 -5611.685899] SLOW spr round 13 (radius: 15) [20:24:38 -5611.685894] SLOW spr round 14 (radius: 20) [20:26:17 -5580.081787] SLOW spr round 15 (radius: 5) [20:27:40 -5513.727248] SLOW spr round 16 (radius: 5) [20:28:58 -5513.727181] SLOW spr round 17 (radius: 10) [20:30:24 -5509.041803] SLOW spr round 18 (radius: 5) [20:31:43 -5507.086659] SLOW spr round 19 (radius: 5) [20:33:01 -5507.086637] SLOW spr round 20 (radius: 10) [20:34:27 -5506.542900] SLOW spr round 21 (radius: 5) [20:35:44 -5506.542884] SLOW spr round 22 (radius: 10) [20:37:10 -5506.542884] SLOW spr round 23 (radius: 15) [20:38:39 -5506.542867] SLOW spr round 24 (radius: 20) [20:40:14 -5506.542863] SLOW spr round 25 (radius: 25) [20:42:08 -5487.701194] SLOW spr round 26 (radius: 5) [20:43:31 -5486.694960] SLOW spr round 27 (radius: 5) [20:44:49 -5486.653155] SLOW spr round 28 (radius: 10) [20:46:14 -5486.652845] SLOW spr round 29 (radius: 15) [20:47:44 -5486.652838] SLOW spr round 30 (radius: 20) [20:49:16 -5486.652838] SLOW spr round 31 (radius: 25) [20:51:05 -5486.652838] Model parameter optimization (eps = 0.100000) [20:51:14] ML tree search #16, logLikelihood: -5486.370162 [20:51:14 -38758.047792] Initial branch length optimization [20:51:15 -26477.740985] Model parameter optimization (eps = 10.000000) [20:52:23 -25941.875358] AUTODETECT spr round 1 (radius: 5) [20:53:44 -17173.886094] AUTODETECT spr round 2 (radius: 10) [20:55:22 -11438.020352] AUTODETECT spr round 3 (radius: 15) [20:57:06 -9099.312164] AUTODETECT spr round 4 (radius: 20) [20:58:54 -7715.728781] AUTODETECT spr round 5 (radius: 25) [21:00:37 -7007.779644] SPR radius for FAST iterations: 25 (autodetect) [21:00:37 -7007.779644] Model parameter optimization (eps = 3.000000) [21:00:54 -6935.318064] FAST spr round 1 (radius: 25) [21:02:38 -6042.583137] FAST spr round 2 (radius: 25) [21:04:18 -5954.548454] FAST spr round 3 (radius: 25) [21:05:58 -5934.091325] FAST spr round 4 (radius: 25) [21:07:35 -5933.274737] FAST spr round 5 (radius: 25) [21:09:11 -5933.274645] Model parameter optimization (eps = 1.000000) [21:09:24 -5931.400339] SLOW spr round 1 (radius: 5) [21:10:46 -5930.711602] SLOW spr round 2 (radius: 5) [21:12:06 -5930.709558] SLOW spr round 3 (radius: 10) [21:13:38 -5928.554560] SLOW spr round 4 (radius: 5) [21:14:59 -5928.553977] SLOW spr round 5 (radius: 10) [21:16:31 -5928.553568] SLOW spr round 6 (radius: 15) [21:18:12 -5887.524993] SLOW spr round 7 (radius: 5) [21:19:36 -5886.520195] SLOW spr round 8 (radius: 5) [21:20:58 -5886.519649] SLOW spr round 9 (radius: 10) [21:22:29 -5885.231251] SLOW spr round 10 (radius: 5) [21:23:50 -5885.231158] SLOW spr round 11 (radius: 10) [21:25:22 -5885.230997] SLOW spr round 12 (radius: 15) [21:27:01 -5885.230900] SLOW spr round 13 (radius: 20) [21:28:43 -5875.545114] SLOW spr round 14 (radius: 5) [21:30:07 -5874.896017] SLOW spr round 15 (radius: 5) [21:31:27 -5874.895393] SLOW spr round 16 (radius: 10) [21:32:57 -5874.895251] SLOW spr round 17 (radius: 15) [21:34:30 -5874.895154] SLOW spr round 18 (radius: 20) [21:36:08 -5871.040450] SLOW spr round 19 (radius: 5) [21:37:33 -5865.863463] SLOW spr round 20 (radius: 5) [21:38:51 -5864.287246] SLOW spr round 21 (radius: 5) [21:40:10 -5864.285949] SLOW spr round 22 (radius: 10) [21:41:37 -5864.285868] SLOW spr round 23 (radius: 15) [21:43:10 -5864.285836] SLOW spr round 24 (radius: 20) [21:44:46 -5855.268477] SLOW spr round 25 (radius: 5) [21:46:08 -5854.073041] SLOW spr round 26 (radius: 5) [21:47:25 -5854.073025] SLOW spr round 27 (radius: 10) [21:48:52 -5854.073009] SLOW spr round 28 (radius: 15) [21:50:23 -5854.073009] SLOW spr round 29 (radius: 20) [21:51:58 -5795.298971] SLOW spr round 30 (radius: 5) [21:53:20 -5632.400740] SLOW spr round 31 (radius: 5) [21:54:40 -5630.070313] SLOW spr round 32 (radius: 5) [21:55:59 -5630.070282] SLOW spr round 33 (radius: 10) [21:57:26 -5630.070265] SLOW spr round 34 (radius: 15) [21:59:00 -5630.070258] SLOW spr round 35 (radius: 20) [22:00:38 -5630.070258] SLOW spr round 36 (radius: 25) [22:02:30 -5626.553613] SLOW spr round 37 (radius: 5) [22:03:55 -5619.603534] SLOW spr round 38 (radius: 5) [22:05:15 -5619.206298] SLOW spr round 39 (radius: 5) [22:06:33 -5619.206296] SLOW spr round 40 (radius: 10) [22:08:00 -5619.206286] SLOW spr round 41 (radius: 15) [22:09:35 -5619.206258] SLOW spr round 42 (radius: 20) [22:11:12 -5619.206256] SLOW spr round 43 (radius: 25) [22:13:04 -5617.992666] SLOW spr round 44 (radius: 5) [22:14:29 -5616.983279] SLOW spr round 45 (radius: 5) [22:15:48 -5616.983279] SLOW spr round 46 (radius: 10) [22:17:16 -5616.983271] SLOW spr round 47 (radius: 15) [22:18:50 -5616.983271] SLOW spr round 48 (radius: 20) [22:20:29 -5616.983271] SLOW spr round 49 (radius: 25) [22:22:23 -5615.952948] SLOW spr round 50 (radius: 5) [22:23:46 -5615.952940] SLOW spr round 51 (radius: 10) [22:25:14 -5615.952936] SLOW spr round 52 (radius: 15) [22:26:49 -5615.952936] SLOW spr round 53 (radius: 20) [22:28:27 -5615.952936] SLOW spr round 54 (radius: 25) [22:30:24 -5615.952936] Model parameter optimization (eps = 0.100000) [22:30:30] ML tree search #17, logLikelihood: -5615.793939 [22:30:31 -38460.516327] Initial branch length optimization [22:30:31 -26354.280264] Model parameter optimization (eps = 10.000000) [22:31:34 -25809.861219] AUTODETECT spr round 1 (radius: 5) [22:32:55 -17152.643065] AUTODETECT spr round 2 (radius: 10) [22:34:34 -11518.944814] AUTODETECT spr round 3 (radius: 15) [22:36:13 -9252.592850] AUTODETECT spr round 4 (radius: 20) [22:37:52 -7798.468305] AUTODETECT spr round 5 (radius: 25) [22:39:41 -6734.807796] SPR radius for FAST iterations: 25 (autodetect) [22:39:41 -6734.807796] Model parameter optimization (eps = 3.000000) [22:39:57 -6695.887396] FAST spr round 1 (radius: 25) [22:41:38 -5785.840462] FAST spr round 2 (radius: 25) [22:43:17 -5707.060795] FAST spr round 3 (radius: 25) [22:44:54 -5699.625297] FAST spr round 4 (radius: 25) [22:46:29 -5699.354877] FAST spr round 5 (radius: 25) [22:48:02 -5699.353417] Model parameter optimization (eps = 1.000000) [22:48:12 -5696.756551] SLOW spr round 1 (radius: 5) [22:49:32 -5696.139028] SLOW spr round 2 (radius: 5) [22:50:52 -5695.561089] SLOW spr round 3 (radius: 5) [22:52:11 -5694.030833] SLOW spr round 4 (radius: 5) [22:53:30 -5694.030573] SLOW spr round 5 (radius: 10) [22:55:02 -5690.416497] SLOW spr round 6 (radius: 5) [22:56:26 -5687.449221] SLOW spr round 7 (radius: 5) [22:57:49 -5685.805702] SLOW spr round 8 (radius: 5) [22:59:10 -5685.799311] SLOW spr round 9 (radius: 10) [23:00:40 -5685.799283] SLOW spr round 10 (radius: 15) [23:02:19 -5682.735266] SLOW spr round 11 (radius: 5) [23:03:44 -5681.628048] SLOW spr round 12 (radius: 5) [23:05:05 -5681.627103] SLOW spr round 13 (radius: 10) [23:06:34 -5681.627053] SLOW spr round 14 (radius: 15) [23:08:09 -5681.627033] SLOW spr round 15 (radius: 20) [23:09:49 -5679.145643] SLOW spr round 16 (radius: 5) [23:11:13 -5679.144209] SLOW spr round 17 (radius: 10) [23:12:44 -5679.036420] SLOW spr round 18 (radius: 5) [23:14:04 -5679.036058] SLOW spr round 19 (radius: 10) [23:15:32 -5679.035835] SLOW spr round 20 (radius: 15) [23:17:08 -5679.035699] SLOW spr round 21 (radius: 20) [23:18:49 -5679.035615] SLOW spr round 22 (radius: 25) [23:20:48 -5642.987282] SLOW spr round 23 (radius: 5) [23:22:14 -5635.779172] SLOW spr round 24 (radius: 5) [23:23:34 -5635.779149] SLOW spr round 25 (radius: 10) [23:25:03 -5635.779145] SLOW spr round 26 (radius: 15) [23:26:40 -5598.719596] SLOW spr round 27 (radius: 5) [23:28:02 -5596.775400] SLOW spr round 28 (radius: 5) [23:29:21 -5596.775372] SLOW spr round 29 (radius: 10) [23:30:50 -5596.775359] SLOW spr round 30 (radius: 15) [23:32:25 -5596.775353] SLOW spr round 31 (radius: 20) [23:34:02 -5595.830513] SLOW spr round 32 (radius: 5) [23:35:26 -5595.830492] SLOW spr round 33 (radius: 10) [23:36:55 -5595.830490] SLOW spr round 34 (radius: 15) [23:38:29 -5595.830489] SLOW spr round 35 (radius: 20) [23:40:06 -5595.297828] SLOW spr round 36 (radius: 5) [23:41:28 -5595.294803] SLOW spr round 37 (radius: 10) [23:42:55 -5595.294775] SLOW spr round 38 (radius: 15) [23:44:28 -5595.294774] SLOW spr round 39 (radius: 20) [23:46:05 -5595.294761] SLOW spr round 40 (radius: 25) [23:47:58 -5593.711065] SLOW spr round 41 (radius: 5) [23:49:21 -5593.711065] SLOW spr round 42 (radius: 10) [23:50:49 -5592.961655] SLOW spr round 43 (radius: 5) [23:52:07 -5592.960634] SLOW spr round 44 (radius: 10) [23:53:34 -5592.960605] SLOW spr round 45 (radius: 15) [23:55:08 -5592.960603] SLOW spr round 46 (radius: 20) [23:56:47 -5592.960602] SLOW spr round 47 (radius: 25) [23:58:42 -5592.960601] Model parameter optimization (eps = 0.100000) [23:58:51] ML tree search #18, logLikelihood: -5592.728446 [23:58:51 -38125.674500] Initial branch length optimization [23:58:52 -26064.754465] Model parameter optimization (eps = 10.000000) [23:59:20 -25837.215230] AUTODETECT spr round 1 (radius: 5) [24:00:40 -16570.712604] AUTODETECT spr round 2 (radius: 10) [24:02:06 -11358.771982] AUTODETECT spr round 3 (radius: 15) [24:03:45 -8304.462638] AUTODETECT spr round 4 (radius: 20) [24:05:28 -7422.092755] AUTODETECT spr round 5 (radius: 25) [24:07:21 -6968.607261] SPR radius for FAST iterations: 25 (autodetect) [24:07:21 -6968.607261] Model parameter optimization (eps = 3.000000) [24:08:07 -6852.384599] FAST spr round 1 (radius: 25) [24:09:54 -6083.816259] FAST spr round 2 (radius: 25) [24:11:34 -6011.683619] FAST spr round 3 (radius: 25) [24:13:10 -6011.683177] Model parameter optimization (eps = 1.000000) [24:13:22 -6010.589377] SLOW spr round 1 (radius: 5) [24:14:43 -6010.236258] SLOW spr round 2 (radius: 5) [24:16:05 -6009.521561] SLOW spr round 3 (radius: 5) [24:17:26 -5969.711037] SLOW spr round 4 (radius: 5) [24:18:48 -5961.864746] SLOW spr round 5 (radius: 5) [24:20:07 -5961.864696] SLOW spr round 6 (radius: 10) [24:21:37 -5961.036227] SLOW spr round 7 (radius: 5) [24:22:58 -5960.921436] SLOW spr round 8 (radius: 5) [24:24:16 -5960.919309] SLOW spr round 9 (radius: 10) [24:25:44 -5960.919086] SLOW spr round 10 (radius: 15) [24:27:24 -5861.882878] SLOW spr round 11 (radius: 5) [24:28:47 -5851.418132] SLOW spr round 12 (radius: 5) [24:30:07 -5851.417639] SLOW spr round 13 (radius: 10) [24:31:36 -5848.940494] SLOW spr round 14 (radius: 5) [24:32:55 -5848.940102] SLOW spr round 15 (radius: 10) [24:34:23 -5848.940071] SLOW spr round 16 (radius: 15) [24:36:01 -5845.637782] SLOW spr round 17 (radius: 5) [24:37:23 -5844.317678] SLOW spr round 18 (radius: 5) [24:38:40 -5844.317643] SLOW spr round 19 (radius: 10) [24:40:08 -5844.317639] SLOW spr round 20 (radius: 15) [24:41:45 -5844.317638] SLOW spr round 21 (radius: 20) [24:43:25 -5843.420272] SLOW spr round 22 (radius: 5) [24:44:48 -5843.420270] SLOW spr round 23 (radius: 10) [24:46:17 -5843.420270] SLOW spr round 24 (radius: 15) [24:47:55 -5843.420270] SLOW spr round 25 (radius: 20) [24:49:36 -5843.420270] SLOW spr round 26 (radius: 25) [24:51:29 -5814.839112] SLOW spr round 27 (radius: 5) [24:52:54 -5814.834433] SLOW spr round 28 (radius: 10) [24:54:22 -5814.834433] SLOW spr round 29 (radius: 15) [24:55:57 -5814.834433] SLOW spr round 30 (radius: 20) [24:57:37 -5814.834433] SLOW spr round 31 (radius: 25) [24:59:34 -5811.804673] SLOW spr round 32 (radius: 5) [25:00:59 -5770.018325] SLOW spr round 33 (radius: 5) [25:02:19 -5767.614703] SLOW spr round 34 (radius: 5) [25:03:37 -5767.613319] SLOW spr round 35 (radius: 10) [25:05:03 -5767.613224] SLOW spr round 36 (radius: 15) [25:06:40 -5767.613203] SLOW spr round 37 (radius: 20) [25:08:19 -5767.613202] SLOW spr round 38 (radius: 25) [25:10:18 -5765.055853] SLOW spr round 39 (radius: 5) [25:11:41 -5765.055080] SLOW spr round 40 (radius: 10) [25:13:10 -5765.055015] SLOW spr round 41 (radius: 15) [25:14:47 -5765.055005] SLOW spr round 42 (radius: 20) [25:16:26 -5765.028837] SLOW spr round 43 (radius: 25) [25:18:22 -5765.028727] Model parameter optimization (eps = 0.100000) [25:18:29] ML tree search #19, logLikelihood: -5764.822295 [25:18:29 -38162.890406] Initial branch length optimization [25:18:30 -26031.026227] Model parameter optimization (eps = 10.000000) [25:19:43 -25487.370730] AUTODETECT spr round 1 (radius: 5) [25:21:06 -16538.509852] AUTODETECT spr round 2 (radius: 10) [25:22:45 -10973.897157] AUTODETECT spr round 3 (radius: 15) [25:24:30 -8467.574805] AUTODETECT spr round 4 (radius: 20) [25:26:07 -7596.026423] AUTODETECT spr round 5 (radius: 25) [25:28:04 -6940.208176] SPR radius for FAST iterations: 25 (autodetect) [25:28:04 -6940.208176] Model parameter optimization (eps = 3.000000) [25:28:21 -6894.007889] FAST spr round 1 (radius: 25) [25:30:11 -6210.540431] FAST spr round 2 (radius: 25) [25:31:57 -6019.957560] FAST spr round 3 (radius: 25) [25:33:40 -5804.435200] FAST spr round 4 (radius: 25) [25:35:24 -5776.678498] FAST spr round 5 (radius: 25) [25:37:04 -5771.386437] FAST spr round 6 (radius: 25) [25:38:43 -5763.613642] FAST spr round 7 (radius: 25) [25:40:22 -5763.612581] Model parameter optimization (eps = 1.000000) [25:40:32 -5761.364424] SLOW spr round 1 (radius: 5) [25:41:54 -5760.737188] SLOW spr round 2 (radius: 5) [25:43:15 -5760.505887] SLOW spr round 3 (radius: 5) [25:44:36 -5760.505635] SLOW spr round 4 (radius: 10) [25:46:07 -5725.521328] SLOW spr round 5 (radius: 5) [25:47:28 -5724.126076] SLOW spr round 6 (radius: 5) [25:48:47 -5724.125218] SLOW spr round 7 (radius: 10) [25:50:15 -5723.958004] SLOW spr round 8 (radius: 5) [25:51:35 -5723.957165] SLOW spr round 9 (radius: 10) [25:53:02 -5723.956332] SLOW spr round 10 (radius: 15) [25:54:38 -5717.418499] SLOW spr round 11 (radius: 5) [25:56:01 -5713.019478] SLOW spr round 12 (radius: 5) [25:57:24 -5711.981430] SLOW spr round 13 (radius: 5) [25:58:43 -5711.971233] SLOW spr round 14 (radius: 10) [26:00:11 -5711.971226] SLOW spr round 15 (radius: 15) [26:01:45 -5711.971173] SLOW spr round 16 (radius: 20) [26:03:26 -5708.107513] SLOW spr round 17 (radius: 5) [26:04:53 -5707.838417] SLOW spr round 18 (radius: 5) [26:06:15 -5707.836994] SLOW spr round 19 (radius: 10) [26:07:44 -5707.836946] SLOW spr round 20 (radius: 15) [26:09:21 -5706.971794] SLOW spr round 21 (radius: 5) [26:10:44 -5706.971786] SLOW spr round 22 (radius: 10) [26:12:14 -5706.971783] SLOW spr round 23 (radius: 15) [26:13:51 -5706.971781] SLOW spr round 24 (radius: 20) [26:15:33 -5705.861933] SLOW spr round 25 (radius: 5) [26:16:59 -5705.861592] SLOW spr round 26 (radius: 10) [26:18:29 -5705.261032] SLOW spr round 27 (radius: 5) [26:19:51 -5705.261001] SLOW spr round 28 (radius: 10) [26:21:21 -5705.260999] SLOW spr round 29 (radius: 15) [26:22:58 -5705.260998] SLOW spr round 30 (radius: 20) [26:24:39 -5705.260997] SLOW spr round 31 (radius: 25) [26:26:40 -5619.521983] SLOW spr round 32 (radius: 5) [26:28:09 -5619.035225] SLOW spr round 33 (radius: 5) [26:29:30 -5619.034234] SLOW spr round 34 (radius: 10) [26:31:00 -5619.034201] SLOW spr round 35 (radius: 15) [26:32:36 -5619.034199] SLOW spr round 36 (radius: 20) [26:34:14 -5619.034199] SLOW spr round 37 (radius: 25) [26:36:07 -5619.034199] Model parameter optimization (eps = 0.100000) [26:36:21] ML tree search #20, logLikelihood: -5616.340699 Optimized model parameters: Partition 0: noname Rate heterogeneity: FREE (4 cats, mean), weights&rates: (0.367911,0.448788) (0.241316,0.801586) (0.390405,1.622390) (0.000368,21.909341) Base frequencies (model): M0: 0.147383 0.017579 0.058208 0.017707 0.026331 0.041582 0.017494 0.027859 0.011849 0.076971 0.147823 0.019535 0.037132 0.029940 0.008059 0.088179 0.089653 0.006477 0.032308 0.097931 M1: 0.063139 0.066357 0.011586 0.066571 0.010800 0.009276 0.053984 0.146986 0.034214 0.088822 0.098196 0.032390 0.021263 0.072697 0.016761 0.020711 0.020797 0.025463 0.045615 0.094372 M2: 0.062457 0.066826 0.049332 0.065270 0.006513 0.041231 0.058965 0.080852 0.028024 0.037024 0.075925 0.064131 0.019620 0.028710 0.104579 0.056388 0.062027 0.008241 0.033124 0.050760 M3: 0.106471 0.074171 0.044513 0.096390 0.002148 0.066733 0.158908 0.037625 0.020691 0.014608 0.028797 0.105352 0.007864 0.007477 0.083595 0.055726 0.047711 0.003975 0.010088 0.027159 Substitution rates (model): M 0: 0.295719 0.067388 0.253712 1.029289 0.107964 0.514644 10.868848 0.380498 0.084223 0.086976 0.188789 0.286389 0.155567 1.671061 2.132922 0.529591 0.115551 0.102453 0.916683 0.448317 0.457483 0.576016 1.741924 0.736017 0.704334 5.658311 0.123387 0.221777 93.433377 0.382175 0.235965 6.535048 0.525521 0.303537 0.641259 0.289466 0.102065 2.358429 0.251987 0.216561 0.503084 0.435271 4.873453 0.090748 0.033310 0.746537 0.128905 0.127321 0.904011 0.939733 0.435450 0.046646 0.262076 0.043986 0.189008 0.599450 109.901504 1.070052 5.229858 0.052764 0.021407 0.621146 0.081091 0.205164 5.164456 0.747330 0.308078 0.260889 0.185083 0.080708 0.029955 0.084794 1.862626 0.553477 0.151733 0.230320 0.096955 0.352526 0.590018 0.386853 1.559564 0.606648 0.587531 0.592318 0.885230 4.117654 0.246260 6.508329 0.054187 0.195703 1.669092 0.810168 0.066081 2.437439 0.165666 0.106333 0.093417 0.035149 0.072549 1.202023 1.634845 0.060194 0.069359 2.448827 0.232297 0.064822 3.537387 0.435384 0.290413 0.280695 0.105999 0.206603 0.404968 0.048984 0.069963 0.256662 0.228519 0.241077 4.320442 3.656545 0.290216 0.307466 0.096556 0.306067 0.204296 0.504221 1.991533 0.655465 6.799829 11.291065 0.961142 0.448965 6.227274 20.304886 0.205944 1.495537 0.091940 1.994320 0.754940 0.170343 0.050315 0.372166 0.206332 0.097050 5.381403 0.122332 3.256485 2.261319 0.848067 0.064441 0.102493 0.459041 0.133091 0.561215 0.457430 0.163849 5.260446 0.360946 0.389413 0.033291 0.115301 0.112593 1.559944 0.426508 0.132547 0.498634 0.559069 0.264728 0.693307 0.438856 0.306683 0.109129 18.392863 66.647302 0.400021 4.586081 2.099355 0.411347 0.476350 0.584622 3.634276 0.101797 0.148995 0.089177 0.034710 0.063603 0.755865 20.561407 0.133790 0.154902 M 1: 0.066142 0.590377 0.069930 9.850951 1.101363 0.150375 0.568586 0.051668 0.127170 0.292429 0.071458 1.218562 0.075144 7.169085 30.139501 13.461692 0.021372 0.045779 4.270235 0.468325 0.013688 0.302287 1.353957 0.028386 0.037750 0.262130 0.016923 0.064289 0.855973 0.079621 0.011169 0.161937 0.276530 0.161053 0.081472 0.036742 0.030342 2.851667 3.932151 8.159169 0.219934 0.421974 2.468752 0.344765 0.210724 1.172204 0.763553 0.082464 0.726566 11.149790 4.782635 0.058046 0.498072 0.258487 0.146882 0.249672 0.560142 0.046719 0.106259 0.003656 0.004200 0.014189 0.009876 0.002656 0.040244 0.267322 0.053740 0.006597 0.027639 0.012745 0.582670 0.005035 0.275844 0.098208 0.445038 1.217010 0.033969 1.988516 0.681161 0.825960 18.762977 11.949233 0.286794 0.534219 4.336817 3.054085 0.129551 4.210126 0.165753 1.088704 1.889645 3.344809 0.111063 2.067758 3.547017 2.466507 0.188236 0.203493 0.281953 0.037250 0.029788 0.008541 0.014768 0.125869 0.056702 0.004186 0.110993 0.201148 0.139705 0.009201 0.012095 0.043812 0.013513 0.002533 0.005848 0.031390 0.021612 0.004854 0.129497 0.976631 0.053397 0.019475 0.004964 0.015539 0.031779 0.064558 0.065585 0.079927 0.095591 0.196886 0.408834 0.126088 0.037226 0.452302 0.016212 7.278994 0.029917 7.918203 0.450964 0.169797 0.104288 1.578530 0.015909 0.094365 16.179952 0.042762 14.799537 1.506485 0.637893 0.123793 0.641351 0.154810 0.140750 3.416059 0.259400 0.009457 0.090576 0.292108 0.297913 0.017172 0.021976 0.032578 1.375871 0.457399 0.598048 4.418398 0.239749 0.168432 2.950318 0.143327 0.328689 0.125011 0.562720 1.414883 0.227807 3.478333 2.984862 0.061299 0.077470 1.050562 13.974326 0.154326 0.224675 0.112000 0.060703 0.123480 5.294490 0.447011 0.033381 0.045528 M 2: 0.733336 0.558955 0.503360 4.149599 1.415369 1.367574 1.263002 0.994098 0.517204 0.775054 0.763094 1.890137 0.540460 0.200122 4.972745 1.825593 0.450842 0.526135 3.839269 0.597671 0.058964 2.863355 2.872594 0.258365 0.366868 2.578946 0.358350 0.672023 5.349861 0.691594 0.063347 0.032875 0.821562 0.580847 0.661866 0.265730 0.395134 5.581680 1.279881 1.335650 0.397108 1.840061 5.739035 0.284730 0.109781 1.612642 0.466979 0.141582 0.019509 4.670980 1.967383 0.088064 0.581928 0.145401 0.225860 0.434096 2.292917 1.024707 0.821921 0.027824 0.021443 0.088850 0.060820 0.018288 0.042687 1.199607 0.420710 0.037642 0.141233 0.090101 1.043232 0.209978 0.823594 3.039380 1.463390 1.983693 0.397640 2.831098 4.102068 0.059723 5.901348 2.034980 2.600668 5.413080 4.193725 4.534772 0.377181 4.877840 0.370939 1.298542 3.509873 2.646440 0.087872 0.072299 1.139018 0.864479 0.390688 0.322761 0.625409 0.496780 0.532488 0.232460 0.169219 0.755219 0.379926 0.020447 0.023282 0.503875 0.577513 0.109318 0.153776 0.696533 0.398817 0.008940 0.043707 0.436013 0.087640 0.064863 0.036426 1.673207 0.124068 0.218118 0.039217 0.104335 0.349195 0.838324 0.888693 0.488389 1.385133 0.050226 0.962470 0.502294 1.065585 8.351808 0.377304 5.102837 0.561690 7.010411 3.054968 0.039318 0.204155 2.653232 0.564368 0.854294 15.559906 0.401070 8.929538 5.525874 0.067505 0.273372 0.437116 1.927515 0.940458 2.508169 1.357738 0.043394 0.023126 0.567639 1.048288 0.120994 0.180650 0.449074 3.135353 0.012695 0.570771 2.319555 1.856122 0.975427 3.404087 0.015631 0.458799 0.151684 4.154750 11.429924 1.457957 0.233109 0.077004 0.011074 0.026268 0.052132 8.113282 0.377578 0.429221 0.260296 0.222293 0.273138 2.903836 4.731579 0.564762 0.681215 M 3: 0.658412 0.566269 0.854111 0.884454 1.309554 1.272639 1.874713 0.552007 0.227683 0.581512 0.695190 0.967985 0.344015 0.978992 3.427163 2.333253 0.154701 0.221089 2.088785 0.540749 0.058015 5.851132 2.294145 0.182966 0.684164 3.192521 0.528161 1.128882 3.010922 1.012866 0.227296 0.156635 0.878405 0.802754 0.830884 0.431617 0.456530 3.060574 1.279257 1.438430 0.431464 2.075952 4.840271 0.644656 0.266076 2.084975 0.720060 0.291854 0.028961 4.071574 2.258357 0.073037 1.238426 0.199728 0.160296 0.482619 2.992763 1.296206 0.841829 0.031467 0.048542 0.132774 0.133055 0.056045 0.209188 0.925172 0.360522 0.094591 0.313945 0.118104 0.992259 0.086318 2.149634 5.103188 3.775817 3.954021 0.190734 1.776095 4.495841 0.264277 7.063879 2.221150 3.017954 8.558815 4.310199 2.130054 0.571406 4.137385 0.437589 2.071689 2.498630 1.763546 0.116381 0.296578 1.033710 1.283423 0.312579 0.305772 0.681277 0.507160 0.351381 0.189152 0.217780 0.767361 0.278392 0.092075 0.177263 0.451893 0.653836 0.074620 0.181992 0.752277 0.679853 0.025780 0.082005 0.326441 0.343977 0.195877 0.217424 3.057583 0.377558 0.401252 0.072258 0.241015 0.665865 1.266791 0.680174 0.717301 4.001286 0.362942 1.189259 0.964545 1.350568 12.869737 0.531100 8.904999 0.652629 10.091413 2.671718 0.086367 0.359932 4.797423 0.336801 1.021885 23.029406 0.440178 14.013035 5.069337 0.539010 0.742569 0.780580 1.331875 1.531589 4.414850 1.082703 0.091278 0.172734 0.693405 1.422571 0.068958 0.163829 0.481711 4.643214 0.121821 0.584083 4.216178 1.677263 1.575754 5.046403 0.161015 1.531223 0.599244 5.832025 33.873091 1.914768 1.287474 0.444362 0.076328 0.079916 0.466823 5.231362 0.548763 0.831890 0.382271 0.208791 0.307846 3.717971 5.910440 0.282540 0.964421 Final LogLikelihood: -5252.928338 AIC score: 14507.856676 / AICc score: 8026511.856676 / BIC score: 18665.009102 Free parameters (model + branch lengths): 2001 WARNING: Number of free parameters (K=2001) is larger than alignment size (n=59). This might lead to overfitting and compromise tree inference results! WARNING: Best ML tree contains 3 near-zero branches! Best ML tree with collapsed near-zero branches saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P78411/3_mltree/P78411.raxml.bestTreeCollapsed Best ML tree saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P78411/3_mltree/P78411.raxml.bestTree All ML trees saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P78411/3_mltree/P78411.raxml.mlTrees Optimized model saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P78411/3_mltree/P78411.raxml.bestModel Execution log saved to: /cta/users/eakkoyun/WORKFOLDER/PROD/run_300621/phylogeny-snakemake/results/P78411/3_mltree/P78411.raxml.log Analysis started: 19-Jul-2021 17:46:50 / finished: 20-Jul-2021 20:23:11 Elapsed time: 95781.704 seconds